RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15927
(98 letters)
>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular
protein domain, golgi-associated plant pathogenesis
related protein (GAPR)-like sub-family. The wider family
of SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), CRISPs, mammalian
cysteine-rich secretory proteins, which combine SCP with
a C-terminal cysteine rich domain, and allergen 5 from
vespid venom. It has been proposed that SCP domains may
function as endopeptidases. The human GAPR-1 protein has
been reported to dimerize, and such a dimer may form an
active site containing a catalytic triad. GAPR-1 and
GLIPR-2 appear to be synonyms.
Length = 132
Score = 101 bits (254), Expect = 2e-29
Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 1 MRGGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAV 60
G+ P + + AVDSWYNEIK Y F + S TGHFTQ++WK + +
Sbjct: 59 YASGSGP---DLTGEEAVDSWYNEIKKYD-FNKPG------FSSKTGHFTQVVWKSSTEL 108
Query: 61 GIGIAKGDQNRVVVVANYSPAGNV 84
G+G+AK + V VVA Y PAGNV
Sbjct: 109 GVGVAKSKKGCVYVVARYRPAGNV 132
>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular
protein domain, PRY1-like sub-family restricted to
fungi. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases. PRY1 is a
yeast protein that is up-regulated in core ESCRT
mutants. This PRY1-like group also contains fruiting
body proteins SC7/14 from Schizophyllum commune.
Length = 129
Score = 70.4 bits (173), Expect = 3e-17
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 14 VQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAK-GDQNRV 72
+AVD+WY+EI+DY TGHFTQL+WK T VG G
Sbjct: 63 GTSAVDAWYDEIEDYDY-------SNPGFSEATGHFTQLVWKSTTQVGCAYKDCGGAWGW 115
Query: 73 VVVANYSPAGNVV 85
+V Y PAGNV+
Sbjct: 116 YIVCEYDPAGNVI 128
>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in
eukaryotes and prokaryotes. This family includes plant
pathogenesis-related protein 1 (PR-1), which accumulates
after infections with pathogens, and may act as an
anti-fungal agent or be involved in cell wall loosening.
This family also includes CRISPs, mammalian
cysteine-rich secretory proteins, which combine SCP with
a C-terminal cysteine rich domain, and allergen 5 from
vespid venom. Roles for CRISP, in response to pathogens,
fertilization, and sperm maturation have been proposed.
One member, Tex31 from the venom duct of Conus textile,
has been shown to possess proteolytic activity sensitive
to serine protease inhibitors. The human GAPR-1 protein
has been reported to dimerize, and such a dimer may form
an active site containing a catalytic triad. SCP has
also been proposed to be a Ca++ chelating serine
protease. The Ca++-chelating function would fit with
various signaling processes that members of this family,
such as the CRISPs, are involved in, and is supported by
sequence and structural evidence of a conserved pocket
containing two histidines and a glutamate. It also may
explain how helothermine, a toxic peptide secreted by
the beaded lizard, blocks Ca++ transporting ryanodine
receptors. Little is known about the biological roles of
the bacterial and archaeal SCP domains.
Length = 122
Score = 61.3 bits (149), Expect = 1e-13
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 8 ITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKG 67
+ + AV +WYNEIK+Y + S TGH+TQ++WK T +G G+A
Sbjct: 58 GSYDMTGPAAVQAWYNEIKNYNFGQPGFS-------SGTGHYTQVVWKNTTKIGCGVAFC 110
Query: 68 DQNRVVVVANY 78
N VV NY
Sbjct: 111 GSNSYYVVCNY 121
>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain,
as found mainly in eukaryotes. This family includes
plant pathogenesis-related protein 1 (PR-1), CRISPs,
mammalian cysteine-rich secretory proteins, and allergen
5 from vespid venom. It has been proposed that SCP
domains may function as endopeptidases.
Length = 144
Score = 61.4 bits (149), Expect = 2e-13
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 2 RGGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVG 61
G ++ T E+ ++AV++WYNE+KDY + S GHFTQ++W T VG
Sbjct: 68 AGSSTGSTVEELAEDAVNAWYNELKDYGF----GSNPTNNFNSGIGHFTQMVWAKTTKVG 123
Query: 62 IGIA---KGDQNRVVVVANYS 79
+A K N+ VVV NYS
Sbjct: 124 CAVARCGKDGGNKTVVVCNYS 144
>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of
extracellular domains. Human glioma
pathogenesis-related protein GliPR and the plant
pathogenesis-related protein represent functional links
between plant defense systems and human immune system.
This family has no known function.
Length = 144
Score = 57.4 bits (139), Expect = 6e-12
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 3 GGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGI 62
+S + AV WY+E +DY + + GH+TQ++W T VG
Sbjct: 68 WSSSTALPDTYASAAVQLWYDEFQDYG-YSSNTCKD---TNGKIGHYTQVVWAKTYKVGC 123
Query: 63 GIAKGDQN---RVVVVANYSP 80
G+A + VVV NY P
Sbjct: 124 GVANCPDGTKKKTVVVCNYDP 144
>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular
protein domain, PR-1 like subfamily. The wider family of
SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), which accumulates
after infections with pathogens, and may act as an
anti-fungal agent or be involved in cell wall loosening.
It also includes CRISPs, mammalian cysteine-rich
secretory proteins, and allergen 5 from vespid venom. It
has been proposed that SCP domains may function as
endopeptidases.
Length = 136
Score = 49.6 bits (119), Expect = 5e-09
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 17 AVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNR-VVVV 75
AV SW +E K Y + +G GH+TQ++W+ T VG D V ++
Sbjct: 67 AVASWVSEKKYY-----DYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFII 121
Query: 76 ANYSPAGNVV 85
NY P GN +
Sbjct: 122 CNYDPPGNYI 131
>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein
domain, CRISP-like sub-family. The wider family of SCP
containing proteins includes plant pathogenesis-related
protein 1 (PR-1), CRISPs, mammalian cysteine-rich
secretory proteins, which combine SCP with a C-terminal
cysteine rich domain, and allergen 5 from vespid venom.
Involvement of CRISP in response to pathogens,
fertilization, and sperm maturation have been proposed.
One member, Tex31 from the venom duct of Conus textile,
has been shown to possess proteolytic activity sensitive
to serine protease inhibitors. SCP has also been
proposed to be a Ca++ chelating serine protease. The
Ca++-chelating function would fit with various signaling
processes that members of this family, such as the
CRISPs, are involved in, and is supported by sequence
and structural evidence of a conserved pocket containing
two histidines and a glutamate. It also may explain how
helothermine, a toxic peptide secreted by the beaded
lizard, blocks Ca++ transporting ryanodine receptors.
One member, DE or CRISP-1, has been shown to mediate
gamete fusion by binding to the egg surface; a sequence
motif in the SCP domain plays a role in that binding.
Length = 138
Score = 47.3 bits (113), Expect = 4e-08
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 5 TSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGI 64
+ P + +Q +WY+E KD+K +G T G+ GH+TQ++W + VG +
Sbjct: 69 SYPRSWSDVIQ----AWYDEYKDFK-YGVGATP----PGAVVGHYTQIVWYKSYLVGCAV 119
Query: 65 AK--GDQNRVVVVANYSPA 81
A + + V +Y PA
Sbjct: 120 AYCPNSKYKYFYVCHYCPA 138
>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular
protein domain, glioma pathogenesis-related protein
(GLIPR)-like sub-family. The wider family of SCP
containing proteins includes plant pathogenesis-related
protein 1 (PR-1), CRISPs, mammalian cysteine-rich
secretory proteins, and allergen 5 from vespid venom. It
has been proposed that SCP domains may function as
endopeptidases.
Length = 144
Score = 45.8 bits (109), Expect = 2e-07
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 13 AVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPT-GHFTQLIWKGTKAVGIGIA-----K 66
+ +NAV SWYNE K Y + S S GH+TQ++W + VG +A
Sbjct: 78 SPKNAVTSWYNEGKFYDF--------DTNSCSRVCGHYTQVVWATSYKVGCAVAFCPNLG 129
Query: 67 GDQNRVVVVANYSPA 81
G N + V NY+PA
Sbjct: 130 GIPNAAIFVCNYAPA 144
>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family. This is a
large family of cysteine-rich secretory proteins,
antigen 5, and pathogenesis-related 1 proteins (CAP)
that are found in a wide range of organisms, including
prokaryotes and non-vertebrate eukaryotes, The nine
subfamilies of the mammalian CAP 'super'family include:
the human glioma pathogenesis-related 1 (GLIPR1), Golgi
associated pathogenesis related-1 (GAPR1) proteins,
peptidase inhibitor 15 (PI15), peptidase inhibitor 16
(PI16), cysteine-rich secretory proteins (CRISPs), CRISP
LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain
containing 2 (CRISPLD2), mannose receptor like and the
R3H domain containing like proteins. Members are most
often secreted and have an extracellular endocrine or
paracrine function and are involved in processes
including the regulation of extracellular matrix and
branching morphogenesis, potentially as either proteases
or protease inhibitors; in ion channel regulation in
fertility; as tumour suppressor or pro-oncogenic genes
in tissues including the prostate; and in cell-cell
adhesion during fertilisation. The overall protein
structural conservation within the CAP 'super'family
results in fundamentally similar functions for the CAP
domain in all members, yet the diversity outside of this
core region dramatically alters the target specificity
and, thus, the biological consequences. The
Ca++-chelating function would fit with the various
signalling processes (e.g. the CRISP proteins) that
members of this family are involved in, and also the
sequence and structural evidence of a conserved pocket
containing two histidines and a glutamate. It also may
explain how helothermine from Heloderma horridum
horridum blocks the Ca++ transporting ryanodine
receptors.
Length = 121
Score = 44.5 bits (105), Expect = 4e-07
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 16 NAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNR-VVV 74
AV++WY+E KDY + MS GH T L+W + VG +AK V
Sbjct: 63 AAVENWYDEAKDYDA---AVGINAWMSS--PGHRTNLLWPKSTKVGCAVAKCGDGSSYYV 117
Query: 75 VANY 78
V NY
Sbjct: 118 VCNY 121
>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein
domain in HrTT-1, a tail-tip epidermis marker in
ascidians. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases.
Length = 136
Score = 37.5 bits (87), Expect = 2e-04
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 14 VQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGD----- 68
AV+ W NE DY GH+TQ++W T +G G +
Sbjct: 69 ATKAVEDWNNEKLDYNY-----NTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVL 123
Query: 69 --QNRVVVVANY 78
+N ++V NY
Sbjct: 124 RWENATLLVCNY 135
>gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded
by the rTS gene which, through alternative RNA splicing,
also encodes rTS alpha whose mRNA is complementary to
thymidylate synthase mRNA. rTS beta expression is
associated with the production of small molecules that
appear to mediate the down-regulation of thymidylate
synthase protein by a novel intercellular signaling
mechanism. A member of this family, from Xanthomonas,
has been characterized to be a L-fuconate dehydratase.
rTS beta belongs to the enolase superfamily of enzymes,
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 415
Score = 34.2 bits (79), Expect = 0.005
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 14 VQNAVDSWYNEIKDYK-LFGREPTMQELMSGSP---TGHFTQLIWKGTKAVGIGIAKGD- 68
V A++ W ++ ++K + EPT SP GH I K + IG+A G+
Sbjct: 253 VPEAIE-WVKQLAEFKPWWIEEPT-------SPDDILGHAA--IRKALAPLPIGVATGEH 302
Query: 69 -QNRVV 73
QNRVV
Sbjct: 303 CQNRVV 308
>gnl|CDD|177552 PHA03178, PHA03178, UL43 envelope protein; Provisional.
Length = 403
Score = 29.1 bits (65), Expect = 0.28
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 6 SPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIA 65
+T+ +AV + +++ +K F P + S + H T +IW +A+G G +
Sbjct: 231 RWVTEAEAVPKIEEVAEDKVSLFKFFREAPG--VIFSPAVGLHATPIIWIVLRALGYGGS 288
Query: 66 KGDQNRVVVV 75
Q VV
Sbjct: 289 NVWQTPAYVV 298
>gnl|CDD|240179 cd05379, SCP_bacterial, SCP_bacterial: SCP-like extracellular
protein domain, as found in bacteria and archaea. The
wider family of SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), CRISPs, mammalian
cysteine-rich secretory proteins, and allergen 5 from
vespid venom. It has been proposed that SCP domains may
function as endopeptidases. Little is known about the
biological roles of the bacterial and archaeal SCP
domains.
Length = 122
Score = 27.4 bits (61), Expect = 0.79
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 36 TMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVANY 78
+ M+ SP GH ++ VG+G+A G V +
Sbjct: 81 AVDGWMN-SP-GHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121
>gnl|CDD|233331 TIGR01255, pyr_form_ly_1, formate acetyltransferase 1. Alternate
names: pyruvate formate-lyase; formate
C-acetyltransferase This enzyme converts formate +
acetyl-CoA into pyruvate + CoA. This model describes
formate acetyltransferase 1. More distantly related
putative formate acetyltransferases have also been
identified, including formate acetyltransferase 2 from
E. coli, which is excluded from this model [Energy
metabolism, Fermentation].
Length = 744
Score = 28.0 bits (62), Expect = 0.81
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 22/99 (22%)
Query: 11 EQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQN 70
EQ Q VD + +++ + F R P EL SG PT W G+G D
Sbjct: 283 EQEAQEFVDDFVLKLRTVR-FLRTPEYDELFSGDPT-------WITESIAGMGN---DGR 331
Query: 71 RVVVVANY-----------SPAGNVVRYFNENVPNVVKK 98
+V ++ +P N+ ++E +P KK
Sbjct: 332 HLVTKNSFRFLNTLDTIGNAPEPNMTVLWSEKLPYSFKK 370
>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.
Length = 177
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 15 QNAVDSWYNEIKDYKLFGREPTMQELMSGS 44
+ ++D+W E+ + L+S
Sbjct: 22 KGSLDAWSEELTFLAEVAENEDLAALLSSP 51
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein
involved in transcription activation, gene silencing
and initiation of DNA replication. ABF1 is known to
remodel chromatin, and it is proposed that it mediates
its effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus
(amino acids 9 to 91 in S. cerevisiae) is thought to
contain a novel zinc-finger motif which may stabilise
the protein structure.
Length = 508
Score = 27.0 bits (59), Expect = 1.7
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 7 PITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFT 50
P+ ++ +++WY+ I DY+ R P + L + HFT
Sbjct: 20 PVMAQKRSFPTLEAWYDVINDYEFQSRCPII--LKNSHKNKHFT 61
>gnl|CDD|203610 pfam07311, Dodecin, Dodecin. Dodecin is a flavin-binding
protein,found in several bacteria and few archaea and
represents a stand-alone version of the SHS2 domain. It
most closely resembles the SHS2 domains of FtsA and
Rpb7p, and represents a single domain small-molecule
binding form.
Length = 66
Score = 24.8 bits (55), Expect = 3.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 4 GTSPITDEQAVQNAVD 19
GTSP + E A+QNA++
Sbjct: 10 GTSPESWEDAIQNAIE 25
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine
triphosphatases (GTPases). Rab GTPases form the largest
family within the Ras superfamily. There are at least 60
Rab genes in the human genome, and a number of Rab
GTPases are conserved from yeast to humans. Rab GTPases
are small, monomeric proteins that function as molecular
switches to regulate vesicle trafficking pathways. The
different Rab GTPases are localized to the cytosolic
face of specific intracellular membranes, where they
regulate distinct steps in membrane traffic pathways. In
the GTP-bound form, Rab GTPases recruit specific sets of
effector proteins onto membranes. Through their
effectors, Rab GTPases regulate vesicle formation,
actin- and tubulin-dependent vesicle movement, and
membrane fusion. GTPase activating proteins (GAPs)
interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular organisms
possess 5-20 Rab members, several have been found to
possess 60 or more Rabs; for many of these Rab isoforms,
homologous proteins are not found in other organisms.
Most Rab GTPases contain a lipid modification site at
the C-terminus, with sequence motifs CC, CXC, or CCX.
Lipid binding is essential for membrane attachment, a
key feature of most Rab proteins. Since crystal
structures often lack C-terminal residues, the lipid
modification site is not available for annotation in
many of the CDs in the hierarchy, but is included where
possible.
Length = 159
Score = 25.1 bits (56), Expect = 5.3
Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 8 ITDEQAVQNAVDSWYNEIKDY 28
+T+ ++ +N +D W NE+K+Y
Sbjct: 82 VTNRESFEN-LDKWLNELKEY 101
>gnl|CDD|226753 COG4303, EutB, Ethanolamine ammonia-lyase, large subunit [Amino
acid transport and metabolism].
Length = 453
Score = 25.5 bits (56), Expect = 5.5
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 4 GTSPITDEQAVQNAVDSWYNEIKD-YKLFGREPT-----------MQELMSGSPTGHFTQ 51
G +P+TD + V + + D Y + PT ++ + G+P Q
Sbjct: 191 GVNPVTDSVESVSRVLDTFYGVIDKYNI----PTQGCVLAHVTTQIEAIRRGAPGDLIFQ 246
Query: 52 LIW---KGTKAVGIGIAKGDQNRVVVVANYSPAGNVVRYF 88
I KG K G+ +A D+ R + + AG YF
Sbjct: 247 SIAGSEKGNKEFGVSLAMLDEARALGLEFNRIAGPNCMYF 286
>gnl|CDD|235243 PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 257
Score = 24.5 bits (54), Expect = 9.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 76 ANYSPAGNVVRYFNENVPNV 95
AN S G +V F E + N+
Sbjct: 149 ANVSGIGEIVEEFEEEILNL 168
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.394
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,008,017
Number of extensions: 406568
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 27
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)