BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15921
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing protein CG31690
OS=Drosophila melanogaster GN=CG31690 PE=2 SV=3
Length = 859
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 90/133 (67%)
Query: 5 FLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGF 64
F+ RAIL+N D+ + PL L NDFWGTP+ SHGS+RPL VL+FRLNY G
Sbjct: 42 FVYDDRRAILANGDVTGARPLANLLRNDFWGTPLVDSGSHGSWRPLCVLSFRLNYLAGGM 101
Query: 65 RPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124
P YHL N+ LHC+ T LV L+A ++LP+ A ALF VHP HTEAVAGLVGRAD+
Sbjct: 102 TPLGYHLVNVMLHCVATWLVFLVARTLLPSRMGVLAAGALFAVHPAHTEAVAGLVGRADL 161
Query: 125 LSCIFYLVAILMF 137
SC+ YL+A L +
Sbjct: 162 ASCVCYLLAYLSY 174
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 143 bits (360), Expect = 5e-34, Method: Composition-based stats.
Identities = 66/126 (52%), Positives = 90/126 (71%), Gaps = 1/126 (0%)
Query: 12 AILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAYHL 71
AIL N+D+ PSTPL+ LF NDFWGTP+ SH SYRPL+VLTFRLNY S +P +YHL
Sbjct: 35 AILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHL 94
Query: 72 TNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYL 131
N+ H + +++ L + ++++ +AS LF VHP+HTEAV G+VGRA++LS IF+L
Sbjct: 95 LNMIFHAV-VSVIFLKVCKLFLDNKSSVIASLLFAVHPIHTEAVTGVVGRAELLSSIFFL 153
Query: 132 VAILMF 137
A L +
Sbjct: 154 AAFLSY 159
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 142 bits (357), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 1/126 (0%)
Query: 12 AILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAYHL 71
AIL N+D+ PSTPL+ LF NDFWGTP+ SH SYRPL+VLTFRLNY S +P +YHL
Sbjct: 40 AILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYRPLTVLTFRLNYLLSELKPMSYHL 99
Query: 72 TNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYL 131
N H + +++ L + R++ +A+ LF VHP+HTEAV G+VGRA++LS +F+L
Sbjct: 100 LNTVFHAV-VSVIFLKVCRLFLDKRSSMIAALLFAVHPIHTEAVTGVVGRAELLSSVFFL 158
Query: 132 VAILMF 137
A L +
Sbjct: 159 AAFLSY 164
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Query: 5 FLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNY-AWSG 63
F+ RAIL+N D+ TP + F NDFWGTP+ SHGS+RPL VL+FRLNY G
Sbjct: 54 FVYDDRRAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPLCVLSFRLNYLIGGG 113
Query: 64 FRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRAD 123
F P+ +HL N LHC+ TALV +A ++L + A A ALF HP+HTEAVAG+VGRAD
Sbjct: 114 FAPWGFHLVNNLLHCVATALVVRVARTLLASVWAVLAAGALFAAHPIHTEAVAGVVGRAD 173
Query: 124 ILSCIFYLVAILMFVH 139
+ +C+ YL+ L ++
Sbjct: 174 LAACVCYLLTYLSYLR 189
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 123 bits (308), Expect = 5e-28, Method: Composition-based stats.
Identities = 58/115 (50%), Positives = 74/115 (64%)
Query: 10 SRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAY 69
SRAI +NQD+LP TP +F NDFWGT + SH SYRPL L+FRLNY + G P+ Y
Sbjct: 28 SRAIKTNQDLLPETPWNHIFFNDFWGTLLTHSGSHKSYRPLCTLSFRLNYLFGGLDPWNY 87
Query: 70 HLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124
HL N+ LH T L L ++ + +A LF HP+HTEAV+G+VGRAD+
Sbjct: 88 HLVNVLLHSAVTGLFTNLCKALFGSGCWTLIAGLLFASHPIHTEAVSGIVGRADV 142
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
GN=Tmtc2 PE=2 SV=1
Length = 836
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%)
Query: 5 FLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGF 64
F SRAI +NQD+LP TP +F+NDFWGT + SH SYRPL L+FRLN+A G
Sbjct: 23 FCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGL 82
Query: 65 RPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124
P++YHL N+ LH T L + ++L ++A +F HP+HTEAVAG+VGRAD+
Sbjct: 83 NPWSYHLVNVLLHAAVTGLFTRFSKALLGDGYWTFMAGLMFASHPIHTEAVAGIVGRADV 142
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 77/120 (64%)
Query: 5 FLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGF 64
F SRAI +NQD+LP TP +F+NDFWGT + SH SYRPL L+FRLN+A G
Sbjct: 23 FCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLCTLSFRLNHAIGGL 82
Query: 65 RPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124
P++YHL N+ LH T L + +L ++A +F HP+HTEAVAG+VGRAD+
Sbjct: 83 NPWSYHLVNVLLHAAVTGLFTSFSKILLGDGYWTFMAGLMFASHPIHTEAVAGIVGRADV 142
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 16/151 (10%)
Query: 4 TFLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWS- 62
F+ S AI++N+D+ TPL L+H+DFWG+ + S +SH SYRPL+VLTFR+NY S
Sbjct: 40 DFVFDDSEAIVNNKDLQSDTPLGDLWHHDFWGSKLSSNTSHKSYRPLTVLTFRINYYLSG 99
Query: 63 GFRPFAYHLTNIGLHCLCTALVHLLALSVL-----------PTH---RAAWVASALFGVH 108
GF P +H+ NI LH + L+ L SVL H RA+ +A+ LF VH
Sbjct: 100 GFHPVGFHVVNILLHGSISILM-LDVFSVLFGGLQYTGKGQRVHLAPRASLLATLLFAVH 158
Query: 109 PVHTEAVAGLVGRADILSCIFYLVAILMFVH 139
PVHTE VAG+VGRAD+L +F+L++ L +
Sbjct: 159 PVHTECVAGVVGRADLLCALFFLLSFLGYCQ 189
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 12 AILSNQDILPSTPLE-ALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAYH 70
AI++N D+ P TPL A+F NDFWG + +SH SYRPL VL+FRLN +G PF +H
Sbjct: 55 AIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSFRLNIFLTGMNPFYFH 114
Query: 71 LTNIGLHCLCT-ALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124
N+ LHCL T L++ +V A+V + LF VHPVHTEAVAG+VGRAD+
Sbjct: 115 AVNVILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPVHTEAVAGIVGRADV 169
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 84/146 (57%), Gaps = 20/146 (13%)
Query: 12 AILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAYHL 71
AI N+D+ P TPL +F NDFWGTP++ SH SYRPL+VLTFR NY PF YHL
Sbjct: 63 AIRDNKDLRPHTPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTFRFNYLLHALEPFGYHL 122
Query: 72 TNIGL--------HCLCTALVHLLALS------------VLPTHRAAWVASALFGVHPVH 111
N+ L +C L+ A S V + A+VAS LF VHPVH
Sbjct: 123 VNLLLHLSVCLLWRRVCRLLLRQCAASGSNAISAPSSSSVSQLNTCAFVASLLFAVHPVH 182
Query: 112 TEAVAGLVGRADILSCIFYLVAILMF 137
TEAV G+VGRA++LS I +L A L +
Sbjct: 183 TEAVTGVVGRAELLSSICFLAAFLSY 208
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 12 AILSNQDILPSTPLE-ALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAYH 70
AI++N D+ P PL +F NDFWG + +SH SYRPL VLTF+LN +G PF +H
Sbjct: 56 AIVNNPDVRPGAPLRWGIFTNDFWGKGMAENTSHKSYRPLCVLTFKLNIFLTGMNPFYFH 115
Query: 71 LTNIGLHCLCT-ALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124
NI LHCL T L++ +V A+V + LF VHP+HTEAVAG+VGRAD+
Sbjct: 116 AVNIILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPIHTEAVAGIVGRADV 170
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 88/161 (54%), Gaps = 40/161 (24%)
Query: 4 TFLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWS- 62
F+ S AI++N+D+ TPL L+H+DFWG+ + S +SH SYRPL+VLTFR+NY S
Sbjct: 41 DFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRINYYLSG 100
Query: 63 GFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFG---------------- 106
GF P +H+ NI LH +SVL V S LFG
Sbjct: 101 GFHPVGFHVVNILLHS---------GISVLMVD----VFSVLFGGLQYTSKGRRLHLAPR 147
Query: 107 ----------VHPVHTEAVAGLVGRADILSCIFYLVAILMF 137
VHPVHTE VAG+VGRAD+L +F+L++ L +
Sbjct: 148 ASLLAALLFAVHPVHTECVAGVVGRADLLCALFFLLSFLGY 188
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 7/133 (5%)
Query: 12 AILSNQDI--LPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPFAY 69
AI+ N+D+ LP T A+F +DFWG + S SH S+RPL+ L F YA G
Sbjct: 44 AIVKNRDVNSLP-TNWTAIFTHDFWGASLLSSDSHKSFRPLTTLMFHCEYALLGLSAAHM 102
Query: 70 HLTNIGLHCLCTALVHLLALSV----LPTHRAAWVASALFGVHPVHTEAVAGLVGRADIL 125
N+ LHC+ T L+ L S+ + T R A +++ALF HP+HTEAV+G+VGRA+++
Sbjct: 103 KFLNLLLHCVNTLLMWRLIRSLYVPEVSTARWAILSAALFAAHPIHTEAVSGVVGRAELM 162
Query: 126 SCIFYLVAILMFV 138
+ +L+ +L+ V
Sbjct: 163 FGMIHLLCLLLTV 175
>sp|Q20144|TMTC1_CAEEL Transmembrane and TPR repeat-containing protein F38B6.6
OS=Caenorhabditis elegans GN=F38B6.6 PE=3 SV=2
Length = 690
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 79/144 (54%), Gaps = 5/144 (3%)
Query: 5 FLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGF 64
F+ + +I++N + PL +F DFWG I S +SH SYRP++ TF LNY
Sbjct: 51 FVFDDAESIVNNPIVNGKDPLLQIFSRDFWGRSISSSNSHKSYRPVTTFTFWLNYKLHET 110
Query: 65 RPFAYHLTNIGLHCLCTALVHLLALS---VLPTHRAAWVASALFGVHPVHTEAVAGLVGR 121
YH+ NI H + T + + L + A+ AS LF VHPVHTEAVA + GR
Sbjct: 111 STLGYHVVNIICHTVATLVFYKLGKQLEHIFDFFNIAFSASILFAVHPVHTEAVANITGR 170
Query: 122 ADILSCIFYLVAILMFVHLPPRSI 145
A++L IF L A+++ H+ R I
Sbjct: 171 AELLMTIFSLAALIL--HVKNREI 192
>sp|Q21H90|PSD_SACD2 Phosphatidylserine decarboxylase proenzyme OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=psd
PE=3 SV=1
Length = 286
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 84 VHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIF 129
VH+ A +L + ++ LF V+PV TE VAGL R + ++ IF
Sbjct: 146 VHMPAAGLLT--QMNYIPGDLFSVNPVTTENVAGLFARNERIAAIF 189
>sp|Q5RCC2|PRP6_PONAB Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1
Length = 941
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 80 CTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRA 122
C ++ AL V P+ ++ W+ +A FG + E++ L+ RA
Sbjct: 558 CARAIYAYALQVFPSKKSVWLRAAYFGKNHGTRESLEALLQRA 600
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,820,523
Number of Sequences: 539616
Number of extensions: 2208744
Number of successful extensions: 5335
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5303
Number of HSP's gapped (non-prelim): 36
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)