BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15923
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 4 QNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGI 63
+ G L+I+ NYTGD LNFG+A EK + G+ +EM+ VG+D +L + RG+ G
Sbjct: 101 EAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKH-----PRGIAGT 155
Query: 64 VFVIK 68
+ V K
Sbjct: 156 ILVHK 160
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 4 QNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGI 63
+ G L+I+ NYTGD LNFG+A EK + G+ +EM+ VG+D +L + RG+ G
Sbjct: 101 EAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKH-----PRGIAGT 155
Query: 64 VFVIK 68
+ V K
Sbjct: 156 ILVHK 160
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ + AGRRG+
Sbjct: 103 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDS--LYTAGRRGV 160
Query: 61 CGIVFVIK 68
V + K
Sbjct: 161 ANTVLIEK 168
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ + AGRRG+
Sbjct: 103 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDS--LYTAGRRGV 160
Query: 61 CGIVFVIK 68
V + K
Sbjct: 161 ANTVLIEK 168
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ + AGRRG+
Sbjct: 94 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDS--LYTAGRRGV 151
Query: 61 CGIVFVIK 68
V + K
Sbjct: 152 ANTVLIEK 159
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ + AGRRG+
Sbjct: 94 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDS--LYTAGRRGV 151
Query: 61 CGIVFVIK 68
V + K
Sbjct: 152 ANTVLIEK 159
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ + AGRRG+
Sbjct: 94 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDS--LYTAGRRGV 151
Query: 61 CGIVFVIK 68
V + K
Sbjct: 152 ANTVLIEK 159
>pdb|3CT4|A Chain A, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
pdb|3CT4|B Chain B, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
pdb|3CT4|C Chain C, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
Length = 332
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
D GVL+II NY GDV+NF +A E + + +E + V +D A+ N+ + GRRG+
Sbjct: 96 DEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKVEQIIVDDDIAVENS--LYTQGRRGVA 153
Query: 62 GIVFVIK 68
G V V K
Sbjct: 154 GTVLVHK 160
>pdb|3T68|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea
pdb|3T6M|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea In The Zn Bound Form
Length = 268
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 2 DNQNGV-LMIIANYTGDVLNFGI-ACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59
D+Q + +I ++ G +N + E + A+ I+M VGE + L G + GRRG
Sbjct: 124 DHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRG 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,834,573
Number of Sequences: 62578
Number of extensions: 54079
Number of successful extensions: 134
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)