RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15921
         (158 letters)



>gnl|CDD|235079 PRK02866, PRK02866, cyanate hydratase; Validated.
          Length = 147

 Score = 28.6 bits (65), Expect = 0.86
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 15/72 (20%)

Query: 98  AWVASALFGVHPVHTEAVAGLVGRADILSCIFYLVAILMFV----HLPPR-----SILRL 148
            WV +AL G   +     A  V  A++L      VA+L  V     LPP       I R 
Sbjct: 33  VWVTAALLGQMTL-PAEEAEKV--AELLGLDEDAVALLQEVPYRGSLPPAVPTDPLIYRF 89

Query: 149 KEI---YGVTLK 157
            E+   YG TLK
Sbjct: 90  YEMVQVYGTTLK 101


>gnl|CDD|131249 TIGR02194, GlrX_NrdH, Glutaredoxin-like protein NrdH.
          NrdH-redoxin is a representative of a class of small
          redox proteins that contain a conserved CXXC motif and
          are characterized by a glutaredoxin-like amino acid
          sequence and thioredoxin-like activity profile. Unlike
          other the glutaredoxins to which it is most closely
          related, NrdH aparrently does not interact with
          glutathione/glutathione reductase, but rather with
          thioredoxin reductase to catalyze the reduction of
          ribonucleotide reductase.
          Length = 72

 Score = 25.8 bits (57), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 47 YRPLSVLTFRLNYAWSGFRP 66
          +R + V+    + +WSGFRP
Sbjct: 46 FRQVPVIVADGDLSWSGFRP 65


>gnl|CDD|200540 cd11279, Sema_RON, The Sema domain, a protein interacting module,
           of RON Receptor Tyrosine Kinase.  RON receptor tyrosine
           kinase is a Macrophage-stimulating protein (MSP)
           receptor. Upon binding of MSP, RON is activated via
           autophosphorylation within its kinase catalytic domain,
           resulting in a wide range of effects, including
           proliferation, tubular morphogenesis, angiogenesis,
           cellular motility and invasiveness. By interacting with
           downstream signaling molecules, it regulates macrophage
           migration, phagocytosis, and nitric oxide production.
           RON has been implicated in cancers of the breast, colon,
           pancreas and ovaries because both splice variants and
           receptor overexpression have been identified in these
           tumors. The Sema domain is located at the N-terminus and
           contains four disulfide bonds formed by eight conserved
           cysteine residues. It serves as ligand recognition and
           binding model. RON is composed of an alpha-beta
           heterodimer. The extracellular alpha chain is disulfide
           linked to the beta chain, which contains an
           extracellular ligand-binding region with a Sema domain,
           a PSI domain and four IPT repeats, a transmembrane
           segment, and an intracellular catalytic tyrosine kinase
           domain. The Sema domain of RON may be necessary for
           receptor dimerization and activation.
          Length = 493

 Score = 27.1 bits (60), Expect = 4.5
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 24/67 (35%)

Query: 46  SYRPLSVLTFRLNYAWSGFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVASALF 105
           SY P SV   RL     GF P        G H          +L+VLP +  +      +
Sbjct: 182 SYSPRSVSIRRLKSDQDGFAP--------GFH----------SLTVLPKYLDS------Y 217

Query: 106 GVHPVHT 112
            +H VH+
Sbjct: 218 PIHYVHS 224


>gnl|CDD|182112 PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase;
           Provisional.
          Length = 474

 Score = 26.7 bits (59), Expect = 6.7
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 24  PLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLNYAWSGFRPF----AYHLT----NIG 75
           PL  L H D    P+   + +GS+R   ++ F   YA + F  F     Y LT    NI 
Sbjct: 128 PLVTLCHFD---VPMHLVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184

Query: 76  LH 77
           LH
Sbjct: 185 LH 186


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,280,058
Number of extensions: 746453
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 30
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)