RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15927
(98 letters)
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding
protein, golgi apparatus, myristate; HET: I6P; 1.50A
{Homo sapiens} PDB: 1smb_A*
Length = 154
Score = 93.5 bits (233), Expect = 3e-26
Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 15 QNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVV 74
+ D WY+EIK+Y F + P S TGHFT ++WK TK +G+G A V
Sbjct: 77 KEVADRWYSEIKNYN-FQQ-PGFT-----SGTGHFTAMVWKNTKKMGVGKASASDGSSFV 129
Query: 75 VANYSPAGNVV--RYFNENVP 93
VA Y PAGNVV +F ENV
Sbjct: 130 VARYFPAGNVVNEGFFEENVL 150
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense;
NMR {Solanum lycopersicum} SCOP: d.111.1.1
Length = 135
Score = 88.4 bits (220), Expect = 2e-24
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 14 VQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVV 73
+ AV W +E Y + + G H+TQ++W+ + +G G A+ +
Sbjct: 64 GRAAVQLWVSERPSYN-YATNQCV----GGKKCRHYTQVVWRNSVRLGCGRARCNNGWWF 118
Query: 74 VVANYSPAGNVV 85
+ NY P GN +
Sbjct: 119 ISCNYDPVGNWI 130
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Length = 196
Score = 86.4 bits (214), Expect = 6e-23
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 3 GGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGI 62
S + +A + A +W+ E+ + G+ + + GH+TQ++W+ T +G
Sbjct: 90 SSDSGMDKAKAAEQASKAWFGELAEKG-VGQNLKLTGGLFSRGVGHYTQMVWQETVKLGC 148
Query: 63 GIAKGDQNRVVVVANYSPAGNVV 85
+ N VV Y PAGN++
Sbjct: 149 YVEACS-NMCYVVCQYGPAGNMM 170
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 80.7 bits (199), Expect = 1e-20
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 4 GTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIG 63
+S ++ + WYNE+KD+ + GH+TQ++W T +G G
Sbjct: 118 TSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCG 177
Query: 64 IAK----GDQNRVVVVANYSPAGNVV 85
+ + +V NY PAGNV+
Sbjct: 178 RIMFKEPDNWTKHYLVCNYGPAGNVL 203
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 80.3 bits (198), Expect = 2e-20
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 9 TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGD 68
+ V +WY+EIK++ + GS GH+TQ++W + +G AK
Sbjct: 72 SQPFPWSGVVQAWYDEIKNFV-----YGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCS 126
Query: 69 QNRVVVVANYSPAGNVV 85
++ + V Y PAGN+
Sbjct: 127 SSKYLYVCQYCPAGNIR 143
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 82.8 bits (204), Expect = 2e-20
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 3 GGTSPITDEQAVQNAVDSWYNEIKDYKLFGRE--PTMQELMSGSPTGHFTQLIWKGTKAV 60
+A + A W+NE+K+Y + T GH+TQ+ W T +
Sbjct: 311 TSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKL 370
Query: 61 GIGIAKGDQNRVVVVANYSPAGNVV 85
G + + + V Y P GN +
Sbjct: 371 GCAVVFCN-DFTFGVCQYGPGGNYM 394
Score = 71.7 bits (175), Expect = 2e-16
Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 3 GGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGI 62
++ + W++ K + +G F+ +++ T +G
Sbjct: 108 SSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNK-----YTGGGLFAFSNMVYSETTKLGC 162
Query: 63 GIAKGDQNRVVVVANYSPAGNVVRYFNENVPN 94
++ V Y+ G +
Sbjct: 163 AYKVCG-TKLAVSCIYNGVGYITNQPMWETGQ 193
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 79.9 bits (197), Expect = 3e-20
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 9 TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAK-- 66
++ + + W++E K++ + GS TGH+TQ++W T G ++
Sbjct: 81 SNARTWTEIIHLWHDEYKNFV-----YGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCP 135
Query: 67 GDQNRVVVVANYSPAGNVV 85
V Y P+GN
Sbjct: 136 SSAWSYFYVCQYCPSGNFQ 154
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula
vulgaris} SCOP: d.111.1.1
Length = 209
Score = 79.1 bits (195), Expect = 5e-20
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 4 GTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIG 63
S V W +E+KDY ++ + TGH+TQ++W TK VG G
Sbjct: 121 TGSTAAKYDDPVKLVKMWEDEVKDYN-PKKKFSGN---DFLKTGHYTQMVWANTKEVGCG 176
Query: 64 IA---KGDQNRVVVVANYSPAGNVV 85
+ ++ +V NY P+GN
Sbjct: 177 SIKYIQEKWHKHYLVCNYGPSGNFK 201
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 73.8 bits (181), Expect = 5e-18
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 9 TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAK-- 66
+V +A+ +WY+EI+DY F GH+TQ++W + VG +
Sbjct: 90 VPIFSVSSAITNWYDEIQDYD-FKTRI------CKKVCGHYTQVVWADSYKVGCAVQFCP 142
Query: 67 ------GDQNRVVVVANYSPAGNV 84
N + NY P GN
Sbjct: 143 KVSGFDALSNGAHFICNYGPGGNY 166
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 59.7 bits (144), Expect = 1e-12
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 4 GTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIG 63
G ++ + +AV + + + +E I AVG G
Sbjct: 113 GDKLPRIKELIDDAVKKGHLQKHNIT-REIIENYRENGPNGDVKELALAISDRVTAVGCG 171
Query: 64 IA---KGDQNRVVVVANYSPAGNVV 85
+ G + R ++ N+S N
Sbjct: 172 LTTWEDGAKARALLTCNFSS-QNTR 195
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function;
2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Length = 206
Score = 40.4 bits (94), Expect = 2e-05
Identities = 8/86 (9%), Positives = 20/86 (23%), Gaps = 26/86 (30%)
Query: 3 GGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGI 62
G + A++ ++++ + Q+++ G
Sbjct: 81 SGDYEGSAISALKEILETFSADK---------------------NSMRQVVYPKATRFGC 119
Query: 63 GIA-----KGDQNRVVVVANYSPAGN 83
K R+ V Y
Sbjct: 120 SGRLRRNKKTGMRRMDWVCVYDKKPK 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.017
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 33/97 (34%)
Query: 2 RGGTSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVG 61
RG +Q AV +Y + P G F+Q + + V
Sbjct: 1789 RG--------MTMQVAVPRDELGRSNYGMIAINP-------GRVAASFSQ---EALQYVV 1830
Query: 62 IGIAKGDQNRVVVVANYSPAGNVVRYFNENVPN--VV 96
+ K +V + NY NV N V
Sbjct: 1831 ERVGK-RTGWLVEIVNY------------NVENQQYV 1854
Score = 26.2 bits (57), Expect = 2.3
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 35/90 (38%)
Query: 9 TDEQAVQNAVDSWYNEIKDY---KLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIA 65
+ IK+Y ++ + P + L +AVG G A
Sbjct: 110 QENDTTLVKTKEL---IKNYITARIMAKRPF--------DKKSNSALF----RAVGEGNA 154
Query: 66 K-----GDQNRVVVVANYSPAGNVVRYFNE 90
+ G Q GN YF E
Sbjct: 155 QLVAIFGGQ------------GNTDDYFEE 172
>3enp_A TP53RK-binding protein; keops complex telomere kinase regulator,
nucleus, hydrolase; 2.48A {Homo sapiens}
Length = 177
Score = 25.7 bits (56), Expect = 2.5
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 6 SPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIA 65
+ I D + A + + K K+ R + + + + SP + ++ + K GI+
Sbjct: 48 TVIVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKK------FGIS 101
Query: 66 KGDQNRVVVVANYSPAGNVVRYFNENV 92
D + ++V Y V
Sbjct: 102 ANDTSILIVYIEEGEKQINQEYLISQV 128
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 25.4 bits (56), Expect = 3.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 8 ITDEQAVQNAVDSWYNEIKDY 28
++ QA +A+ W IK
Sbjct: 89 LSKGQAEVDAMKPWLFNIKAR 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 25.1 bits (55), Expect = 4.1
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 42 SGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVVVVANYSPAGNVVRYF 88
+ F + KG+ + QN + + Y+ + F
Sbjct: 317 FTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF 363
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands;
HET: LUM; 1.27A {Halobacterium salinarum} SCOP:
d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A*
2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Length = 68
Score = 24.2 bits (53), Expect = 4.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 4 GTSPITDEQAVQNAVD 19
GTS + A +A+D
Sbjct: 10 GTSEESFTAAADDAID 25
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea;
HET: RBF; 2.60A {Halorhodospira halophila}
Length = 72
Score = 24.2 bits (53), Expect = 5.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 4 GTSPITDEQAVQNAVD 19
G+SP E+AV NA+
Sbjct: 13 GSSPNGIEEAVNNAIA 28
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus}
SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A
2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Length = 69
Score = 23.8 bits (52), Expect = 6.3
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 4 GTSPITDEQAVQNAVD 19
GTS E A+Q A+
Sbjct: 12 GTSEEGLEAAIQAALA 27
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding
protein, dodecamer, imuuno antigen, metal binding
protein; 1.80A {Mycobacterium tuberculosis}
Length = 72
Score = 23.5 bits (51), Expect = 6.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 4 GTSPITDEQAVQNAVD 19
GTSP + EQA AV
Sbjct: 12 GTSPTSWEQAAAEAVQ 27
>2yiz_A Dodecin; flavoprotein, flavin binding protein,
protein-engineering, P storage protein; HET: COA FMN
GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A
2yj0_A*
Length = 69
Score = 23.4 bits (51), Expect = 7.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 4 GTSPITDEQAVQNAVD 19
GTSP + A+Q +
Sbjct: 12 GTSPDGVDAAIQGGLA 27
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 24.1 bits (53), Expect = 9.5
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 8 ITDEQAVQNAVDSWYNEIKDY 28
IT+E++ V W +IK Y
Sbjct: 105 ITNEESFNA-VQDWATQIKTY 124
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins,
structural genomics, J center for structural genomics,
JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Length = 454
Score = 24.3 bits (53), Expect = 9.8
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 8 ITDEQAVQNAVDSWYNEIKDYKLFGRE-PTMQELMSG 43
V NAV+ Y+ + +G ++
Sbjct: 10 FRTVTDVDNAVNGLYDLMSGSGYYGAAMFAYGDMKGD 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.394
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,527,481
Number of extensions: 79970
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 47
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)