RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15918
         (376 letters)



>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
           domain, forkhead transcription factors, interleukin
           enhancer binding factor; 2.4A {Homo sapiens} SCOP:
           a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
          Length = 111

 Score =  201 bits (513), Expect = 4e-65
 Identities = 57/110 (51%), Positives = 75/110 (68%)

Query: 103 ANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQ 162
           +   G+      D KPPYSY  LI+ AI  +P+K+LTLNGIY +I  N+PYY+T  +GWQ
Sbjct: 2   SMTGGQQMGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 61

Query: 163 NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           NSIRHNLSLN+ F+KVPR  ++PGKG++W +D +SE   I     K R R
Sbjct: 62  NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111


>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double
           helix, transcription-DNA complex; HET: DNA; 2.50A {Homo
           sapiens} PDB: 1d5v_A
          Length = 102

 Score =  194 bits (496), Expect = 1e-62
 Identities = 56/97 (57%), Positives = 71/97 (73%)

Query: 116 EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCF 175
            KPPYSY +LI MAI+Q+P K LTL+ IY++IM  FPYY+ N+Q WQNSIRH+LS N CF
Sbjct: 2   AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61

Query: 176 VKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           VKV R  D PGKG+YW L  SS ++F  G   + ++R
Sbjct: 62  VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKR 98


>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
           norvegicus} SCOP: a.4.5.14
          Length = 109

 Score =  194 bits (496), Expect = 2e-62
 Identities = 61/103 (59%), Positives = 72/103 (69%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAI QSP+K+LTL+GI E+I   FPYY+     WQNSIRHNLSLN CFV
Sbjct: 3   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRS 219
           K+PR   +PGKGNYW LD  SED+F  G+  + R+R       
Sbjct: 63  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRLQHH 105


>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
           winged helix protein, protein/DNA complex; HET: DNA; NMR
           {Rattus norvegicus} SCOP: a.4.5.14
          Length = 97

 Score =  192 bits (491), Expect = 6e-62
 Identities = 61/96 (63%), Positives = 72/96 (75%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAI QSP+K+LTL+GI E+I   FPYY+     WQNSIRHNLSLN CFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           K+PR   +PGKGNYW LD  SED+F  G+  + R+R
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97


>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
           winged helix protein, structure, transcription; NMR
           {Rattus norvegicus} SCOP: a.4.5.14
          Length = 100

 Score =  186 bits (474), Expect = 3e-59
 Identities = 55/99 (55%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAIR S   RLTL  I EY+M  FP+++ +  GW+NS+RHNLSLN CFV
Sbjct: 2   KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61

Query: 177 KVPRHYDDP-GKGNYWMLDASSEDVFIGGTTGKLRRRTT 214
           KV R    P GK NYWML+ +SE  F  G   + R R +
Sbjct: 62  KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYRLS 100


>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
           factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
          Length = 142

 Score =  169 bits (429), Expect = 4e-52
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 109 PKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-TNKQGWQNSIRH 167
             +    E+PPYSY A+I  AI  +  KR+TL  IY +I  +FPY+K   K GW+NSIRH
Sbjct: 10  SWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRH 69

Query: 168 NLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLAAFKRS 227
           NLSL+  FV+        GK ++W +  S+          K     +      L + ++ 
Sbjct: 70  NLSLHDMFVRET---SANGKVSFWTIHPSANRYLTLDQVFKPLDPGSPQLPEHLESQQKR 126


>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding
           domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
           SCOP: a.4.5.14
          Length = 85

 Score =  166 bits (422), Expect = 8e-52
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 7/87 (8%)

Query: 113 KKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRH 167
           +++     SY  LI  AI  +PEKRLTL  IYE+++   PY+K      +  GW+NSIRH
Sbjct: 1   RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRH 60

Query: 168 NLSLNKCFVKVPRHYDDPGKGNYWMLD 194
           NLSL+  F+KV    +  GK ++WML+
Sbjct: 61  NLSLHSKFIKVHN--EATGKSSWWMLN 85


>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
           1.87A {Homo sapiens} PDB: 3co6_C*
          Length = 110

 Score =  163 bits (414), Expect = 3e-50
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 95  NASSEESKANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYY 154
           +   E+  A    +    +++     SY  LI  AI  +PEKRLTL  IYE+++   PY+
Sbjct: 2   SHMLEDPGAVTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYF 61

Query: 155 K-----TNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSE 198
           K      +  GW+NSIRHNLSL+  F+KV    +  GK ++WML+    
Sbjct: 62  KDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSSWWMLNPEGG 108


>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
           monomer, winged-helix, magnesium, transcription/DNA
           complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F
           2kiu_A 3qrf_F
          Length = 93

 Score =  162 bits (411), Expect = 5e-50
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 15/103 (14%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           +PP++Y  LI  AI +S +++LTLN IY +    F Y++ N   W+N++RHNLSL+KCFV
Sbjct: 3   RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRS 219
           +V        KG  W +D               +RR+   + S
Sbjct: 63  RVEN-----VKGAVWTVDEVEY----------QKRRSQKITGS 90


>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal
           rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB:
           3co7_C* 2k86_A 2uzk_A
          Length = 117

 Score =  162 bits (412), Expect = 7e-50
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 14/125 (11%)

Query: 108 KPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQ 162
           K    +++     SY  LI  AI  S EKRLTL+ IYE+++ + PY+K      +  GW+
Sbjct: 2   KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61

Query: 163 NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLA 222
           NSIRHNLSL+  F++V    +  GK ++WML+           +GK  RR  AAS    +
Sbjct: 62  NSIRHNLSLHSKFIRVQN--EGTGKSSWWMLNPEGGK------SGKSPRR-RAASMDNNS 112

Query: 223 AFKRS 227
            F +S
Sbjct: 113 KFAKS 117


>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
           a.4.5.14
          Length = 150

 Score =  158 bits (400), Expect = 1e-47
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 13/142 (9%)

Query: 90  SSEDNNASSEESKANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMT 149
                +   E+  A    +    +++     SY  LI  AI  +PEKRLTL  IYE+++ 
Sbjct: 13  LVPRGSHMLEDPGAVTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVR 72

Query: 150 NFPYYK-----TNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGG 204
             PY+K      +  GW+NSIRHNLSL+  F+KV    +  GK ++WML+          
Sbjct: 73  TVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSSWWMLNPEGGK----- 125

Query: 205 TTGKLRRRTTAASRSRLAAFKR 226
            +GK  RR  A+  S     + 
Sbjct: 126 -SGKAPRRRAASMDSSSKLLRG 146


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 41/134 (30%)

Query: 215 AASRSRLAAFKRSAVFGAAAAG---IYPP----GFIPTATPGSYPPPSWA-LQQLYCNPL 266
             ++        SA+F A   G   +       G         Y    +  L+ LY    
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG-----NTDDY----FEELRDLYQ--- 178

Query: 267 YRYNPYAYPGLQAAA---------IPKPTPLPAHGGAFSMERLLADPATFRPN--FVQTS 315
             Y+      ++ +A               +   G   ++   L +P+   P+  ++ + 
Sbjct: 179 -TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG--LNILEWLENPSN-TPDKDYLLSI 234

Query: 316 PI------LYQMMN 323
           PI      + Q+ +
Sbjct: 235 PISCPLIGVIQLAH 248



 Score = 35.8 bits (82), Expect = 0.027
 Identities = 33/163 (20%), Positives = 48/163 (29%), Gaps = 74/163 (45%)

Query: 99  EESKANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNK 158
           E+S  N EG P           S     M++I       LT   + +Y+       KTN 
Sbjct: 325 EDSLENNEGVP-----------SP----MLSIS-----NLTQEQVQDYVN------KTNS 358

Query: 159 QGWQNSIRH-NLSL-N--KCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLR---- 210
                  +   +SL N  K  V                         + G    L     
Sbjct: 359 HLPAG--KQVEISLVNGAKNLV-------------------------VSGPPQSLYGLNL 391

Query: 211 --RRTTAAS---RSRLAAFKRSAVFGAAAAGIYPPGFIPTATP 248
             R+  A S   +SR+   +R   F           F+P A+P
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSN--------RFLPVASP 426


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.7 bits (76), Expect = 0.12
 Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 47/175 (26%)

Query: 8   DPASPVQRYNDFRVSQEDFRRSHTP----ELLHQNPRSPHQTMLSLTSCSDNDLSDVD-- 61
           +PA   + ++   V       +H P     L+  +       M+ +       L +    
Sbjct: 367 EPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPK 422

Query: 62  ------HEYMSDVDVTGDVDVTGDASPLDCSNKKSSEDNNASSEESKANEEGKPKECKKD 115
                      ++ V  + +     S +D  N   + D++   +      +         
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQ-------- 471

Query: 116 EKPPYSYNALI--MMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGW-QNSIRH 167
               Y Y+ +   +  I    E+      ++     +F         + +  IRH
Sbjct: 472 ----YFYSHIGHHLKNIEHP-ERMTLFRMVF----LDF--------RFLEQKIRH 509



 Score = 29.8 bits (66), Expect = 1.6
 Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 44/115 (38%)

Query: 128 MAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV---KVPRHYD- 183
           +  +Q  E  +++  I         Y +   +     + +  +L++  V    +P+ +D 
Sbjct: 416 LVEKQPKESTISIPSI---------YLELKVK-----LENEYALHRSIVDHYNIPKTFDS 461

Query: 184 ----DPGKGNYW-------MLDASSEDV------------FIGGTTGKLRRRTTA 215
                P    Y+       + +    +             F+     K+R  +TA
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHDSTA 513



 Score = 28.3 bits (62), Expect = 5.8
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 43/187 (22%)

Query: 18  DFRVSQ-EDFRRS--HTPELLH--QNPRSPHQTMLSLTSCSDNDLSDVDHEYMSDVDVTG 72
           +F     +D  +S     E+ H   +  +   T+    +        V  +++ +V    
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVL--- 87

Query: 73  DVDVTGDASPLDCSNKKSSEDNNASSEESKANEEGKPKECKKDEKPPYS------YNALI 126
            ++     SP+       +E    S       E+             Y+      Y  L 
Sbjct: 88  RINYKFLMSPI------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 127 MMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKC-FVKVPRHYDDP 185
              +   P K + ++G     +         K  W       ++L+ C   KV    D  
Sbjct: 142 QALLELRPAKNVLIDG-----VLGS-----GKT-W-------VALDVCLSYKVQCKMDF- 182

Query: 186 GKGNYWM 192
               +W+
Sbjct: 183 --KIFWL 187


>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
           abnormal nuclear; zinc-finger, beta barrel, VWA domain,
           gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
           a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
          Length = 926

 Score = 33.3 bits (75), Expect = 0.16
 Identities = 20/138 (14%), Positives = 31/138 (22%), Gaps = 3/138 (2%)

Query: 239 PPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSME 298
            P     +      PP  A+  +                   A      +  H       
Sbjct: 34  DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP 93

Query: 299 RLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRMTSPASSCSSSPEP 358
                P          +P+  Q       ++ Q      QN +P     P    +  P P
Sbjct: 94  NAYMQPQ---VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPP 150

Query: 359 IIRQNLYRPEAVLARPPS 376
           I    L  P  V+     
Sbjct: 151 ITDLTLPPPPLVIPPERM 168



 Score = 28.3 bits (62), Expect = 6.1
 Identities = 22/140 (15%), Positives = 30/140 (21%), Gaps = 2/140 (1%)

Query: 227 SAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPT 286
            AV          P              S     L+  PL   N Y  P +         
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 287 PLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRMT 346
                  A +  +  A          Q  PI   ++  L                P    
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPI--DLLTELPPPITDLTLPPPPLVIPPERM 168

Query: 347 SPASSCSSSPEPIIRQNLYR 366
              S  S++    IR  L  
Sbjct: 169 LVPSELSNASPDYIRSTLNA 188


>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A
           {Anabaena SP}
          Length = 388

 Score = 28.6 bits (63), Expect = 4.0
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 134 PEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWML 193
            +K + L     +  +        ++ W    R+          + +H  D     Y+ L
Sbjct: 48  TDKFIWLQNRQVWTFSMLCNQLEKRENWLKIARN------GAKFLAQHGRDDEGNWYFAL 101

Query: 194 DASSEDV 200
               E +
Sbjct: 102 TRGGEPL 108


>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
           inhibition, bromopyruvate, amino-acid biosynthesis; HET:
           FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
           3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
          Length = 644

 Score = 27.8 bits (62), Expect = 7.6
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 10/59 (16%)

Query: 234 AAGIYPPGFIPTATPGSYPP---PSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLP 289
            A     G      P   P    PSW  Q+    P+ RY P+A          +P  L 
Sbjct: 8   DAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNRYRPFAEE-------VEPIRLR 59


>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A
           {Caulobacter crescentus NA1000}
          Length = 110

 Score = 25.9 bits (57), Expect = 9.2
 Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 127 MMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPG 186
           M   R S   +  L+ I+ Y    +         +   ++  + +      + +  ++  
Sbjct: 15  MKPYRLSRRAKADLDDIWTYSEQRW--GVEQAADYARELQATIEMIAEHPGMGQPDENLR 72

Query: 187 KG-------NYWMLDASSEDVFI 202
            G       ++ +       V I
Sbjct: 73  AGYRRCASGSHVVFYRVGVRVEI 95


>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
           chromophore, glycoprotein, lipoprotein, membrane,
           palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
           2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
          Length = 448

 Score = 27.2 bits (60), Expect = 9.4
 Identities = 11/37 (29%), Positives = 12/37 (32%)

Query: 239 PPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYP 275
           P G+ P   P    PP     Q Y  P     P   P
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAP 433


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,808,095
Number of extensions: 334198
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 29
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.3 bits)