RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15921
         (158 letters)



>1m15_A Arginine kinase, AK; creatine kinase, phosphagen kinase, transition
           state analog, adenosine triphosphate, transferas; HET:
           ARG ADP; 1.20A {Limulus polyphemus} SCOP: a.83.1.1
           d.128.1.2 PDB: 1m80_A 3m10_A 1bg0_A* 1p50_A* 1sd0_A*
           1p52_A* 1rl9_A* 2j1q_A
          Length = 357

 Score = 27.2 bits (59), Expect = 2.3
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 50  LSVLTFRLNYAWS---GFRPFAYHLTNIGLHCLCTALVHLLALSVLPTHRAAWVAS---A 103
           +  +  +L ++     GF    +  TN+G     +  + L  L+          +     
Sbjct: 250 VDNIESKLPFSHDDRFGF--LTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQ 307

Query: 104 LFGVHPVHTEAVAGLV 119
           + G    HTE+  G+ 
Sbjct: 308 VRGTRGEHTESEGGVY 323


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 3.1
 Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 16/75 (21%)

Query: 6   LSVHSRAILSNQDILPSTPLEALFHN---DFWGTPIKSPSSHGSYRPLSVLTFRLNYAWS 62
           +S+ S  +    ++      E   H    D +  P    S       L        Y + 
Sbjct: 426 ISIPSIYL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------QY-F- 473

Query: 63  GFRPFAYHLTNIGLH 77
            +    +HL NI   
Sbjct: 474 -YSHIGHHLKNIEHP 487


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 4.0
 Identities = 24/141 (17%), Positives = 35/141 (24%), Gaps = 49/141 (34%)

Query: 1    MIITFLSVHSRAILSNQDILPSTPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFR---- 56
            + I F     + I  N   +       +F     G               +  TFR    
Sbjct: 1672 LTIHFGGEKGKRIRENYSAM-------IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724

Query: 57   -LNYAWSGFRPFAYHLTNIGLHCLCT--ALVHLLALSVLPTHRAAWVASALFGVHPVHTE 113
             L+             T        T  AL     +       AA+      G+ P    
Sbjct: 1725 LLS------------ATQF------TQPAL---TLMEK-----AAFEDLKSKGLIPADA- 1757

Query: 114  AVAG--------LVGRADILS 126
              AG        L   AD++S
Sbjct: 1758 TFAGHSLGEYAALASLADVMS 1778


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,447,857
Number of extensions: 134712
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 9
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.6 bits)