Query psy15918
Match_columns 376
No_of_seqs 224 out of 838
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 16:29:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hdc_A Protein (transcription 100.0 3.4E-43 1.2E-47 291.4 4.6 95 116-210 1-95 (97)
2 1vtn_C HNF-3/FORK head DNA-rec 100.0 1.9E-42 6.5E-47 289.2 6.9 96 115-210 1-96 (102)
3 2c6y_A Forkhead box protein K2 100.0 1.4E-42 4.7E-47 294.0 4.7 100 113-212 12-111 (111)
4 1kq8_A HFH-1, hepatocyte nucle 100.0 1.9E-42 6.6E-47 288.3 5.1 95 116-210 1-96 (100)
5 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 2.9E-42 9.8E-47 291.3 4.6 91 116-206 2-92 (109)
6 3coa_C Forkhead box protein O1 100.0 3.2E-38 1.1E-42 269.5 5.8 95 112-214 6-105 (117)
7 3l2c_A Forkhead box protein O4 100.0 9.5E-38 3.3E-42 263.9 6.0 89 109-199 16-109 (110)
8 3bpy_A FORK head domain, forkh 100.0 2E-37 6.8E-42 251.3 6.0 79 114-194 2-85 (85)
9 1e17_A AFX; DNA binding domain 100.0 2.1E-37 7E-42 274.2 4.3 97 110-214 33-134 (150)
10 2a07_F Forkhead box protein P2 100.0 5.1E-37 1.7E-41 252.9 0.3 77 116-197 2-78 (93)
11 3g73_A Forkhead box protein M1 100.0 7.3E-36 2.5E-40 262.3 5.4 97 111-210 12-110 (142)
12 1uss_A Histone H1; DNA binding 83.5 1.3 4.3E-05 35.5 4.5 32 121-152 9-41 (88)
13 1uhm_A Histone H1, histone HHO 83.4 1 3.5E-05 35.1 3.8 33 121-153 6-39 (78)
14 1hst_A Histone H5; chromosomal 80.7 1.6 5.5E-05 35.1 4.1 68 121-196 9-80 (90)
15 2rqp_A Heterochromatin protein 78.1 1.1 3.7E-05 35.7 2.3 34 120-153 10-44 (88)
16 1ust_A Histone H1; DNA binding 77.9 2 6.9E-05 34.8 3.9 32 121-152 9-41 (93)
17 2lso_A Histone H1X; structural 61.0 2.4 8.1E-05 33.6 0.0 34 119-152 5-39 (83)
18 1ghc_A GH1; chromosomal protei 31.9 5.8 0.0002 30.2 -1.3 30 121-150 5-35 (75)
19 3rsn_A SET1/ASH2 histone methy 31.3 46 0.0016 30.0 4.3 63 116-178 65-143 (177)
20 4aw0_A HPDK1, 3-phosphoinositi 28.2 14 0.00049 35.0 0.4 39 122-163 261-301 (311)
No 1
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3.4e-43 Score=291.42 Aligned_cols=95 Identities=63% Similarity=1.090 Sum_probs=90.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEecC
Q psy15918 116 EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDA 195 (376)
Q Consensus 116 ~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ldP 195 (376)
.||||||++||+|||+++++++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhcCCccCccC
Q psy15918 196 SSEDVFIGGTTGKLR 210 (376)
Q Consensus 196 ~~e~~f~~G~~~K~R 210 (376)
+++++|++|.+.|+|
T Consensus 81 ~~~~~f~~g~~~rrr 95 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRR 95 (97)
T ss_dssp THHHHHHHSCCCSSS
T ss_pred CHHHHHhCCCccCCC
Confidence 999999999874433
No 2
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=1.9e-42 Score=289.21 Aligned_cols=96 Identities=57% Similarity=1.010 Sum_probs=91.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEec
Q psy15918 115 DEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLD 194 (376)
Q Consensus 115 ~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ld 194 (376)
..||||||++||+|||+++++++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+||
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhcCCccCccC
Q psy15918 195 ASSEDVFIGGTTGKLR 210 (376)
Q Consensus 195 P~~e~~f~~G~~~K~R 210 (376)
|+++++|++|...++|
T Consensus 81 p~~~~~f~~g~~~rr~ 96 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQ 96 (102)
T ss_dssp GGGCSTTCSSCSSSCS
T ss_pred cCHHHHhhcCCeeccc
Confidence 9999999998754433
No 3
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=1.4e-42 Score=294.03 Aligned_cols=100 Identities=56% Similarity=1.020 Sum_probs=93.5
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeE
Q psy15918 113 KKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWM 192 (376)
Q Consensus 113 k~~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ 192 (376)
..+.||||||++||++||+++++++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+
T Consensus 12 ~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~ 91 (111)
T 2c6y_A 12 GSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWR 91 (111)
T ss_dssp --CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEE
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhhhcCCccCccCCC
Q psy15918 193 LDASSEDVFIGGTTGKLRRR 212 (376)
Q Consensus 193 ldP~~e~~f~~G~~~K~RRR 212 (376)
|||+++++|++|.++|+|+|
T Consensus 92 l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 92 IDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp ECHHHHHHHHHHHTCCCCCC
T ss_pred eChhHHHhhhcccccccCCC
Confidence 99999999999987665543
No 4
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.9e-42 Score=288.28 Aligned_cols=95 Identities=57% Similarity=0.987 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCC-CCceeeEec
Q psy15918 116 EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDP-GKGNYWMLD 194 (376)
Q Consensus 116 ~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~ep-GKG~~W~ld 194 (376)
+||||||++||+|||+++++++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++ |||+||+||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 4899999999999999999999999999999999999999999999999999999999999999998887 999999999
Q ss_pred CCchhhhcCCccCccC
Q psy15918 195 ASSEDVFIGGTTGKLR 210 (376)
Q Consensus 195 P~~e~~f~~G~~~K~R 210 (376)
|+++++|++|...++|
T Consensus 81 p~~~~~f~~g~~~rrr 96 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRR 96 (100)
T ss_dssp C---------------
T ss_pred cCHHHHHhCCCcccCC
Confidence 9999999998764433
No 5
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=2.9e-42 Score=291.32 Aligned_cols=91 Identities=65% Similarity=1.135 Sum_probs=88.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEecC
Q psy15918 116 EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDA 195 (376)
Q Consensus 116 ~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ldP 195 (376)
.||||||++||+|||+++++++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|||
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhcCCcc
Q psy15918 196 SSEDVFIGGTT 206 (376)
Q Consensus 196 ~~e~~f~~G~~ 206 (376)
+++++|++|.+
T Consensus 82 ~~~~~f~~g~~ 92 (109)
T 2hfh_A 82 QSEDMFDNGSF 92 (109)
T ss_dssp TCCHHHHSSSC
T ss_pred cHHHHHhCCCc
Confidence 99999999865
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=3.2e-38 Score=269.54 Aligned_cols=95 Identities=43% Similarity=0.806 Sum_probs=77.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCC-----CCcccccccccccCcceeeecCCCCCCC
Q psy15918 112 CKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNK-----QGWQNSIRHNLSLNKCFVKVPRHYDDPG 186 (376)
Q Consensus 112 ~k~~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~-----~GWqNSIRHNLSLNkcFvKvpR~~~epG 186 (376)
.+.+.||||||++||+|||+++++++|||+|||+||+++||||+++. .|||||||||||||+||+||+| +++|
T Consensus 6 s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~--~~~G 83 (117)
T 3coa_C 6 SRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN--EGTG 83 (117)
T ss_dssp -CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECC--SSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhccccc--CCCC
Confidence 35778999999999999999999999999999999999999999875 7999999999999999999988 4689
Q ss_pred CceeeEecCCchhhhcCCccCccCCCCh
Q psy15918 187 KGNYWMLDASSEDVFIGGTTGKLRRRTT 214 (376)
Q Consensus 187 KG~~W~ldP~~e~~f~~G~~~K~RRR~~ 214 (376)
||+||+|||+++. .++++||+.
T Consensus 84 Kg~~W~l~p~~~~------~~~~~Rrr~ 105 (117)
T 3coa_C 84 KSSWWMLNPEGGK------SGKSPRRRA 105 (117)
T ss_dssp CCCEEEECC-------------------
T ss_pred CcceEEECccccc------cCccccccC
Confidence 9999999998653 345555543
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=9.5e-38 Score=263.89 Aligned_cols=89 Identities=43% Similarity=0.785 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccC-----CCCcccccccccccCcceeeecCCCC
Q psy15918 109 PKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTN-----KQGWQNSIRHNLSLNKCFVKVPRHYD 183 (376)
Q Consensus 109 ~~~~k~~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~-----~~GWqNSIRHNLSLNkcFvKvpR~~~ 183 (376)
.....++.||||||++||+|||+++++++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+|+
T Consensus 16 ~~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~-- 93 (110)
T 3l2c_A 16 KGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE-- 93 (110)
T ss_dssp ----CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--
T ss_pred CCccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCC--
Confidence 4455778999999999999999999999999999999999999999986 479999999999999999999984
Q ss_pred CCCCceeeEecCCchh
Q psy15918 184 DPGKGNYWMLDASSED 199 (376)
Q Consensus 184 epGKG~~W~ldP~~e~ 199 (376)
++|||+||+|||++++
T Consensus 94 ~~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 94 ATGKSSWWMLNPEGGK 109 (110)
T ss_dssp STTCCCEEEEC-----
T ss_pred CCCCCceEEECccccC
Confidence 7899999999998753
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=251.27 Aligned_cols=79 Identities=48% Similarity=0.881 Sum_probs=74.9
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccC-----CCCcccccccccccCcceeeecCCCCCCCCc
Q psy15918 114 KDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTN-----KQGWQNSIRHNLSLNKCFVKVPRHYDDPGKG 188 (376)
Q Consensus 114 ~~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~-----~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG 188 (376)
++.||||||++||+|||+++++++|||+|||+||+++||||+.+ ..|||||||||||||+||+||+|+ ++|||
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~--~~GKg 79 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNE--ATGKS 79 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCC--STTCC
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCC--CCCCC
Confidence 57899999999999999999999999999999999999999986 469999999999999999999984 78999
Q ss_pred eeeEec
Q psy15918 189 NYWMLD 194 (376)
Q Consensus 189 ~~W~ld 194 (376)
+||+||
T Consensus 80 ~~W~ld 85 (85)
T 3bpy_A 80 SWWMLN 85 (85)
T ss_dssp CEEEEC
T ss_pred CceecC
Confidence 999997
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=2.1e-37 Score=274.24 Aligned_cols=97 Identities=43% Similarity=0.796 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccC-----CCCcccccccccccCcceeeecCCCCC
Q psy15918 110 KECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTN-----KQGWQNSIRHNLSLNKCFVKVPRHYDD 184 (376)
Q Consensus 110 ~~~k~~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~-----~~GWqNSIRHNLSLNkcFvKvpR~~~e 184 (376)
.....+.||||||++||+|||+++++++|||+|||+||+++||||+++ ..|||||||||||||+||+||+| ++
T Consensus 33 ~~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r--~~ 110 (150)
T 1e17_A 33 GGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EA 110 (150)
T ss_dssp --CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC--TT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC--CC
Confidence 344677899999999999999999999999999999999999999975 47999999999999999999998 57
Q ss_pred CCCceeeEecCCchhhhcCCccCccCCCCh
Q psy15918 185 PGKGNYWMLDASSEDVFIGGTTGKLRRRTT 214 (376)
Q Consensus 185 pGKG~~W~ldP~~e~~f~~G~~~K~RRR~~ 214 (376)
+|||+||+|||+++. .||++||++
T Consensus 111 ~GKG~~W~ldp~~~~------~gk~~Rrr~ 134 (150)
T 1e17_A 111 TGKSSWWMLNPEGGK------SGKAPRRRA 134 (150)
T ss_dssp TSSSCEEEECTTCC----------------
T ss_pred CCCcceEEECccccc------CCccccccc
Confidence 899999999998753 456666654
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=5.1e-37 Score=252.90 Aligned_cols=77 Identities=44% Similarity=0.917 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEecC
Q psy15918 116 EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDA 195 (376)
Q Consensus 116 ~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ldP 195 (376)
.||||||++||++||+++++++|||+|||+||+++|||||.+..|||||||||||||+||+||++ |||+||+||+
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 69999999999999999999999999999999999999999999999999999999999999975 8999999998
Q ss_pred Cc
Q psy15918 196 SS 197 (376)
Q Consensus 196 ~~ 197 (376)
+.
T Consensus 77 ~~ 78 (93)
T 2a07_F 77 VE 78 (93)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=262.27 Aligned_cols=97 Identities=41% Similarity=0.786 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCccc-CCCCcccccccccccCcceeeecCCCCCCCCce
Q psy15918 111 ECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKT-NKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGN 189 (376)
Q Consensus 111 ~~k~~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~-~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~ 189 (376)
......||||||++||+|||+++++++|||+|||+||+++|||||. +..|||||||||||||+||+|+. +++|||+
T Consensus 12 ~~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg~ 88 (142)
T 3g73_A 12 QNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKVS 88 (142)
T ss_dssp --CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCCE
T ss_pred CccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCCc
Confidence 3457799999999999999999999999999999999999999998 89999999999999999999873 5679999
Q ss_pred eeEecCCchhhh-cCCccCccC
Q psy15918 190 YWMLDASSEDVF-IGGTTGKLR 210 (376)
Q Consensus 190 ~W~ldP~~e~~f-~~G~~~K~R 210 (376)
||+|||+++..+ .++.++++|
T Consensus 89 ~W~i~p~~~~~l~~d~~~k~~~ 110 (142)
T 3g73_A 89 FWTIHPSANRYLTLDQVFKPLD 110 (142)
T ss_dssp EEEECTTTCCCCCCC-------
T ss_pred eEEECccccccchhhhhhcccc
Confidence 999999997654 444443333
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=83.52 E-value=1.3 Score=35.47 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCCC-CCcCHHHHHHHHHhhCC
Q psy15918 121 SYNALIMMAIRQSPE-KRLTLNGIYEYIMTNFP 152 (376)
Q Consensus 121 SYaaLIa~AI~sSp~-krLTL~EIY~wI~~~fP 152 (376)
+|..||..||....+ +..++.-|..||+.+|.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 699999999998654 46999999999999965
No 13
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=83.35 E-value=1 Score=35.06 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhcCC-CCCcCHHHHHHHHHhhCCC
Q psy15918 121 SYNALIMMAIRQSP-EKRLTLNGIYEYIMTNFPY 153 (376)
Q Consensus 121 SYaaLIa~AI~sSp-~krLTL~EIY~wI~~~fPY 153 (376)
+|..||..||.... .+..++.-|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 69999999999854 4569999999999999763
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=80.69 E-value=1.6 Score=35.13 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhcCCCC-CcCHHHHHHHHHhhCCCcccCCCCcccccccc---cccCcceeeecCCCCCCCCceeeEecCC
Q psy15918 121 SYNALIMMAIRQSPEK-RLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHN---LSLNKCFVKVPRHYDDPGKGNYWMLDAS 196 (376)
Q Consensus 121 SYaaLIa~AI~sSp~k-rLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHN---LSLNkcFvKvpR~~~epGKG~~W~ldP~ 196 (376)
+|..||..||....++ ..++.-|-.||+.+|.. . .....-+++. |.-+..|+++.. .|-.+.+.|.+.
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~---~-~~~~~~l~~aLk~~v~~G~l~q~Kg----~GasGsfkl~~~ 80 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKV---G-HNADLQIKLSIRRLLAAGVLKQTKG----VGASGSFRLAKS 80 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCC---C-TTHHHHHHHHHHHHHHTTSEEEECC----SSCCCEEEECC-
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccC---c-hhHHHHHHHHHHHHHHcCCeeeecC----CCccceeecCCC
Confidence 6999999999986554 69999999999999762 1 1122223322 224567777732 133344566654
No 15
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=78.14 E-value=1.1 Score=35.71 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhcCC-CCCcCHHHHHHHHHhhCCC
Q psy15918 120 YSYNALIMMAIRQSP-EKRLTLNGIYEYIMTNFPY 153 (376)
Q Consensus 120 ySYaaLIa~AI~sSp-~krLTL~EIY~wI~~~fPY 153 (376)
-+|..||..||.... .+..++.-|..||+.+|+-
T Consensus 10 p~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~ 44 (88)
T 2rqp_A 10 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPS 44 (88)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCST
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 369999999999744 4568999999999999873
No 16
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=77.92 E-value=2 Score=34.76 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCCC-CCcCHHHHHHHHHhhCC
Q psy15918 121 SYNALIMMAIRQSPE-KRLTLNGIYEYIMTNFP 152 (376)
Q Consensus 121 SYaaLIa~AI~sSp~-krLTL~EIY~wI~~~fP 152 (376)
+|..||..||....+ +..++.-|-.||+.+|.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYP 41 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCC
Confidence 699999999998654 46999999999999965
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=60.96 E-value=2.4 Score=33.61 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhcCCC-CCcCHHHHHHHHHhhCC
Q psy15918 119 PYSYNALIMMAIRQSPE-KRLTLNGIYEYIMTNFP 152 (376)
Q Consensus 119 PySYaaLIa~AI~sSp~-krLTL~EIY~wI~~~fP 152 (376)
|-+|..||..||....+ +.-++.-|..+|..++.
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 44899999999998554 45899999999998874
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=31.86 E-value=5.8 Score=30.24 Aligned_cols=30 Identities=30% Similarity=0.363 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcCCC-CCcCHHHHHHHHHhh
Q psy15918 121 SYNALIMMAIRQSPE-KRLTLNGIYEYIMTN 150 (376)
Q Consensus 121 SYaaLIa~AI~sSp~-krLTL~EIY~wI~~~ 150 (376)
+|..||..||....+ +..++.-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 689999999998654 458899999999998
No 19
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=31.29 E-value=46 Score=30.03 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHhcC----------CCCCcCHH-HHHHHHHhhCCCccc----CCCCccccccccccc-Ccceeee
Q psy15918 116 EKPPYSYNALIMMAIRQS----------PEKRLTLN-GIYEYIMTNFPYYKT----NKQGWQNSIRHNLSL-NKCFVKV 178 (376)
Q Consensus 116 ~KPPySYaaLIa~AI~sS----------p~krLTL~-EIY~wI~~~fPYyr~----~~~GWqNSIRHNLSL-NkcFvKv 178 (376)
.|=..++.+|+..||-+. ..+-..+. ||.-||.+++-..-. .+..|.+.|-..|+- +..|+.-
T Consensus 65 ~R~~~~w~~v~~laLyNL~~~~~~~~~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~~~~F~~~ 143 (177)
T 3rsn_A 65 LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVK 143 (177)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHHHHCSSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTCTTTEEEE
T ss_pred EeccCCHHHHHHHHHHhhhhhhhhcccCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcCCceEEec
Confidence 444677899988887762 33445666 999999999997753 457899999999995 5588764
No 20
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=28.15 E-value=14 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCcCHHHH--HHHHHhhCCCcccCCCCccc
Q psy15918 122 YNALIMMAIRQSPEKRLTLNGI--YEYIMTNFPYYKTNKQGWQN 163 (376)
Q Consensus 122 YaaLIa~AI~sSp~krLTL~EI--Y~wI~~~fPYyr~~~~GWqN 163 (376)
-..||...|.-.|.+|+|..|+ +.||.+| |||+. -.|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~H-p~F~~--idw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKAH-PFFES--VTWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHTS-GGGTT--CCCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHCC-CCcCC--CCHHH
Confidence 4579999999999999999998 6788765 99974 34754
Done!