Query psy15927
Match_columns 98
No_of_seqs 133 out of 1028
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 16:42:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 99.9 3.7E-24 8E-29 135.1 7.6 74 12-90 62-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 99.9 5.9E-23 1.3E-27 128.6 7.7 67 13-86 62-129 (129)
3 KOG3017|consensus 99.9 9.4E-23 2E-27 137.9 6.2 88 9-98 113-206 (225)
4 cd05382 SCP_GAPR-1_like SCP_GA 99.9 3.1E-22 6.8E-27 125.3 5.7 68 10-84 65-132 (132)
5 cd05383 SCP_CRISP SCP_CRISP: S 99.8 4.6E-21 1E-25 121.4 6.9 64 13-81 73-138 (138)
6 cd05385 SCP_GLIPR-1_like SCP_G 99.8 1.2E-20 2.5E-25 120.3 7.1 63 12-81 77-144 (144)
7 smart00198 SCP SCP / Tpx-1 / A 99.8 2.5E-20 5.5E-25 118.1 7.0 69 9-81 73-144 (144)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 99.8 2.3E-19 5E-24 113.4 6.0 64 11-79 66-136 (136)
9 cd00168 SCP SCP: SCP-like extr 99.7 4.5E-18 9.9E-23 105.3 7.0 60 13-79 63-122 (122)
10 cd05380 SCP_euk SCP_euk: SCP-l 99.7 2.8E-18 6E-23 108.1 6.0 66 10-79 76-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.2 2.8E-11 6E-16 72.3 5.7 58 18-78 65-124 (124)
12 cd05379 SCP_bacterial SCP_bact 96.5 0.0056 1.2E-07 36.8 4.0 33 46-78 89-121 (122)
13 TIGR02909 spore_YkwD uncharact 96.4 0.0064 1.4E-07 37.7 4.3 33 45-77 92-124 (127)
14 KOG0286|consensus 68.1 5.3 0.00011 28.9 2.5 14 72-85 99-112 (343)
15 PF15127 DUF4565: Protein of u 27.3 62 0.0013 19.2 2.0 18 11-28 63-80 (91)
16 PF08693 SKG6: Transmembrane a 26.0 61 0.0013 16.2 1.6 11 56-66 9-19 (40)
17 KOG1673|consensus 26.0 60 0.0013 21.7 2.0 33 15-52 108-140 (205)
18 PF09907 DUF2136: Uncharacteri 25.3 70 0.0015 18.2 2.0 22 14-36 2-23 (76)
19 PF09041 Aurora-A_bind: Aurora 24.2 24 0.00052 19.6 -0.1 14 16-29 28-41 (67)
20 PF12197 lci: Bacillus cereus 22.5 49 0.0011 17.0 0.9 17 75-91 3-19 (45)
21 PHA00684 hypothetical protein 21.4 32 0.00069 21.7 0.0 12 57-68 79-90 (128)
22 PF11569 Homez: Homeodomain le 20.6 97 0.0021 16.7 1.8 12 15-26 39-50 (56)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.91 E-value=3.7e-24 Score=135.07 Aligned_cols=74 Identities=32% Similarity=0.597 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCC-CCEEEEEEecCCCCCcccccc
Q psy15927 12 QAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQ-NRVVVVANYSPAGNVVRYFNE 90 (98)
Q Consensus 12 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~GN~~g~~~~ 90 (98)
..+.++|+.|++|...|+ +.. +.| ..+..++|||||||++|++||||++.|.. +..++||+|+|+||+.|+.+|
T Consensus 62 ~~~~~~v~~W~~e~~~y~-~~~-~~~---~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 62 WSAADAVASWVSEKKYYD-YDS-NTC---AAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCHHHHHHHHHhccccCC-CCC-CCc---CCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 357889999999999999 776 333 34578999999999999999999999987 347999999999999998875
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.89 E-value=5.9e-23 Score=128.55 Aligned_cols=67 Identities=42% Similarity=0.765 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCC-CEEEEEEecCCCCCcc
Q psy15927 13 AVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN-RVVVVANYSPAGNVVR 86 (98)
Q Consensus 13 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~GN~~g 86 (98)
.+.++|+.|++|...|+ +..+ ..+..++|||||||++|++||||++.|... .+++||+|+|+||+.|
T Consensus 62 ~~~~~v~~W~~e~~~y~-~~~~------~~~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 62 SGTSAVDAWYDEIEDYD-YSNP------GFSEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CHHHHHHHHHhhhhhCC-CCCC------CCCCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 57899999999999999 8663 345679999999999999999999999873 4789999999999875
No 3
>KOG3017|consensus
Probab=99.88 E-value=9.4e-23 Score=137.92 Aligned_cols=88 Identities=26% Similarity=0.493 Sum_probs=74.5
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCC-----CEEEEEEecCCCC
Q psy15927 9 TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN-----RVVVVANYSPAGN 83 (98)
Q Consensus 9 ~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~GN 83 (98)
+.+.....+++.|+.|...|+ +.. +.|.....+..+||||||||++|++||||+++|..+ .+++||+|+|+||
T Consensus 113 ~~~~~~~~a~~~w~~e~~~~~-~~~-~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~ 190 (225)
T KOG3017|consen 113 SLDTSGALAVEAWESEFQEYD-WSS-NTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGN 190 (225)
T ss_pred cccccHHHHHHHHHHHHHHcc-Ccc-cccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCC
Confidence 344677889999999999999 888 677555568999999999999999999999999887 4699999999955
Q ss_pred Cc-cccccCCCCCCCC
Q psy15927 84 VV-RYFNENVPNVVKK 98 (98)
Q Consensus 84 ~~-g~~~~nv~~p~~~ 98 (98)
.. ++.+|..++|.++
T Consensus 191 ~~~~~~~y~~g~~cs~ 206 (225)
T KOG3017|consen 191 NINGEIPYKGGKPCSA 206 (225)
T ss_pred CcCCCCcCCCCCccCC
Confidence 54 4799999988764
No 4
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.86 E-value=3.1e-22 Score=125.29 Aligned_cols=68 Identities=51% Similarity=0.911 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCCCEEEEEEecCCCCC
Q psy15927 10 DEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVANYSPAGNV 84 (98)
Q Consensus 10 ~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~vC~Y~p~GN~ 84 (98)
....+.++|+.|++|...|+ +... ..+..+||||||||++|++||||++.|..+.+++||+|+|+||+
T Consensus 65 ~~~~~~~~v~~W~~e~~~y~-~~~~------~~~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 65 PDLTGEEAVDSWYNEIKKYD-FNKP------GFSSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred CCCCHHHHHHHHHhccccCC-CCCC------CCCCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 35578999999999999999 7642 34567999999999999999999999987668999999999995
No 5
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.84 E-value=4.6e-21 Score=121.40 Aligned_cols=64 Identities=31% Similarity=0.704 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCC--CEEEEEEecCC
Q psy15927 13 AVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN--RVVVVANYSPA 81 (98)
Q Consensus 13 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~ 81 (98)
.+.++|+.||+|..+|+ ++... + ..+..++|||||||++|++||||++.|..+ .+++||+|+|+
T Consensus 73 ~~~~av~~W~~e~~~y~-~~~~~-~---~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 73 SWSDVIQAWYDEYKDFK-YGVGA-T---PPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred CHHHHHHHHHHHHHhCC-CCCCC-C---CCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 56889999999999999 87632 2 456889999999999999999999999874 47999999984
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.83 E-value=1.2e-20 Score=120.30 Aligned_cols=63 Identities=38% Similarity=0.657 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCCC-----EEEEEEecCC
Q psy15927 12 QAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNR-----VVVVANYSPA 81 (98)
Q Consensus 12 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~-----~~~vC~Y~p~ 81 (98)
..+.++|+.||+|..+|+ +... . .+..++|||||||++|++||||+++|..+. .++||+|+|+
T Consensus 77 ~~~~~av~~W~~e~~~y~-~~~~-~-----~~~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 77 FSPKNAVTSWYNEGKFYD-FDTN-S-----CSRVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCHHHHHHHHHHHHHhCC-CCCC-C-----CCCcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 367889999999999999 8763 2 245899999999999999999999997642 6899999983
No 7
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.82 E-value=2.5e-20 Score=118.14 Aligned_cols=69 Identities=33% Similarity=0.689 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCCC---EEEEEEecCC
Q psy15927 9 TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNR---VVVVANYSPA 81 (98)
Q Consensus 9 ~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~ 81 (98)
+....+.++|+.||+|...|+ +... .+.. .+..++|||||||++|++||||++.|.++. .++||+|+|+
T Consensus 73 ~~~~~~~~av~~W~~e~~~y~-~~~~-~~~~--~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 73 LPITYASAAVQLWYDEFQDYG-YSSN-TCKD--TNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred ccchhHHHHHHHHHHHHHHcC-CCCC-cccc--CccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 356788999999999999999 8774 3321 367899999999999999999999998765 6999999984
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.79 E-value=2.3e-19 Score=113.41 Aligned_cols=64 Identities=30% Similarity=0.544 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCC-------CEEEEEEec
Q psy15927 11 EQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN-------RVVVVANYS 79 (98)
Q Consensus 11 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~-------~~~~vC~Y~ 79 (98)
...+.++|+.|++|..+|+ +.. +.| ..+..++|||||||++|++||||++.|... ..++||+|+
T Consensus 66 ~~~~~~~v~~W~~e~~~y~-~~~-~~~---~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 66 PFDATKAVEDWNNEKLDYN-YNT-NTC---APNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCC-CCC---CCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 3457899999999999999 876 444 346789999999999999999999999642 268999996
No 9
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.75 E-value=4.5e-18 Score=105.27 Aligned_cols=60 Identities=47% Similarity=0.822 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCCCEEEEEEec
Q psy15927 13 AVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVANYS 79 (98)
Q Consensus 13 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~vC~Y~ 79 (98)
.+..+++.|++|..+|+ +... ..+..++|||||||++|++||||++.|..++.++||+|.
T Consensus 63 ~~~~~v~~W~~e~~~y~-~~~~------~~~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 63 TGPAAVQAWYNEIKNYN-FGQP------GFSSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred CHHHHHHHHHHHHHhCC-CCCC------CCCCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 68899999999999999 8742 445679999999999999999999999876789999995
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.75 E-value=2.8e-18 Score=108.13 Aligned_cols=66 Identities=45% Similarity=0.814 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCC---CCEEEEEEec
Q psy15927 10 DEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQ---NRVVVVANYS 79 (98)
Q Consensus 10 ~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~---~~~~~vC~Y~ 79 (98)
....+.++|+.|++|...|+ +... +....+..++|||||||++|++||||++.|.. ...++||+|+
T Consensus 76 ~~~~~~~~v~~W~~e~~~~~-~~~~---~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 76 VEELAEDAVNAWYNELKDYG-FGSN---PTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCcC---cccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 46689999999999999999 7763 22256788999999999999999999999985 3479999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.23 E-value=2.8e-11 Score=72.27 Aligned_cols=58 Identities=33% Similarity=0.679 Sum_probs=44.8
Q ss_pred HHHHHHHhhcCCCCCCCcccccccCCCCcchhhHhhhcccceEEEEEEEcCCCC--EEEEEEe
Q psy15927 18 VDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNR--VVVVANY 78 (98)
Q Consensus 18 v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~--~~~vC~Y 78 (98)
++.|+.+...+. +...... ......++||+||+|..+++||||++.|..+. +++||+|
T Consensus 65 ~~~~~~~~~~~~-~~~~~~~--~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 65 VENWYSESKNYN-FQNQSIF--NSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp HHHHHGGGGGEE-TTCSTEE--SSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred HHHHHhcccccc-cccchhh--hccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 899999999988 5521111 14557789999999999999999999999876 8999998
No 12
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=96.47 E-value=0.0056 Score=36.76 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=28.0
Q ss_pred cchhhHhhhcccceEEEEEEEcCCCCEEEEEEe
Q psy15927 46 TGHFTQLIWKGTKAVGIGIAKGDQNRVVVVANY 78 (98)
Q Consensus 46 ~~hftqmvw~~t~~vGCa~~~c~~~~~~~vC~Y 78 (98)
.+|+.+|+|...+++|||++...++..++|..|
T Consensus 89 ~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 89 PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 589999999999999999999876656666654
No 13
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=96.45 E-value=0.0064 Score=37.73 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=27.2
Q ss_pred CcchhhHhhhcccceEEEEEEEcCCCCEEEEEE
Q psy15927 45 PTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVAN 77 (98)
Q Consensus 45 ~~~hftqmvw~~t~~vGCa~~~c~~~~~~~vC~ 77 (98)
..+|+.+|+|...+++|||++.+.+++.+.|=.
T Consensus 92 S~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~ 124 (127)
T TIGR02909 92 SPGHRANILNPNYTEIGVGYVEGGSGGIYWTQM 124 (127)
T ss_pred CHhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEE
Confidence 469999999999999999999987765555433
No 14
>KOG0286|consensus
Probab=68.07 E-value=5.3 Score=28.93 Aligned_cols=14 Identities=50% Similarity=0.838 Sum_probs=12.3
Q ss_pred EEEEEEecCCCCCc
Q psy15927 72 VVVVANYSPAGNVV 85 (98)
Q Consensus 72 ~~~vC~Y~p~GN~~ 85 (98)
.++.|.|+|.||.+
T Consensus 99 WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFV 112 (343)
T ss_pred eEEEEEECCCCCeE
Confidence 58999999999974
No 15
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=27.25 E-value=62 Score=19.20 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhcC
Q psy15927 11 EQAVQNAVDSWYNEIKDY 28 (98)
Q Consensus 11 ~~~~~~~v~~W~~e~~~y 28 (98)
..++.+||++|......|
T Consensus 63 qEIl~dAlqQWA~~n~kY 80 (91)
T PF15127_consen 63 QEILSDALQQWAENNIKY 80 (91)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 567899999999877554
No 16
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.00 E-value=61 Score=16.24 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.5
Q ss_pred ccceEEEEEEE
Q psy15927 56 GTKAVGIGIAK 66 (98)
Q Consensus 56 ~t~~vGCa~~~ 66 (98)
.+..||||++.
T Consensus 9 ~~vaIa~~VvV 19 (40)
T PF08693_consen 9 NTVAIAVGVVV 19 (40)
T ss_pred ceEEEEEEEEe
Confidence 46789999875
No 17
>KOG1673|consensus
Probab=25.97 E-value=60 Score=21.67 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccCCCCcchhhHh
Q psy15927 15 QNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQL 52 (98)
Q Consensus 15 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~~~~hftqm 52 (98)
.+.|+.||.+....+ -...+. ..+....||.++
T Consensus 108 LnSi~~WY~QAr~~N-ktAiPi----lvGTKyD~fi~l 140 (205)
T KOG1673|consen 108 LNSIKEWYRQARGLN-KTAIPI----LVGTKYDLFIDL 140 (205)
T ss_pred HHHHHHHHHHHhccC-CccceE----EeccchHhhhcC
Confidence 467899999998877 444333 345666666553
No 18
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=25.32 E-value=70 Score=18.18 Aligned_cols=22 Identities=23% Similarity=0.664 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcc
Q psy15927 14 VQNAVDSWYNEIKDYKLFGREPT 36 (98)
Q Consensus 14 ~~~~v~~W~~e~~~y~~~~~~~~ 36 (98)
.+.+++.|+.+.+.-+ |.++..
T Consensus 2 a~~~L~~W~~~~~~a~-w~~~~e 23 (76)
T PF09907_consen 2 AKQALEAWYREVKKAD-WKNPAE 23 (76)
T ss_pred hHHHHHHHHHHHHHcc-CCCHHH
Confidence 4678999999999998 877644
No 19
>PF09041 Aurora-A_bind: Aurora-A binding ; InterPro: IPR015128 The Aurora-A binding domain binds to two distinct sites on the Aurora kinase: the upstream residues bind at the N-terminal lobe, whilst the downstream residues bind in an alpha-helical conformation between the N- and C-terminal lobes. The two Aurora-A binding motifs are connected by a flexible linker that is variable in length and sequence across species. Binding of the domain results strong activation of Aurora-A and protection from deactivating dephosphorylation by phosphatase PP1 []. ; PDB: 3HA6_B 3E5A_B 1OL5_B.
Probab=24.25 E-value=24 Score=19.61 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhcCC
Q psy15927 16 NAVDSWYNEIKDYK 29 (98)
Q Consensus 16 ~~v~~W~~e~~~y~ 29 (98)
.-++.||+|..+..
T Consensus 28 ~n~DsWFeekAnlE 41 (67)
T PF09041_consen 28 ENADSWFEEKANLE 41 (67)
T ss_dssp GGGGGHHHHHHH--
T ss_pred cchHHHHHHhhccc
Confidence 34789999998865
No 20
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=22.54 E-value=49 Score=17.04 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=8.9
Q ss_pred EEEecCCCCCccccccC
Q psy15927 75 VANYSPAGNVVRYFNEN 91 (98)
Q Consensus 75 vC~Y~p~GN~~g~~~~n 91 (98)
-|.|++.|...+.|.++
T Consensus 3 ~~~~~~nGvFAN~F~~~ 19 (45)
T PF12197_consen 3 KCMYSSNGVFANSFSDD 19 (45)
T ss_dssp EEEEETT-----EEEET
T ss_pred EEEEcCCCceEEEEEcC
Confidence 58889888888877654
No 21
>PHA00684 hypothetical protein
Probab=21.37 E-value=32 Score=21.72 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=9.6
Q ss_pred cceEEEEEEEcC
Q psy15927 57 TKAVGIGIAKGD 68 (98)
Q Consensus 57 t~~vGCa~~~c~ 68 (98)
.|.||||++-..
T Consensus 79 VT~IGCGiAG~~ 90 (128)
T PHA00684 79 VTRVGCGLAGHL 90 (128)
T ss_pred eeeeccccccCC
Confidence 578999998764
No 22
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=20.57 E-value=97 Score=16.67 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhh
Q psy15927 15 QNAVDSWYNEIK 26 (98)
Q Consensus 15 ~~~v~~W~~e~~ 26 (98)
.+.|+.||.+..
T Consensus 39 ~qqVr~WFa~~~ 50 (56)
T PF11569_consen 39 YQQVRDWFAERM 50 (56)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 567999999874
Done!