RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15923
(68 letters)
>gnl|CDD|233835 TIGR02361, dak_ATP, dihydroxyacetone kinase, ATP-dependent. This
family consists of examples of the form of
dihydroxyacetone kinase (also called glycerone kinase)
that uses ATP (2.7.1.29) as the phosphate donor, rather
than a phosphoprotein as in E. coli. This form is
composed of a single chain with separable domains
homologous to the K and L subunits of the E. coli
enzyme, and is found in yeasts and other eukaryotes and
in some bacteria, including Citrobacter freundii. The
member from tomato has been shown to phosphorylate
dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some
other aldoses and ketoses (PMID:11985845).
Length = 574
Score = 80.1 bits (198), Expect = 1e-19
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L+I+ NYTGD LNFG+A EK KA+G+ +EMV VG+D ++ L GRRG+ G V
Sbjct: 97 GTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKG-GLVGRRGLAGTVL 155
Query: 66 VIK 68
V K
Sbjct: 156 VHK 158
>gnl|CDD|202365 pfam02733, Dak1, Dak1 domain. This is the kinase domain of the
dihydroxyacetone kinase family EC:2.7.1.29.
Length = 326
Score = 71.6 bits (176), Expect = 8e-17
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
++ G L+I+ NYTGD+L+FG+A E+ KA+G +E+V VG+D ++ + L GRRG+
Sbjct: 78 ESPKGTLLIVKNYTGDILHFGLAAERAKAEGIKVELVAVGDDVSVGRP-KGGLVGRRGLA 136
Query: 62 GIVFVIK 68
G V V K
Sbjct: 137 GTVLVHK 143
>gnl|CDD|237723 PRK14479, PRK14479, dihydroxyacetone kinase; Provisional.
Length = 568
Score = 66.8 bits (164), Expect = 5e-15
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
D GVL+I+ NY GDV+NFG+A E +A+G + V V +D A AGRRG+
Sbjct: 93 DGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVAS--APSGETAGRRGIA 150
Query: 62 GIVFVIK 68
G V V K
Sbjct: 151 GTVLVFK 157
>gnl|CDD|237724 PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK;
Provisional.
Length = 331
Score = 64.4 bits (158), Expect = 3e-14
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISL--AGRRG 59
D GVL+I+ NY+GDV+NF +A E + +G + V V +D A+ + SL GRRG
Sbjct: 94 DTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVED----SLYTQGRRG 149
Query: 60 MCGIVFVIK 68
+ G VFV K
Sbjct: 150 VAGTVFVHK 158
>gnl|CDD|185583 PTZ00375, PTZ00375, dihydroxyacetone kinase-like protein;
Provisional.
Length = 584
Score = 64.1 bits (156), Expect = 4e-14
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 3 NQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCG 62
N G L+I+ NYTGD+LNF +A E+ +A+G +E V V +D A G +A RRG+ G
Sbjct: 97 NGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAF---GTKDIANRRGIAG 153
Query: 63 IVFVIK 68
V + K
Sbjct: 154 TVLLYK 159
>gnl|CDD|233836 TIGR02363, dhaK1, dihydroxyacetone kinase, DhaK subunit. Two types
of dihydroxyacetone kinase (glycerone kinase) are
described. In yeast and a few bacteria, e.g. Citrobacter
freundii, the enzyme is a single chain that uses ATP as
phosphoryl donor and is designated EC 2.7.1.29. By
contract, E. coli and many other bacterial species have
a multisubunit form (EC 2.7.1.-) with a phosphoprotein
donor related to PTS transport proteins. This family
represents the DhaK subunit of the latter type of
dihydroxyacetone kinase, but it specifically excludes
the DhaK paralog DhaK2 (TIGR02362) found in the same
operon as DhaK and DhaK in the Firmicutes.
Length = 329
Score = 58.1 bits (141), Expect = 5e-12
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
D GVL+I+ NYTGDV+NF +A E + +G + V V +D A+ ++ + AGRRG+
Sbjct: 95 DQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDS--LYTAGRRGVA 152
Query: 62 GIVFVIK 68
G VFV K
Sbjct: 153 GTVFVHK 159
>gnl|CDD|183150 PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK;
Provisional.
Length = 356
Score = 55.0 bits (133), Expect = 8e-11
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISL--AGRRG 59
D GVL+II NYTGDVLNF A E + G + V + +D A+ + SL AGRRG
Sbjct: 94 DGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAV----KDSLYTAGRRG 149
Query: 60 MCGIVFVIK 68
+ V + K
Sbjct: 150 VANTVLIEK 158
>gnl|CDD|225251 COG2376, DAK1, Dihydroxyacetone kinase [Carbohydrate transport and
metabolism].
Length = 323
Score = 44.2 bits (105), Expect = 4e-07
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 6 GVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
G L NY GD +NFG+A E A+G + V V +D A++ + R GRRG G V
Sbjct: 97 GGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQS-RGKAEGRRGTAGDVL 155
Query: 66 VIK 68
V K
Sbjct: 156 VPK 158
>gnl|CDD|172956 PRK14483, PRK14483, DhaKLM operon coactivator DhaQ; Provisional.
Length = 329
Score = 40.0 bits (94), Expect = 1e-05
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGM 60
+ GV II N+ DV F A + + +G I+ + V +D ++ + + RRG+
Sbjct: 92 VPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR-RRGV 150
Query: 61 CGIVFVIK 68
G V + K
Sbjct: 151 AGTVLLHK 158
>gnl|CDD|213706 TIGR02362, dhaK1b, probable dihydroxyacetone kinase DhaK1b subunit.
Two types of dihydroxyacetone kinase (glycerone kinase)
are described. In yeast and a few bacteria, e.g.
Citrobacter freundii, the enzyme is a single chain that
uses ATP as phosphoryl donor and is designated EC
2.7.1.29. By contract, E. coli and many other bacterial
species have a multisubunit form with a phosphoprotein
donor related to PTS transport proteins. This family
represents a protein, unique to the Firmicutes (low GC
Gram-positives), that appears to be a divergent second
copy of the K subunit of that complex; its gene is
always found in operons with the other three proteins of
the complex.
Length = 326
Score = 35.2 bits (81), Expect = 7e-04
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 1 MDNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAG---- 56
+D GV +II N+ D+ F A ++ + +G I+ + V +D IS+
Sbjct: 90 VDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDD--------ISVEHESFK 141
Query: 57 --RRGMCGIVFVIK 68
RRG+ G + V K
Sbjct: 142 QRRRGVAGTILVHK 155
>gnl|CDD|219550 pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 53. This
domain belongs to family 53 of the glycosyl hydrolase
classification. These enzymes are enzymes are endo-1,4-
beta-galactanases (EC:3.2.1.89). The structure of this
domain is known and has a TIM barrel fold.
Length = 332
Score = 26.2 bits (58), Expect = 1.2
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 13 NYTGDVLNFGIACEKVKAQGHAIEMVTVG 41
NYT DVLN +K G +MV VG
Sbjct: 110 NYTKDVLN------TLKEAGITPDMVQVG 132
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 25.5 bits (56), Expect = 2.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 4 QNGVLMIIANYTG---------DVLNFGI-ACEKVKAQGHAIEMVTV 40
QNG +MI+ +TG D L+ I A E VK +G M T+
Sbjct: 478 QNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTMATI 524
>gnl|CDD|185375 PRK15478, cbiH, cobalt-precorrin-3B C(17)-methyltransferase;
Provisional.
Length = 241
Score = 24.5 bits (53), Expect = 5.3
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 10 IIANYTGD--VLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVF 65
++ +TGD V+ G+ C++++ AIE+ G + AL+++G AG GM G+V
Sbjct: 38 LVKAFTGDKQVIKTGM-CKEIERCQAAIELAQAGHNVALISSGD---AGIYGMAGLVL 91
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 24.2 bits (53), Expect = 6.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 13 NYTGDVLNFGIACEKVKAQGHAIEMV 38
Y G V FG+ K + H +E+
Sbjct: 300 LYCG-VGTFGLPLAKRVKKVHGVEIS 324
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.420
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,365,139
Number of extensions: 244906
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 17
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)