Query psy15921
Match_columns 158
No_of_seqs 103 out of 459
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 16:36:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15921.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15921hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 15.0 62 0.0045 16.3 2.4 14 124-137 20-33 (34)
2 d1xrda1 f.3.1.1 (A:1-52) Light 9.2 1.7E+02 0.012 16.4 3.4 22 137-158 27-48 (52)
3 d1vk5a_ a.220.1.1 (A:) Hypothe 8.8 38 0.0028 22.4 0.3 15 107-121 76-90 (121)
4 d1kcza2 d.54.1.1 (A:1-160) bet 5.5 1.2E+02 0.0086 21.0 1.5 15 3-17 13-27 (160)
5 d1sgja_ c.1.12.5 (A:) Citrate 5.3 37 0.0027 24.3 -1.5 12 105-116 216-227 (231)
6 d1xqoa_ a.96.1.6 (A:) 8-oxogua 5.2 85 0.0062 23.3 0.6 19 105-123 209-227 (253)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 4.9 2.4E+02 0.018 14.4 2.2 23 96-118 5-27 (36)
8 d1kkoa2 d.54.1.1 (A:1-160) bet 4.8 1.2E+02 0.0086 21.0 1.1 15 3-17 13-27 (160)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 4.5 2.5E+02 0.018 13.6 2.5 15 113-127 2-16 (30)
10 d1z63a1 c.37.1.19 (A:432-661) 4.3 1.1E+02 0.0078 20.9 0.6 17 107-123 13-29 (230)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=15.04 E-value=62 Score=16.33 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q psy15921 124 ILSCIFYLVAILMF 137 (158)
Q Consensus 124 lLa~lF~L~al~~y 137 (158)
.|+.+|...++..|
T Consensus 20 slamlfvfialiay 33 (34)
T d1xmeb2 20 SLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45566666666555
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.25 E-value=1.7e+02 Score=16.38 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=13.2
Q ss_pred HHhcCchhhHHHHHHHhhccCC
Q psy15921 137 FVHLPPRSILRLKEIYGVTLKP 158 (158)
Q Consensus 137 ylr~~~~~~~r~~~~~~~~~~~ 158 (158)
.+...-=+.-||+|+-|--.+|
T Consensus 27 ~IHfiLLSt~rfNWleg~~~a~ 48 (52)
T d1xrda1 27 LIHFILLSTERFNWLEGASTKP 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSS
T ss_pred HHHHHHhccCccccccCCCcCc
Confidence 3444555667888877655443
No 3
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.81 E-value=38 Score=22.38 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=12.6
Q ss_pred hccccchhhhHHHHH
Q psy15921 107 VHPVHTEAVAGLVGR 121 (158)
Q Consensus 107 lHP~~~eaV~wi~~R 121 (158)
+||.-.||..|+++-
T Consensus 76 IhP~kAeatIW~vEe 90 (121)
T d1vk5a_ 76 IHPTKAEATIWLVEE 90 (121)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHH
Confidence 799999999998754
No 4
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=5.52 E-value=1.2e+02 Score=20.97 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.4
Q ss_pred cCeEeeChhhhhhCc
Q psy15921 3 ITFLSVHSRAILSNQ 17 (158)
Q Consensus 3 ~~Fv~DD~~~I~~N~ 17 (158)
++|-|||...|.+.+
T Consensus 13 sGfffdDQ~AIk~GA 27 (160)
T d1kcza2 13 TGFYFDDQRAIKKGA 27 (160)
T ss_dssp CSSEEECHHHHHTTC
T ss_pred ccceechHHHHHcCc
Confidence 689999999997643
No 5
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.31 E-value=37 Score=24.27 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=9.7
Q ss_pred Hhhccccchhhh
Q psy15921 105 FGVHPVHTEAVA 116 (158)
Q Consensus 105 FalHP~~~eaV~ 116 (158)
+++||-|+|.|.
T Consensus 216 ~~IHP~Qi~~in 227 (231)
T d1sgja_ 216 LCIHPAQVALAH 227 (231)
T ss_dssp EESSHHHHHHHH
T ss_pred eecCHhHHHHHH
Confidence 578999998863
No 6
>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=5.19 E-value=85 Score=23.32 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.8
Q ss_pred HhhccccchhhhHHHHHhh
Q psy15921 105 FGVHPVHTEAVAGLVGRAD 123 (158)
Q Consensus 105 FalHP~~~eaV~wi~~R~~ 123 (158)
..+-|+|..|+.|..+|.-
T Consensus 209 ~~IPpLHLDSilWl~g~~~ 227 (253)
T d1xqoa_ 209 TGIPPLHLDTLLWLAGRAV 227 (253)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred cCCCchhhhHHHHhccccc
Confidence 4789999999999999964
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.88 E-value=2.4e+02 Score=14.42 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhccccchhhhHH
Q psy15921 96 RAAWVASALFGVHPVHTEAVAGL 118 (158)
Q Consensus 96 ~~A~laallFalHP~~~eaV~wi 118 (158)
..+++|.+||.+=|...=-+.|+
T Consensus 5 ~Lg~iAt~LFilvPt~FLliLyv 27 (36)
T d2axtm1 5 QLGLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhe
Confidence 45777888887777544444444
No 8
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=4.84 E-value=1.2e+02 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.3
Q ss_pred cCeEeeChhhhhhCc
Q psy15921 3 ITFLSVHSRAILSNQ 17 (158)
Q Consensus 3 ~~Fv~DD~~~I~~N~ 17 (158)
.+|-|||...|.+.+
T Consensus 13 sGf~fdDQ~AIk~GA 27 (160)
T d1kkoa2 13 SSFYFDDQQAIKNGA 27 (160)
T ss_dssp EEEEEECHHHHHTTC
T ss_pred ccceechHHHHHcCc
Confidence 579999999997643
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.47 E-value=2.5e+02 Score=13.57 Aligned_cols=15 Identities=20% Similarity=0.084 Sum_probs=6.8
Q ss_pred hhhhHHHHHhhHHHH
Q psy15921 113 EAVAGLVGRADILSC 127 (158)
Q Consensus 113 eaV~wi~~R~~lLa~ 127 (158)
|+++|+---..+.+.
T Consensus 2 e~i~yv~ifac~i~l 16 (30)
T d2axtt1 2 ETITYVFIFACIIAL 16 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHH
Confidence 555555443333333
No 10
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.33 E-value=1.1e+02 Score=20.86 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=14.2
Q ss_pred hccccchhhhHHHHHhh
Q psy15921 107 VHPVHTEAVAGLVGRAD 123 (158)
Q Consensus 107 lHP~~~eaV~wi~~R~~ 123 (158)
++|-|.|+|.|+.++..
T Consensus 13 L~~yQ~~~v~~~~~~~~ 29 (230)
T d1z63a1 13 LRPYQIKGFSWMRFMNK 29 (230)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhh
Confidence 57899999999877765
Done!