Query psy15923
Match_columns 68
No_of_seqs 102 out of 708
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ct4_A PTS-dependent dihydroxy 100.0 4.1E-32 1.4E-36 201.0 2.8 66 1-68 95-160 (332)
2 2iu4_A DHA-DHAQ, dihydroxyacet 100.0 3.3E-32 1.1E-36 201.8 1.0 66 1-68 91-156 (336)
3 1oi2_A Hypothetical protein YC 100.0 2.5E-31 8.4E-36 198.9 2.6 66 1-68 103-168 (366)
4 1un8_A Dihydroxyacetone kinase 100.0 7.9E-30 2.7E-34 197.8 2.4 63 1-68 98-160 (552)
5 4got_A Methionine-binding lipo 56.2 6.9 0.00024 27.4 2.4 28 16-45 18-45 (249)
6 3frk_A QDTB; aminotransferase, 50.5 12 0.00043 25.0 2.9 36 7-46 126-161 (373)
7 3dhx_A Methionine import ATP-b 48.8 23 0.00079 21.0 3.7 32 5-38 64-95 (106)
8 2x5n_A SPRPN10, 26S proteasome 48.2 24 0.00083 22.8 4.0 38 7-44 110-147 (192)
9 3dr4_A Putative perosamine syn 43.9 14 0.00048 24.9 2.3 36 7-46 146-181 (391)
10 1pb7_A N-methyl-D-aspartate re 43.8 36 0.0012 22.3 4.3 36 5-42 40-89 (292)
11 1bs0_A Protein (8-amino-7-oxon 41.7 25 0.00084 23.5 3.3 36 7-46 170-208 (384)
12 3mqp_B Phorbol-12-myristate-13 41.5 6.9 0.00023 18.8 0.3 7 16-22 15-21 (25)
13 3ouv_A Serine/threonine protei 40.7 42 0.0015 18.0 3.8 29 8-38 7-35 (71)
14 3uwc_A Nucleotide-sugar aminot 40.1 18 0.0006 24.0 2.3 35 8-46 128-162 (374)
15 2qip_A Protein of unknown func 38.8 37 0.0013 21.2 3.6 30 7-40 111-141 (165)
16 2po3_A 4-dehydrase; external a 37.0 31 0.001 23.7 3.2 35 8-46 141-175 (424)
17 3ir1_A Outer membrane lipoprot 34.4 30 0.001 24.2 2.8 29 16-45 13-41 (245)
18 2jm6_A NOXA; apoptosis, BCL-2, 33.9 13 0.00045 18.1 0.7 8 16-23 15-22 (27)
19 2qrr_A Methionine import ATP-b 33.5 70 0.0024 18.4 4.1 31 6-38 67-97 (101)
20 4ib2_A Putative lipoprotein; p 33.2 40 0.0014 23.5 3.3 28 16-45 23-50 (252)
21 2oga_A Transaminase; PLP-depen 32.5 22 0.00077 24.2 1.9 35 8-46 154-188 (399)
22 2c81_A Glutamine-2-deoxy-scyll 32.0 26 0.0009 23.9 2.2 36 7-46 132-167 (418)
23 1o69_A Aminotransferase; struc 31.4 43 0.0015 22.7 3.2 35 8-46 125-159 (394)
24 2fnu_A Aminotransferase; prote 30.3 43 0.0015 22.0 3.0 35 8-46 124-158 (375)
25 3kki_A CAI-1 autoinducer synth 30.2 25 0.00085 23.9 1.8 31 13-47 197-227 (409)
26 1jey_A KU70; double-strand DNA 28.4 69 0.0023 24.4 4.2 38 6-43 164-208 (609)
27 1snn_A DHBP synthase, 3,4-dihy 28.3 55 0.0019 22.8 3.3 35 3-37 178-212 (227)
28 2jyn_A UPF0368 protein YPL225W 28.2 30 0.001 22.8 1.9 16 18-34 123-139 (146)
29 3op7_A Aminotransferase class 28.1 45 0.0015 22.1 2.8 30 13-46 165-197 (375)
30 3ju3_A Probable 2-oxoacid ferr 27.8 44 0.0015 20.0 2.5 17 24-40 31-47 (118)
31 4ef1_A Pheromone COB1/lipoprot 27.7 45 0.0015 23.1 2.8 28 16-45 16-43 (246)
32 2f9z_C Protein (chemotaxis met 27.5 40 0.0014 22.0 2.4 22 15-37 102-123 (159)
33 3n5m_A Adenosylmethionine-8-am 26.8 31 0.0011 23.9 1.9 29 13-46 227-259 (452)
34 1fc4_A 2-amino-3-ketobutyrate 26.4 65 0.0022 21.5 3.4 30 13-46 188-217 (401)
35 2qsw_A Methionine import ATP-b 26.4 73 0.0025 18.3 3.3 32 5-38 66-97 (100)
36 3b8x_A WBDK, pyridoxamine 5-ph 26.4 49 0.0017 22.2 2.8 36 7-46 130-165 (390)
37 2fl7_A Regulatory protein SIR3 26.0 38 0.0013 23.7 2.2 35 23-59 4-38 (232)
38 3ced_A Methionine import ATP-b 26.0 1E+02 0.0035 17.8 4.1 32 5-38 63-95 (98)
39 2kud_A PKNB, serine/threonine- 25.9 77 0.0026 19.0 3.4 31 6-38 6-36 (140)
40 2dr1_A PH1308 protein, 386AA l 25.7 64 0.0022 21.2 3.2 36 7-46 149-186 (386)
41 2z61_A Probable aspartate amin 25.5 44 0.0015 22.2 2.4 30 13-47 165-194 (370)
42 2x3l_A ORN/Lys/Arg decarboxyla 25.3 46 0.0016 23.5 2.6 38 5-46 148-185 (446)
43 3nyt_A Aminotransferase WBPE; 25.0 27 0.00093 23.4 1.3 35 7-45 125-159 (367)
44 3f9t_A TDC, L-tyrosine decarbo 25.0 39 0.0013 22.1 2.0 32 11-46 180-211 (397)
45 3of5_A Dethiobiotin synthetase 24.0 1.5E+02 0.0053 19.2 5.2 38 5-42 141-178 (228)
46 3ruy_A Ornithine aminotransfer 23.9 42 0.0015 22.4 2.1 32 11-46 191-226 (392)
47 2cb1_A O-acetyl homoserine sul 23.8 60 0.002 22.3 2.9 32 12-47 150-181 (412)
48 3gxa_A Outer membrane lipoprot 23.8 58 0.002 23.1 2.8 29 16-45 35-63 (275)
49 3tqw_A Methionine-binding prot 23.6 77 0.0026 21.9 3.4 28 16-45 15-43 (240)
50 3tsa_A SPNG, NDP-rhamnosyltran 23.2 1E+02 0.0035 20.5 3.9 34 7-40 4-37 (391)
51 3tqx_A 2-amino-3-ketobutyrate 23.2 49 0.0017 21.9 2.2 30 13-46 186-215 (399)
52 2rfv_A Methionine gamma-lyase; 23.1 65 0.0022 21.9 2.9 33 11-47 158-190 (398)
53 1b9h_A AHBA synthase, protein 23.1 26 0.00089 23.5 0.9 35 8-46 129-163 (388)
54 4fzr_A SSFS6; structural genom 23.0 1.3E+02 0.0046 20.1 4.5 34 7-40 18-51 (398)
55 3k2d_A ABC-type metal ION tran 22.9 81 0.0028 21.8 3.4 28 16-45 18-46 (237)
56 2fb6_A Conserved hypothetical 22.8 1.3E+02 0.0045 18.0 4.2 39 5-45 8-52 (117)
57 3l6g_A Betaine ABC transporter 22.7 1.3E+02 0.0044 19.9 4.3 34 7-40 4-37 (256)
58 3g3k_A Glutamate receptor, ion 22.6 79 0.0027 19.5 3.1 24 19-42 35-58 (259)
59 3sho_A Transcriptional regulat 22.5 1.4E+02 0.0047 18.1 4.6 37 5-43 87-123 (187)
60 3hsy_A Glutamate receptor 2; l 22.4 39 0.0013 22.8 1.7 28 18-45 17-44 (376)
61 1tks_A 3,4-dihydroxy-2-butanon 22.0 83 0.0029 21.5 3.3 33 4-36 160-193 (204)
62 3n7t_A Macrophage binding prot 22.0 1.1E+02 0.0038 20.5 3.9 40 5-44 10-60 (247)
63 1n3y_A Integrin alpha-X; alpha 21.8 1.4E+02 0.0048 17.9 5.1 40 5-44 111-152 (198)
64 3f0h_A Aminotransferase; RER07 21.5 1.2E+02 0.0041 19.8 3.9 31 12-46 154-184 (376)
65 2xhz_A KDSD, YRBH, arabinose 5 21.4 1.4E+02 0.0047 18.0 4.0 37 5-43 96-132 (183)
66 1m3s_A Hypothetical protein YC 21.3 1.4E+02 0.0049 18.0 4.0 36 5-42 79-114 (186)
67 3lvm_A Cysteine desulfurase; s 21.1 47 0.0016 22.3 1.9 32 12-47 173-204 (423)
68 2b4l_A Glycine betaine-binding 21.1 2E+02 0.0067 19.4 5.3 34 7-40 167-200 (268)
69 2w8t_A SPT, serine palmitoyltr 21.0 55 0.0019 22.5 2.2 31 13-47 205-235 (427)
70 1mdo_A ARNB aminotransferase; 20.8 31 0.001 23.0 0.9 35 8-46 130-164 (393)
71 3p1t_A Putative histidinol-pho 20.7 55 0.0019 21.2 2.1 30 12-46 145-174 (337)
72 2xbl_A Phosphoheptose isomeras 20.4 1.6E+02 0.0053 17.9 4.2 36 5-42 116-151 (198)
73 3oti_A CALG3; calicheamicin, T 20.2 1.5E+02 0.005 19.9 4.2 34 7-40 23-56 (398)
74 1umd_B E1-beta, 2-OXO acid deh 20.2 66 0.0023 22.2 2.5 24 16-39 211-235 (324)
75 1jeo_A MJ1247, hypothetical pr 20.2 1.4E+02 0.0047 18.0 3.8 35 5-39 82-116 (180)
No 1
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DHAK; dihydroxyacetone kinase subunit, tranferase; 2.50A {Lactococcus lactis subsp}
Probab=99.97 E-value=4.1e-32 Score=200.98 Aligned_cols=66 Identities=42% Similarity=0.669 Sum_probs=62.4
Q ss_pred CCCCCeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccccCCCCCCCCCCeeeceEEEEEC
Q psy15923 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68 (68)
Q Consensus 1 ~~~~~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~~~~~~~~~~RRGvAG~vlv~K 68 (68)
+++++|||+||||||||+|||+||+|+|+++||+|++|+|+||||+++ +....+|||+||+|||||
T Consensus 95 v~~g~GvL~ivkNYtGDvlNF~mAaE~a~~eGi~v~~VvV~DDvA~~~--~~~~~gRRGvAGtvlv~K 160 (332)
T 3ct4_A 95 ADEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKVEQIIVDDDIAVEN--SLYTQGRRGVAGTVLVHK 160 (332)
T ss_dssp HCCSSCEEEEEESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSSSS--CTTCSSSCCCTTHHHHHH
T ss_pred hcCCCCEEEEeCCcHHHhhcHHHHHHHHHhcCCcEEEEEeCCcccCCC--cCCCCCCCchhHHHHHHH
Confidence 378999999999999999999999999999999999999999999987 556799999999999998
No 2
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=99.97 E-value=3.3e-32 Score=201.78 Aligned_cols=66 Identities=21% Similarity=0.430 Sum_probs=62.3
Q ss_pred CCCCCeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccccCCCCCCCCCCeeeceEEEEEC
Q psy15923 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68 (68)
Q Consensus 1 ~~~~~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~~~~~~~~~~RRGvAG~vlv~K 68 (68)
+++++|||+||||||||+|||+||+|+|+++||+|++|+|+||||+++ +....+|||+||+|||||
T Consensus 91 v~~g~GvL~ivkNYtGDvlNF~mAaE~a~~eGi~v~~VvV~DDvA~~~--~~~~~gRRGvAGtvlv~K 156 (336)
T 2iu4_A 91 VNSGKGVFVIIKNFEADLKEFNEAIKEARTEGIDVRYIVSHDDISVNA--YNFHKRHRGVAGTILLHK 156 (336)
T ss_dssp HCSSSCEEEEEESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCHHHH--HTCCSCCCCCTTHHHHHH
T ss_pred hcCCCCEEEEeCCcHHHhhcHHHHHHHHHhCCCcEEEEEecCceecCC--CCCCCCCCchhHHHHHHH
Confidence 378999999999999999999999999999999999999999999987 556789999999999988
No 3
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=99.96 E-value=2.5e-31 Score=198.93 Aligned_cols=66 Identities=41% Similarity=0.701 Sum_probs=62.4
Q ss_pred CCCCCeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccccCCCCCCCCCCeeeceEEEEEC
Q psy15923 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68 (68)
Q Consensus 1 ~~~~~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~~~~~~~~~~RRGvAG~vlv~K 68 (68)
+++++|||+||||||||+|||+||+|+|+++||+|++|+|+||||+++ +....+|||+||+|||||
T Consensus 103 v~~g~GvL~ivkNYtGDvlNF~mA~E~a~~eGi~v~~Vvv~DDvAv~~--~~~~~gRRGvAGtvlv~K 168 (366)
T 1oi2_A 103 VDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKD--SLYTAGRRGVANTVLIEK 168 (366)
T ss_dssp HCCSSCEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCBS--CTTCSSBCCCTHHHHHHH
T ss_pred hcCCCCEEEEeCCcHHHhhcHHHHHHHHHhcCCcEEEEEecCceecCC--CCCCCCCCchhHHHHHHH
Confidence 378999999999999999999999999999999999999999999987 566789999999999987
No 4
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Probab=99.95 E-value=7.9e-30 Score=197.78 Aligned_cols=63 Identities=43% Similarity=0.775 Sum_probs=60.0
Q ss_pred CCCCCeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccccCCCCCCCCCCeeeceEEEEEC
Q psy15923 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68 (68)
Q Consensus 1 ~~~~~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~~~~~~~~~~RRGvAG~vlv~K 68 (68)
+++++|||+||||||||+|||+||+|+|+++||+|++|+|+||||+++ + .+|||+||+|||||
T Consensus 98 ~~~g~Gvl~ivkNYtGD~lnF~~A~e~a~~~gi~v~~v~v~DDva~~~--~---~~RRGvaGtv~v~K 160 (552)
T 1un8_A 98 VTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPD--N---KHPRGIAGTILVHK 160 (552)
T ss_dssp HCCTTCEEEEEESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCTT--C---SSCCCCTTHHHHHH
T ss_pred hcCCCCEEEEecccHHHHhhHHHHHHHHHhcCCcEEEEEecCcccCCC--C---CCCCchhHHHHHHH
Confidence 368999999999999999999999999999999999999999999986 3 89999999999998
No 5
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=56.23 E-value=6.9 Score=27.40 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.6
Q ss_pred hhhhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
.|+|++ +.+.++++||+++.+..+|=+.
T Consensus 18 aeil~~--vk~~l~k~Gi~leiv~F~Dy~~ 45 (249)
T 4got_A 18 AEILKE--AEPLLKEKGYTLKVKVLSDYKM 45 (249)
T ss_dssp HHHHHH--HHHHHHTTTCEEEEECCSSTHH
T ss_pred HHHHHH--HHHHHHhcCCeEEEEEeCCccc
Confidence 688766 7889999999999999988654
No 6
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=50.47 E-value=12 Score=25.00 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=27.3
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
-++++.|.+|......--.+.|++.| ..++-|++-.
T Consensus 126 ~~v~~~n~~G~~~~l~~i~~l~~~~~----~~li~D~a~~ 161 (373)
T 3frk_A 126 KAIIAVHLYGQPADMDEIKRIAKKYN----LKLIEDAAQA 161 (373)
T ss_dssp EEEEEECCTTCCCCHHHHHHHHHHHT----CEEEEECTTC
T ss_pred eEEEEECCCcCcccHHHHHHHHHHcC----CEEEEECCcc
Confidence 34558999999999988888898887 3555577643
No 7
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=48.78 E-value=23 Score=20.97 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=25.5
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEE
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMV 38 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v 38 (68)
-|.|++ .-+||--+..-|.+.+++.|+.|+.+
T Consensus 64 ~G~L~v--~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 64 FGIMLT--EMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp EEEEEE--EEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEE--EEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455555 46788888999999999999998754
No 8
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=48.24 E-value=24 Score=22.79 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=25.5
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccc
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDC 44 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDv 44 (68)
+|++..-++.|.-...-++++++++||++-+|-++++.
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~ 147 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ 147 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC-
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 44554433333445556788899999999999888764
No 9
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=43.92 E-value=14 Score=24.93 Aligned_cols=36 Identities=6% Similarity=0.199 Sum_probs=27.3
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
-++++.|.+|......--++.|++.| ..++-|++-.
T Consensus 146 ~~v~~~n~tG~~~~~~~i~~l~~~~~----~~li~D~a~~ 181 (391)
T 3dr4_A 146 KAIMPVHLYGQICDMDPILEVARRHN----LLVIEDAAEA 181 (391)
T ss_dssp EEECCBCGGGCCCCHHHHHHHHHHTT----CEEEEECTTC
T ss_pred eEEEEECCCCChhhHHHHHHHHHHcC----CEEEEECccc
Confidence 34557899999999988889999887 3455577643
No 10
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=43.81 E-value=36 Score=22.30 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=26.5
Q ss_pred CeEEEEEcc--------------chhhhhcHHHHHHHHHhcCCcEEEEEecc
Q psy15923 5 NGVLMIIAN--------------YTGDVLNFGIACEKVKAQGHAIEMVTVGE 42 (68)
Q Consensus 5 ~GVL~iv~N--------------YtGDvlnF~~A~e~a~~~Gi~v~~v~v~D 42 (68)
+|+|.+..| ++| +.-+++.+.|+..|++++.+.+.|
T Consensus 40 ~~~l~vg~~~~~~P~~~~~~~g~~~G--~~vDll~~ia~~lg~~~~~~~~~d 89 (292)
T 1pb7_A 40 KKVICTGPNDTSPGSPRHTVPQCCYG--FCIDLLIKLARTMNFTYEVHLVAD 89 (292)
T ss_dssp CCEEEEEEC--------CEEEEEEES--HHHHHHHHHHHHHTCCEEEEECTT
T ss_pred cceeecccCCCCCCccccccccCcce--eHHHHHHHHHHHcCceEEEEEecC
Confidence 467777554 455 455678888888899999998754
No 11
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=41.69 E-value=25 Score=23.48 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=27.0
Q ss_pred EEEEEccc---hhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 7 VLMIIANY---TGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 7 VL~iv~NY---tGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
.++++.|. ||.++...--.+.|++.| ..++-|++-.
T Consensus 170 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~----~~li~De~~~ 208 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAPLAEIQQVTQQHN----GWLMVDDAHG 208 (384)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHTT----CEEEEECTTT
T ss_pred eEEEEeCCCCCCCCccCHHHHHHHHHHcC----cEEEEECCcc
Confidence 45555555 999999887888888887 4566688854
No 12
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=41.50 E-value=6.9 Score=18.83 Aligned_cols=7 Identities=71% Similarity=1.113 Sum_probs=6.2
Q ss_pred hhhhcHH
Q psy15923 16 GDVLNFG 22 (68)
Q Consensus 16 GDvlnF~ 22 (68)
||.+||.
T Consensus 15 gdkln~r 21 (25)
T 3mqp_B 15 GDKLNFR 21 (26)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 8999995
No 13
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=40.74 E-value=42 Score=17.97 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEE
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMV 38 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v 38 (68)
.+.+.|+.| |+..-|.+.+++.|+.+..+
T Consensus 7 ~v~VPdv~G--~~~~~A~~~L~~~Gl~~~~~ 35 (71)
T 3ouv_A 7 TKDIPDVAG--QTVDVAQKNMNVYGFTKFSQ 35 (71)
T ss_dssp EEECCCCTT--CBHHHHHHHHHHTTCCCEEE
T ss_pred ceECCCcCC--CCHHHHHHHHHHCCCeEEEE
Confidence 355789988 78999999999999987643
No 14
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=40.11 E-value=18 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=26.8
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++.|.+|.+....--++.|++.| ..++-|++-.
T Consensus 128 ~v~~~n~~G~~~~~~~i~~~~~~~~----~~li~D~~~~ 162 (374)
T 3uwc_A 128 AIMPVHYTGNIADMPALAKIAKKHN----LHIVEDACQT 162 (374)
T ss_dssp EECCBCGGGCCCCHHHHHHHHHHTT----CEEEEECTTC
T ss_pred EEEEeCCcCCcCCHHHHHHHHHHcC----CEEEEeCCCc
Confidence 4448899999999988889999887 4555677644
No 15
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.81 E-value=37 Score=21.22 Aligned_cols=30 Identities=17% Similarity=0.529 Sum_probs=23.1
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhc-CCcEEEEEe
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQ-GHAIEMVTV 40 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~-Gi~v~~v~v 40 (68)
+++|+ +||- .|--++++++++ |.+|..+-.
T Consensus 111 ~~vLv---SgD~-DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 111 RVILV---SGDG-DFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp EEEEE---CCCG-GGHHHHHHHHHHHCCEEEEEEC
T ss_pred EEEEE---ECCh-hHHHHHHHHHHHcCcEEEEEeC
Confidence 45554 4788 899999999997 998866543
No 16
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=36.95 E-value=31 Score=23.68 Aligned_cols=35 Identities=6% Similarity=-0.099 Sum_probs=26.0
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++.|.+|......--++.|++.|+ .++-|++-.
T Consensus 141 ~v~~~~~tG~~~~l~~i~~la~~~~~----~li~Dea~~ 175 (424)
T 2po3_A 141 AVVGVHLWGRPCAADQLRKVADEHGL----RLYFDAAHA 175 (424)
T ss_dssp EEEEECGGGCCCCHHHHHHHHHHTTC----EEEEECTTC
T ss_pred EEEEECCCCCcCCHHHHHHHHHHcCC----EEEEECccc
Confidence 44457899998888777888988873 556677765
No 17
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=34.42 E-value=30 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=22.1
Q ss_pred hhhhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
.+++.+ .+.+.++++|++++.+..+|=+.
T Consensus 13 ~~il~~-~~k~~l~k~Gi~leiv~F~Dy~~ 41 (245)
T 3ir1_A 13 GDMVKE-QIQPELEKKGYTVKLVEFTDYVR 41 (245)
T ss_dssp HHHHHH-THHHHHHTTTCEEEEEEESSSSH
T ss_pred HHHHHH-HHHHHHHHcCceEEEEEeCCcHh
Confidence 466654 35677888999999999998654
No 18
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=33.93 E-value=13 Score=18.09 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=6.7
Q ss_pred hhhhcHHH
Q psy15923 16 GDVLNFGI 23 (68)
Q Consensus 16 GDvlnF~~ 23 (68)
||.+||..
T Consensus 15 gdkln~rq 22 (27)
T 2jm6_A 15 GDKVNLRQ 22 (27)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999953
No 19
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=33.52 E-value=70 Score=18.40 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=24.4
Q ss_pred eEEEEEccchhhhhcHHHHHHHHHhcCCcEEEE
Q psy15923 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMV 38 (68)
Q Consensus 6 GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v 38 (68)
|.|++- -.||.-+..-|.+.+++.|+.++.+
T Consensus 67 G~L~v~--l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 67 GMMVAE--LFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEE--EESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEE--EeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 556553 3688778889999999999998865
No 20
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=33.16 E-value=40 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=22.3
Q ss_pred hhhhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
.+++.+ +.+.++++|++++.+..+|=+.
T Consensus 23 ~~il~~--v~~~~~k~Gi~veiv~F~Dy~~ 50 (252)
T 4ib2_A 23 AEILEQ--AKSILKKEGYQLEVTVFDDYVQ 50 (252)
T ss_dssp HHHHHH--HHHHHHHTTCEEEEEECSSSSH
T ss_pred HHHHHH--HHHHHHhcCCeEEEEEecChhh
Confidence 466655 7888899999999999888554
No 21
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=32.46 E-value=22 Score=24.16 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=26.6
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++.|.+|.++...--.+.|++.| ..++-|++..
T Consensus 154 ~v~~~n~tG~~~~l~~i~~l~~~~~----~~li~Dea~~ 188 (399)
T 2oga_A 154 ALLPVHLYGHPADMDALRELADRHG----LHIVEDAAQA 188 (399)
T ss_dssp EECCBCGGGCCCCHHHHHHHHHHHT----CEECEECTTC
T ss_pred EEEEeCCcCCccCHHHHHHHHHHcC----CEEEEECccc
Confidence 4456899999999888888898887 3556677654
No 22
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=32.03 E-value=26 Score=23.91 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=26.6
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
-++++.|.+|......--.+.|++.|+ .++-|++-.
T Consensus 132 ~~v~~~~~~G~~~~~~~i~~~~~~~~~----~li~D~a~~ 167 (418)
T 2c81_A 132 KAIIPVHLFGSMANMDEINEIAQEHNL----FVIEDCAQS 167 (418)
T ss_dssp EEECCBCCTTCCCCHHHHHHHHHHTTC----EEEEECTTC
T ss_pred eEEEEeCCcCCcccHHHHHHHHHHCCC----EEEEECccc
Confidence 355668999998888777888888873 455677654
No 23
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=31.43 E-value=43 Score=22.74 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=26.6
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++.|.+|......--.+.|++.| ..++-|++-.
T Consensus 125 ~v~~~~~~G~~~~l~~i~~l~~~~~----~~li~Dea~~ 159 (394)
T 1o69_A 125 ALILTHLYGNAAKMDEIVEICKEND----IVLIEDAAEA 159 (394)
T ss_dssp EEEEECGGGCCCCHHHHHHHHHHTT----CEEEEECTTC
T ss_pred EEEEECCCCChhhHHHHHHHHHHcC----CEEEEECcCc
Confidence 4555689999888888888898887 4556677765
No 24
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=30.31 E-value=43 Score=21.97 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=25.6
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++.|.+|-+++..--.+.|++.|+ .++-|++..
T Consensus 124 ~v~~~~~tG~~~~l~~i~~l~~~~~~----~li~D~a~~ 158 (375)
T 2fnu_A 124 AIVSVDYAGKSVEVESVQKLCKKHSL----SFLSDSSHA 158 (375)
T ss_dssp EEEEECGGGCCCCHHHHHHHHHHHTC----EEEEECTTC
T ss_pred EEEEeCCcCCccCHHHHHHHHHHcCC----EEEEECccc
Confidence 44567779999998877888888774 455577654
No 25
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=30.24 E-value=25 Score=23.89 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=25.3
Q ss_pred cchhhhhcHHHHHHHHHhcCCcEEEEEeccccccc
Q psy15923 13 NYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALL 47 (68)
Q Consensus 13 NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~ 47 (68)
|.||.++.+.--++.|++.| .+++-|++-..
T Consensus 197 nptG~~~~l~~l~~la~~~~----~~li~De~~~~ 227 (409)
T 3kki_A 197 STLGTIAPLAELVNISKEFG----CALLVDESHSL 227 (409)
T ss_dssp TTTCCBCCHHHHHHHHHHHT----CEEEEECTTTT
T ss_pred CCCCCcCCHHHHHHHHHHcC----CEEEEECCccc
Confidence 55899999998899999988 56777888643
No 26
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=28.43 E-value=69 Score=24.35 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=27.2
Q ss_pred eEEEEEcc----chhhh---hcHHHHHHHHHhcCCcEEEEEeccc
Q psy15923 6 GVLMIIAN----YTGDV---LNFGIACEKVKAQGHAIEMVTVGED 43 (68)
Q Consensus 6 GVL~iv~N----YtGDv---lnF~~A~e~a~~~Gi~v~~v~v~DD 43 (68)
-+|+|++| +.+|- -...-+++.+++.||++..+-++.+
T Consensus 164 k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 164 KRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp EEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 37777777 43331 2456688888999999999988655
No 27
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=28.34 E-value=55 Score=22.78 Aligned_cols=35 Identities=3% Similarity=-0.090 Sum_probs=29.9
Q ss_pred CCCeEEEEEccchhhhhcHHHHHHHHHhcCCcEEE
Q psy15923 3 NQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEM 37 (68)
Q Consensus 3 ~~~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~ 37 (68)
.+.|||+=+.|-.|..+.-.-+.+.|++.|+++-+
T Consensus 178 ~Pa~VicEi~~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 36789999999999999999999999999987543
No 28
>2jyn_A UPF0368 protein YPL225W; novel fold, YST0336, YT51, ontario centre for structural proteomics, OCSP, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=28.19 E-value=30 Score=22.79 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.4
Q ss_pred hhcHHHHHHHHH-hcCCc
Q psy15923 18 VLNFGIACEKVK-AQGHA 34 (68)
Q Consensus 18 vlnF~~A~e~a~-~~Gi~ 34 (68)
++-| +|.|.|| .+|.+
T Consensus 123 RiQF-~AIEIARNreGlN 139 (146)
T 2jyn_A 123 RLQF-YAFEIARNKHGLN 139 (146)
T ss_dssp HHHH-HHHHHHHHHTTTT
T ss_pred hHHH-HHHHHHHhhccch
Confidence 6789 9999999 68864
No 29
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=28.13 E-value=45 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=22.9
Q ss_pred cchhhhhc---HHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 13 NYTGDVLN---FGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 13 NYtGDvln---F~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
|-+|.++. ..--++.|++.| ..++-|++-.
T Consensus 165 nptG~~~~~~~l~~i~~la~~~~----~~li~De~~~ 197 (375)
T 3op7_A 165 NPTGAVMDRTYLEELVEIASEVG----AYILSDEVYR 197 (375)
T ss_dssp TTTCCCCCHHHHHHHHHHHHTTT----CEEEEECCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC----CEEEEEcccc
Confidence 88999998 766677888877 4666788744
No 30
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=27.76 E-value=44 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.392 Sum_probs=13.7
Q ss_pred HHHHHHhcCCcEEEEEe
Q psy15923 24 ACEKVKAQGHAIEMVTV 40 (68)
Q Consensus 24 A~e~a~~~Gi~v~~v~v 40 (68)
|+++++++|+++..+-+
T Consensus 31 A~~~L~~~Gi~v~vi~~ 47 (118)
T 3ju3_A 31 VIEDLKEEGISANLLYL 47 (118)
T ss_dssp HHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 67788889999887754
No 31
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=27.70 E-value=45 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=22.0
Q ss_pred hhhhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
.+.+.+ +.+.++++|++++.+..+|=+.
T Consensus 16 ~~i~~~--v~~~l~k~Gi~veiv~F~dy~~ 43 (246)
T 4ef1_A 16 AEILEH--VKPLLEKEGVKLEVTTYTDYVL 43 (246)
T ss_dssp HHHHHH--HHHHHHHTTEEEEEEECSSSSH
T ss_pred HHHHHH--HHHHHHhcCCEEEEEEeCCchh
Confidence 456665 6788889999999999888543
No 32
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=27.49 E-value=40 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.3
Q ss_pred hhhhhcHHHHHHHHHhcCCcEEE
Q psy15923 15 TGDVLNFGIACEKVKAQGHAIEM 37 (68)
Q Consensus 15 tGDvlnF~~A~e~a~~~Gi~v~~ 37 (68)
-|++ |-+.|.+.++++||++..
T Consensus 102 IG~r-Nv~~a~~~L~~~gI~i~a 123 (159)
T 2f9z_C 102 IGAR-NVEAVKKHLKDFGIKLLA 123 (159)
T ss_dssp HHHH-HHHHHHHHHHHTTCCEEE
T ss_pred hHHH-HHHHHHHHHHHCCCcEEE
Confidence 4666 899999999999998654
No 33
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=26.75 E-value=31 Score=23.93 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=23.7
Q ss_pred cchhhhhc----HHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 13 NYTGDVLN----FGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 13 NYtGDvln----F~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
| +|.++- +.--++.|++.| .+++.|+|-.
T Consensus 227 n-~G~~~~~~~~l~~l~~l~~~~~----~llI~DEv~~ 259 (452)
T 3n5m_A 227 G-GGILMAPQDYMKAVHETCQKHG----ALLISDEVIC 259 (452)
T ss_dssp T-TTCBCCCTTHHHHHHHHHHHHT----CEEEEECTTT
T ss_pred C-CCeeeCCHHHHHHHHHHHHHcC----CEEEEecchh
Confidence 7 898886 777788999888 5788899865
No 34
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=26.43 E-value=65 Score=21.51 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=24.4
Q ss_pred cchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 13 NYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 13 NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
|-+|.++...--.+.|++.| ..++-|++-.
T Consensus 188 nptG~~~~~~~i~~l~~~~~----~~li~De~~~ 217 (401)
T 1fc4_A 188 SMDGVIANLKGVCDLADKYD----ALVMVDDSHA 217 (401)
T ss_dssp TTTTEECCHHHHHHHHHHTT----EEEEEECTTT
T ss_pred CCCCCCCCHHHHHHHHHHcC----CEEEEECccc
Confidence 56999999888888888877 5677798874
No 35
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=26.39 E-value=73 Score=18.28 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=24.4
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEE
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMV 38 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v 38 (68)
-|.|++- -.||.-+..-|.+.+++.|+.|+.+
T Consensus 66 ~G~L~v~--l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 66 VGSLYIQ--LLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEE--EESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEE--EECCHHHHHHHHHHHHHcCCEEEEc
Confidence 3666553 3687778888999999999988764
No 36
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=26.39 E-value=49 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=25.8
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
-++++.|++|......--++.|++.|+ .++-|++-.
T Consensus 130 ~~v~~~~~~g~~~~~~~i~~l~~~~~~----~li~D~a~~ 165 (390)
T 3b8x_A 130 KAILTVNLLGNPNNFDEINKIIGGRDI----ILLEDNCES 165 (390)
T ss_dssp EEEEEECGGGCCCCHHHHHHHHTTSCC----EEEEECTTC
T ss_pred eEEEEECCccChhhHHHHHHHHHHcCC----EEEEECcCc
Confidence 355556889988888777888888773 455576655
No 37
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=25.96 E-value=38 Score=23.71 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCcEEEEEecccccccCCCCCCCCCCee
Q psy15923 23 IACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRG 59 (68)
Q Consensus 23 ~A~e~a~~~Gi~v~~v~v~DDva~~~~~~~~~~~RRG 59 (68)
||.-+..-+||++ ++..++..+.+....+..+|||
T Consensus 4 MA~t~kdl~GW~i--~~~d~~~~~~~~~~~RR~rrrg 38 (232)
T 2fl7_A 4 MAKTLKDLDGWQV--IITDDQGRVIDDNNRRRSRKRG 38 (232)
T ss_dssp -------CTTEEE--EEECSSSCBC------------
T ss_pred hhhhhhhhcCcEE--EEecCCCccCCCCCccccccCC
Confidence 6666655679887 5666666665311234566666
No 38
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=25.96 E-value=1e+02 Score=17.84 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=24.4
Q ss_pred CeEEEEEccchh-hhhcHHHHHHHHHhcCCcEEEE
Q psy15923 5 NGVLMIIANYTG-DVLNFGIACEKVKAQGHAIEMV 38 (68)
Q Consensus 5 ~GVL~iv~NYtG-DvlnF~~A~e~a~~~Gi~v~~v 38 (68)
-|.|++- -.| |.-+..-|.+.+++.|+.|+.+
T Consensus 63 ~G~L~v~--l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 63 VGFLVLH--IPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp EEEEEEE--ESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEE--EeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3666654 357 6777888999999999999865
No 39
>2kud_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=25.94 E-value=77 Score=19.01 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=24.4
Q ss_pred eEEEEEccchhhhhcHHHHHHHHHhcCCcEEEE
Q psy15923 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMV 38 (68)
Q Consensus 6 GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v 38 (68)
|-.+-+.|+.| |++.-|.+.+++.|+++...
T Consensus 6 ~~~v~vPdv~G--~~~~~A~~~L~~~gl~~~~~ 36 (140)
T 2kud_A 6 TRDVQVPDVRG--QSSADAIATLQNRGFKIRTL 36 (140)
T ss_dssp CCEECCCCCTT--SBHHHHHHHHHHHTCEEEEE
T ss_pred CCceECCccCC--CCHHHHHHHHHHCCCeEeeE
Confidence 33345789988 78899999999999988743
No 40
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=25.67 E-value=64 Score=21.15 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=25.8
Q ss_pred EEEEE--ccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 7 VLMII--ANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 7 VL~iv--~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++. .|.||.++...--++.|++.|+ .++-|++..
T Consensus 149 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~----~li~D~a~~ 186 (386)
T 2dr1_A 149 AVTITYNETSTGVLNPLPELAKVAKEHDK----LVFVDAVSA 186 (386)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTC----EEEEECTTT
T ss_pred EEEEEeecCCcchhCCHHHHHHHHHHcCC----eEEEEcccc
Confidence 34444 5678999998878888888873 556677654
No 41
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=25.45 E-value=44 Score=22.16 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=23.8
Q ss_pred cchhhhhcHHHHHHHHHhcCCcEEEEEeccccccc
Q psy15923 13 NYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALL 47 (68)
Q Consensus 13 NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~ 47 (68)
|.||.++.-. -.+.|++.| ..++-|++-..
T Consensus 165 nptG~~~~~~-l~~~~~~~~----~~li~De~~~~ 194 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAYENI----PYIISDEIYNG 194 (370)
T ss_dssp TTTCCCCCHH-HHHHHHHHC----SEEEEECTTTT
T ss_pred CCcCcccCHH-HHHHHHHcC----CEEEEEcchhh
Confidence 7899999998 788888887 45666888653
No 42
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=25.32 E-value=46 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=27.6
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
+-|++.-.||+|-+++..--++.|++.|+ .++-|++-.
T Consensus 148 ~~v~~~~~n~~G~~~~l~~I~~l~~~~~~----~livDea~~ 185 (446)
T 2x3l_A 148 KLVVLTYPNYYGETFNVEEVIKSLHQLNI----PVLIDEAHG 185 (446)
T ss_dssp CEEEEESSCTTSCCCCHHHHHHHHHHTTC----CEEEECTTC
T ss_pred eEEEEECCCCCeEecCHHHHHHHHHhcCC----eEEEcchhh
Confidence 33444446899999999888889998884 445577754
No 43
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=25.00 E-value=27 Score=23.37 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=26.7
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
-++++.|.+|......--.+.|++.|+ .++-|++-
T Consensus 125 ~~v~~~~~~G~~~~~~~i~~la~~~~~----~li~D~a~ 159 (367)
T 3nyt_A 125 KAIIPVSLYGQCADFDAINAIASKYGI----PVIEDAAQ 159 (367)
T ss_dssp EEECCBCGGGCCCCHHHHHHHHHHTTC----CBEEECTT
T ss_pred cEEEeeCCccChhhHHHHHHHHHHcCC----EEEEECcc
Confidence 355588999998888888899998884 45557763
No 44
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=25.00 E-value=39 Score=22.12 Aligned_cols=32 Identities=9% Similarity=-0.063 Sum_probs=24.8
Q ss_pred EccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 11 IANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 11 v~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
..|.+|-++...--.+.|++.| ..++-|++-.
T Consensus 180 ~~nptG~~~~l~~i~~l~~~~~----~~li~Dea~~ 211 (397)
T 3f9t_A 180 GTTELGTIDNIEELSKIAKENN----IYIHVDAAFG 211 (397)
T ss_dssp SCTTTCCBCCHHHHHHHHHHHT----CEEEEECTTG
T ss_pred CCCCCCCCCCHHHHHHHHHHhC----CeEEEEcccc
Confidence 4689999999888888899887 4566677654
No 45
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=23.98 E-value=1.5e+02 Score=19.23 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=29.1
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecc
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGE 42 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~D 42 (68)
..||+++...-|.+-+--++.+.++..|+++.-++++.
T Consensus 141 ~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~ 178 (228)
T 3of5_A 141 IPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANC 178 (228)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 45788877777777666677888888899988888764
No 46
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=23.85 E-value=42 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=25.1
Q ss_pred Eccchhhhhc----HHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 11 IANYTGDVLN----FGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 11 v~NYtGDvln----F~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
+.|.+|.++. ..--++.|++.| .+++-|++-+
T Consensus 191 ~~nptG~~~~~~~~l~~i~~l~~~~~----~~li~De~~~ 226 (392)
T 3ruy_A 191 IQGEAGINIPPAGFLKEALEVCKKEN----VLFVADEIQT 226 (392)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHTTT----CEEEEECTTT
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 3578899997 887888998887 5667788775
No 47
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=23.79 E-value=60 Score=22.34 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=25.4
Q ss_pred ccchhhhhcHHHHHHHHHhcCCcEEEEEeccccccc
Q psy15923 12 ANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALL 47 (68)
Q Consensus 12 ~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~ 47 (68)
.|-+|.++...--++.|++.| ..++-|++-..
T Consensus 150 ~n~~G~~~~l~~i~~l~~~~~----~~li~D~~~~~ 181 (412)
T 2cb1_A 150 ANPALLVPDLEALATLAEEAG----VALVVDNTFGA 181 (412)
T ss_dssp CTTTCCCCCHHHHHHHHHHHT----CEEEEECGGGT
T ss_pred CCCCcccccHHHHHHHHHHcC----CEEEEECCCcc
Confidence 688999999988889999888 45666777653
No 48
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=23.78 E-value=58 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=21.7
Q ss_pred hhhhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
.+++.+ .+.+.++++|++++.+..+|=+.
T Consensus 35 ~~il~~-~~k~~l~k~Gi~veiv~F~Dy~~ 63 (275)
T 3gxa_A 35 GDMVKE-QIQPELEKKGYTVKLVEFTDYVR 63 (275)
T ss_dssp HHHHHH-THHHHHHTTTCEEEEEEESSSSH
T ss_pred HHHHHH-HHHHHHHHcCCeEEEEEeCCcHh
Confidence 456654 35677888999999999988544
No 49
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=23.57 E-value=77 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=21.2
Q ss_pred hhhhcHHHHHHHHH-hcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVK-AQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~-~~Gi~v~~v~v~DDva 45 (68)
.+++.+ +.+.++ ++|++++.+..+|=+.
T Consensus 15 ~~i~~~--~~~~l~~~~Gi~veiv~F~Dy~~ 43 (240)
T 3tqw_A 15 TQLMEV--AKQVALNRYGLHVNIITFSDYNT 43 (240)
T ss_dssp HHHHHH--HHHHHHHHHCCCEEEEEESCTTS
T ss_pred HHHHHH--HHHHHHHhcCCeEEEEEeCChHh
Confidence 456655 667777 5799999999988654
No 50
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=23.22 E-value=1e+02 Score=20.46 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=23.8
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEe
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTV 40 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v 40 (68)
||+++..+.|.+.-.---++.+++.|.+|..+..
T Consensus 4 Il~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~ 37 (391)
T 3tsa_A 4 VLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAP 37 (391)
T ss_dssp EEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecC
Confidence 6788878999875543224556778999987653
No 51
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=23.20 E-value=49 Score=21.92 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=24.2
Q ss_pred cchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 13 NYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 13 NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
|.||-++...--.+.|++.| ..++-|++-.
T Consensus 186 nptG~~~~l~~i~~l~~~~~----~~li~De~~~ 215 (399)
T 3tqx_A 186 SMDGIIADLKSICDLADKYN----ALVMVDDSHA 215 (399)
T ss_dssp TTTTEECCHHHHHHHHHHTT----CEEEEECTTT
T ss_pred CCCCCcCCHHHHHHHHHHcC----CEEEEECCcc
Confidence 69999999888888888887 4666788763
No 52
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=23.09 E-value=65 Score=21.87 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.6
Q ss_pred EccchhhhhcHHHHHHHHHhcCCcEEEEEeccccccc
Q psy15923 11 IANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALL 47 (68)
Q Consensus 11 v~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~ 47 (68)
..|-+|.++...--++.|++.| ..++-|++-..
T Consensus 158 ~~nptG~~~~l~~i~~l~~~~~----~~li~De~~~~ 190 (398)
T 2rfv_A 158 PANPTLSLVDIETVAGIAHQQG----ALLVVDNTFMS 190 (398)
T ss_dssp SBTTTTBCCCHHHHHHHHHHTT----CEEEEECTTTC
T ss_pred CCCCCCcccCHHHHHHHHHHcC----CEEEEECCCcc
Confidence 4678999999888888999887 45666887653
No 53
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=23.05 E-value=26 Score=23.47 Aligned_cols=35 Identities=6% Similarity=0.116 Sum_probs=25.5
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
+++..|.+|.+....--++.|++.|+ .++-|++-.
T Consensus 129 ~v~~~n~tG~~~~l~~i~~la~~~~~----~li~D~a~~ 163 (388)
T 1b9h_A 129 VIMPVHMAGLMADMDALAKISADTGV----PLLQDAAHA 163 (388)
T ss_dssp EECCBCGGGCCCCHHHHHHHHHHHTC----CBCEECTTC
T ss_pred EEEEeCCccCcCCHHHHHHHHHHcCC----EEEEecchh
Confidence 34478999999888877888888874 344566554
No 54
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.03 E-value=1.3e+02 Score=20.07 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=23.8
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEe
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTV 40 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v 40 (68)
||++...+.|++.-+---++.+++.|.+|..+.-
T Consensus 18 Il~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 18 ILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp EEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcC
Confidence 7788778999987654334445678999976553
No 55
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=22.94 E-value=81 Score=21.75 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=21.2
Q ss_pred hhhhcHHHHHHHHH-hcCCcEEEEEeccccc
Q psy15923 16 GDVLNFGIACEKVK-AQGHAIEMVTVGEDCA 45 (68)
Q Consensus 16 GDvlnF~~A~e~a~-~~Gi~v~~v~v~DDva 45 (68)
.+++.+ +.+.++ ++|++++.+..+|=+.
T Consensus 18 ~~il~~--~~~~l~~k~Gi~veiv~F~Dy~~ 46 (237)
T 3k2d_A 18 AQVAEV--AAKVAKEKYGLDVELVTFTDYVT 46 (237)
T ss_dssp HHHHHH--HHHHHHHHHCCCEEEEEESCTTS
T ss_pred HHHHHH--HHHHHHHhcCCEEEEEEeCChHh
Confidence 467665 666666 6799999999988554
No 56
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=22.79 E-value=1.3e+02 Score=17.97 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=24.0
Q ss_pred CeEEEEEccchhhhhcH-HHHHHHH---HhcCC--cEEEEEeccccc
Q psy15923 5 NGVLMIIANYTGDVLNF-GIACEKV---KAQGH--AIEMVTVGEDCA 45 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF-~~A~e~a---~~~Gi--~v~~v~v~DDva 45 (68)
.-+++|+.+ ||...| .+|...| ++.|+ +|+.++-++=+-
T Consensus 8 ~K~~ivi~s--~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~ 52 (117)
T 2fb6_A 8 DKLTILWTT--DNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVK 52 (117)
T ss_dssp SEEEEEECC--CCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHH
T ss_pred CeEEEEEEc--CChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeee
Confidence 447778777 455554 4454444 35684 899988665443
No 57
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=22.68 E-value=1.3e+02 Score=19.88 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=28.5
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEe
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTV 40 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v 40 (68)
|-+-.+|++.-...=.|+.+.+++.|++|+....
T Consensus 4 I~ig~~~w~e~~i~~~i~~~~Le~~G~~Ve~~~~ 37 (256)
T 3l6g_A 4 VDLVYMNWDSEVASINVLTQAMKEHGFDVKTTAL 37 (256)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHCCCceEEEEC
Confidence 4455789999888888999999999999998753
No 58
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=22.62 E-value=79 Score=19.50 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.3
Q ss_pred hcHHHHHHHHHhcCCcEEEEEecc
Q psy15923 19 LNFGIACEKVKAQGHAIEMVTVGE 42 (68)
Q Consensus 19 lnF~~A~e~a~~~Gi~v~~v~v~D 42 (68)
+.-+++.+.++..|++++.+.+.|
T Consensus 35 ~~vdl~~~ia~~lg~~~~~~~~p~ 58 (259)
T 3g3k_A 35 YCIDLLRELSTHLGFTYEIRLVED 58 (259)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECTT
T ss_pred EHHHHHHHHHHHcCCeEEEEECCC
Confidence 456778888888999999998754
No 59
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.52 E-value=1.4e+02 Score=18.09 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=25.6
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEeccc
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGED 43 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DD 43 (68)
++-++|+-.|+|---+---+++.|++.|.++- .+++.
T Consensus 87 ~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi--~IT~~ 123 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVAALAGAAERGVPTM--ALTDS 123 (187)
T ss_dssp TTEEEEEECCSSCCHHHHHHHHHHHHTTCCEE--EEESC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEE--EEeCC
Confidence 34555666688877677678899999997764 44443
No 60
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=22.40 E-value=39 Score=22.84 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=20.8
Q ss_pred hhcHHHHHHHHHhcCCcEEEEEeccccc
Q psy15923 18 VLNFGIACEKVKAQGHAIEMVTVGEDCA 45 (68)
Q Consensus 18 vlnF~~A~e~a~~~Gi~v~~v~v~DDva 45 (68)
..-|.||.|...+.|.+++.++..++.+
T Consensus 17 ~~~~~lAv~~iN~~g~~l~~~~~d~~~~ 44 (376)
T 3hsy_A 17 YSAFRVGMVQFSTSEFRLTPHIDNLEVA 44 (376)
T ss_dssp HHHHHHHHHHTCCSSCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCeEEEEEEeecCCC
Confidence 3467888888887799998877665553
No 61
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=22.00 E-value=83 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=26.7
Q ss_pred CCeEEEEEc-cchhhhhcHHHHHHHHHhcCCcEE
Q psy15923 4 QNGVLMIIA-NYTGDVLNFGIACEKVKAQGHAIE 36 (68)
Q Consensus 4 ~~GVL~iv~-NYtGDvlnF~~A~e~a~~~Gi~v~ 36 (68)
+.||++=+. |=.|..+...-+.+.|++.|+++-
T Consensus 160 Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~ii 193 (204)
T 1tks_A 160 PAGVICELVRDEDGLMMRLDDCIQFGKKHGIKII 193 (204)
T ss_dssp SBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEE
T ss_pred ceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEE
Confidence 578888777 888888888888888888887653
No 62
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=22.00 E-value=1.1e+02 Score=20.53 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=29.3
Q ss_pred CeEEEEEccch---hh--------hhcHHHHHHHHHhcCCcEEEEEecccc
Q psy15923 5 NGVLMIIANYT---GD--------VLNFGIACEKVKAQGHAIEMVTVGEDC 44 (68)
Q Consensus 5 ~GVL~iv~NYt---GD--------vlnF~~A~e~a~~~Gi~v~~v~v~DDv 44 (68)
+-||++++|+. +| ...+=...+.+++.|++|.++-.....
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~ 60 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTF 60 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 45999999963 33 445656678888999999988765543
No 63
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=21.82 E-value=1.4e+02 Score=17.94 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.4
Q ss_pred CeEEEEEc--cchhhhhcHHHHHHHHHhcCCcEEEEEecccc
Q psy15923 5 NGVLMIIA--NYTGDVLNFGIACEKVKAQGHAIEMVTVGEDC 44 (68)
Q Consensus 5 ~GVL~iv~--NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDv 44 (68)
..++++++ .-++|..+..-+++.+++.|+++-.|-++++.
T Consensus 111 ~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~ 152 (198)
T 1n3y_A 111 AKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAF 152 (198)
T ss_dssp EEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGG
T ss_pred ceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccc
Confidence 44666664 23336556667788899999999999999876
No 64
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=21.49 E-value=1.2e+02 Score=19.83 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=24.0
Q ss_pred ccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 12 ANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 12 ~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
.|.||-++...--++.|++.| ..++-|++.+
T Consensus 154 ~nptG~~~~l~~i~~l~~~~~----~~li~D~~~~ 184 (376)
T 3f0h_A 154 ETSTAVLYDTMMIGEFCKKNN----MFFVCDCVSA 184 (376)
T ss_dssp ETTTTEECCHHHHHHHHHHTT----CEEEEECTTT
T ss_pred cCCcceecCHHHHHHHHHHcC----CEEEEEcCcc
Confidence 688999999887788899887 3556676644
No 65
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.45 E-value=1.4e+02 Score=18.02 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=25.3
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEeccc
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGED 43 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DD 43 (68)
++-++|+-.|+|---+---+++.|++.|.++ +.+++.
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~v--i~IT~~ 132 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALIPVLKRLHVPL--ICITGR 132 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHTTTCCE--EEEESC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCCE--EEEECC
Confidence 3445555558897777767889999988775 444453
No 66
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.26 E-value=1.4e+02 Score=18.04 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=24.2
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecc
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGE 42 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~D 42 (68)
++-++|+--++|---+---+++.|++.|.++ +.+++
T Consensus 79 ~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~v--i~IT~ 114 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIHTAAKAKSLHGIV--AALTI 114 (186)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEE--EEEES
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCCCEE--EEEEC
Confidence 3445555667887655556889999999776 44444
No 67
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=21.11 E-value=47 Score=22.31 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.1
Q ss_pred ccchhhhhcHHHHHHHHHhcCCcEEEEEeccccccc
Q psy15923 12 ANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALL 47 (68)
Q Consensus 12 ~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~ 47 (68)
.|.||.++...--++.|++.| ..++-|++...
T Consensus 173 ~nptG~~~~l~~i~~l~~~~~----~~li~Dea~~~ 204 (423)
T 3lvm_A 173 NNEIGVVQDIAAIGEMCRARG----IIYHVDATQSV 204 (423)
T ss_dssp CTTTCBBCCHHHHHHHHHHHT----CEEEEECTTTT
T ss_pred CCCCccccCHHHHHHHHHHcC----CEEEEEhhhhc
Confidence 468999999988888998887 45666887643
No 68
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=21.10 E-value=2e+02 Score=19.35 Aligned_cols=34 Identities=6% Similarity=0.236 Sum_probs=28.2
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEe
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTV 40 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v 40 (68)
|-+-..|+++-...-.++.+.++..|++|+...+
T Consensus 167 I~ig~~~w~e~~~~~~v~~~~Le~~Gy~Ve~~~~ 200 (268)
T 2b4l_A 167 INLAYVAWDSEIASTNVIGKVLEDLGYEVTLTQV 200 (268)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred eEEEccCccHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 4455789999888888888999999999998764
No 69
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=21.03 E-value=55 Score=22.50 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=24.5
Q ss_pred cchhhhhcHHHHHHHHHhcCCcEEEEEeccccccc
Q psy15923 13 NYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALL 47 (68)
Q Consensus 13 NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~~ 47 (68)
|-+|+++...--++.|++.| .+++-|++-..
T Consensus 205 n~tG~~~~l~~l~~l~~~~g----~~li~Dea~~~ 235 (427)
T 2w8t_A 205 SMLGDIAPLKEMVAVAKKHG----AMVLVDEAHSM 235 (427)
T ss_dssp TTTTEECCHHHHHHHHHHTT----CEEEEECTTTT
T ss_pred CCCCCccCHHHHHHHHHHcC----CEEEEECCccc
Confidence 56899999988888999887 45666888654
No 70
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=20.85 E-value=31 Score=23.02 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=25.6
Q ss_pred EEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 8 LMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 8 L~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
++++.|.+|......--.+.|++.|+ .++-|++-.
T Consensus 130 ~v~~~~~~G~~~~~~~i~~l~~~~~~----~li~D~a~~ 164 (393)
T 1mdo_A 130 AIIPVHYAGAPADLDAIYALGERYGI----PVIEDAAHA 164 (393)
T ss_dssp EECCBCGGGCCCCHHHHHHHHHHHTC----CBCEECTTC
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHcCC----eEEEECccc
Confidence 45567899999888777888888774 455577654
No 71
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=20.69 E-value=55 Score=21.16 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=22.6
Q ss_pred ccchhhhhcHHHHHHHHHhcCCcEEEEEecccccc
Q psy15923 12 ANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCAL 46 (68)
Q Consensus 12 ~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~DDva~ 46 (68)
.|-||.++.-+--.+.++..++ +++ ||+-.
T Consensus 145 ~nptG~~~~~~~l~~l~~~~~~----~iv-Dea~~ 174 (337)
T 3p1t_A 145 SNPTGQALSAGELDQLRQRAGK----LLI-DETYV 174 (337)
T ss_dssp CTTTCCCCCHHHHHHHHHHCSE----EEE-ECTTG
T ss_pred CCCCCCCCCHHHHHHHHHhCCc----EEE-ECCCh
Confidence 5779999999877778877763 566 88754
No 72
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.40 E-value=1.6e+02 Score=17.94 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=24.4
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEecc
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGE 42 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v~D 42 (68)
++-++|+--++|---+---+++.|++.|.++ +.+++
T Consensus 116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~v--I~IT~ 151 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTC--VGFTG 151 (198)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEE--EEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE--EEEEC
Confidence 3445555558887666667889999998765 44444
No 73
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=20.20 E-value=1.5e+02 Score=19.95 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=24.8
Q ss_pred EEEEEccchhhhhcHHHHHHHHHhcCCcEEEEEe
Q psy15923 7 VLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTV 40 (68)
Q Consensus 7 VL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~v 40 (68)
||++...+.|.+.-+---++.+++.|.+|..+.-
T Consensus 23 Il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 23 VLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp EEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred EEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 7788778999887664445556778999987654
No 74
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=20.17 E-value=66 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=16.0
Q ss_pred hhhhcHH-HHHHHHHhcCCcEEEEE
Q psy15923 16 GDVLNFG-IACEKVKAQGHAIEMVT 39 (68)
Q Consensus 16 GDvlnF~-~A~e~a~~~Gi~v~~v~ 39 (68)
|-..+-- -|+++++++||+++.|-
T Consensus 211 G~~~~~a~~Aa~~L~~~Gi~v~vi~ 235 (324)
T 1umd_B 211 GTVMPEVLQAAAELAKAGVSAEVLD 235 (324)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5444433 36777888999987764
No 75
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.17 E-value=1.4e+02 Score=18.00 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=24.1
Q ss_pred CeEEEEEccchhhhhcHHHHHHHHHhcCCcEEEEE
Q psy15923 5 NGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVT 39 (68)
Q Consensus 5 ~GVL~iv~NYtGDvlnF~~A~e~a~~~Gi~v~~v~ 39 (68)
++-++|+-.++|---+---+++.|++.|.++-.+.
T Consensus 82 ~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT 116 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLTVAKKAKNINNNIIAIV 116 (180)
T ss_dssp TTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEE
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 34455555688876666678899999998864443
Done!