Query psy15921
Match_columns 158
No_of_seqs 103 out of 459
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 16:35:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 95.9 0.006 2E-07 56.4 4.4 109 46-155 79-188 (724)
2 2y8t_B RON2, rhoptry NECK prot 14.4 17 0.00057 20.4 -1.4 9 150-158 21-29 (37)
3 1xrd_A LH-1, light-harvesting 9.5 3.5E+02 0.012 16.4 3.4 37 121-157 11-47 (52)
4 2wdq_C Succinate dehydrogenase 8.5 2.9E+02 0.01 19.1 3.2 6 87-92 28-33 (129)
5 2l2t_A Receptor tyrosine-prote 7.1 2.7E+02 0.0093 16.2 2.0 14 130-143 26-39 (44)
6 2ks1_B Epidermal growth factor 7.0 2.7E+02 0.0093 16.2 2.0 14 130-143 27-40 (44)
7 1vk5_A Expressed protein; stru 6.5 1.2E+02 0.0041 22.4 0.3 15 107-121 111-125 (157)
8 1pfi_A Major coat protein of P 5.4 5.4E+02 0.019 15.0 3.5 22 69-90 24-45 (46)
9 2l9u_A Receptor tyrosine-prote 4.8 3.7E+02 0.013 15.1 1.6 16 127-142 19-34 (40)
10 1jdm_A Sarcolipin; helix, memb 4.5 5.4E+02 0.018 13.8 2.2 18 72-89 10-27 (31)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=95.90 E-value=0.006 Score=56.40 Aligned_cols=109 Identities=12% Similarity=0.016 Sum_probs=80.1
Q ss_pred CcchhHhhhhhhhhhhcCCCch-hHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHhhccccchhhhHHHHHhhH
Q psy15921 46 SYRPLSVLTFRLNYAWSGFRPF-AYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALFGVHPVHTEAVAGLVGRADI 124 (158)
Q Consensus 46 ~yRPL~~ls~~l~~~l~G~~p~-~~hl~nlllH~~~~~Lv~~l~~~l~~~~~~A~laallFalHP~~~eaV~wi~~R~~l 124 (158)
++.|+-...-+.-+.++|.+.. .....--++-.+.+..+|.+.+++.++ .++++||++.++-|.+..=..-=.-..|.
T Consensus 79 p~g~~~~~l~a~l~~i~g~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~-~aGl~AAll~ai~P~~i~RS~aG~~D~e~ 157 (724)
T 3rce_A 79 YFGSSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLT-TYGFIAALLGSIANSYYNRTMSGYYDTDM 157 (724)
T ss_dssp CTTCHHHHHHHHHHHSCSSCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCH-HHHHHHHHHHTTSHHHHHTSSTTCCSGGG
T ss_pred CCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3444333333444667786654 345666677788889999999998774 68999999999999864421112457888
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHhhc
Q psy15921 125 LSCIFYLVAILMFVHLPPRSILRLKEIYGVT 155 (158)
Q Consensus 125 La~lF~L~al~~ylr~~~~~~~r~~~~~~~~ 155 (158)
++.+|.++++++++++.+++..++-.++|+.
T Consensus 158 l~i~~~ll~~~~~i~alk~~~~~~~~lagl~ 188 (724)
T 3rce_A 158 LVLVLPMLILLTFIRLTINKDIFTLLLSPIF 188 (724)
T ss_dssp GTTHHHHHHHHHHHHHHHHCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999998887777776664
No 2
>2y8t_B RON2, rhoptry NECK protein 2; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8s_B*
Probab=14.36 E-value=17 Score=20.39 Aligned_cols=9 Identities=67% Similarity=0.955 Sum_probs=5.3
Q ss_pred HHHhhccCC
Q psy15921 150 EIYGVTLKP 158 (158)
Q Consensus 150 ~~~~~~~~~ 158 (158)
+|+||+|.|
T Consensus 21 eilgvtcap 29 (37)
T 2y8t_B 21 EILGVTCAP 29 (37)
T ss_dssp TTTEEEECS
T ss_pred hhhcccccH
Confidence 456666655
No 3
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=9.50 E-value=3.5e+02 Score=16.42 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHhhccC
Q psy15921 121 RADILSCIFYLVAILMFVHLPPRSILRLKEIYGVTLK 157 (158)
Q Consensus 121 R~~lLa~lF~L~al~~ylr~~~~~~~r~~~~~~~~~~ 157 (158)
|..+.+..-++..+...+...-=+..||+|+-|--.|
T Consensus 11 rr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~~~~a~ 47 (52)
T 1xrd_A 11 RQALVGLATFLFVLALLIHFILLSTERFNWLEGASTK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCcccccCcccc
Confidence 3333333333333434444455566788887765333
No 4
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=8.49 E-value=2.9e+02 Score=19.05 Aligned_cols=6 Identities=17% Similarity=0.047 Sum_probs=2.4
Q ss_pred HHHHHc
Q psy15921 87 LALSVL 92 (158)
Q Consensus 87 l~~~l~ 92 (158)
+..|+.
T Consensus 28 ilhRiT 33 (129)
T 2wdq_C 28 ILHRVS 33 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.13 E-value=2.7e+02 Score=16.23 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCch
Q psy15921 130 YLVAILMFVHLPPR 143 (158)
Q Consensus 130 ~L~al~~ylr~~~~ 143 (158)
..++.++|+|.+++
T Consensus 26 i~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 26 VGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhhhhh
Confidence 34556677777654
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.04 E-value=2.7e+02 Score=16.16 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCch
Q psy15921 130 YLVAILMFVHLPPR 143 (158)
Q Consensus 130 ~L~al~~ylr~~~~ 143 (158)
..++.++|+|.++.
T Consensus 27 i~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 27 VALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhHh
Confidence 34566677776653
No 7
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=6.52 E-value=1.2e+02 Score=22.35 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=12.6
Q ss_pred hccccchhhhHHHHH
Q psy15921 107 VHPVHTEAVAGLVGR 121 (158)
Q Consensus 107 lHP~~~eaV~wi~~R 121 (158)
+||.-.||..|+++-
T Consensus 111 IhP~kAeatIW~vEE 125 (157)
T 1vk5_A 111 IHPTKAEATIWLVEE 125 (157)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHH
Confidence 799999999998654
No 8
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=5.42 E-value=5.4e+02 Score=14.97 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15921 69 YHLTNIGLHCLCTALVHLLALS 90 (158)
Q Consensus 69 ~hl~nlllH~~~~~Lv~~l~~~ 90 (158)
--++..+.-++.+.|+|.+.|+
T Consensus 24 ~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 24 GYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666677777777664
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.78 E-value=3.7e+02 Score=15.10 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhcCc
Q psy15921 127 CIFYLVAILMFVHLPP 142 (158)
Q Consensus 127 ~lF~L~al~~ylr~~~ 142 (158)
.+.+|.+-..|+|+|+
T Consensus 19 if~~lg~tflywrgrr 34 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEcccc
Confidence 3445567777887654
No 10
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.53 E-value=5.4e+02 Score=13.79 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15921 72 TNIGLHCLCTALVHLLAL 89 (158)
Q Consensus 72 ~nlllH~~~~~Lv~~l~~ 89 (158)
+|..+-+++..|.|.+.|
T Consensus 10 ~NFt~vLI~vlLi~llVr 27 (31)
T 1jdm_A 10 LNFTIVLITVILMWLLVR 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666554
Done!