RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15921
         (158 letters)



>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
           {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
          Length = 262

 Score = 31.1 bits (70), Expect = 0.041
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 50  LSVLTFRLNYAWSGFRPFAYHL---TNIGLHCLCTALVHLLALSVLPTHRAAWVAS---A 103
           +  +  +L ++      F +     TN+G     +  + L  L+          +     
Sbjct: 155 VDNIESKLPFSHD--DRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQ 212

Query: 104 LFGVHPVHTEAVAGLV 119
           + G    HTE+  G+ 
Sbjct: 213 VRGTRGEHTESEGGVY 228


>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
           helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 24.0 bits (52), Expect = 4.5
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 128 IFYLVAILMFVHLPPRSILRLKEIYGV 154
           +     ++    + P ++  +K I GV
Sbjct: 37  LATNKILVDMAKMRPTTVENVKRIDGV 63


>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha
          subunit {Oxytricha nova [TaxId: 200597]}
          Length = 167

 Score = 24.9 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 20 LPSTPLEALFHN 31
          LPST L+ LFH+
Sbjct: 17 LPSTSLQDLFHH 28


>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase
          1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 23.6 bits (51), Expect = 7.4
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 23 TPLEALFHNDFWGTPIKSPSSHGSYRPLSVLTFRLN 58
          T  EA    D    P ++       R  ++  +  N
Sbjct: 18 TSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDN 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 592,524
Number of extensions: 24276
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 8
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)