RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15927
         (98 letters)



>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket
           (Vespula vulgaris), Ves v 5 [TaxId: 7454]}
          Length = 209

 Score = 63.8 bits (154), Expect = 1e-14
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 5   TSPITDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGI 64
            S           V  W +E+KDY                 TGH+TQ++W  TK VG G 
Sbjct: 122 GSTAAKYDDPVKLVKMWEDEVKDYNP----KKKFSGNDFLKTGHYTQMVWANTKEVGCGS 177

Query: 65  AK---GDQNRVVVVANYSPAGNVV 85
            K      ++  +V NY P+GN  
Sbjct: 178 IKYIQEKWHKHYLVCNYGPSGNFK 201


>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 58.4 bits (140), Expect = 7e-13
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 9   TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGD 68
           + +Q  +   D WY+EIK+Y         Q+    S TGHFT ++WK TK +G+G A   
Sbjct: 68  SYDQTGKEVADRWYSEIKNY-------NFQQPGFTSGTGHFTAMVWKNTKKMGVGKASAS 120

Query: 69  QNRVVVVANYSPAGNVV--RYFNENVP 93
                VVA Y PAGNVV   +F ENV 
Sbjct: 121 DGSSFVVARYFPAGNVVNEGFFEENVL 147


>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
           (SteCRISP) {Chinese green tree viper (Trimeresurus
           stejnegeri) [TaxId: 39682]}
          Length = 164

 Score = 55.7 bits (133), Expect = 1e-11
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 7/86 (8%)

Query: 9   TDEQAVQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAK-- 66
                  + + +W++E KD+K       +      + TGH+TQ++W  +  +G   A   
Sbjct: 81  PYPMKWTDIIHAWHDEYKDFK-----YGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCP 135

Query: 67  GDQNRVVVVANYSPAGNVVRYFNENV 92
                   V  Y PAGN +       
Sbjct: 136 SSPYSYFFVCQYCPAGNFIGKTATPY 161


>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato
           (Lycopersicon esculentum), P14a [TaxId: 4081]}
          Length = 135

 Score = 53.3 bits (127), Expect = 4e-11
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 14  VQNAVDSWYNEIKDYKLFGREPTMQELMSGSPTGHFTQLIWKGTKAVGIGIAKGDQNRVV 73
            + AV  W +E   Y          + + G    H+TQ++W+ +  +G G A+ +     
Sbjct: 64  GRAAVQLWVSERPSYN-----YATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWF 118

Query: 74  VVANYSPAGNVV 85
           +  NY P GN +
Sbjct: 119 ISCNYDPVGNWI 130


>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671
          {Streptomyces avermitilis [TaxId: 33903]}
          Length = 153

 Score = 25.2 bits (54), Expect = 1.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 6  SPITDEQAVQNAVDSWYN 23
          +P TD + V  A  ++Y 
Sbjct: 1  TPDTDVEQVGLANTAFYE 18


>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431
          {Thermus thermophilus [TaxId: 274]}
          Length = 66

 Score = 23.4 bits (51), Expect = 2.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 4  GTSPITDEQAVQNAVD 19
          GTS    E A+Q A+ 
Sbjct: 11 GTSEEGLEAAIQAALA 26


>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin
          {Archaeon Halobacterium salinarum [TaxId: 2242]}
          Length = 64

 Score = 23.4 bits (51), Expect = 2.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 4  GTSPITDEQAVQNAVD 19
          GTS  +   A  +A+D
Sbjct: 9  GTSEESFTAAADDAID 24


>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate
           decarboxylase {Plasmodium falciparum (isolate 3D7)
           (Plasmodium falciparum 3D7) [TaxId: 36329]}
          Length = 323

 Score = 24.2 bits (51), Expect = 3.3
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 61  GIGIAKGDQNRVV 73
           GIG   GD ++ +
Sbjct: 265 GIGAQNGDLHKTL 277


>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase
           (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
          Length = 332

 Score = 24.2 bits (51), Expect = 4.1
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 61  GIGIAKGDQNRVV 73
           G+G  KGD  +++
Sbjct: 277 GVGAQKGDLRKML 289


>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
           (AspRS) {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 23.6 bits (50), Expect = 5.4
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 25  IKDYKLFGREPTMQELMSGSPT 46
           I+D   F +      LM+ +P+
Sbjct: 309 IRDVIAFPKTTAAACLMTEAPS 330


>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate
           decarboxylase {Plasmodium berghei [TaxId: 5821]}
          Length = 324

 Score = 23.4 bits (49), Expect = 6.3
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 61  GIGIAKGDQNRVVVVANYSPAGNVV 85
           GIG   GD  + +          ++
Sbjct: 267 GIGAQNGDLYKTLKNGYNKDYEKLL 291


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,368
Number of extensions: 14732
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 12
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)