RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15918
         (376 letters)



>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 97

 Score =  153 bits (388), Expect = 5e-47
 Identities = 61/96 (63%), Positives = 72/96 (75%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAI QSP+K+LTL+GI E+I   FPYY+     WQNSIRHNLSLN CFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           K+PR   +PGKGNYW LD  SED+F  G+  + R+R
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97


>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score =  151 bits (384), Expect = 2e-46
 Identities = 56/98 (57%), Positives = 72/98 (73%)

Query: 115 DEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKC 174
           D KPPYSY  LI+ AI  +P+K+LTLNGIY +I  N+PYY+T  +GWQNSIRHNLSLN+ 
Sbjct: 1   DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 60

Query: 175 FVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           F+KVPR  ++PGKG++W +D +SE   I     K R R
Sbjct: 61  FIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
           fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score =  146 bits (371), Expect = 2e-44
 Identities = 60/89 (67%), Positives = 73/89 (82%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAI+ +PEK++TLNGIY++IM  FP+Y+ NKQGWQNSIRHNLSLN+CFV
Sbjct: 4   KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGT 205
           KVPR    PGKG+YW LD  S ++F  G+
Sbjct: 64  KVPRDDKKPGKGSYWTLDPDSYNMFENGS 92


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 85

 Score =  128 bits (323), Expect = 1e-37
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 7/87 (8%)

Query: 113 KKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYK-----TNKQGWQNSIRH 167
           +++     SY  LI  AI  +PEKRLTL  IYE+++   PY+K      +  GW+NSIRH
Sbjct: 1   RRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRH 60

Query: 168 NLSLNKCFVKVPRHYDDPGKGNYWMLD 194
           NLSL+  F+KV    +  GK ++WML+
Sbjct: 61  NLSLHSKFIKVHN--EATGKSSWWMLN 85


>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 75

 Score =  125 bits (314), Expect = 2e-36
 Identities = 44/74 (59%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 122 YNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRH 181
           Y ALI MAIR S   RLTL  I EY+M  FP+++ +  GW+NS+RHNLSLN CFVKV R 
Sbjct: 1   YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60

Query: 182 YDDP-GKGNYWMLD 194
              P GK NYWML+
Sbjct: 61  PSRPWGKDNYWMLN 74


>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score =  124 bits (314), Expect = 3e-36
 Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           +PP++Y  LI  AI +S +++LTLN IY +    F Y++ N   W+N++RHNLSL+KCFV
Sbjct: 2   RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61

Query: 177 KVPRHYDDPGKGNYWMLD 194
           +V        KG  W +D
Sbjct: 62  RVEN-----VKGAVWTVD 74


>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
           221, C-terminal domain {Trypanosoma brucei brucei
           [TaxId: 5702]}
          Length = 80

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 6/48 (12%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 77  TGDASPLDCSNKKSSEDNNASSEES-------KANEEGKPKECKKDEK 117
           T    P +   + +  + + + ++        K + + + K+C  D++
Sbjct: 9   TQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKE 56


>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
           {Corynebacterium diphtheriae [TaxId: 1717]}
          Length = 187

 Score = 25.9 bits (56), Expect = 6.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 146 YIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNY 190
           ++M NF  Y   K G+ +SI+  +   K   +   +YDD  KG Y
Sbjct: 12  FVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQ--GNYDDDWKGFY 54


>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type
           {Yeast (Candida albicans) [TaxId: 5476]}
          Length = 192

 Score = 26.0 bits (56), Expect = 6.8
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 56  DLSDVDHEYMSDVDVTGDVDVTGDA-SPLDCSNKKSSEDNNASSEESKANEEGKPKECKK 114
           + S V H  +++++      +  D        +          SE  K   +   ++  K
Sbjct: 123 NNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQP----KSELQKFVGDTVLEDDIK 178

Query: 115 DEKPPYSY 122
           +    Y+Y
Sbjct: 179 EGDFTYNY 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,424,511
Number of extensions: 66199
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 10
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.8 bits)