BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15927
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 11 EQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN 70
+Q + D WY+EIK+Y Q+ S TGHFT ++WK TK +G+G A
Sbjct: 73 DQTGKEVADRWYSEIKNY-------NFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDG 125
Query: 71 RVVVVANYSPAGNVVR--YFNENV 92
VVA Y PAGNVV +F ENV
Sbjct: 126 SSFVVARYFPAGNVVNEGFFEENV 149
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 11 EQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN 70
+Q + D WY+EIK+Y Q+ S TGHFT ++WK TK +G+G A
Sbjct: 73 DQTGKEVADRWYSEIKNY-------NFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDG 125
Query: 71 RVVVVANYSPAGNVVR--YFNENV 92
VVA Y PAGNVV +F ENV
Sbjct: 126 SSFVVARYFPAGNVVNEGFFEENV 149
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 18 VDSWYNEIKDYKL-FGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVA 76
V +WY+EIK++ G +P GS GH+TQ++W + +G AK ++ + V
Sbjct: 81 VQAWYDEIKNFVYGIGAKPP------GSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVC 134
Query: 77 NYSPAGNV 84
Y PAGN+
Sbjct: 135 QYCPAGNI 142
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 18 VDSWYNEIKDYKL-FGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVA 76
V +WY+EIK++ G +P GS GH+TQ++W + +G AK ++ + V
Sbjct: 82 VQAWYDEIKNFVYGIGAKPP------GSVIGHYTQVVWYKSYLIGCASAKCSSSKYLYVC 135
Query: 77 NYSPAGNV 84
Y PAGN+
Sbjct: 136 QYCPAGNI 143
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 21 WYNEIKDY--KLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIG--IAKGDQN--RVVV 74
WYNE+KD+ + P+ ++ GH+TQ++W T +G G + K N + +
Sbjct: 135 WYNEVKDFDNRWISSFPSDDNILMK--VGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYL 192
Query: 75 VANYSPAGNVV 85
V NY PAGNV+
Sbjct: 193 VCNYGPAGNVL 203
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 18 VDSWYNEIKDYKLFGREPTMQELMSGS---PTGHFTQLIWKGTKAVGIGIAKGDQ---NR 71
V W +E+KDY ++ SG+ TGH+TQ++W TK VG G K Q ++
Sbjct: 135 VKMWEDEVKDY-------NPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHK 187
Query: 72 VVVVANYSPAGN 83
+V NY P+GN
Sbjct: 188 HYLVCNYGPSGN 199
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 4 GTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIG 63
G+ PI +V +A+ +WY+EI+DY R + GH+TQ++W + VG
Sbjct: 88 GSVPIF---SVSSAITNWYDEIQDYDFKTR-------ICKKVCGHYTQVVWADSYKVGCA 137
Query: 64 IA--------KGDQNRVVVVANYSPAGN 83
+ N + NY P GN
Sbjct: 138 VQFCPKVSGFDALSNGAHFICNYGPGGN 165
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 6 SPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIA 65
S + +A + A +W+ E+ + K G+ + + GH+TQ++W+ T +G +
Sbjct: 93 SGMDKAKAAEQASKAWFGELAE-KGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYV- 150
Query: 66 KGDQNRVVVVANYSPAGNVV 85
+ N VV Y PAGN++
Sbjct: 151 EACSNMCYVVCQYGPAGNMM 170
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 18 VDSWYNEIKDYKL-FGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN--RVVV 74
+ +W++E KD+K G +P + TGH+TQ++W + +G A +
Sbjct: 90 IHAWHDEYKDFKYGVGADP------PNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFF 143
Query: 75 VANYSPAGNVV 85
V Y PAGN +
Sbjct: 144 VCQYCPAGNFI 154
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 18 VDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNR--VVVV 75
+ +W+ E KD+K +G + + S + GH+TQ++W + G A ++ V
Sbjct: 90 IHAWHGEYKDFK-YG----VGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCPSSKYSYFYV 144
Query: 76 ANYSPAGNVV 85
Y PAGN++
Sbjct: 145 CQYCPAGNII 154
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 17 AVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVA 76
AV W +E Y + + G H+TQ++W+ + +G G A+ + +
Sbjct: 67 AVQLWVSERPSYNY-----ATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISC 121
Query: 77 NYSPAGNVV 85
NY P GN +
Sbjct: 122 NYDPVGNWI 130
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 12 QAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPT---GHFTQLIWKGTKAVGIGIAKGD 68
+A + A W+NE+K+Y + G + + P GH+TQ+ W T +G + +
Sbjct: 320 KAAKQASQLWWNELKEYGV-GPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCN 378
Query: 69 QNRVVVVANYSPAGNVVRY 87
+ V Y P GN + +
Sbjct: 379 -DFTFGVCQYGPGGNYMGH 396
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 21 WYNEIKDYKL-FGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN--RVVVVAN 77
W++E K++ G P GS TGH+TQ++W T G ++ + V
Sbjct: 93 WHDEYKNFVYGVGASPP------GSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQ 146
Query: 78 YSPAGN 83
Y P+GN
Sbjct: 147 YCPSGN 152
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 21 WYNEIKDYKL-FGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN--RVVVVAN 77
W++E K++ G P GS TGH+TQ++W T G ++ + V
Sbjct: 93 WHDEYKNFVYGVGANP------PGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQ 146
Query: 78 YSPAGN 83
Y P+GN
Sbjct: 147 YCPSGN 152
>pdb|3J17|A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1058
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 DQNRVVVVANYSPAGNVVRYFNENVPNV 95
D + +++ A PA N++R FN NV NV
Sbjct: 555 DTSIILLGAEREPAVNILRRFNRNVSNV 582
>pdb|3IZ3|A Chain A, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZX|A Chain A, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1058
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 68 DQNRVVVVANYSPAGNVVRYFNENVPNV 95
D + +++ A PA N++R FN NV NV
Sbjct: 555 DTSIILLGAEREPAVNILRRFNRNVSNV 582
>pdb|1KWH|A Chain A, Structure Analysis Algq2, A
Macromolecule(Alginate)-Binding Periplasmic Protein Of
Sphingomonas Sp. A1.
pdb|1J1N|A Chain A, Structure Analysis Of Algq2, A
Macromolecule(alginate)-binding Periplasmic Protein Of
Sphingomonas Sp. A1., Complexed With An Alginate
Tetrasaccharide
pdb|1J1N|B Chain B, Structure Analysis Of Algq2, A
Macromolecule(alginate)-binding Periplasmic Protein Of
Sphingomonas Sp. A1., Complexed With An Alginate
Tetrasaccharide
Length = 492
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 18 VDSWYNE-IKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAK 66
V WY E + D ++F R+ +E M G G FT + T G+AK
Sbjct: 234 VAQWYKEGLIDKEIFTRKAKAREQMFGGNLGGFTHDWFASTMTFNEGLAK 283
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 32 GREPTMQELMSGSPTGHFTQLIWKGTK-AVGIGIAKGDQNRV 72
G P E +SG TG + W+G K + IAKG +RV
Sbjct: 587 GELPDEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRV 628
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 32 GREPTMQELMSGSPTGHFTQLIWKGTK-AVGIGIAKGDQNRV 72
G P E +SG TG + W+G K + IAKG +RV
Sbjct: 591 GELPDEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRV 632
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 12 QAVQNAVDSWYNEIKDYKLFGREP-----TMQELMSGSPTGHFTQLIWKGTKAVGIGIAK 66
A+Q A + ++ L+G P T+Q L++ P G L K G G
Sbjct: 84 HAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIV 143
Query: 67 GDQNRVVVVANYSPAGNVVRYFNE 90
+ VV + + A + R NE
Sbjct: 144 RENGDVVGIVEHKDASDAQREINE 167
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 12 QAVQNAVDSWYNEIKDYKLFGREP-----TMQELMSGSPTGHFTQLIWKGTKAVGIGIAK 66
A+Q A + ++ L+G P T+Q L++ P G L K G G
Sbjct: 87 HAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIV 146
Query: 67 GDQNRVVVVANYSPAGNVVRYFNE 90
+ VV + + A + R NE
Sbjct: 147 RENGDVVGIVEHKDASDAQREINE 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,239,405
Number of Sequences: 62578
Number of extensions: 123252
Number of successful extensions: 208
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 34
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)