BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15928
         (485 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
 pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
           Phenylalanyl-T Synthetase
          Length = 589

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 160/239 (66%), Gaps = 42/239 (17%)

Query: 2   PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
           PLNKL++ LR D+A AGFTE LTFALCS++D++ KL   +    AVHI NPKT EFQ+AR
Sbjct: 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVAR 451

Query: 62  TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
           TTL+PGLLKT+AAN+KMPLPLKLFEISDIV KD+  +VGA+N R+L AVYYNK+PGFEII
Sbjct: 452 TTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEII 511

Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
           HGLLDR+MQLL +P  + +G                                        
Sbjct: 512 HGLLDRIMQLLDVPPGEDKG---------------------------------------- 531

Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
             GY I+A++   FFP RCA +  RG  +G +GVLHP+V+ KFELT+PCS LEINI PF
Sbjct: 532 --GYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPF 588



 Score =  222 bits (566), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 150/236 (63%), Gaps = 24/236 (10%)

Query: 234 EINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIIN 293
           +I  +P N  K  Y+        +T + LK YL II + P+YPVI D NGVVLS+PPIIN
Sbjct: 180 DIKFKPLNKTKE-YTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238

Query: 294 SHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSAR 353
             HSRI+VNTRNIFIECT TD TKAKIVLD +VTMFS+YCE+++ VE+ EV+  +G S  
Sbjct: 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHT 298

Query: 354 YPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMC 413
           +PEL  RKE+V      K +GI                        E+ + +A LLT+M 
Sbjct: 299 FPELAYRKEMVRADLINKKVGI-----------------------RETPENLAKLLTRMY 335

Query: 414 LQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQL 469
           L+++++G G ++ + IPPTR DIIH CDI ED AIAYGYNNI  T+P+  +IA Q 
Sbjct: 336 LKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQF 391


>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The
           Phenylalanyl-Trna Synthetase Beta-Subunit From
           Pyrococcus Horikoshii
 pdb|2CXI|B Chain B, Crystal Structure Of An N-Terminal Fragment Of The
           Phenylalanyl-Trna Synthetase Beta-Subunit From
           Pyrococcus Horikoshii
 pdb|2CXI|C Chain C, Crystal Structure Of An N-Terminal Fragment Of The
           Phenylalanyl-Trna Synthetase Beta-Subunit From
           Pyrococcus Horikoshii
          Length = 348

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 30/195 (15%)

Query: 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHS-RISVNTRNIFIECTATDLTK 317
           H + ++Y  +I+D   YP++ D  G VLS PPIINS  + R++ +T+N+FI+ T   L K
Sbjct: 183 HEKGREYGHLIKDKQFYPLLIDSEGNVLSXPPIINSEFTGRVTTDTKNVFIDVTGWKLEK 242

Query: 318 AKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQ 377
             + L+  VT      E    + S  V+  D      P+L  ++  V +    K      
Sbjct: 243 VXLALNVXVTAL---AERGGKIRSVRVVYKD-FEIETPDLTPKEFEVELDYIRK------ 292

Query: 378 GGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDII 437
                          L+GL  ++   ++  LL K   + +I    A+L    P  R DI 
Sbjct: 293 ---------------LSGLELNDG--EIKELLEKXXYEVEISRGRAKLKY--PAFRDDIX 333

Query: 438 HTCDIYEDIAIAYGY 452
           H  DI ED+ IAYGY
Sbjct: 334 HARDILEDVLIAYGY 348


>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
          Length = 795

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 385 DVSADKDPLNG-LCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIY 443
           D++A+K  +N  + F+ S D++ S+  ++  +T +   G  L+V++P  R DI    D+ 
Sbjct: 410 DITAEK--VNKTIGFNLSNDEIQSIFRQLGFETTL--KGETLTVNVPSRRKDITIKEDLI 465

Query: 444 EDIAIAYGYNNIPKTMPRFASI 465
           E++A  YGY+ IP ++P F  +
Sbjct: 466 EEVARIYGYDEIPSSLPVFGEV 487


>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
 pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
           Engineering And Inhibitor Studies
          Length = 800

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 385 DVSADKDPLNG-LCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIY 443
           D++A+K  +N  + F+ S D++ S+  ++  +T +   G  L+V++P  R DI    D+ 
Sbjct: 414 DITAEK--VNKTIGFNLSNDEIQSIFRQLGFETTL--KGETLTVNVPSRRKDITIKEDLI 469

Query: 444 EDIAIAYGYNNIPKTMPRFASI 465
           E++A  YGY+ IP ++P F  +
Sbjct: 470 EEVARIYGYDEIPSSLPVFGEV 491


>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
 pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
          Length = 795

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 43/220 (19%)

Query: 18  GFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 76
           G+ EV+T++      V  K++Q +   + A+ + +P ++E    R +L  GLL T+  N+
Sbjct: 506 GYQEVITYSF-----VDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQ 560

Query: 77  -KMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIP 135
            +    +++FE       D  A +G R    L  V                         
Sbjct: 561 NRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVIC----------------------- 597

Query: 136 LDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATF 195
                G       NL      ++  F  + G L+ V+ L    L++ E    +A  N   
Sbjct: 598 -----GNRYEEHWNLA----KETVDFYDLKGDLESVLDLTG-KLNEVE---FRAEANPAL 644

Query: 196 FPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEI 235
            P + A + L+G +IG +GV+HPE+  K +L     + E+
Sbjct: 645 HPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFEL 684



 Score = 32.7 bits (73), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 277 VITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDK 336
           VI D N   L++  I    HS ++  T+N+ +EC                +  S     +
Sbjct: 303 VIADHNKA-LAMGGIFGGEHSGVNDETQNVLLECA-------------FFSPLSITGRAR 348

Query: 337 YHVESCEVLRSDGTSARY-----PELKVRKEVVNVKKATKY-IGITQGGQSPDQDVSAD- 389
            H      L +D  S RY     P L+ +     +++AT+  I I  G   P  D++ + 
Sbjct: 349 RHG-----LHTD-ASHRYERGVDPALQHKA----MERATRLLIDICGGEAGPVIDITNEA 398

Query: 390 -----------KDPLNGLCFSESTD-KVASLLTKMCLQTKILGSGAELSVSIPPTRHDII 437
                      +  L+ L      D +V  +L +  L  ++     E     P  R D+ 
Sbjct: 399 TLPKRATITLRRSKLDRLIGHHIADEQVTDILRR--LGCEVTEGKDEWQAVAPSWRFDME 456

Query: 438 HTCDIYEDIAIAYGYNNIP 456
              D+ E++A  YGYNNIP
Sbjct: 457 IEEDLVEEVARVYGYNNIP 475


>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
           Complexed With Trna And A Phenylalanyl-Adenylate Analog
          Length = 785

 Score = 37.0 bits (84), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 54/233 (23%)

Query: 7   SDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVP 66
             +LR  ++  GF EV T++    +D     R+   D P + + NP   E    RT L P
Sbjct: 495 EQRLREVLSGLGFQEVYTYSFMDPEDA----RRFRLDPPRLLLLNPLAPEKAALRTHLFP 550

Query: 67  GLLKTLAANKKMPLPLK--LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGL 124
           GL++ L  N  +  P +  LFE+  +  +        R + +L  + + +  G       
Sbjct: 551 GLVRVLKENLDLDRPERALLFEVGRVFRE--------REETHLAGLLFGEGVG------- 595

Query: 125 LDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEG 184
                    +P  K                  +  G+ ++ G L+ +   L +       
Sbjct: 596 ---------LPWAK-----------------ERLSGYFLLKGYLEALFARLGL------A 623

Query: 185 YCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINI 237
           + ++A       P     V++ G ++G +G LHPE+  + EL  P  + E+ +
Sbjct: 624 FRVEAEAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRL 675



 Score = 32.3 bits (72), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 393 LNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGY 452
           L G  + E+ +++A L    C   ++ G G    V+ P  R D+    D+ E++A   GY
Sbjct: 414 LLGTSYPEA-EQIAILKRLGC---RVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIEGY 469

Query: 453 NNIPKTMPRF 462
             IP  +P F
Sbjct: 470 ETIPLALPAF 479


>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
 pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
           Phenylalaninyl-Adenylate
 pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
           Thermus Thermophilus Complexed With Cognate Trnaphe
 pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
 pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
           Synthetase Complexed With Phenylalanyl-adenylate In The
           Presence Of Manganese
 pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
           Synthetase Complexed With P-cl-phenylalanine
 pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
           Synthetase Complexed With
           5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
 pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
           Complexed With L- Tyrosine
 pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
           Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
 pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
           Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
          Length = 785

 Score = 37.0 bits (84), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 54/233 (23%)

Query: 7   SDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVP 66
             +LR  ++  GF EV T++    +D     R+   D P + + NP   E    RT L P
Sbjct: 495 EQRLREVLSGLGFQEVYTYSFMDPEDA----RRFRLDPPRLLLLNPLAPEKAALRTHLFP 550

Query: 67  GLLKTLAANKKMPLPLK--LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGL 124
           GL++ L  N  +  P +  LFE+  +  +        R + +L  + + +  G       
Sbjct: 551 GLVRVLKENLDLDRPERALLFEVGRVFRE--------REETHLAGLLFGEGVG------- 595

Query: 125 LDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEG 184
                    +P  K                  +  G+ ++ G L+ +   L +       
Sbjct: 596 ---------LPWAK-----------------ERLSGYFLLKGYLEALFARLGL------A 623

Query: 185 YCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINI 237
           + ++A       P     V++ G ++G +G LHPE+  + EL  P  + E+ +
Sbjct: 624 FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRL 675



 Score = 32.7 bits (73), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 393 LNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGY 452
           L G  + E+ +++A L    C   ++ G G    V+ P  R D+    D+ E++A   GY
Sbjct: 414 LLGTSYPEA-EQIAILKRLGC---RVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGY 469

Query: 453 NNIPKTMPRF 462
             IP  +P F
Sbjct: 470 ETIPLALPAF 479


>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
 pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
 pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
          Length = 853

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADN 192
           GF   HG +DR+M +++  LD  E   +  ADN
Sbjct: 357 GFSPFHGGMDRIMTIIRDSLDNDEDLVMIYADN 389


>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus In Complex With Magnesium
 pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus In Complex With Magnesium
 pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus In Complex With Magnesium
 pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus In Complex With Magnesium
 pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus In Complex With Magnesium
 pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
 pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
          Length = 799

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADN 192
           GF   HG +DR+M +++  LD  E   +  ADN
Sbjct: 357 GFSPFHGGMDRIMTIIRDSLDNDEDLVMIYADN 389


>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
           Pancreatic Necrosis Virus
          Length = 770

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADN 192
           GF   HG +DR+M +++  LD  E   +  ADN
Sbjct: 357 GFSPFHGGMDRIMTIIRDSLDNDEDLVMIYADN 389


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,641,416
Number of Sequences: 62578
Number of extensions: 544571
Number of successful extensions: 1015
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 23
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)