Query psy15921
Match_columns 158
No_of_seqs 103 out of 459
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 16:35:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13231 PMT_2: Dolichyl-phosp 98.9 8.9E-09 1.9E-13 76.6 9.7 103 49-154 4-106 (159)
2 PF02366 PMT: Dolichyl-phospha 98.4 2.2E-06 4.9E-11 69.5 9.0 95 45-141 60-155 (245)
3 TIGR03663 conserved hypothetic 98.2 1.1E-05 2.3E-10 71.9 9.3 103 49-155 53-155 (439)
4 COG1807 ArnT 4-amino-4-deoxy-L 97.8 0.00015 3.3E-09 65.1 10.5 109 45-156 62-171 (535)
5 PRK13279 arnT 4-amino-4-deoxy- 97.8 0.00038 8.3E-09 63.8 12.4 91 48-140 63-153 (552)
6 PF11028 DUF2723: Protein of u 97.0 0.014 3.1E-07 46.3 10.7 114 41-157 13-146 (178)
7 PF10131 PTPS_related: 6-pyruv 96.8 0.0092 2E-07 55.4 9.3 102 45-147 2-103 (616)
8 COG1928 PMT1 Dolichyl-phosphat 96.5 0.015 3.3E-07 54.6 9.2 86 55-142 98-183 (699)
9 TIGR03766 conserved hypothetic 96.4 0.018 3.9E-07 51.8 8.7 82 58-142 129-211 (483)
10 PF04188 Mannosyl_trans2: Mann 96.2 0.032 6.9E-07 49.8 9.1 70 70-142 116-185 (443)
11 COG5617 Predicted integral mem 96.0 0.022 4.7E-07 54.1 7.1 101 44-145 67-167 (801)
12 KOG2647|consensus 95.7 0.04 8.7E-07 49.2 7.3 70 70-142 129-198 (444)
13 COG5305 Predicted membrane pro 94.8 0.12 2.6E-06 47.7 7.6 93 47-142 97-189 (552)
14 PF09852 DUF2079: Predicted me 94.1 0.39 8.5E-06 42.6 9.2 109 45-157 40-148 (449)
15 COG4745 Predicted membrane-bou 93.2 0.47 1E-05 43.2 7.9 107 44-154 57-168 (556)
16 COG4346 Predicted membrane-bou 90.8 1 2.3E-05 39.8 7.1 90 49-141 138-227 (438)
17 PF02516 STT3: Oligosaccharyl 89.8 0.18 3.9E-06 44.4 1.7 81 73-154 101-183 (483)
18 KOG3359|consensus 88.6 4.3 9.4E-05 38.7 9.9 93 47-141 83-192 (723)
19 PF09594 DUF2029: Protein of u 85.5 12 0.00026 29.2 9.7 42 98-142 55-96 (241)
20 COG1287 Uncharacterized membra 83.5 2.2 4.8E-05 40.8 5.3 109 47-156 87-205 (773)
21 PF14264 Glucos_trans_II: Gluc 80.2 26 0.00056 29.2 10.2 87 45-137 27-119 (319)
22 COG5542 Predicted integral mem 77.3 5.8 0.00013 35.6 5.5 111 45-158 93-206 (420)
23 PF09913 DUF2142: Predicted me 76.8 28 0.00062 29.8 9.6 85 47-138 95-186 (389)
24 TIGR03459 crt_membr carotene b 74.4 44 0.00096 30.6 10.4 93 44-141 140-237 (470)
25 PF06728 PIG-U: GPI transamida 71.0 46 0.001 29.1 9.6 93 47-141 58-164 (382)
26 PLN02841 GPI mannosyltransfera 67.3 33 0.0007 31.1 7.9 67 73-141 89-155 (440)
27 COG3463 Predicted membrane pro 56.6 1.2E+02 0.0025 27.8 9.4 95 44-141 67-161 (458)
28 cd03500 SQR_TypeA_SdhD_like Su 38.8 58 0.0013 22.8 4.0 20 113-132 1-20 (106)
29 PF11847 DUF3367: Domain of un 36.1 4.1E+02 0.0088 25.6 10.4 89 52-142 58-148 (680)
30 KOG2292|consensus 30.9 1.4E+02 0.003 28.4 5.9 69 79-149 129-198 (751)
31 PF10066 DUF2304: Uncharacteri 29.6 2.2E+02 0.0047 20.5 7.3 58 78-135 10-76 (115)
32 PF09586 YfhO: Bacterial membr 28.0 2.7E+02 0.0059 26.4 7.6 59 48-109 74-134 (843)
33 PF11282 DUF3082: Protein of u 24.0 2.6E+02 0.0056 19.5 6.9 35 102-136 29-66 (82)
34 KOG3356|consensus 21.7 44 0.00096 25.2 0.9 37 3-60 45-81 (147)
35 PF10476 DUF2448: Protein of u 20.6 3.3E+02 0.0071 22.2 5.6 69 74-142 113-188 (204)
No 1
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=98.94 E-value=8.9e-09 Score=76.60 Aligned_cols=103 Identities=28% Similarity=0.365 Sum_probs=90.7
Q ss_pred hhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHH
Q psy15921 49 PLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCI 128 (158)
Q Consensus 49 PL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~l 128 (158)
|+.......-..++|.++++.|+.|++.+.+....+|.+.|+..+ +..|.++++++++-|....... ..++|.+..+
T Consensus 4 Pl~~~~~~~~~~l~G~~~~~~~~~~~l~~~~~~~~~y~i~r~~~~-~~~a~~~~l~~~~~p~~~~~~~--~~~~~~~~~~ 80 (159)
T PF13231_consen 4 PLYFLLLALFFKLFGDSVWALRLFNILFSLLTLLLIYLIARRLFG-RRAALIAALLLALSPMFIFYSA--SARPDMLLLF 80 (159)
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-chHHHHHHHHHHHhHHHHHHHH--HHhHHHHHHH
Confidence 777777888899999999999999999999999999999999988 6899999999999997666544 6788999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHhh
Q psy15921 129 FYLVAILMFVHLPPRSILRLKEIYGV 154 (158)
Q Consensus 129 F~L~al~~ylr~~~~~~~r~~~~~~~ 154 (158)
|.+++++++.|+.++++.|...+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (159)
T PF13231_consen 81 FFLLALYAFYRYIKSKKWRWWILAGL 106 (159)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999887776655554
No 2
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.38 E-value=2.2e-06 Score=69.47 Aligned_cols=95 Identities=22% Similarity=0.276 Sum_probs=82.6
Q ss_pred CCcchhHhhhhhhhhhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhh
Q psy15921 45 GSYRPLSVLTFRLNYAWSG-FRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRAD 123 (158)
Q Consensus 45 ~~yRPL~~ls~~l~~~l~G-~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~ 123 (158)
..|.|.....-...+..+| .+.++.|+.|.+.-.+.+.++|.+.|++.+++..|++++++++..|....- --....|
T Consensus 60 ~~~p~~~~~~~~~~~~~~~~~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~--sr~~~~D 137 (245)
T PF02366_consen 60 FGYPPLYYWISAIGFYYFGSVNYWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQ--SRYALLD 137 (245)
T ss_pred hcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHH--HHHHhhH
Confidence 3466777766666677788 799999999999999999999999999999999999999999999977654 4457789
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy15921 124 ILSCIFYLVAILMFVHLP 141 (158)
Q Consensus 124 lLa~lF~L~al~~ylr~~ 141 (158)
....+|.+++++|+.++.
T Consensus 138 ~~l~~f~~la~~~~~~~~ 155 (245)
T PF02366_consen 138 SILLFFILLAIYCLLRWY 155 (245)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999993
No 3
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=98.17 E-value=1.1e-05 Score=71.89 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=87.0
Q ss_pred hhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHH
Q psy15921 49 PLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCI 128 (158)
Q Consensus 49 PL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~l 128 (158)
|+....-++-+.+||.+.+..|+.+.++..+ ..+++.+.++..++ ..++++|++.++.|..+.. ....+.|.+..+
T Consensus 53 Pll~wl~A~~~~lFG~se~a~RL~~aL~g~~-v~l~~~~~r~~~~~-~~al~AAllla~sp~~~~~--sr~~~~D~~l~~ 128 (439)
T TIGR03663 53 PFLYHITAAVFHLFGISDATARLLPAVFGVL-LPLTAWLYRKRLGD-NEVLWAAVLLAFSPVMVYY--SRFMRNDIFVAF 128 (439)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHcCc-HHHHHHHHHHHHhHHHHHH--HHHHhHHHHHHH
Confidence 7766666777899999999999999999944 77888888888865 5889999999999998543 567899999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHhhc
Q psy15921 129 FYLVAILMFVHLPPRSILRLKEIYGVT 155 (158)
Q Consensus 129 F~L~al~~ylr~~~~~~~r~~~~~~~~ 155 (158)
|.++++++++|+.++++.|+..++|+.
T Consensus 129 f~~lal~~l~r~~~~~~~~~~~lag~~ 155 (439)
T TIGR03663 129 FTLLAVGAAFRYLDTGKRRYLFLAASA 155 (439)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999999888877877776654
No 4
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.00015 Score=65.07 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=89.4
Q ss_pred CCcchhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhH
Q psy15921 45 GSYRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124 (158)
Q Consensus 45 ~~yRPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~l 124 (158)
...=|+.+-.-++-+.+||.+.++.++.+.+.+.+.++++|.+.+++.++ ..|.+|+++.+.-|.-+-. -...-.|.
T Consensus 62 ~~kPPl~~Wl~a~~~~lfG~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~-~~a~~aali~~~~p~~~~~--~~~~~~D~ 138 (535)
T COG1807 62 FEKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGR-LAALLAALILLLTPLFFLI--GRLALLDA 138 (535)
T ss_pred cCCCcHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH--hHHHhhhH
Confidence 33467888878888999999999999999999999999999999999998 8999999999888864322 23445688
Q ss_pred HHHHHHHHHHHHHHhcCchh-hHHHHHHHhhcc
Q psy15921 125 LSCIFYLVAILMFVHLPPRS-ILRLKEIYGVTL 156 (158)
Q Consensus 125 La~lF~L~al~~ylr~~~~~-~~r~~~~~~~~~ 156 (158)
..++|..++++++.++++++ ..++....|+.+
T Consensus 139 ~l~~f~~la~~~~~~~~~~~~~~~~~l~~gl~l 171 (535)
T COG1807 139 ALAFFLTLALALLYLALRARGKLKWLLLLGLAL 171 (535)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 89999999999999999874 666666555543
No 5
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=97.79 E-value=0.00038 Score=63.81 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=73.1
Q ss_pred chhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHH
Q psy15921 48 RPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSC 127 (158)
Q Consensus 48 RPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~ 127 (158)
=|+.+-.-++-+.+||.+.++.++.|.+..++.++++|.+.+++.+++..|++|+++++.-|.-... . .....|.+.+
T Consensus 63 PPL~yWl~Als~~LFG~~~~a~RLpsaL~~~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~-g-~~a~~D~~l~ 140 (552)
T PRK13279 63 PIAGYWINSIGQWLFGDNNFGVRFGSVFSTLLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGI-G-TYAVLDPMIT 140 (552)
T ss_pred CcHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-H-HHHhhhHHHH
Confidence 5777766777888999999999999999999999999999999998888999999998876643221 1 1246788888
Q ss_pred HHHHHHHHHHHhc
Q psy15921 128 IFYLVAILMFVHL 140 (158)
Q Consensus 128 lF~L~al~~ylr~ 140 (158)
+|..++++++.+.
T Consensus 141 ~fi~lal~~f~~~ 153 (552)
T PRK13279 141 LWLTAAMCSFWLA 153 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 8988887665433
No 6
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=96.96 E-value=0.014 Score=46.31 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred CCCCCCcchhHhhhhhhhhhhcC-CCchhHH--HHHHHHHHHHHHHHHHHHHHHcch-------------hhHHHHHHHH
Q psy15921 41 PSSHGSYRPLSVLTFRLNYAWSG-FRPFAYH--LTNIGLHCLCTALVHLLALSVLPT-------------HRAAWVASAL 104 (158)
Q Consensus 41 ~~~~~~yRPL~~ls~~l~~~l~G-~~p~~~h--l~nlllH~~~~~Lv~~l~~~l~~~-------------~~~A~laall 104 (158)
+..|++.-|+-.+.=.+ ..++. ....+++ +.|.+.-++++.++|+...++.++ ...++++|+.
T Consensus 13 gV~HPPGyPlf~llg~l-f~~lp~~~~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~ 91 (178)
T PF11028_consen 13 GVPHPPGYPLFTLLGRL-FSLLPDFGNIAWRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALA 91 (178)
T ss_pred CCCCCCCcHHHHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34588889998887766 66666 4444554 467788888889999999999887 5788889999
Q ss_pred HhhccccchhhhHHHHHhhHHHHHHHHHHHHHHHhcCch----hhHHHHHHHhhccC
Q psy15921 105 FGVHPVHTEAVAGLVGRADILSCIFYLVAILMFVHLPPR----SILRLKEIYGVTLK 157 (158)
Q Consensus 105 FalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~~~----~~~r~~~~~~~~~~ 157 (158)
|+..|.-=+. -+..--.-|..+|..+-+++.+|+.++ +..|+....+.+|+
T Consensus 92 fafS~sfW~~--Av~aEVYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~G 146 (178)
T PF11028_consen 92 FAFSDSFWFQ--AVEAEVYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCG 146 (178)
T ss_pred HHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHH
Confidence 9876532111 012223567788888888888888875 56777766666553
No 7
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=96.76 E-value=0.0092 Score=55.44 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=86.2
Q ss_pred CCcchhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhH
Q psy15921 45 GSYRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124 (158)
Q Consensus 45 ~~yRPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~l 124 (158)
.+|-|++....++-..+.|....+|.++-.+.=.+.++..|.+.|++.+ +..|+++|+++..-|-+....-|-..-.|.
T Consensus 2 ~FYpPL~yyl~a~l~~l~g~~~~Ay~l~~~L~~~l~~~~~Y~~~R~~~~-~~~A~l~aiLyl~~py~l~~~y~rgni~e~ 80 (616)
T PF10131_consen 2 RFYPPLPYYLGALLSLLFGNPIVAYKLFIFLAFFLGGLGMYFLGRRLGR-RKAAILAAILYLFSPYHLRNIYWRGNIPET 80 (616)
T ss_pred eeCCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhHHHHHHHHhcchHHHH
Confidence 3688999888888888888888899999888888899999999999888 899999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHhcCchhhHH
Q psy15921 125 LSCIFYLVAILMFVHLPPRSILR 147 (158)
Q Consensus 125 La~lF~L~al~~ylr~~~~~~~r 147 (158)
++..+.-+-+++..+..+++..|
T Consensus 81 lA~~llPlvll~~~~~~~~~~~r 103 (616)
T PF10131_consen 81 LAFALLPLVLLFLYRFIKKRKYR 103 (616)
T ss_pred HHHHHHHHHHHHHHHHHhcCCch
Confidence 88888777777766655544433
No 8
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.015 Score=54.60 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=70.4
Q ss_pred hhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHH
Q psy15921 55 FRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAI 134 (158)
Q Consensus 55 ~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al 134 (158)
..++...+|.++.+++.+|.++-.++..++|.++|++..++.++.+++++++..-.++-- ---.--|.+-.+|+.++.
T Consensus 98 ~g~~~~~~~~~y~~mR~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~--sR~ILLDs~LlfF~~~~~ 175 (699)
T COG1928 98 IGLTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTE--SRFILLDSFLLFFIVAAA 175 (699)
T ss_pred CCcccccCCCChHHHHHHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhh--hHHHHHHHHHHHHHHHHH
Confidence 334555566788899999999999999999999999999999999999999998766544 222335667788889999
Q ss_pred HHHHhcCc
Q psy15921 135 LMFVHLPP 142 (158)
Q Consensus 135 ~~ylr~~~ 142 (158)
+|++|.-.
T Consensus 176 y~~~r~~~ 183 (699)
T COG1928 176 YCFLRFHR 183 (699)
T ss_pred HHHHHHHh
Confidence 99998765
No 9
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=96.42 E-value=0.018 Score=51.81 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=64.2
Q ss_pred hhhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHHH
Q psy15921 58 NYAWSGFRPFA-YHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILM 136 (158)
Q Consensus 58 ~~~l~G~~p~~-~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ 136 (158)
-+.+||.+.+. .++.|+++-.+...++|.+.+++.++ ..|..++.++++-|..+--+ ..--.|..+.++..+++++
T Consensus 129 l~kifg~~~~~~~~llNil~~~~si~liy~i~k~lf~~-~~a~~a~~l~~l~~~~~~y~--~~~Ysd~~~l~~~~l~l~~ 205 (483)
T TIGR03766 129 LYKLFGETSWLFFDVVNIVLVDLSALILYKAVKKVFNK-KKAFVALYLFVLLLALSPYI--LIPYTDTWVLPFVSLFLFL 205 (483)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHH
Confidence 47789974554 49999999999999999999999987 56788888888877654432 2566788888888889888
Q ss_pred HHhcCc
Q psy15921 137 FVHLPP 142 (158)
Q Consensus 137 ylr~~~ 142 (158)
+....+
T Consensus 206 ~~~~~~ 211 (483)
T TIGR03766 206 YTVISK 211 (483)
T ss_pred HHHHHh
Confidence 776544
No 10
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.23 E-value=0.032 Score=49.83 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHHHHHhcCc
Q psy15921 70 HLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILMFVHLPP 142 (158)
Q Consensus 70 hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~~ 142 (158)
.++|.+.|.+.+..+|.+.++..+++..|..++++|.+.|.. +--.+.-+|.|.+++.+++++++.+.+.
T Consensus 116 ~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~Pas---iF~sa~YsEslf~~lsf~gl~~~~~~~~ 185 (443)
T PF04188_consen 116 ILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPAS---IFLSAPYSESLFALLSFAGLYLLERGRW 185 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHH---HHhhcCccHHHHHHHHHHHHHHHHhccH
Confidence 567899999999999999999998889999999999999985 4456788999999999999999887773
No 11
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=96.00 E-value=0.022 Score=54.11 Aligned_cols=101 Identities=19% Similarity=-0.003 Sum_probs=87.0
Q ss_pred CCCcchhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhh
Q psy15921 44 HGSYRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRAD 123 (158)
Q Consensus 44 ~~~yRPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~ 123 (158)
-.+|-|++++..++--.+-|+..-+|...-.+.- ..++++|.+.|...+++..|+++|++|..-|-|-+..-|=-.-..
T Consensus 67 lrYypPl~Yli~aal~~l~~d~~~t~~v~~~la~-llG~~~~~~~r~~g~t~~ia~I~alL~ltsp~~l~vlf~EGniP~ 145 (801)
T COG5617 67 LRYYPPLSYLIGAALNFLLGDVVTTYAVFLMLAF-LLGAGGWLLWRLRGRTGFIALISALLWLTSPENLKVLFIEGNIPR 145 (801)
T ss_pred ceecCcHHHHHHHHHHHhhcChhHHHHHHHHHHH-HHHHHHHHHHHhhccccchHHHHHHHHHhChhheEEEEecCcccH
Confidence 4678999999999988888966667877766666 999999999999999999999999999999999988777666677
Q ss_pred HHHHHHHHHHHHHHHhcCchhh
Q psy15921 124 ILSCIFYLVAILMFVHLPPRSI 145 (158)
Q Consensus 124 lLa~lF~L~al~~ylr~~~~~~ 145 (158)
.++.-|..+++.++.+..++|+
T Consensus 146 v~~i~f~pl~l~~l~~~~~~Gk 167 (801)
T COG5617 146 VLAIGFGPLALGLLERFLERGK 167 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 8888899999999998887664
No 12
>KOG2647|consensus
Probab=95.72 E-value=0.04 Score=49.18 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHHHHHhcCc
Q psy15921 70 HLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILMFVHLPP 142 (158)
Q Consensus 70 hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~~ 142 (158)
-++|+.+|+.++.++|.+.+++.+++..+.-|+++|...|.. +-.-++-+|.|-++|.+.+++...+.++
T Consensus 129 ~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAs---IF~ts~YSEsLfa~~s~~Gi~~~~~~~~ 198 (444)
T KOG2647|consen 129 VLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPAS---IFLTAGYSESLFALFSFLGILFLEKGRQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchH---hhhhHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 458999999999999999999999999999999999999975 4466889999999999999999998865
No 13
>COG5305 Predicted membrane protein [Function unknown]
Probab=94.81 E-value=0.12 Score=47.70 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=79.8
Q ss_pred cchhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHH
Q psy15921 47 YRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILS 126 (158)
Q Consensus 47 yRPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa 126 (158)
--|+-.+.-..-+++||.+-..-+-.+.++-++...++|.+.|.+.+. ..+.+++.++|+.|.++.. -.-.|+..++
T Consensus 97 ~~PLYfll~h~W~~lF~~s~~~~Rsls~L~~~~ai~~~y~l~r~l~~~-~~a~la~~~~AisP~~i~~--~qe~R~y~L~ 173 (552)
T COG5305 97 HPPLYFLLAHFWMALFGNSLLASRSLSALLSALAIPLVYWLGRELFGS-TTALLAAALMAISPFHIFY--SQEARSYALA 173 (552)
T ss_pred CCCeeehHHHHHHHHhchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHccChHHHHH--HHHHHHHHHH
Confidence 344555555566789998888889999999999999999999999987 4555999999999999876 6788999999
Q ss_pred HHHHHHHHHHHHhcCc
Q psy15921 127 CIFYLVAILMFVHLPP 142 (158)
Q Consensus 127 ~lF~L~al~~ylr~~~ 142 (158)
..+.+++..|.+++-+
T Consensus 174 ~~~~lis~~~Ll~ai~ 189 (552)
T COG5305 174 VATTLISATLLLRAIR 189 (552)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999888775
No 14
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=94.12 E-value=0.39 Score=42.64 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=76.3
Q ss_pred CCcchhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhH
Q psy15921 45 GSYRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124 (158)
Q Consensus 45 ~~yRPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~l 124 (158)
....|+-.+.- --|++|+ +|..-=++..++=.+.+..+|+++|+...++..|++.+++++++|.-..++. --=..+.
T Consensus 40 ~HfsPil~ll~-Ply~l~P-s~~tLli~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~-~dFH~~~ 116 (449)
T PF09852_consen 40 DHFSPILYLLA-PLYRLFP-SPLTLLIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANL-FDFHPVA 116 (449)
T ss_pred ccchHHHHHHH-HHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhh-CCCcHHH
Confidence 34556655544 4588886 8999999999999999999999999998778999999999999998776643 2224455
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHhhccC
Q psy15921 125 LSCIFYLVAILMFVHLPPRSILRLKEIYGVTLK 157 (158)
Q Consensus 125 La~lF~L~al~~ylr~~~~~~~r~~~~~~~~~~ 157 (158)
++.-+.+.+++++.| ++...--+..+..+++|
T Consensus 117 ~avPll~~~~~~~~~-~r~~~~~~~~ll~llvK 148 (449)
T PF09852_consen 117 FAVPLLLWALYALER-RRWRLFILWALLLLLVK 148 (449)
T ss_pred HHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 555566677775554 33333334444444444
No 15
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.47 Score=43.20 Aligned_cols=107 Identities=22% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCCcchhHh--hhhhhhhhhc---CCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHH
Q psy15921 44 HGSYRPLSV--LTFRLNYAWS---GFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGL 118 (158)
Q Consensus 44 ~~~yRPL~~--ls~~l~~~l~---G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi 118 (158)
.-+|||.-. +.+-.|+++| |.+-+--+++-.+...+..... ++.|+-+++ ...+..+.+-+..|+-+.= .-
T Consensus 57 aw~YrPi~HGPfL~hvn~avF~~lGasDataRlvvAv~G~llpL~a-wL~R~rL~d-~evlal~~LLA~sPvlVYY--SR 132 (556)
T COG4745 57 AWSYRPIYHGPFLYHVNYAVFGLLGASDATARLVVAVTGVLLPLTA-WLYRTRLGD-KEVLALATLLAFSPVLVYY--SR 132 (556)
T ss_pred cceecccccCchhhhhhhhhhhhcccchhhhhhhHHHhhhHHHHHH-HHHHHhccc-hHHHHHHHHHhcChhhhhH--HH
Confidence 456788754 3455556654 4466666766655555544444 444444443 3445566677888876543 34
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHhh
Q psy15921 119 VGRADILSCIFYLVAILMFVHLPPRSILRLKEIYGV 154 (158)
Q Consensus 119 ~~R~~lLa~lF~L~al~~ylr~~~~~~~r~~~~~~~ 154 (158)
=-|+|++-+.|.++++....|+.++++.|+....++
T Consensus 133 FmR~Dl~la~ftl~aVg~~vR~lDt~R~~yL~~sA~ 168 (556)
T COG4745 133 FMRNDLLLAAFTLLAVGFAVRYLDTERFRYLYASAV 168 (556)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcccccchhhhhh
Confidence 579999999999999999999999998888776655
No 16
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=1 Score=39.78 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=72.2
Q ss_pred hhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHH
Q psy15921 49 PLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCI 128 (158)
Q Consensus 49 PL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~l 128 (158)
||.---.++.-.+ -+.|.-+++=+++.|.+...++++..+++.++..+++.+|++-|++|.--.. -.++--|+-.++
T Consensus 138 pLgKyIiAl~ml~-~d~Pl~WRiPsiIe~~liliiv~~~~~ki~~~~la~~~aA~~~alDp~l~am--g~VAMLDIhvaF 214 (438)
T COG4346 138 PLGKYIIALGMLI-VDKPLYWRIPSIIEGALILIIVYFVAYKIARSPLAGLIAALLAALDPLLRAM--GGVAMLDIHVAF 214 (438)
T ss_pred cHHHHHHHHHHHH-hcCCceeeccHHHhhhHHHHHHHHHHHHHhcCchHHHHHHHHHhhCcHHHHh--cchhHHHHHHHH
Confidence 4554444443333 3899999999999999999999999999999888888999999999975433 567777888999
Q ss_pred HHHHHHHHHHhcC
Q psy15921 129 FYLVAILMFVHLP 141 (158)
Q Consensus 129 F~L~al~~ylr~~ 141 (158)
|..+.+++..-.|
T Consensus 215 FtaL~~~fl~~~R 227 (438)
T COG4346 215 FTALFMYFLANDR 227 (438)
T ss_pred HHHHHHHHHhcCC
Confidence 9988888877554
No 17
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=89.84 E-value=0.18 Score=44.43 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHHHHHhcCchhh--HHHHH
Q psy15921 73 NIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILMFVHLPPRSI--LRLKE 150 (158)
Q Consensus 73 nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~~~~~--~r~~~ 150 (158)
--++-.+.+..+|.+.|++.+ +.++++||++.++-|.+.+=..-=.-..|.+..+|.++++++++++.+++. ..+..
T Consensus 101 ppvl~~L~vi~~y~~~~~~~~-~~~Gl~aA~l~a~~p~~l~RT~~G~~D~~~~~~~f~~l~~~~~~~a~~~~~~~~~~~~ 179 (483)
T PF02516_consen 101 PPVLGALTVIPVYLLGRRLGG-RKAGLLAAFLLAISPGYLSRTMAGFYDHHMLELFFPLLIIYFFLLALKSAKRPLIYAV 179 (483)
T ss_dssp HHHHGGGGHHHHHHHHHHTT--HHHHHHHHHHHTTSHHHHHTSSTT--SGGGGTTHHHHHHHHHHHHHHHH------THH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHhHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 344566777888999977644 589999999999999977654333447888999999999999998777654 44544
Q ss_pred HHhh
Q psy15921 151 IYGV 154 (158)
Q Consensus 151 ~~~~ 154 (158)
++|+
T Consensus 180 laGl 183 (483)
T PF02516_consen 180 LAGL 183 (483)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 18
>KOG3359|consensus
Probab=88.62 E-value=4.3 Score=38.74 Aligned_cols=93 Identities=19% Similarity=0.106 Sum_probs=71.7
Q ss_pred cchhHhhhhhhhhhhcCC-----------------CchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhcc
Q psy15921 47 YRPLSVLTFRLNYAWSGF-----------------RPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHP 109 (158)
Q Consensus 47 yRPL~~ls~~l~~~l~G~-----------------~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP 109 (158)
.-|+.-..+++.-.+.|. +-.+++..|..+-.++.-++|..++.+..++.+|.++|++++..-
T Consensus 83 HPPlgKmL~al~g~L~GydG~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~y~t~~~~~~s~~aa~l~allv~~dn 162 (723)
T KOG3359|consen 83 HPPLGKMLIALVGYLAGYDGSFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLAYLTLKELGFSRLAAALAALLVLFDN 162 (723)
T ss_pred CchHHHHHHHHHHHHhCCCCCccccCCCccCCCCCchHhHHHHHHHHHhHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Confidence 356666666665555442 334889999999999999999999999999999999999998875
Q ss_pred ccchhhhHHHHHhhHHHHHHHHHHHHHHHhcC
Q psy15921 110 VHTEAVAGLVGRADILSCIFYLVAILMFVHLP 141 (158)
Q Consensus 110 ~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~ 141 (158)
-.+--=..| --|.+-.+|+.++.+|++|.-
T Consensus 163 s~~T~sr~I--LLDs~Llff~~~~~y~~~r~~ 192 (723)
T KOG3359|consen 163 SLVTLSRFI--LLDSMLLFFMAAAVYCFVRFY 192 (723)
T ss_pred cchhhhhHH--HHhHHHHHHHHHHHHHHHHHH
Confidence 554332222 246677889999999999876
No 19
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=85.51 E-value=12 Score=29.17 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=31.6
Q ss_pred HHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHHHHHhcCc
Q psy15921 98 AWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILMFVHLPP 142 (158)
Q Consensus 98 A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~~ 142 (158)
......+.+..|+ .++ -..++.|++.+++.+++++++.|.|.
T Consensus 55 ~~~~~~~~~~~p~-~~~--~~~gq~~~l~~~l~~~a~~~~~r~r~ 96 (241)
T PF09594_consen 55 LLLALLLLAFPPV-LSA--LGLGQFDLLVAALLLLALLALRRGRP 96 (241)
T ss_pred HHHHHHHHHHHHH-HHH--HHhccHHHHHHHHHHHHHHHHHcCCC
Confidence 3445567778888 333 34589999999999999999986654
No 20
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=83.45 E-value=2.2 Score=40.76 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=73.3
Q ss_pred cchhHhhhhhhhhhhcC-CCch----hHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHH
Q psy15921 47 YRPLSVLTFRLNYAWSG-FRPF----AYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGR 121 (158)
Q Consensus 47 yRPL~~ls~~l~~~l~G-~~p~----~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R 121 (158)
|-|+-...-..-+..++ ..|. ..-+.-.++-.+.++.+|.+.|++.++ ..++++|++.++-|-++.-..-=..|
T Consensus 87 ~~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~PailG~L~vI~vYl~~r~i~~~-~~g~~aa~ll~~~p~~~~rt~~G~~d 165 (773)
T COG1287 87 FPPLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIPVYLLGRRILGD-KTGLLAALLLALAPGYLSRTVAGFYD 165 (773)
T ss_pred CCchHHHHHHHHHHHHHccCchHHHHHHHHhhHHHhhHHHHHHHHHHHHHhcc-hhhHHHHHHHHHhhHHHHHhhcCccC
Confidence 55555444444344433 2441 233445567778889999999999986 88889999988888877664444678
Q ss_pred hhHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHhhcc
Q psy15921 122 ADILSCIFYLVAILMFVHLPP-----RSILRLKEIYGVTL 156 (158)
Q Consensus 122 ~~lLa~lF~L~al~~ylr~~~-----~~~~r~~~~~~~~~ 156 (158)
.+..-.+|.+++++.+.++.+ ++...+..++|+++
T Consensus 166 ~~~~~~~~~~~~l~~~~~aL~~~~~~~~~~~~~~lag~~~ 205 (773)
T COG1287 166 TDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLAL 205 (773)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 888777777777777766665 35566666666654
No 21
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=80.24 E-value=26 Score=29.15 Aligned_cols=87 Identities=21% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCcchhHhhhhhhhhhhcCC----CchhHHHHHHHHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHhhccccchhhhHHH
Q psy15921 45 GSYRPLSVLTFRLNYAWSGF----RPFAYHLTNIGLHCLCTALVHLLALSVLP-THRAAWVASALFGVHPVHTEAVAGLV 119 (158)
Q Consensus 45 ~~yRPL~~ls~~l~~~l~G~----~p~~~hl~nlllH~~~~~Lv~~l~~~l~~-~~~~A~laallFalHP~~~eaV~wi~ 119 (158)
...||+..+...+- +|. .|+.-.+..+++=.+.++++ .+.... +...+.+.++++...|.-.|.-.+.-
T Consensus 27 ~~GR~~~~~~~~~l---~~~~~~~~~pl~~iLs~~~la~s~~~~---~~~~~~~~~~~~~l~~~~~~~~P~~~~~lsy~~ 100 (319)
T PF14264_consen 27 SSGRPLLDLLMKLL---FGTGNYDLPPLPQILSILFLALSAVLL---VRLFDIKSSFISVLFSLLFISSPFFLENLSYRF 100 (319)
T ss_pred hcCchHHHHHHHHH---hccCCCchhHHHHHHHHHHHHHHHHHH---HHHhCccchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45899998887654 232 24444444444444444443 333332 34678889999999999999988876
Q ss_pred HHhhHH-HHHHHHHHHHHH
Q psy15921 120 GRADIL-SCIFYLVAILMF 137 (158)
Q Consensus 120 ~R~~lL-a~lF~L~al~~y 137 (158)
+-.+.. +.++..++.++.
T Consensus 101 ~s~~~~ls~~l~~la~~~~ 119 (319)
T PF14264_consen 101 DSLPMALSLLLAVLAFYFL 119 (319)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 654444 333334444433
No 22
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=77.27 E-value=5.8 Score=35.60 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=77.6
Q ss_pred CCcchhHhhhhhhhhhh-cCCCch--hHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHH
Q psy15921 45 GSYRPLSVLTFRLNYAW-SGFRPF--AYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGR 121 (158)
Q Consensus 45 ~~yRPL~~ls~~l~~~l-~G~~p~--~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R 121 (158)
..|-|+....-.+.-.+ .+ .+. .=.+.|...|...+-.+|.+.++..+....|..+..++-..|.-.-.++ +-++
T Consensus 93 ~~~~p~~~y~i~ii~~L~~~-~~~~l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~i~~~~~P~~i~~s~-iw~~ 170 (420)
T COG5542 93 ADYFPLYLYWIRIINKLLSS-LYFILAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVIYNSA-IWGQ 170 (420)
T ss_pred cccCchHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheEEEEEeccHHHhhhh-HHhc
Confidence 34555555554444444 44 222 3467888999999999999999999876777777777777776543322 3458
Q ss_pred hhHHHHHHHHHHHHHHHhcCchhhHHHHHHHhhccCC
Q psy15921 122 ADILSCIFYLVAILMFVHLPPRSILRLKEIYGVTLKP 158 (158)
Q Consensus 122 ~~lLa~lF~L~al~~ylr~~~~~~~r~~~~~~~~~~~ 158 (158)
.|.+-+++..++++.+.... ..+.-+++-+|+++||
T Consensus 171 teSlf~ll~~l~iyf~~~k~-~~~a~~~faLa~l~Rs 206 (420)
T COG5542 171 TESLFTLLSILAIYFFSIKK-QIPALFFFALATLFRS 206 (420)
T ss_pred cchHHHHHHHHHHHHHHccc-hhHHHHHHHHHHHhcc
Confidence 99999999999999887543 4455666666666665
No 23
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=76.84 E-value=28 Score=29.79 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=57.3
Q ss_pred cchhHhhhhhhh---hhhcCCCch----hHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHH
Q psy15921 47 YRPLSVLTFRLN---YAWSGFRPF----AYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLV 119 (158)
Q Consensus 47 yRPL~~ls~~l~---~~l~G~~p~----~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~ 119 (158)
|-|+.++--++- -+++|.++. .-++.|+++.++.+.+...+.+ +.+ ...++.++-|....-.+.++
T Consensus 95 y~p~~Ylp~alGi~ig~ll~l~~~~~~~l~Rl~nll~~~~l~~~Ai~~~p---~~k----~l~~~i~l~Pm~~~~~aS~s 167 (389)
T PF09913_consen 95 YPPLYYLPQALGIWIGRLLGLSVLVMYYLGRLFNLLLYALLVYLAIKLAP---RGK----WLLALIALLPMTLFQAASVS 167 (389)
T ss_pred CCcHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc---hhH----HHHHHHHHHHHHHHHHHhcC
Confidence 888887776652 334566665 3488899888766655444442 222 22566677799888888888
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q psy15921 120 GRADILSCIFYLVAILMFV 138 (158)
Q Consensus 120 ~R~~lLa~lF~L~al~~yl 138 (158)
.=.-..++.+.+.++++..
T Consensus 168 ~D~~~~~~~~l~~a~~l~~ 186 (389)
T PF09913_consen 168 YDGLIIALAFLFIALLLRL 186 (389)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8777777777777777776
No 24
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=74.36 E-value=44 Score=30.56 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=62.5
Q ss_pred CCCcchhHhhhhhhhhhhcCCCch----hHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccc-hhhhHH
Q psy15921 44 HGSYRPLSVLTFRLNYAWSGFRPF----AYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHT-EAVAGL 118 (158)
Q Consensus 44 ~~~yRPL~~ls~~l~~~l~G~~p~----~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~-eaV~wi 118 (158)
..+|-|+...-....-.+.|+|+. .++++.++==++..+.+-+++|+.-.++..|+. +.+.+|+-. |-|..
T Consensus 140 ~aPYGPl~l~i~~~v~~l~g~~i~~~v~~~Rl~~l~g~~l~~w~~~rLar~~g~~~~~AlW---L~~~NPLviihlvgg- 215 (470)
T TIGR03459 140 TTPYGPLHLLVGQAITTVTGDNVTAGTLAFKLLSLPGLAVMVWAVPKLATHLGGNPTVALW---LGVLNPLVVIHLIGG- 215 (470)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH---HHHcCchhhhhhhcc-
Confidence 578999999999998999998877 478877777777777777777776554333322 234677532 33222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcC
Q psy15921 119 VGRADILSCIFYLVAILMFVHLP 141 (158)
Q Consensus 119 ~~R~~lLa~lF~L~al~~ylr~~ 141 (158)
.-+|.++..|.+++++.-.|.+
T Consensus 216 -~HnealM~gl~l~gl~~~~r~~ 237 (470)
T TIGR03459 216 -MHNEMLMVGLVSAGILLALKRR 237 (470)
T ss_pred -hhHHHHHHHHHHHHHHHHHhcc
Confidence 3456677777777777766544
No 25
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=71.00 E-value=46 Score=29.13 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=69.2
Q ss_pred cchhHhhhhhhhh---hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcch-----------hhHHHHHHHHHhhccccc
Q psy15921 47 YRPLSVLTFRLNY---AWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPT-----------HRAAWVASALFGVHPVHT 112 (158)
Q Consensus 47 yRPL~~ls~~l~~---~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~-----------~~~A~laallFalHP~~~ 112 (158)
+-|+-...+..-. --.-.++....+.-++.-++.+.+++.+.+...++ ...+.+.++++..+|...
T Consensus 58 ~~PLlL~l~~~l~~~~~~~~~~~~~~~llf~~~Dl~~A~~L~~i~~~~~~~~~~~~~~~~~~~~~~~lv~~~YLfNP~tI 137 (382)
T PF06728_consen 58 QPPLLLALFSFLLKSSPNSPNSPILISLLFILVDLLIAWLLYRIAKSYQKQESKRQKSPNEKSSSPWLVAAFYLFNPLTI 137 (382)
T ss_pred CcCHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCchhcccchHHHHHHHHHCHHHH
Confidence 4566655552221 11124777888888889999999999998666542 157889999999999988
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHhcC
Q psy15921 113 EAVAGLVGRADILSCIFYLVAILMFVHLP 141 (158)
Q Consensus 113 eaV~wi~~R~~lLa~lF~L~al~~ylr~~ 141 (158)
= +.+++-.+....++.+.++++-.|++
T Consensus 138 l--scva~ST~~f~nl~i~~sl~~a~~g~ 164 (382)
T PF06728_consen 138 L--SCVALSTTVFTNLFILLSLYFAVKGN 164 (382)
T ss_pred H--HHHhcccHHHHHHHHHHHHHHHHcCC
Confidence 5 47888899999999999999888543
No 26
>PLN02841 GPI mannosyltransferase
Probab=67.31 E-value=33 Score=31.13 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHHHHHhcC
Q psy15921 73 NIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILMFVHLP 141 (158)
Q Consensus 73 nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~ 141 (158)
=.+.=++++.+++.+.++-..+...+...+.+|..+|.-.-. ...+-.|.+..++.+.++++-.+++
T Consensus 89 F~l~Dll~a~ll~~il~~~~~~~~~~~~~a~~wL~NPlti~i--strGSse~i~~~lvl~~L~~l~~g~ 155 (440)
T PLN02841 89 FSAADLLVGLFIHTILRLRGVPEKVCTWSVMVWLFNPFTFTI--GTRGNCEPIVCAVILWILICLMNGR 155 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHhCcHHHHH--hcccchHHHHHHHHHHHHHHHHcCC
Confidence 334445666666666654322233455668899999997744 7788899999999999999887655
No 27
>COG3463 Predicted membrane protein [Function unknown]
Probab=56.64 E-value=1.2e+02 Score=27.78 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=72.6
Q ss_pred CCCcchhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhh
Q psy15921 44 HGSYRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRAD 123 (158)
Q Consensus 44 ~~~yRPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~ 123 (158)
+..++|.-.+-+= -|.++. +|..-=+..-+.=...+...|+++++.+.....|+.-+.++.+.|. .|.+.|----.+
T Consensus 67 ~vhfqpilfLlyP-~Y~l~P-sp~~Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~-i~gi~~FDFH~m 143 (458)
T COG3463 67 GVHFQPILFLLYP-FYKLFP-SPETLLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPY-IEGINLFDFHPM 143 (458)
T ss_pred eeehhhHHHHHHH-HHHhCC-cHHHHHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchh-ccCchhhhcchH
Confidence 3457887777765 366654 6666555555666778899999999999988999999999999995 577777776777
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy15921 124 ILSCIFYLVAILMFVHLP 141 (158)
Q Consensus 124 lLa~lF~L~al~~ylr~~ 141 (158)
.++-.+++.|.+.+.|..
T Consensus 144 ~~avp~~~~a~~f~~r~k 161 (458)
T COG3463 144 AFAVPLFLLAYYFLKRKK 161 (458)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 788888888888776553
No 28
>cd03500 SQR_TypeA_SdhD_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial
Probab=38.80 E-value=58 Score=22.84 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=8.8
Q ss_pred hhhhHHHHHhhHHHHHHHHH
Q psy15921 113 EAVAGLVGRADILSCIFYLV 132 (158)
Q Consensus 113 eaV~wi~~R~~lLa~lF~L~ 132 (158)
|+.+|+.||-.-...++++.
T Consensus 1 ~~~~w~~qRiTgv~L~~~l~ 20 (106)
T cd03500 1 ESLAWLFQRITGVFLVFLLA 20 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 29
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=36.06 E-value=4.1e+02 Score=25.65 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=61.5
Q ss_pred hhhhhhhhhhcCCCchhH-HHHHHHHHHHHHHHHHHHHHHHc-chhhHHHHHHHHHhhccccchhhhHHHHHhhHHHHHH
Q psy15921 52 VLTFRLNYAWSGFRPFAY-HLTNIGLHCLCTALVHLLALSVL-PTHRAAWVASALFGVHPVHTEAVAGLVGRADILSCIF 129 (158)
Q Consensus 52 ~ls~~l~~~l~G~~p~~~-hl~nlllH~~~~~Lv~~l~~~l~-~~~~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF 129 (158)
+-.|..--.+.|..+|.. ++==-++-.+..+-++++++++. +.....+++|+.|++.|--.+.+..||. |.+..++
T Consensus 58 ~G~Ff~l~~~lglP~Wi~QRLWwallL~vaf~G~~rLa~~L~igs~~~r~~Aa~~YaLsPr~Lttlg~iSs--e~lP~al 135 (680)
T PF11847_consen 58 MGPFFALGDLLGLPDWITQRLWWALLLTVAFWGALRLARALGIGSPASRVLAAVAYALSPRVLTTLGAISS--ETLPMAL 135 (680)
T ss_pred chHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhChHHHHHHHHHHH--HHHHHHH
Confidence 345544455567766654 65555566666677778888883 4556789999999999999999888875 5555555
Q ss_pred HHHHHHHHHhcCc
Q psy15921 130 YLVAILMFVHLPP 142 (158)
Q Consensus 130 ~L~al~~ylr~~~ 142 (158)
.=.-++..++.++
T Consensus 136 ~PWvLlPlv~~~r 148 (680)
T PF11847_consen 136 APWVLLPLVRALR 148 (680)
T ss_pred hhHHHHHHHHhhc
Confidence 5555556665554
No 30
>KOG2292|consensus
Probab=30.91 E-value=1.4e+02 Score=28.40 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHhhccccch-hhhHHHHHhhHHHHHHHHHHHHHHHhcCchhhHHHH
Q psy15921 79 LCTALVHLLALSVLPTHRAAWVASALFGVHPVHTE-AVAGLVGRADILSCIFYLVAILMFVHLPPRSILRLK 149 (158)
Q Consensus 79 ~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~e-aV~wi~~R~~lLa~lF~L~al~~ylr~~~~~~~r~~ 149 (158)
..++..|.+.+.+-.. .++++||.+-|+-|--+. +|+- |--+|-.+-+-.+.+.+.|+|+.+.|..-+-
T Consensus 129 ~TsiaTY~ltkEl~~~-gaGL~AA~fiaivPgYiSRSVAG-SYDNE~IAIfal~~T~ylwiKavkTGSifwa 198 (751)
T KOG2292|consen 129 LTSIATYLLTKELKSA-GAGLLAAAFIAIVPGYISRSVAG-SYDNEGIAIFALLFTYYLWIKAVKTGSIFWA 198 (751)
T ss_pred hHHHHHHHHHHHHhcc-cccHHHHHHHhhCcccccccccc-cccchHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 4556677777776553 788999999999996543 2222 3346777777778899999999999865443
No 31
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=29.56 E-value=2.2e+02 Score=20.49 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHcchh---------hHHHHHHHHHhhccccchhhhHHHHHhhHHHHHHHHHHHH
Q psy15921 78 CLCTALVHLLALSVLPTH---------RAAWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAIL 135 (158)
Q Consensus 78 ~~~~~Lv~~l~~~l~~~~---------~~A~laallFalHP~~~eaV~wi~~R~~lLa~lF~L~al~ 135 (158)
++..++++.+.+++.+++ ....+..+++++.|--.+.++-..|-......+|+++-+.
T Consensus 10 ~~~v~~~~~ii~~vr~~~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf~~~i~~ 76 (115)
T PF10066_consen 10 IIAVLFLLFIIRLVRKRKLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLFYLGILF 76 (115)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 344444555555555431 2344577789999999999988876666655555544433
No 32
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=27.96 E-value=2.7e+02 Score=26.43 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=39.4
Q ss_pred chhHhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHhhcc
Q psy15921 48 RPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTH--RAAWVASALFGVHP 109 (158)
Q Consensus 48 RPL~~ls~~l~~~l~G~~p~~~hl~nlllH~~~~~Lv~~l~~~l~~~~--~~A~laallFalHP 109 (158)
.|+..+++.+... .-|..+-...++=-.++++..+..+|+..+++ ..++++|++++..-
T Consensus 74 sPf~ll~~lfp~~---~~~~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg 134 (843)
T PF09586_consen 74 SPFNLLSLLFPAS---QMPYAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSG 134 (843)
T ss_pred CHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 7887777644311 12344555544444666677777888888766 89999999998763
No 33
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=24.00 E-value=2.6e+02 Score=19.51 Aligned_cols=35 Identities=17% Similarity=0.454 Sum_probs=22.5
Q ss_pred HHHHhhccccch--hhhHH-HHHhhHHHHHHHHHHHHH
Q psy15921 102 SALFGVHPVHTE--AVAGL-VGRADILSCIFYLVAILM 136 (158)
Q Consensus 102 allFalHP~~~e--aV~wi-~~R~~lLa~lF~L~al~~ 136 (158)
+.-|+.||++.| .|..| +.-+++..++.+|++..+
T Consensus 29 ~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl~~LaTfiF 66 (82)
T PF11282_consen 29 AASFASKPIHSSNYIAQNIASAVRTLVVGLCYLATFIF 66 (82)
T ss_pred HHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999964 33444 445667777777766554
No 34
>KOG3356|consensus
Probab=21.67 E-value=44 Score=25.18 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=25.7
Q ss_pred cCeEeeChhhhhhCcCCCCCCChhhhhhhcccCCCCCCCCCCCCcchhHhhhhhhhhh
Q psy15921 3 ITFLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYA 60 (158)
Q Consensus 3 ~~Fv~DD~~~I~~N~~v~~~~~l~~i~~~~~w~~~~~~~~~~~~yRPL~~ls~~l~~~ 60 (158)
++++|| .|+|-|.+.+.++ .++..||+..++...|-+
T Consensus 45 ~g~iyd---vivepp~igs~~d------------------~~g~~rpv~fla~rvngq 81 (147)
T KOG3356|consen 45 GGIIYD---VIVEPPSIGSMTD------------------EHGHQRPVAFLAGRVNGQ 81 (147)
T ss_pred ccEEEE---EEecCCCCCcccc------------------cCCcCcceEEEeccccce
Confidence 577787 4666666665321 367889999998877654
No 35
>PF10476 DUF2448: Protein of unknown function C-terminus (DUF2448) ; InterPro: IPR018861 The proteins in the entry are restricted to chordates and their function is not known.
Probab=20.64 E-value=3.3e+02 Score=22.18 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhcc-------ccchhhhHHHHHhhHHHHHHHHHHHHHHHhcCc
Q psy15921 74 IGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHP-------VHTEAVAGLVGRADILSCIFYLVAILMFVHLPP 142 (158)
Q Consensus 74 lllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP-------~~~eaV~wi~~R~~lLa~lF~L~al~~ylr~~~ 142 (158)
+.+.++.+.+..+++-++.-+|+-|+.+-+.|.+-- +++++-.|+-.-|-.-..+.+|.++-.-+.-|+
T Consensus 113 v~lGLlTCLlAmllAGriRLRRIDafas~LW~l~l~LhLaE~Yl~~~~psWldt~Kf~ttSlCCLVgftAAvATrK 188 (204)
T PF10476_consen 113 VSLGLLTCLLAMLLAGRIRLRRIDAFASVLWFLVLGLHLAEQYLQADSPSWLDTLKFSTTSLCCLVGFTAAVATRK 188 (204)
T ss_pred ehHHHHHHHHHHHHhcchhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 344555566666666665555555655555554443 457888898666555555555555555554444
Done!