RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15923
(68 letters)
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A
{Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A*
1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Length = 366
Score = 87.8 bits (218), Expect = 8e-23
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
D GVL+II NYTGD+LNF A E + G + V + +D A+ ++ AGRRG+
Sbjct: 104 DGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYT--AGRRGVA 161
Query: 62 GIVFVIK 68
V + K
Sbjct: 162 NTVLIEK 168
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase;
HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Length = 336
Score = 86.9 bits (216), Expect = 1e-22
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
++ GV +II N+ D+ F A ++ + +G + + +D ++ RG+
Sbjct: 92 NSGKGVFVIIKNFEADLKEFNEAIKEARTEGIDVRYIVSHDDISVNAYNFH--KRHRGVA 149
Query: 62 GIVFVIK 68
G + + K
Sbjct: 150 GTILLHK 156
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding
subunit DHAK; dihydroxyacetone kinase subunit,
tranferase; 2.50A {Lactococcus lactis subsp}
Length = 332
Score = 86.9 bits (216), Expect = 1e-22
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
D GVL+II NY GDV+NF +A E + + +E + V +D A+ N+ GRRG+
Sbjct: 96 DEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKVEQIIVDDDIAVENSLYT--QGRRGVA 153
Query: 62 GIVFVIK 68
G V V K
Sbjct: 154 GTVLVHK 160
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter
freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Length = 552
Score = 87.3 bits (217), Expect = 2e-22
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 2 DNQNGVLMIIANYTGDVLNFGIACEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMC 61
+ G L+I+ NYTGD LNFG+A EK + G+ +EM+ VG+D +L + RG+
Sbjct: 99 TGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDN-----KHPRGIA 153
Query: 62 GIVFVIK 68
G + V K
Sbjct: 154 GTILVHK 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.10
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 14 YT-----GDVLNFGIACEKVKAQGHAI-EMVTVGED-------CALLNTGRISLAG 56
Y DV++ E V +G + V E A +N GR++ +
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAASF 1821
Score = 25.8 bits (56), Expect = 1.1
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 17/58 (29%)
Query: 3 NQNGVLMIIANYTGDVLNFGIACEK---VKAQGH--AIEMVTVGEDCALLNTGRISLA 55
+ G L+ I NY N E V A G A++ TV + +I +
Sbjct: 1835 KRTGWLVEIVNY-----N----VENQQYVAA-GDLRALD--TVTNVLNFIKLQKIDII 1880
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 26.5 bits (59), Expect = 0.52
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 25 CEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68
+ +KA+ I+ VGE A+ G + GRRG +K
Sbjct: 149 VDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGNLTVK 192
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 25.7 bits (57), Expect = 1.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 25 CEKVKAQGHAIEMVTVGEDCALLNTGRISLAGRRGMCGIVFVIK 68
E + A+ I VGE + N G + GRRG I+
Sbjct: 146 VETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQ 189
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
alpha-helical, C-terminal domain M beta-sheet
(trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
c.8.2.2 d.334.1.1
Length = 628
Score = 24.1 bits (53), Expect = 3.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 41 GEDCALLNTGRISLAGRRGMCGI 63
G AL+ GR+S A + I
Sbjct: 521 GFKVALMTDGRMSGASGKVPAAI 543
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 23.5 bits (51), Expect = 6.4
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 7/25 (28%)
Query: 31 QGHAIEMVTVGEDCALLNTGRISLA 55
G + M LN GR +A
Sbjct: 280 SGFKVAMHI-------LNNGRFGMA 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.420
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,039,253
Number of extensions: 50435
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 12
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)