BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15923
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04059|DHBK_SOLLC Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum
GN=DHBK PE=2 SV=1
Length = 594
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A E+ K++G+ +EMV VG+DCAL I AGRRG+ G +
Sbjct: 107 GCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEMVIVGDDCALPPPRGI--AGRRGLAGTLL 164
Query: 66 VIK 68
V K
Sbjct: 165 VHK 167
>sp|Q58DK4|DHAK_BOVIN Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) OS=Bos taurus GN=DAK PE=2 SV=1
Length = 578
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A E+ +A+G +EMV VG+D A + AGRRG+CG V
Sbjct: 103 GTLLIVKNYTGDRLNFGLAREQARAEGIPVEMVVVGDDSAFTVLKK---AGRRGLCGTVL 159
Query: 66 VIK 68
+ K
Sbjct: 160 IHK 162
>sp|Q3LXA3|DHAK_HUMAN Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) OS=Homo sapiens GN=DAK PE=1 SV=2
Length = 575
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A E+ +A+G +EMV +G+D A + AGRRG+CG V
Sbjct: 103 GTLLIVKNYTGDRLNFGLAREQARAEGIPVEMVVIGDDSAFTVLKK---AGRRGLCGTVL 159
Query: 66 VIK 68
+ K
Sbjct: 160 IHK 162
>sp|F1RKQ4|DHAK_PIG Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) OS=Sus scrofa GN=DAK PE=1 SV=2
Length = 579
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A E+ +A+G +EMV VG+D A + AGRRG+CG V
Sbjct: 103 GTLLIVKNYTGDRLNFGLAREQARAEGIPVEMVVVGDDSAFTVLKK---AGRRGLCGTVL 159
Query: 66 VIK 68
+ K
Sbjct: 160 IHK 162
>sp|Q8VC30|DHAK_MOUSE Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) OS=Mus musculus GN=Dak PE=2 SV=1
Length = 578
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A E+ KA+G ++EMV V +D A + AGRRG+CG V
Sbjct: 103 GTLLIVKNYTGDRLNFGLAMEQAKAEGISVEMVIVEDDSAFTVLKK---AGRRGLCGTVL 159
Query: 66 VIK 68
+ K
Sbjct: 160 IHK 162
>sp|Q4KLZ6|DHAK_RAT Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase
(cyclizing) OS=Rattus norvegicus GN=Dak PE=1 SV=1
Length = 578
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A E+ KA+G ++EMV + +D A + AGRRG+CG +
Sbjct: 103 GTLLIVKNYTGDRLNFGLAMEQAKAEGISVEMVVIEDDSAFTVLKK---AGRRGLCGTIL 159
Query: 66 VIK 68
+ K
Sbjct: 160 IHK 162
>sp|P43550|DAK2_YEAST Dihydroxyacetone kinase 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DAK2 PE=1 SV=1
Length = 591
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+++ G L+I+ NYTGD+++FG+A E+ KA G +E+V VG+D + + + SL GRRG+
Sbjct: 98 VESPKGTLIIVKNYTGDIIHFGLAAERAKAAGMKVELVAVGDDVS-VGKKKGSLVGRRGL 156
Query: 61 CGIVFVIK 68
V V K
Sbjct: 157 GATVLVHK 164
>sp|O74215|DAK2_SCHPO Dihydroxyacetone kinase 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=dak2 PE=3 SV=2
Length = 591
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD+++FG+A E+ KA G +E+V VG+D + + R +L GRRG+ V
Sbjct: 103 GTLIIVKNYTGDIIHFGLAAERAKAAGMNVELVAVGDDVS-VGKKRGALVGRRGLGATVL 161
Query: 66 VIK 68
V K
Sbjct: 162 VHK 164
>sp|O74192|DAK_PICPA Dihydroxyacetone kinase OS=Komagataella pastoris GN=DAK PE=3 SV=1
Length = 608
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 3 NQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCG 62
++ G L+I+ NYTGD+L+FG+A EK KA+G E++ V +D + + + L GRRG+ G
Sbjct: 96 SKKGTLIIVKNYTGDILHFGLAAEKAKAEGLNAELLIVQDDVS-VGKAKNGLVGRRGLAG 154
Query: 63 IVFVIK 68
V K
Sbjct: 155 TSLVHK 160
>sp|O60017|DAK_PICAN Dihydroxyacetone kinase OS=Pichia angusta GN=DAK PE=3 SV=1
Length = 609
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 3 NQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCG 62
+ G L+++ NYTGD+L+FG+A E+ KA+G +E++ V +D ++ T + + GRRG+ G
Sbjct: 95 SDKGTLIVVKNYTGDILHFGLAAERAKAEGVPVELLIVQDDVSVGRT-KNGMVGRRGLAG 153
Query: 63 IVFVIK 68
V K
Sbjct: 154 TSLVHK 159
>sp|P54838|DAK1_YEAST Dihydroxyacetone kinase 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DAK1 PE=1 SV=1
Length = 584
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
+N +GVL+I+ NYTGDVL+FG++ E+ +A G + +G+D A + + + GRR +
Sbjct: 93 ENASGVLLIVKNYTGDVLHFGLSAERARALGINCRVAVIGDDVA-VGREKGGMVGRRALA 151
Query: 62 GIVFVIK 68
G V V K
Sbjct: 152 GTVLVHK 158
>sp|O13902|DAK1_SCHPO Dihydroxyacetone kinase 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=dak1 PE=3 SV=1
Length = 580
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL--LNTGRISLAGRR 58
++++ G L+I NYTGD+L+FG+A EK + G E++ V +D ++ +G++ GRR
Sbjct: 93 VESEAGTLVICKNYTGDILHFGMALEKQRTAGKKAELIAVADDVSVGRKKSGKV---GRR 149
Query: 59 GMCGIVFVIK 68
G+ G V V K
Sbjct: 150 GLSGTVLVHK 159
>sp|P45510|DHAK_CITFR Dihydroxyacetone kinase OS=Citrobacter freundii GN=dhaK PE=1 SV=3
Length = 552
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 4 QNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGI 63
+ G L+I+ NYTGD LNFG+A EK + G+ +EM+ VG+D +L + RG+ G
Sbjct: 101 EAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKH-----PRGIAGT 155
Query: 64 VFVIK 68
+ V K
Sbjct: 156 ILVHK 160
>sp|P76015|DHAK_ECOLI PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding
subunit DhaK OS=Escherichia coli (strain K12) GN=dhaK
PE=1 SV=2
Length = 356
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ + AGRRG+
Sbjct: 93 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDS--LYTAGRRGV 150
Query: 61 CGIVFVIK 68
V + K
Sbjct: 151 ANTVLIEK 158
>sp|Q9CIV8|DHAK_LACLA PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding
subunit DhaK OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=dhaK PE=1 SV=2
Length = 332
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
D GVL+II NY GDV+NF +A E + + +E + V +D A+ N+ + GRRG+
Sbjct: 96 DEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKVEQIIVDDDIAVENS--LYTQGRRGVA 153
Query: 62 GIVFVIK 68
G V V K
Sbjct: 154 GTVLVHK 160
>sp|Q5WY21|DAPE_LEGPL Succinyl-diaminopimelate desuccinylase OS=Legionella pneumophila
(strain Lens) GN=dapE PE=3 SV=1
Length = 377
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 8 LMIIANYTGDVLNFGI--ACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59
+I + GD N G A +K++ QG I+ VGE + L TG + GRRG
Sbjct: 127 FLITSGEEGDEFNLGTPYAMQKLEQQGIVIDYCIVGEPSSSLKTGDVIKIGRRG 180
>sp|Q21WT4|DAPE_RHOFD Succinyl-diaminopimelate desuccinylase OS=Rhodoferax ferrireducens
(strain DSM 15236 / ATCC BAA-621 / T118) GN=dapE PE=3
SV=1
Length = 391
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 25 CEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68
CE ++A+G I+ VGE +L TG + GRRG +K
Sbjct: 157 CEALQARGERIDYCIVGEPTSLERTGDMIKNGRRGTLSARLTVK 200
>sp|A1WEL1|DAPE_VEREI Succinyl-diaminopimelate desuccinylase OS=Verminephrobacter
eiseniae (strain EF01-2) GN=dapE PE=3 SV=1
Length = 401
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 23 IACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59
+ E++KA+G +I+ VGE A+ TG + GRRG
Sbjct: 159 VVVEQLKARGDSIDYCIVGEPTAVEKTGDMVKNGRRG 195
>sp|A5IG28|DAPE_LEGPC Succinyl-diaminopimelate desuccinylase OS=Legionella pneumophila
(strain Corby) GN=dapE PE=3 SV=1
Length = 377
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 8 LMIIANYTGDVLNFGI--ACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59
+I + GD N G +K++ QG I+ VGE + L G I GRRG
Sbjct: 127 FLITSGEEGDEFNLGTPYVMQKLEQQGIVIDYCIVGEPSSSLKAGDIIKIGRRG 180
>sp|Q5ZX46|DAPE_LEGPH Succinyl-diaminopimelate desuccinylase OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=dapE PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 8 LMIIANYTGDVLNFGI--ACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59
+I + GD N G +K++ QG I+ VGE + L G + GRRG
Sbjct: 127 FLITSGEEGDEFNLGTPYVMQKLEQQGIVIDYCIVGEPSSSLKAGDVIKIGRRG 180
>sp|Q5X6L7|DAPE_LEGPA Succinyl-diaminopimelate desuccinylase OS=Legionella pneumophila
(strain Paris) GN=dapE PE=3 SV=1
Length = 377
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 8 LMIIANYTGDVLNFGI--ACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59
+I + GD N G +K++ QG I+ VGE + L G + GRRG
Sbjct: 127 FLITSGEEGDEFNLGTPYVMQKLEQQGIVIDYCIVGEPSSSLKAGDVIKIGRRG 180
>sp|Q55EE0|DHAK_DICDI Probable dihydroxyacetone kinase OS=Dictyostelium discoideum
GN=dhak PE=3 SV=1
Length = 648
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQ--GHAIEMVTVGEDCALL----------NTGRI- 52
G ++I+ NY GD +F IA E K+Q +E++TV +D + + N I
Sbjct: 100 GCILIVKNYMGDNGSFSIAREMCKSQLPDIRVEIITVDDDISSILMKLNEFSNDNNDNIQ 159
Query: 53 -------SLAGRRGMCGIVFVIK 68
S+ RRG+ G V V K
Sbjct: 160 DIRDKYKSITNRRGIAGTVLVHK 182
>sp|Q2L2J6|DAPE_BORA1 Succinyl-diaminopimelate desuccinylase OS=Bordetella avium (strain
197N) GN=dapE PE=3 SV=1
Length = 377
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 23 IACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68
I C+ ++A+G ++ VGE + G + GRRG G +K
Sbjct: 143 IVCDALQARGEKLDYCIVGEPTSTHELGDVCKNGRRGSLGGTLTVK 188
>sp|Q12C18|DAPE_POLSJ Succinyl-diaminopimelate desuccinylase OS=Polaromonas sp. (strain
JS666 / ATCC BAA-500) GN=dapE PE=3 SV=1
Length = 425
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 23 IACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68
+ C+++KA+G ++ VGE ++ + G + GRRG IK
Sbjct: 173 VVCKQLKARGEVLDYCIVGEPTSVSHLGDMIKNGRRGTMSGKLTIK 218
>sp|Q759T6|SPT5_ASHGO Transcription elongation factor SPT5 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SPT5 PE=3 SV=2
Length = 958
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 38 VTVGEDCALLNTGRISLAGRRGMCGIV 64
V+VG D AL T RI AG +G GIV
Sbjct: 694 VSVGRDVALNKTVRIRSAGYKGQLGIV 720
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,554,930
Number of Sequences: 539616
Number of extensions: 712706
Number of successful extensions: 2361
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2334
Number of HSP's gapped (non-prelim): 26
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)