Query psy15928
Match_columns 485
No_of_seqs 264 out of 2290
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:43:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00769 PheRS_beta_core Phenyl 100.0 8.4E-42 1.8E-46 325.6 22.9 196 3-240 2-198 (198)
2 CHL00192 syfB phenylalanyl-tRN 100.0 5E-40 1.1E-44 365.3 19.5 218 2-285 399-622 (704)
3 PRK00629 pheT phenylalanyl-tRN 100.0 6.5E-40 1.4E-44 369.5 20.2 219 2-284 488-708 (791)
4 COG0072 PheT Phenylalanyl-tRNA 100.0 6.7E-40 1.5E-44 360.8 16.6 217 2-284 352-569 (650)
5 TIGR00472 pheT_bact phenylalan 100.0 1.1E-38 2.3E-43 360.2 20.1 221 4-284 494-716 (798)
6 PLN02265 probable phenylalanyl 100.0 2.9E-37 6.3E-42 337.5 22.6 196 2-240 398-596 (597)
7 PRK09616 pheT phenylalanyl-tRN 100.0 6.2E-37 1.3E-41 333.0 21.7 191 2-242 360-550 (552)
8 TIGR00471 pheT_arch phenylalan 100.0 1.6E-36 3.5E-41 329.5 22.9 186 2-240 363-550 (551)
9 PLN02265 probable phenylalanyl 100.0 4E-36 8.6E-41 328.6 17.8 189 259-470 209-398 (597)
10 cd00496 PheRS_alpha_core Pheny 100.0 1.7E-35 3.7E-40 286.4 19.5 190 1-244 1-203 (218)
11 TIGR00471 pheT_arch phenylalan 100.0 1.1E-33 2.5E-38 307.3 17.8 180 258-466 179-359 (551)
12 TIGR00468 pheS phenylalanyl-tR 100.0 6.5E-31 1.4E-35 264.8 19.6 189 2-244 73-272 (294)
13 PRK09616 pheT phenylalanyl-tRN 100.0 7.1E-31 1.5E-35 285.6 18.5 180 259-467 178-357 (552)
14 PRK06253 O-phosphoseryl-tRNA s 100.0 3.6E-29 7.8E-34 262.3 18.9 223 2-285 48-359 (529)
15 KOG2472|consensus 100.0 1.8E-29 3.9E-34 259.1 11.5 191 259-473 206-396 (578)
16 KOG2472|consensus 100.0 4.7E-28 1E-32 248.7 15.7 186 1-240 392-577 (578)
17 CHL00192 syfB phenylalanyl-tRN 100.0 9.5E-28 2.1E-32 267.2 16.2 160 273-462 199-391 (704)
18 PRK00629 pheT phenylalanyl-tRN 99.9 1.3E-27 2.7E-32 270.0 15.9 155 273-461 298-478 (791)
19 TIGR00472 pheT_bact phenylalan 99.9 2.9E-27 6.3E-32 267.4 15.9 162 273-468 302-489 (798)
20 PF01409 tRNA-synt_2d: tRNA sy 99.9 1.7E-26 3.8E-31 226.8 15.3 195 1-244 17-227 (247)
21 COG0072 PheT Phenylalanyl-tRNA 99.9 5.4E-26 1.2E-30 250.8 16.9 162 273-467 160-347 (650)
22 TIGR02367 PylS pyrrolysyl-tRNA 99.9 5.3E-23 1.2E-27 213.0 17.8 185 2-244 241-430 (453)
23 PRK09537 pylS pyrolysyl-tRNA s 99.9 1.5E-22 3.2E-27 210.2 18.2 185 2-244 205-394 (417)
24 cd00768 class_II_aaRS-like_cor 99.9 9.5E-23 2.1E-27 193.6 14.1 176 4-227 3-188 (211)
25 PRK04172 pheS phenylalanyl-tRN 99.9 1.8E-21 4E-26 209.2 19.3 193 2-244 234-468 (489)
26 TIGR00470 sepS O-phosphoseryl- 99.8 5E-20 1.1E-24 190.6 17.3 195 2-244 48-331 (533)
27 PLN02788 phenylalanine-tRNA sy 99.8 1.9E-19 4.1E-24 186.5 16.9 233 2-285 69-323 (402)
28 PF03484 B5: tRNA synthetase B 99.8 4.9E-20 1.1E-24 146.9 7.4 70 359-452 1-70 (70)
29 PRK00488 pheS phenylalanyl-tRN 99.8 5.1E-18 1.1E-22 172.2 19.1 189 2-244 109-319 (339)
30 smart00874 B5 tRNA synthetase 99.8 7.9E-19 1.7E-23 140.1 8.3 70 360-452 2-71 (71)
31 PLN02853 Probable phenylalanyl 99.5 2.1E-13 4.6E-18 144.1 19.3 196 1-244 221-463 (492)
32 PTZ00326 phenylalanyl-tRNA syn 99.5 4.5E-13 9.7E-18 142.3 19.1 196 1-244 229-478 (494)
33 TIGR00469 pheS_mito phenylalan 99.5 1.5E-13 3.3E-18 143.9 14.7 272 2-285 43-376 (460)
34 COG0016 PheS Phenylalanyl-tRNA 99.5 4E-13 8.7E-18 136.0 17.2 193 2-244 112-316 (335)
35 COG2024 Phenylalanyl-tRNA synt 99.2 3E-11 6.5E-16 121.7 8.0 193 2-243 48-338 (536)
36 KOG2784|consensus 98.7 1.7E-07 3.7E-12 94.6 11.5 188 2-237 213-445 (483)
37 PF03483 B3_4: B3/4 domain; I 98.5 1.4E-07 3.1E-12 88.3 5.8 61 273-334 88-174 (174)
38 cd00773 HisRS-like_core Class 97.6 0.0042 9.1E-08 61.7 18.1 225 3-242 5-258 (261)
39 smart00873 B3_4 B3/4 domain. T 97.3 0.00048 1E-08 63.8 6.1 46 273-319 88-133 (174)
40 PRK00037 hisS histidyl-tRNA sy 97.3 0.0015 3.3E-08 69.1 10.5 129 3-135 21-154 (412)
41 PRK12421 ATP phosphoribosyltra 97.1 0.0077 1.7E-07 63.7 13.4 131 4-135 25-157 (392)
42 TIGR00442 hisS histidyl-tRNA s 97.1 0.0048 1E-07 65.1 11.6 131 3-135 17-153 (397)
43 cd00771 ThrRS_core Threonyl-tR 97.1 0.022 4.8E-07 57.9 16.1 206 4-227 34-255 (298)
44 PF00587 tRNA-synt_2b: tRNA sy 97.0 0.0021 4.6E-08 59.7 7.8 130 4-135 3-145 (173)
45 PF13393 tRNA-synt_His: Histid 97.0 0.0061 1.3E-07 61.9 11.2 128 4-134 14-144 (311)
46 PRK12292 hisZ ATP phosphoribos 96.9 0.011 2.3E-07 62.5 12.7 131 4-135 21-154 (391)
47 TIGR00443 hisZ_biosyn_reg ATP 96.8 0.014 3E-07 59.8 12.4 152 3-178 11-165 (314)
48 CHL00201 syh histidine-tRNA sy 96.7 0.017 3.6E-07 61.8 12.6 130 4-134 22-157 (430)
49 cd00670 Gly_His_Pro_Ser_Thr_tR 96.5 0.015 3.2E-07 56.3 9.8 110 4-114 6-124 (235)
50 PRK12420 histidyl-tRNA synthet 96.5 0.033 7.3E-07 59.3 13.2 131 4-135 22-155 (423)
51 PRK12293 hisZ ATP phosphoribos 96.4 0.046 1E-06 55.2 12.7 119 4-135 23-142 (281)
52 PLN02530 histidine-tRNA ligase 96.3 0.031 6.8E-07 60.7 11.2 130 4-135 88-220 (487)
53 PRK12295 hisZ ATP phosphoribos 96.0 0.14 3.1E-06 53.8 14.1 127 3-135 7-136 (373)
54 PLN02972 Histidyl-tRNA synthet 95.9 0.11 2.4E-06 58.9 13.5 127 4-135 345-474 (763)
55 PRK12444 threonyl-tRNA synthet 95.6 0.085 1.8E-06 59.3 11.4 186 4-206 278-473 (639)
56 COG0124 HisS Histidyl-tRNA syn 94.7 0.3 6.6E-06 52.1 11.6 131 4-135 22-157 (429)
57 TIGR00418 thrS threonyl-tRNA s 94.7 0.12 2.5E-06 57.2 8.9 130 4-135 204-344 (563)
58 PRK00413 thrS threonyl-tRNA sy 94.7 0.15 3.2E-06 57.3 9.8 130 4-135 274-414 (638)
59 PRK09194 prolyl-tRNA synthetas 94.7 0.25 5.5E-06 54.8 11.4 133 3-137 50-193 (565)
60 PRK12305 thrS threonyl-tRNA sy 94.7 0.088 1.9E-06 58.4 7.8 130 4-135 210-350 (575)
61 TIGR00409 proS_fam_II prolyl-t 94.5 0.38 8.2E-06 53.4 12.2 131 3-136 50-192 (568)
62 PLN02908 threonyl-tRNA synthet 94.3 0.41 8.9E-06 54.3 12.3 130 4-136 325-465 (686)
63 cd00772 ProRS_core Prolyl-tRNA 94.3 0.36 7.9E-06 48.2 10.6 132 3-135 35-182 (264)
64 cd00779 ProRS_core_prok Prolyl 94.2 0.12 2.6E-06 51.4 6.8 130 4-135 35-175 (255)
65 PLN02837 threonine-tRNA ligase 93.9 0.45 9.8E-06 53.3 11.4 205 4-227 251-473 (614)
66 cd00669 Asp_Lys_Asn_RS_core As 93.7 0.54 1.2E-05 47.2 10.5 108 5-127 6-113 (269)
67 PRK14799 thrS threonyl-tRNA sy 93.5 0.11 2.5E-06 57.1 5.7 91 4-97 172-265 (545)
68 cd00770 SerRS_core Seryl-tRNA 93.3 0.33 7.1E-06 49.4 8.3 127 4-135 56-196 (297)
69 PF00152 tRNA-synt_2: tRNA syn 92.0 1.1 2.5E-05 46.1 10.4 96 5-113 27-126 (335)
70 PRK12294 hisZ ATP phosphoribos 90.6 0.67 1.5E-05 46.6 6.8 88 3-94 10-97 (272)
71 cd00774 GlyRS-like_core Glycyl 90.4 1.1 2.3E-05 44.6 8.0 121 4-135 36-168 (254)
72 PRK06462 asparagine synthetase 89.7 1.4 3E-05 45.7 8.5 111 5-127 35-149 (335)
73 PRK00960 seryl-tRNA synthetase 89.7 3.3 7E-05 45.4 11.5 91 5-96 228-351 (517)
74 PRK12325 prolyl-tRNA synthetas 89.6 0.69 1.5E-05 49.7 6.3 90 3-94 50-142 (439)
75 PRK09350 poxB regulator PoxA; 89.6 2 4.3E-05 43.9 9.4 79 5-95 10-92 (306)
76 PRK03991 threonyl-tRNA synthet 88.7 10 0.00023 42.5 15.0 157 4-178 231-401 (613)
77 cd00778 ProRS_core_arch_euk Pr 88.5 0.55 1.2E-05 46.8 4.3 92 4-95 36-133 (261)
78 KOG2783|consensus 88.4 1.7 3.7E-05 45.3 7.7 77 162-243 228-309 (436)
79 cd00775 LysRS_core Lys_tRNA sy 87.6 3.9 8.5E-05 42.2 10.0 107 5-127 13-120 (329)
80 TIGR00414 serS seryl-tRNA synt 86.8 3.5 7.5E-05 44.1 9.4 127 5-136 178-318 (418)
81 TIGR00415 serS_MJ seryl-tRNA s 86.4 13 0.00028 40.7 13.4 139 16-200 240-413 (520)
82 PRK00484 lysS lysyl-tRNA synth 86.3 5 0.00011 43.9 10.4 107 5-128 177-285 (491)
83 PTZ00417 lysine-tRNA ligase; P 85.6 4.7 0.0001 44.9 9.9 108 5-128 258-366 (585)
84 cd00777 AspRS_core Asp tRNA sy 85.5 7 0.00015 39.4 10.4 107 5-127 6-113 (280)
85 TIGR00499 lysS_bact lysyl-tRNA 84.5 3.5 7.6E-05 45.1 8.2 105 5-127 177-284 (496)
86 TIGR00408 proS_fam_I prolyl-tR 84.4 1.3 2.8E-05 48.1 4.9 91 4-95 42-139 (472)
87 PTZ00385 lysyl-tRNA synthetase 84.4 5.6 0.00012 44.8 9.9 112 5-132 238-350 (659)
88 PLN02502 lysyl-tRNA synthetase 83.9 6.6 0.00014 43.5 10.0 78 5-96 234-312 (553)
89 PRK03932 asnC asparaginyl-tRNA 83.1 7.4 0.00016 42.0 9.9 109 5-129 138-254 (450)
90 PRK08661 prolyl-tRNA synthetas 83.1 1.9 4E-05 46.9 5.4 92 4-95 48-145 (477)
91 PRK05431 seryl-tRNA synthetase 82.3 7.2 0.00016 41.8 9.4 127 5-136 175-316 (425)
92 PRK12445 lysyl-tRNA synthetase 82.2 7.1 0.00015 42.8 9.4 108 5-129 189-298 (505)
93 COG3382 Solo B3/4 domain (OB-f 82.0 4.1 8.8E-05 39.8 6.6 64 273-336 153-219 (229)
94 cd00776 AsxRS_core Asx tRNA sy 81.9 7.1 0.00015 40.2 8.9 105 5-126 29-134 (322)
95 COG1190 LysU Lysyl-tRNA synthe 81.0 4.4 9.6E-05 43.8 7.1 79 5-96 185-263 (502)
96 TIGR00462 genX lysyl-tRNA synt 80.4 3.6 7.8E-05 42.0 6.1 80 5-96 6-88 (304)
97 PLN02678 seryl-tRNA synthetase 79.9 14 0.0003 39.9 10.5 85 5-96 179-270 (448)
98 PLN02850 aspartate-tRNA ligase 79.2 8.2 0.00018 42.6 8.7 76 5-95 230-305 (530)
99 PRK12820 bifunctional aspartyl 76.4 14 0.00031 42.0 9.7 111 5-130 161-271 (706)
100 TIGR00458 aspS_arch aspartyl-t 74.4 15 0.00033 39.3 9.0 94 5-113 138-232 (428)
101 PRK02983 lysS lysyl-tRNA synth 74.3 17 0.00037 43.6 10.2 78 5-96 775-853 (1094)
102 TIGR00459 aspS_bact aspartyl-t 72.5 24 0.00053 39.4 10.2 111 5-130 143-253 (583)
103 PRK05159 aspC aspartyl-tRNA sy 72.4 19 0.00042 38.7 9.2 93 5-112 141-234 (437)
104 PTZ00401 aspartyl-tRNA synthet 68.7 19 0.00042 39.9 8.3 77 5-96 218-294 (550)
105 PLN02320 seryl-tRNA synthetase 67.3 45 0.00097 36.6 10.6 86 5-96 238-328 (502)
106 TIGR00457 asnS asparaginyl-tRN 67.1 33 0.00072 37.1 9.6 108 5-128 141-256 (453)
107 PRK00476 aspS aspartyl-tRNA sy 66.5 36 0.00077 38.2 9.9 110 5-130 146-256 (588)
108 PLN02903 aminoacyl-tRNA ligase 63.6 43 0.00093 37.9 9.8 111 5-130 208-319 (652)
109 PRK04173 glycyl-tRNA synthetas 61.3 17 0.00038 39.3 6.2 92 4-96 42-201 (456)
110 PF09840 DUF2067: Uncharacteri 60.5 68 0.0015 30.6 9.3 103 298-451 28-130 (190)
111 TIGR02367 PylS pyrrolysyl-tRNA 60.0 3.6 7.9E-05 44.1 0.7 27 446-472 209-243 (453)
112 COG3705 HisZ ATP phosphoribosy 56.5 36 0.00077 36.1 7.3 106 4-113 21-127 (390)
113 KOG1936|consensus 55.5 68 0.0015 34.4 9.0 150 5-180 79-233 (518)
114 COG0441 ThrS Threonyl-tRNA syn 53.5 18 0.00039 40.4 4.8 91 4-98 224-318 (589)
115 PLN02221 asparaginyl-tRNA synt 44.0 1.4E+02 0.003 33.4 9.8 27 5-31 176-202 (572)
116 PF11734 TilS_C: TilS substrat 42.0 24 0.00052 28.0 2.6 35 273-308 38-72 (74)
117 KOG0556|consensus 39.4 66 0.0014 34.3 5.9 76 6-96 234-309 (533)
118 COG0172 SerS Seryl-tRNA synthe 34.6 4.3E+02 0.0094 28.5 11.3 77 12-97 186-269 (429)
119 PF09409 PUB: PUB domain; Int 31.9 76 0.0017 25.8 4.2 57 357-442 27-83 (87)
120 PF13592 HTH_33: Winged helix- 30.6 46 0.00099 25.3 2.4 19 399-417 21-39 (60)
121 COG2269 Truncated, possibly in 28.5 1.6E+02 0.0034 30.1 6.3 83 5-97 21-105 (322)
122 PF00325 Crp: Bacterial regula 23.8 1E+02 0.0022 20.7 2.9 27 362-413 1-27 (32)
123 PF11324 DUF3126: Protein of u 23.1 3.1E+02 0.0067 21.5 5.7 18 197-214 26-43 (63)
No 1
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=100.00 E-value=8.4e-42 Score=325.58 Aligned_cols=196 Identities=33% Similarity=0.571 Sum_probs=162.9
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LP 81 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~ 81 (485)
.+.+++++|+.|+++||+|++||||++++.. +.++.+ ....|+|.||+|+|+++||+||+||||+++++|++++ .+
T Consensus 2 ~~~~~~~ir~~L~~~G~~E~~tys~~~~~~~-~~~~~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~ 78 (198)
T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEA-ELFDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKP 78 (198)
T ss_pred chHHHHHHHHHHHHCCCceeecccCCCHHHH-HhccCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4678999999999999999999999999764 555332 2357999999999999999999999999999999875 79
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCH
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGF 161 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 161 (485)
++|||||+||.++.. .+.|+.+++++++|.... ..|... .++.||
T Consensus 79 ~~lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~----------------------~~w~~~----------~~~~~f 123 (198)
T cd00769 79 LRLFEIGRVFLKDED---GPEEEEHLAALLSGNREP----------------------ESWQGK----------GRPVDF 123 (198)
T ss_pred EeEEEeEeEEecCCC---CCcchheEEEEEECCCcc----------------------ccccCC----------CCccCH
Confidence 999999999976431 235778999999996421 234321 344799
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccccc
Q psy15928 162 EIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240 (485)
Q Consensus 162 ~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L 240 (485)
+++||+++.++..+|+.. .+...+...++|||||+|+|+++|+.+|++|+|||+++++|||+.|+++|||||+.|
T Consensus 124 ~~~Kg~ve~ll~~l~~~~----~~~~~~~~~~~~hpg~~a~I~~~g~~vG~~G~lhP~v~~~~~l~~~v~~~Ei~l~~l 198 (198)
T cd00769 124 YDAKGILEALLRALGIIV----EFELEELDADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198 (198)
T ss_pred hhHHHHHHHHHHHcCCeE----EEEecCCCCCccCCCceEEEEECCEEEEEEEeeCHHHHHHcCCCCceEEEEEecccC
Confidence 999999999999998731 133333556779999999999999999999999999999999999999999999865
No 2
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=5e-40 Score=365.25 Aligned_cols=218 Identities=22% Similarity=0.437 Sum_probs=176.3
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-C
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-L 80 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~ 80 (485)
+.+++++++|+.|+++||+|++||||++++. + . ...|+|+||+|+|+++||+||+||||+++++|++|+ .
T Consensus 399 ~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~----~--~---~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~ 469 (704)
T CHL00192 399 IDYNTRDKIRSYLRNLGLTELIHYSLVKQES----F--S---KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNS 469 (704)
T ss_pred HHHHHHHHHHHHHHhCCCceEecccccChhh----c--C---CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999999999999999863 1 1 146999999999999999999999999999999875 7
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
++||||+|+||.+++.. ..|+.+++++++|.... ...|+.. .+..|
T Consensus 470 ~~rlFEiG~Vf~~~~~~---~~e~~~la~~~~g~~~~---------------------~~~w~~~----------~~~~d 515 (704)
T CHL00192 470 TLEGFEIGHVFNLDSSS---IIEETELAGGIFGGIDI---------------------RSSWSEK----------AQSLN 515 (704)
T ss_pred CEeEEEeeeeEcCCCcc---ccccceEEEEEECCCcC---------------------ccccCCC----------CCccC
Confidence 99999999999764321 24677999999996310 0234332 34579
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEee----CCCCCccCCceEEEEE-CCEEEEEEEeeCHHHHHhCCCCCCEEEEEe
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQA----ADNATFFPQRCANVML-RGSKIGTMGVLHPEVLGKFELTLPCSILEI 235 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~----~~~~~~hpgrsa~I~~-~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei 235 (485)
||++||++++++..+|+. +.+.+ ..+++|||||+|.|++ +|+.||++|+|||+++++|||+.|+|+|||
T Consensus 516 F~d~Kg~le~ll~~l~i~------~~~~~~~~~~~~~~~hPgrsA~I~~~~g~~iG~iG~lhP~v~~~~~l~~~v~~~Ei 589 (704)
T CHL00192 516 WFEAKGIIENFFQKLNLP------IYWKKYSDLDEKINFHPYCTSEIFLSNGQKIGIFGQLHPLLANKLNLNTEIYLFEI 589 (704)
T ss_pred HHHHHHHHHHHHHHCCCc------EEEEeccccccCcCCCCCcEEEEEEECCcEEEEEEEECHHHHHHcCCCCCeEEEEE
Confidence 999999999999999975 45655 3567899999999999 789999999999999999999999999999
Q ss_pred ccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcc
Q psy15928 236 NIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 236 ~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
||+.|..... .....+|.++ |+||.+.+|-..+
T Consensus 590 ~l~~l~~~~~-------------~~~~~~~~~~----skfP~v~RDia~v 622 (704)
T CHL00192 590 NLDILQYSIQ-------------QNNLISYQPY----SSYPKIIRDLSFI 622 (704)
T ss_pred EHHHhhhhhc-------------cccccccCCC----CCCCCccceEEEE
Confidence 9999865321 1111245555 9999888776643
No 3
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=6.5e-40 Score=369.45 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=179.8
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-C
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-L 80 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~ 80 (485)
+.+.+.+++|+.|+++||+|++||||++++.. ..|+.+ . ..++|.||+|+|+++||+||+||||+++++|++|+ .
T Consensus 488 ~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~-~~~~~~--~-~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~ 563 (791)
T PRK00629 488 EAQRLLRRLRRALAALGYQEVITYSFVSPEDA-KLFGLN--P-EPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNK 563 (791)
T ss_pred HHHHHHHHHHHHHHHCCCcEEeccccCCHHHH-HhcCCC--C-CeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCC
Confidence 45778999999999999999999999999874 556543 2 46999999999999999999999999999999884 6
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+++|||+|+||.++.. ...|..+||++++|.... ..|.. .++.|
T Consensus 564 ~i~lFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~----------------------~~w~~-----------~~~~d 607 (791)
T PRK00629 564 DVALFEIGRVFLPDGD---LPREPEHLAGVLTGNRVE----------------------ESWGG-----------KRPVD 607 (791)
T ss_pred CEeEEeeeeeeCCCCC---CCcchhEEEEEEECCCcc----------------------ccccc-----------cCCCC
Confidence 8999999999976421 235778999999995311 22322 13479
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEee-CCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEecccc
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQA-ADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEP 239 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~-~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~ 239 (485)
||++||++++++..+|+. .+++.+ ..+++|||||+|.|+++|+.+|++|+|||+++++|||+.++|+|||||+.
T Consensus 608 f~~~Kg~le~ll~~l~~~-----~~~~~~~~~~~~~hPg~sA~I~~~g~~iG~iG~lhP~v~~~~~l~~~v~~~Ei~l~~ 682 (791)
T PRK00629 608 FFDLKGDVEALLEALGLP-----EVEFVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKVLKKLDLPGRTYVFELDLDA 682 (791)
T ss_pred HHHHHHHHHHHHHHcCCC-----ceeEeecCCCcCcCCceEEEEEECCEEEEEEEEECHHHHHHcCCCCCEEEEEEEHHH
Confidence 999999999999999885 256666 66788999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcccccccccccccccccccCCCCCceeecCCCc
Q psy15928 240 FNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGV 284 (485)
Q Consensus 240 L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ 284 (485)
|.... ....+|.++ |+||.+++|-..
T Consensus 683 l~~~~---------------~~~~~~~~~----skfP~v~RDls~ 708 (791)
T PRK00629 683 LLEAA---------------RKLPKYKPI----SKFPAVRRDLAL 708 (791)
T ss_pred hhhhh---------------cccCCCCCC----CCCCCccccEEE
Confidence 86431 111245555 999988887664
No 4
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-40 Score=360.77 Aligned_cols=217 Identities=30% Similarity=0.554 Sum_probs=181.2
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-C
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-L 80 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~ 80 (485)
+.+.+.|++|+.|+++||+|++||+|+|++.. ..++...+ ..++|+||+|+|+++||+||+||||+++++|++|+ .
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~-~~~~~~~~--~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~ 428 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEA-KLFGLEND--EALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNP 428 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHH-HHhccCCC--cceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 56788999999999999999999999999975 56654322 27999999999999999999999999999999986 4
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+++|||||+||..++.. ..+..+++++++|... ..+|.. .+++|
T Consensus 429 ~~~iFEiG~v~~~~~~~---~~~~~~~~~l~~g~~~----------------------~~~w~~-----------~~~v~ 472 (650)
T COG0072 429 DVRIFEIGDVFVKDEEA---ERETRHLAGLAAGLAG----------------------EESWQG-----------KRPVD 472 (650)
T ss_pred CeeEEEeeeeEecCCcc---cchhHHHHHHhhcccc----------------------cccccc-----------CCCcC
Confidence 69999999999986542 3445577777777531 144533 25689
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccccc
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L 240 (485)
|+++||+|++++..+|+. +++.+.++++|||||||.|+++++.||++|+|||+++++|||+.++|+||||++.+
T Consensus 473 f~d~Kg~ve~ll~~lg~~------~~~~~~~~~~~hpgrsA~I~~~~~~iG~iGeiHP~vl~~~dl~~~~~~fEi~l~~l 546 (650)
T COG0072 473 FYDAKGDLEALLEALGVE------YEFEPAEHPAFHPGRSAAIYLNKEVIGFIGELHPEVLKEFDLPGPVYVFEIDLDAL 546 (650)
T ss_pred HHHHHHHHHHHHHHhCCc------eEEEEccCCCccCCceEEEEECCEEEEEEeeeCHHHHHhcCCCCCeEEEEEehhhh
Confidence 999999999999999974 78888888899999999999998799999999999999999999999999998888
Q ss_pred cccccccCCCCcccccccccccccccccccCCCCCceeecCCCc
Q psy15928 241 NFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGV 284 (485)
Q Consensus 241 ~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ 284 (485)
.... ...|.++ |+||.+++|-..
T Consensus 547 ~~~~-----------------~~~~~~~----s~~pa~~RDia~ 569 (650)
T COG0072 547 LKRK-----------------KPAYKPI----SKFPAVRRDIAL 569 (650)
T ss_pred cccc-----------------ccccCCC----CCCCcccceeEE
Confidence 6542 2334444 999988887654
No 5
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=1.1e-38 Score=360.17 Aligned_cols=221 Identities=27% Similarity=0.443 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~~ 82 (485)
+..++++|+.|+++||+|++||+|+|++.. ..++++.. ...|+|+||+|+|+++||+||+||||+++++|+++ ..++
T Consensus 494 ~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~-~~~~~~~~-~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~ 571 (798)
T TIGR00472 494 YLLLRKLRTLLVGLGLNEVITYSLVSSEKA-EKFNFPKL-ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDV 571 (798)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCHHHH-HhhcCCCC-CceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCE
Confidence 344589999999999999999999999764 56655421 12699999999999999999999999999999987 5689
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHH
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFE 162 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 162 (485)
+|||+|+||.+++.. +.|+.+||++++|.... ..|... .++.|||
T Consensus 572 ~lFEiG~V~~~~~~~---~~e~~~La~~~~g~~~~----------------------~~~~~~----------~~~~df~ 616 (798)
T TIGR00472 572 KIFEIGKVFAKDGLG---VKEQLRLAILISGEKNP----------------------SSWNHK----------EEKVDFY 616 (798)
T ss_pred eEEeeecccCCCCCC---cchhhEEEEEEECCCCc----------------------ccccCC----------CCcCChH
Confidence 999999999653311 45778999999996421 234321 3447999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEee-CCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEecccccc
Q psy15928 163 IIHGLLDRVMQLLQIPLDKTEGYCIQA-ADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFN 241 (485)
Q Consensus 163 ~lKg~ve~ll~~lgi~~~~~~~~~~~~-~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L~ 241 (485)
++||++++++..+|+.. .+.+.+ ..+++|||||+|.|+++|+.+|++|+|||+++++|+|+.|+|+|||||+.|.
T Consensus 617 d~Kg~le~ll~~l~~~~----~~~~~~~~~~~~~hpg~sA~I~~~~~~iG~iG~lhP~v~~~~~l~~~v~~~Ei~l~~l~ 692 (798)
T TIGR00472 617 DLKGDVESLLELLGLSD----DVYFKNTAENEELHPGQSATIYLKGKKIGFIGELHPEIAKKYDLKEPTFVAELDLDRLL 692 (798)
T ss_pred HHHHHHHHHHHHcCCCc----ceEEeecCCCCCCCCCcEEEEEECCEEEEEEEEECHHHHHHcCCCCCeEEEEEEHHHHh
Confidence 99999999999998752 134444 5557799999999999999999999999999999999999999999999886
Q ss_pred ccccccCCCCcccccccccccccccccccCCCCCceeecCCCc
Q psy15928 242 FAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGV 284 (485)
Q Consensus 242 ~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ 284 (485)
.... ...+|.++ |+||.+++|-..
T Consensus 693 ~~~~---------------~~~~~~~~----sk~P~~~RDls~ 716 (798)
T TIGR00472 693 ESLK---------------KVPKYRPI----SKFPAVTRDISF 716 (798)
T ss_pred hhhc---------------ccCCcCCC----CCCCCcceeEEE
Confidence 4321 01235555 999988887654
No 6
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=2.9e-37 Score=337.54 Aligned_cols=196 Identities=48% Similarity=0.925 Sum_probs=165.4
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
|.+++.+++|+.|+++||+|++||+|+|+++.++.++.+.+....|+|+||+|+|+++||+||+||||+++++|++++.+
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 67889999999999999999999999999763466665422224799999999999999999999999999999988669
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCH
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGF 161 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 161 (485)
+||||||+||.++.....+..++++||++++|+. .+|
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~-------------------------------------------~~f 514 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTT-------------------------------------------SGF 514 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCC-------------------------------------------CCH
Confidence 9999999999875432233367889999999853 468
Q ss_pred HHHHHHHHHHHHHhCCCCC---CCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccc
Q psy15928 162 EIIHGLLDRVMQLLQIPLD---KTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIE 238 (485)
Q Consensus 162 ~~lKg~ve~ll~~lgi~~~---~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld 238 (485)
+++||++++++..+|+... ....|.+.+..++.|||||+|.|+++|+.||++|+|||+++++|||+.|+++|||||+
T Consensus 515 ~~ikg~le~ll~~l~i~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~iGelhP~vl~~f~l~~pv~~~Eidl~ 594 (597)
T PLN02265 515 EVIHGLVDRIMEVLGIPFVEIGDNNGYYVEPSNEPEYFPGRQASIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLE 594 (597)
T ss_pred hhHHHHHHHHHHHcCCcccccccCceEEEeecCCccccCCceEEEEECCeEEEEEEEECHHHHHHCCCCCceEEEEEEhH
Confidence 8999999999999988510 0001555777788899999999999999999999999999999999999999999998
Q ss_pred cc
Q psy15928 239 PF 240 (485)
Q Consensus 239 ~L 240 (485)
.|
T Consensus 595 ~l 596 (597)
T PLN02265 595 PL 596 (597)
T ss_pred Hh
Confidence 76
No 7
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=6.2e-37 Score=333.02 Aligned_cols=191 Identities=34% Similarity=0.628 Sum_probs=165.1
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
+.+++++++|+.|+++||+|++||||+++++.++.++++.+ ...|+|.||+|+|+++||+||+||||+++++|++++.+
T Consensus 360 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~-~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~ 438 (552)
T PRK09616 360 PIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPE-EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYP 438 (552)
T ss_pred hHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCC-CCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCC
Confidence 56889999999999999999999999999762366665421 13699999999999999999999999999999955668
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCH
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGF 161 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 161 (485)
+|+||||+||.+++.+...+.|.++++++++|+. .||
T Consensus 439 ~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~-------------------------------------------~df 475 (552)
T PRK09616 439 QKIFEIGDVVLIDESTETGTRTERKLAAAIAHSE-------------------------------------------ASF 475 (552)
T ss_pred eeEEEeeEEEecCCccccCcchhhEEEEEEECCC-------------------------------------------CCH
Confidence 9999999999875422223457889999999852 479
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEecccccc
Q psy15928 162 EIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFN 241 (485)
Q Consensus 162 ~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L~ 241 (485)
|++||+++.++..+|+. +.|.+..+++|||||+|.|+++|+.||++|+|||+++++|||+.++|+|||||+.|.
T Consensus 476 ~dlKg~ve~ll~~lgi~------~~~~~~~~~~~hPg~sa~I~~~g~~iG~iG~lhP~v~~~~~i~~~v~~~Eidl~~l~ 549 (552)
T PRK09616 476 TEIKSVVQALLRELGIE------YEVEESEHPSFIPGRCADILVNGKKIGVIGEIHPEVLENFGIEVPVVAFEIDLEALL 549 (552)
T ss_pred HHHHHHHHHHHHHcCCe------EEEecCCCCcccCCceEEEEECCEEEEEEEEECHHHHHhcCCCCceEEEEEEHHHhh
Confidence 99999999999999974 567777778899999999999999999999999999999999999999999999886
Q ss_pred c
Q psy15928 242 F 242 (485)
Q Consensus 242 ~ 242 (485)
.
T Consensus 550 ~ 550 (552)
T PRK09616 550 K 550 (552)
T ss_pred c
Confidence 3
No 8
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=1.6e-36 Score=329.51 Aligned_cols=186 Identities=41% Similarity=0.690 Sum_probs=160.6
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
+.+++++++|+.|+++||+|++||||+|+++.++.++++ ....|+|.||+|+|+++||+||+||||+++++|++++.+
T Consensus 363 ~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~ 440 (551)
T TIGR00471 363 PLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIE--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELP 440 (551)
T ss_pred hHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccC--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCC
Confidence 567899999999999999999999999997643566653 224699999999999999999999999999999955678
Q ss_pred eeEEEeCcEEecCCccccccccc--eEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQ--RNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~--~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
+||||||+||.++++.. ..++ .+++++++|+. .
T Consensus 441 ~~lFEiG~Vf~~~~~~~--~~e~~~~~l~~~~~g~~-------------------------------------------~ 475 (551)
T TIGR00471 441 QKIFEIGDVVVKDDKSE--TRSRVVTKLAVGITHSE-------------------------------------------A 475 (551)
T ss_pred eeEEEEEEEEEcCCccc--cccceeeEEEEEEECCC-------------------------------------------C
Confidence 99999999997643211 1234 78999998842 4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEecccc
Q psy15928 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEP 239 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~ 239 (485)
|||++||++++++..+|+. +.+.+..+++|||||+|.|+++|+.+|++|+|||+++++|||+.|+++|||||+.
T Consensus 476 df~d~Kg~ve~ll~~l~i~------~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~ihP~v~~~~~i~~~v~~~Ei~l~~ 549 (551)
T TIGR00471 476 NFNEIKSIVAALARELGIE------YEIEESEHPSFIPGRGAKIVFEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIEV 549 (551)
T ss_pred CHHHHHHHHHHHHHHcCCc------eEEeecCCCccCCCceEEEEECCcEEEEEEEECHHHHHhCCCCCceEEEEEEehh
Confidence 7999999999999999874 5677777788999999999999999999999999999999999999999999997
Q ss_pred c
Q psy15928 240 F 240 (485)
Q Consensus 240 L 240 (485)
|
T Consensus 550 l 550 (551)
T TIGR00471 550 F 550 (551)
T ss_pred c
Confidence 6
No 9
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=4e-36 Score=328.60 Aligned_cols=189 Identities=55% Similarity=0.898 Sum_probs=170.1
Q ss_pred ccccccccccccCCCCCceeecCCCcccccCccccCcccceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCcce
Q psy15928 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYH 338 (485)
Q Consensus 259 ~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~~~ 338 (485)
+.+..+|.+++++.+.||+|+|++++|+|+||||||++|+|+++|||||||+|++|+..+..++++++.+|.++|++++.
T Consensus 209 ~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslagIing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~ 288 (597)
T PLN02265 209 DMKLKKFLHIIENSPVFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFE 288 (597)
T ss_pred CcccccccccccCCCCceEEEeCCCCEEEeCCeeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCce
Confidence 45678999999999999999999997799999999999999999999999999999999999999999999999998877
Q ss_pred eeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEE
Q psy15928 339 VESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKI 418 (485)
Q Consensus 339 ~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~ 418 (485)
++++.+.++.|....+|.+.++.+.++.++|+++||+ +|+.++|.++|++|||++..
T Consensus 289 i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~~~lG~-----------------------~l~~~ei~~iL~~l~~~~~~ 345 (597)
T PLN02265 289 VEPVEVVYPDGKSTVYPDLSVRTMEVDLSYINSSIGV-----------------------SLDAEEVASLLNKMQLQAEQ 345 (597)
T ss_pred EEEEEEEccCCceEeccCCcCceEEeeHHHHHHHhCC-----------------------CCCHHHHHHHHHHCCCCeEe
Confidence 8887777777777778887778999999999999999 99999999999999999864
Q ss_pred ec-CCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCcccccccce
Q psy15928 419 LG-SGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLF 470 (485)
Q Consensus 419 ~~-~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~~~~ 470 (485)
.+ +++.|.|+||+||+||.|++||||||||+|||||||+++|...+.|+..+
T Consensus 346 ~~~~~~~~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~~ 398 (597)
T PLN02265 346 SSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQP 398 (597)
T ss_pred cccCCCceEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCCH
Confidence 21 23459999999999999999999999999999999999997656565543
No 10
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=100.00 E-value=1.7e-35 Score=286.36 Aligned_cols=190 Identities=20% Similarity=0.214 Sum_probs=158.6
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHHHHHHHHHh
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 75 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N 75 (485)
.|++++++++|+.|+++||+|++||+|++++...+.++.+.+. ...++|.||+ +++||+||+||||+++++|
T Consensus 1 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~~l~~N 77 (218)
T cd00496 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---RLLLRTHTSAVQARALAKL 77 (218)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc---eEEEeccCcHHHHHHHHhc
Confidence 3789999999999999999999999999984223666543211 0358999999 9999999999999999999
Q ss_pred cCCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhc
Q psy15928 76 KKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYY 155 (485)
Q Consensus 76 ~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (485)
+.++|+||||+||+++..+..+..|.++++++++|..
T Consensus 78 ---~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~---------------------------------------- 114 (218)
T cd00496 78 ---KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKG---------------------------------------- 114 (218)
T ss_pred ---CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCC----------------------------------------
Confidence 5579999999999875421111237889999998742
Q ss_pred CCCCCHHHHHHHHHHHHHHhC--CCCCCCCceEEeeCCCCCccCCceEEEEECC----EEEEEEEeeCHHHHHhCCC--C
Q psy15928 156 NKSPGFEIIHGLLDRVMQLLQ--IPLDKTEGYCIQAADNATFFPQRCANVMLRG----SKIGTMGVLHPEVLGKFEL--T 227 (485)
Q Consensus 156 ~~~~~f~~lKg~ve~ll~~lg--i~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g----~~iG~iG~lhP~vl~~~di--~ 227 (485)
.||+++||+++.++..+| +. .+.+.+..++++||+++|.|+++| +.||++|+|||+++++||| +
T Consensus 115 ---~df~dlkg~ve~ll~~l~~~~~-----~~~~~~~~~~~~hp~~sa~i~~~g~~~~~~iG~~G~lhP~vl~~~~i~~~ 186 (218)
T cd00496 115 ---LTFADLKGTLEEFAKELFGPIT-----KVRFRPSYFPFTEPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGIDEE 186 (218)
T ss_pred ---CCHHHHHHHHHHHHHHhcCCCc-----eeEecCCcCCCCCCcEEEEEEeCCCCCeEEEEecccccHHHHHHCCCCCC
Confidence 479999999999999998 43 256666667888999999999999 8999999999999999999 9
Q ss_pred CCEEEEEeccccccccc
Q psy15928 228 LPCSILEINIEPFNFAK 244 (485)
Q Consensus 228 ~~v~~~Ei~ld~L~~~~ 244 (485)
.++++||||+++|.+.+
T Consensus 187 ~~v~~~Eidl~~l~~~~ 203 (218)
T cd00496 187 YSGFAFGIGLERLAMLK 203 (218)
T ss_pred ceEEEEEecHHHHHHHH
Confidence 99999999999997653
No 11
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=1.1e-33 Score=307.27 Aligned_cols=180 Identities=41% Similarity=0.622 Sum_probs=153.8
Q ss_pred cccccccccccccCCCCCceeecC-CCcccccCccccCcccceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCc
Q psy15928 258 THSQLKQYLPIIRDSPVYPVITDQ-NGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDK 336 (485)
Q Consensus 258 ~~~~~~~Y~~l~~~~~~~p~i~D~-~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~ 336 (485)
+|+++.+|.++.+..+++|+|+|+ ++ ++|+||||||.+|+|+++||+||||+||+||..+..++++++.|+.++++++
T Consensus 179 ~~~~~~~y~~l~~~~~~~~vI~D~~~~-~lslaGImgg~~s~V~~~T~nIllE~Ag~D~~~~~~al~~a~~li~~~~~g~ 257 (551)
T TIGR00471 179 EHPKGIRYAHIIEDSDKFPLILDSKDD-VLSMPPIINSELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGR 257 (551)
T ss_pred hCcccchhhhhhcCCCceeEEEeCCCC-EEeeCCccCCCceEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 477899999999999999999998 55 5899999999999999999999999999999999999999999999999875
Q ss_pred ceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEE
Q psy15928 337 YHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQT 416 (485)
Q Consensus 337 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~ 416 (485)
+.. ..+... +.....|....+.+.++.++|+++||. +++.++|.++|++|||++
T Consensus 258 ~~~--~~v~~~-~~~~~~p~~~~~~i~~~~~~i~~~lG~-----------------------~l~~~ei~~iL~~Lg~~v 311 (551)
T TIGR00471 258 ITV--VEVERP-DEHLGQPNLAPRFMEVSVEYINSLLGL-----------------------NLSADEIAHSLKKMRLDA 311 (551)
T ss_pred eeE--EEEEEC-CCcccCCCCccceEEecHHHHHHHhCC-----------------------CCCHHHHHHHHHHhCCCe
Confidence 422 222211 111223334567899999999999999 999999999999999999
Q ss_pred EEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCccccc
Q psy15928 417 KILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA 466 (485)
Q Consensus 417 ~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~ 466 (485)
.. .++.|.|+||+||+||.+++||||||||+|||||||+++|...+.+
T Consensus 312 ~~--~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGyd~I~~~~p~~~~~~ 359 (551)
T TIGR00471 312 VQ--SDEKLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIG 359 (551)
T ss_pred Ee--cCCcEEEEcCCCccccCchhHHHHHHHHHhCcccCCccCCCccccC
Confidence 65 3446999999999999999999999999999999999888653333
No 12
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.97 E-value=6.5e-31 Score=264.84 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=157.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 76 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~ 76 (485)
|.+++.+++|+.|+++||+|++||+|+++.+.++.++.+.++ .+.+.|. |+++|||||+|+||+++++|.
T Consensus 73 p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~-----d~~vLRtsl~p~ll~~l~~N~ 147 (294)
T TIGR00468 73 PLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK-----DRLLLRTHTTAVQLRTMEENE 147 (294)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec-----CCcceecccHHHHHHHHHhcC
Confidence 688999999999999999999999999985445777765321 1234553 899999999999999999998
Q ss_pred CCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcC
Q psy15928 77 KMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYN 156 (485)
Q Consensus 77 ~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (485)
+ .++|+||+|+||+++..+..+..|.+++++++.++
T Consensus 148 ~--~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~------------------------------------------ 183 (294)
T TIGR00468 148 K--PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDK------------------------------------------ 183 (294)
T ss_pred C--CCceEEEecceEEcCCCCCccCChhhEEEEEEECC------------------------------------------
Confidence 7 68999999999987642222223677888876642
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEE-CCE---EEEEEEeeCHHHHHhCCCCC--CE
Q psy15928 157 KSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVML-RGS---KIGTMGVLHPEVLGKFELTL--PC 230 (485)
Q Consensus 157 ~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~-~g~---~iG~iG~lhP~vl~~~di~~--~v 230 (485)
..||+++||+++.++..+++.. +++|++...|++||+++|.|++ +|+ .||++|+|||++++++||+. ++
T Consensus 184 -~~~f~dLKg~le~ll~~l~~~~----~~~~~~~~~p~~~Ps~e~~i~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~~~~v 258 (294)
T TIGR00468 184 -NVSFTNLKGFLEEFLKKMFGET----EIRFRPSYFPFTEPSAEIDVYCWEGKTWLEVLGAGMFRPEVLEPMGIDPTYPG 258 (294)
T ss_pred -CCCHHHHHHHHHHHHHHhCCCc----ceeeccCCCCCCCCCEEEEEEEeCCCccEEEEEeccCcHHHHHHCCCCCCCeE
Confidence 2579999999999999999852 3678888889899999999999 788 99999999999999999998 99
Q ss_pred EEEEeccccccccc
Q psy15928 231 SILEINIEPFNFAK 244 (485)
Q Consensus 231 ~~~Ei~ld~L~~~~ 244 (485)
|+|||++++|...+
T Consensus 259 ~afel~lerl~m~~ 272 (294)
T TIGR00468 259 FAWGIGIERLAMLK 272 (294)
T ss_pred EEEEeeHHHHHHHH
Confidence 99999999998764
No 13
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.97 E-value=7.1e-31 Score=285.63 Aligned_cols=180 Identities=38% Similarity=0.662 Sum_probs=150.9
Q ss_pred ccccccccccccCCCCCceeecCCCcccccCccccCcccceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCcce
Q psy15928 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYH 338 (485)
Q Consensus 259 ~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~~~ 338 (485)
+.++++|.++..+.+.+++|+|+++.++|+||||||++|+|+++||+||+|+||+|++.+..|+++++.++.+++ +.
T Consensus 178 ~~~~~~y~~L~~~~~~~~vI~D~~~~~lsl~gi~~~~~s~vt~~Tkni~lE~ag~d~~~~~~al~~~~~ll~~~~-g~-- 254 (552)
T PRK09616 178 HPKGKEYGHLLKDFDRYPLIVDSEGNVLSFPPIINSELTRVTEGTRNLFIDVTGTDLEAVLLALNIIATALAERG-GT-- 254 (552)
T ss_pred CcccceehhhccCCCCcceEEcCCCCEEecCCccCCCceEEcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHhC-CE--
Confidence 456788998876666899999998855899999999999999999999999999999999999999999999986 33
Q ss_pred eeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEE
Q psy15928 339 VESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKI 418 (485)
Q Consensus 339 ~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~ 418 (485)
+.++...++. .....|....+.+.++.++|+++||. +++.++|.++|++|||++..
T Consensus 255 v~~~~~~~~~-~~~~~~~~~~~~i~l~~~~i~~~lG~-----------------------~i~~~~i~~iL~~Lgf~~~~ 310 (552)
T PRK09616 255 IESVKVIYPD-GELTTPDLTPRTREVSVEYINKLLGI-----------------------DLSAEEIIELLERMRYDAEI 310 (552)
T ss_pred EEEEEEEeCC-CCEeCCCCCceEEEecHHHHHHHhCC-----------------------CCCHHHHHHHHHHcCCCcEe
Confidence 3333222211 11123334567899999999999999 99999999999999999965
Q ss_pred ecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCcccccc
Q psy15928 419 LGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIAR 467 (485)
Q Consensus 419 ~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~ 467 (485)
.++.|.|+||+||+||.+++||||||||+|||||||+++|...+.+.
T Consensus 311 --~~~~~~v~vP~~R~DI~~~~DliEEiaR~yGyd~i~~~~p~~~~~~~ 357 (552)
T PRK09616 311 --GDDKVKVTVPPYRVDILHEVDVIEDVAIAYGYNNLEPELPKVFTIGR 357 (552)
T ss_pred --cCCeEEEEeCCCcccccccchHHHHHHHHhCcccCCccCCCCccCCC
Confidence 34579999999999999999999999999999999999887444443
No 14
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.96 E-value=3.6e-29 Score=262.33 Aligned_cols=223 Identities=15% Similarity=0.275 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccC------------CCCCcEE------------eeCCCchh-
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM------------EDIPAVH------------IGNPKTLE- 56 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~------------~~~~~v~------------I~NPls~e- 56 (485)
|++....+||+...++||.|+||.-.++..+.++.||... -.+..|= +.-+++++
T Consensus 48 p~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~ 127 (529)
T PRK06253 48 PVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEK 127 (529)
T ss_pred cHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhH
Confidence 7889999999999999999999999999998878877421 0011111 11133333
Q ss_pred -------------------------------------------------------hhhhhhhchHHHHHHHHHhcCC-CC
Q psy15928 57 -------------------------------------------------------FQIARTTLVPGLLKTLAANKKM-PL 80 (485)
Q Consensus 57 -------------------------------------------------------~s~LR~SLlpgLLe~~~~N~~~-~~ 80 (485)
+++||+||+||||+++++|+++ ..
T Consensus 128 ~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~~~~svLRtSLlPGLL~tLs~Nl~Rg~~ 207 (529)
T PRK06253 128 IESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPESSRLTLRSHMTSGWFITLSSLLEKRPL 207 (529)
T ss_pred HHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCccccCccccchHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999986 56
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
++||||+|+||++++. .|..+++++++|.. | .. ....|
T Consensus 208 piRLFEIGRVFr~d~~-----eE~t~La~llsGs~--------------------------W-~~----------~e~vD 245 (529)
T PRK06253 208 PIKLFSIDRCFRREQR-----EDASRLMTYHSASC--------------------------V-IA----------DEDVT 245 (529)
T ss_pred CEEEEEEeeEEecCCc-----cchhheeEEEEccc--------------------------c-cc----------CCCCC
Confidence 8999999999976431 15568999988831 3 11 34578
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeC--CCCCccCCceEEEEE-----CC-EEEEEEEeeCHHHHHhCCCCCCEEE
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAA--DNATFFPQRCANVML-----RG-SKIGTMGVLHPEVLGKFELTLPCSI 232 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~--~~~~~hpgrsa~I~~-----~g-~~iG~iG~lhP~vl~~~di~~~v~~ 232 (485)
||++||+++.++..+|+. .+.+.+. ..++||||++|+|++ +| +.||++|++||.++++|||+.++++
T Consensus 246 FfDlKGiLE~LL~~LGI~-----~i~f~pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fDI~~pV~a 320 (529)
T PRK06253 246 VDDGKAVAEGLLSQFGFT-----KFKFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYGIDVPVMN 320 (529)
T ss_pred HHHHHHHHHHHHHHcCCC-----eEEEeecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcCCCCceEE
Confidence 999999999999999985 2567666 557799999999999 88 7899999999999999999999999
Q ss_pred EEeccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcc
Q psy15928 233 LEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 233 ~Ei~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
||||+++|.+.......+ . ...|.++ |+||.+.+|-..+
T Consensus 321 FELDLErL~~i~~~~~di---------r-~~~Y~~~----SkFPav~RDLA~V 359 (529)
T PRK06253 321 LGLGVERLAMILYGAEDV---------R-EMVYPQF----YEWELSDREIARM 359 (529)
T ss_pred EEEeHHHHHhhhcCcccc---------c-ccCcCCC----CCCCCccceEEEE
Confidence 999999997542100000 0 1135555 9999888776543
No 15
>KOG2472|consensus
Probab=99.96 E-value=1.8e-29 Score=259.15 Aligned_cols=191 Identities=52% Similarity=0.832 Sum_probs=180.7
Q ss_pred ccccccccccccCCCCCceeecCCCcccccCccccCcccceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCcce
Q psy15928 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYH 338 (485)
Q Consensus 259 ~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~~~ 338 (485)
..+.++|.+++++.|.||++.|.++.+.|+|||+||+.|+|+.+|+||++|++++|-......++..+.+|++||+.++.
T Consensus 206 d~~l~rYlhII~~sPvypvi~Ds~~~V~SlPPIiNsd~Skitl~TknIfievTaTd~~ka~ivl~~~v~lfS~~c~~~ft 285 (578)
T KOG2472|consen 206 DMHLKRYLHIIENSPVYPVIYDSKGVVCSLPPIINSDHSKITLNTKNIFIEVTATDFTKAKIVLNTIVTLFSQQCFLKFT 285 (578)
T ss_pred ccchhhhehhhcCCCccceeeCCCCceEecCCccCcccceeeeccceEEEEeeeccchhhhcccceeeehhhhhhccCcc
Confidence 44678999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEE
Q psy15928 339 VESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKI 418 (485)
Q Consensus 339 ~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~ 418 (485)
+|+++|++++|....+|.+..+..+++.+.||..+|. +++.++++.+|+||-++.+.
T Consensus 286 iepveIv~~~G~~~l~P~l~~r~~~~~~~~in~~~g~-----------------------~l~~~~~~~~l~RM~L~a~v 342 (578)
T KOG2472|consen 286 IEPVEIVCGEGGSILYPQLANRSMTMSIQAINFAIGL-----------------------NLTIEEQAYYLTRMYLKAKV 342 (578)
T ss_pred ccceEEEcCCCcEEECccccCcceeeehhhhhhhhcc-----------------------CCCHHHHHHHHhhhheeeEe
Confidence 9999999989999999999999999999999999999 99999999999999999987
Q ss_pred ecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCcccccccceeEE
Q psy15928 419 LGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLFFIF 473 (485)
Q Consensus 419 ~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~~~~~~~ 473 (485)
.+++ .+.|.||+.|+||.|.|||+||+|.+||||||+.++|...+++.+.+++-
T Consensus 343 ~~~~-~l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~lP~~~~~~~~~plNk 396 (578)
T KOG2472|consen 343 IGNG-NLEVKIPPTRADILHACDIVEDAAIAYGYNNIQMTLPASNTIAKPFPLNK 396 (578)
T ss_pred cCCC-ceEEecCCchhhhhhhhhhhhHHHHHhccccccccCcchhcccCccchHH
Confidence 6433 49999999999999999999999999999999999999999999888764
No 16
>KOG2472|consensus
Probab=99.95 E-value=4.7e-28 Score=248.71 Aligned_cols=186 Identities=63% Similarity=1.101 Sum_probs=162.2
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCC
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPL 80 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~ 80 (485)
.|+.++.+.+|..++.+||.|++|+.++|.++ + .-+...+|.|.||-+.|+.++|+|||||||++++.|+++..
T Consensus 392 ~plNkl~d~lR~e~a~ag~~E~l~~~LcS~de-----~-~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~l 465 (578)
T KOG2472|consen 392 FPLNKLTDILRIEVAAAGFTEALTFTLCSRDE-----N-VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPL 465 (578)
T ss_pred cchHHHHHHHHHHHHHhhhhhheeeeeecccc-----C-CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCC
Confidence 37899999999999999999999999999986 1 11234689999999999999999999999999999999988
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
++|||||+.|...+.+.+.+..+++|||++.+|+..+|+.++|+++.+ |.++ |-..
T Consensus 466 P~klFEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~---l~~~------~~~~--------------- 521 (578)
T KOG2472|consen 466 PIKLFEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQL---LNVP------PIRD--------------- 521 (578)
T ss_pred ceeEEEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHH---hcCC------cccc---------------
Confidence 999999999999888777788889999999999999999999998843 3333 2111
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccccc
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L 240 (485)
.|..+.++.+ |.|||||.|++.|+.||-+|.+||+|+.+|+++.|.-++|||++.+
T Consensus 522 -----------------------~Y~i~~~~~~-yfpgr~A~v~~~g~~iG~~GvlhPev~~~F~l~~~~s~~Ei~ie~~ 577 (578)
T KOG2472|consen 522 -----------------------SYYIEADEDP-YFPGRCAKVIVEGKVIGKIGVLHPEVLTKFELTYPCSAVEIDIEPF 577 (578)
T ss_pred -----------------------ceEEecCcCC-cCCCcceEEEEcCceeeeecccCHHHHhhcCCCCccceEEeeeEec
Confidence 1445666666 8899999999999999999999999999999999999999999876
No 17
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=99.95 E-value=9.5e-28 Score=267.16 Aligned_cols=160 Identities=22% Similarity=0.262 Sum_probs=130.3
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEeecc--------------------------ChHhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTAT--------------------------DLTKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~--------------------------d~~~~~~al~~~~ 326 (485)
+...+|+|++++ +|+||||||.+|+|+++|++||||+|+| ||..+..|+++++
T Consensus 199 ~~~LvI~d~~k~-lalAGVmGg~~S~V~~~T~nIlLEsA~F~p~~Irktsr~l~l~TdaS~RfERgvdp~~~~~al~ra~ 277 (704)
T CHL00192 199 NNILVVQANNVI-ISIAGIISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLGLRTDRSIRYEKSLKNDNLLEAYYRLV 277 (704)
T ss_pred CCCEEEEeCCce-eeecceecCCcceecCCccEEEEEEEEeCHHHHHHHHHHhCCcchHHhhhhcCCCHHHHHHHHHHHH
Confidence 457799999986 8999999999999999999999999955 4556666999999
Q ss_pred HHHHhhcCC-cceeeeEEEEccCCceeccCC-cccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCC---CC
Q psy15928 327 TMFSQYCED-KYHVESCEVLRSDGTSARYPE-LKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFS---ES 401 (485)
Q Consensus 327 ~L~~~~~g~-~~~~~~~~~~~~~g~~~~~~~-~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 401 (485)
.|+.+++++ ... .+..+ .+. ...+.+.++.++|+++||.+. .-+ + ++
T Consensus 278 ~Li~e~~gg~~~~---------~~~~~-~~~~~~~~~I~l~~~~i~~iLG~~~-----~~~-------------~~~~i~ 329 (704)
T CHL00192 278 SLLRILNPKLKCK---------FHFIY-KKIKNSSRRIKLSYKKIKDILGPIK-----INT-------------NTRYLS 329 (704)
T ss_pred HHHHHHcCCCEEc---------cceec-CCCCCCCeeEEeCHHHHHHhcCCCc-----ccC-------------ccccCC
Confidence 999999876 421 12222 222 245789999999999999710 000 4 89
Q ss_pred HHHHHHHHHhcCCEEEEecCCC-eEEEEcCCCCC-CCCccchhhhhhHhhhccCCCCCCCCCc
Q psy15928 402 TDKVASLLTKMCLQTKILGSGA-ELSVSIPPTRH-DIIHTCDIYEDIAIAYGYNNIPKTMPRF 462 (485)
Q Consensus 402 ~~~i~~~L~~l~~~~~~~~~~~-~~~v~~P~~R~-Di~~~~DiiEei~r~yGy~~i~~~~p~~ 462 (485)
.++|.++|++|||++... .++ .|.|+||+||+ ||.+++||||||||+|||||||+++|..
T Consensus 330 ~~ei~~iL~~Lgf~v~~~-~~~~~~~V~vP~~R~~DI~~~~DliEEIaRiyGYdnI~~~~p~~ 391 (704)
T CHL00192 330 PKEITNALKRLNFKITYD-SLKLNWEVLIPSYRKDDIVREIDVIEEIARIYGFNNFLSKLPNI 391 (704)
T ss_pred HHHHHHHHHHCCCEEEec-CCCceEEEEcCCCCchhcCchhHHHHHHHHhcCcccCccccccc
Confidence 999999999999999652 133 69999999998 9999999999999999999999998864
No 18
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.95 E-value=1.3e-27 Score=269.96 Aligned_cols=155 Identities=25% Similarity=0.432 Sum_probs=131.5
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEeec--------------------------cChHhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTA--------------------------TDLTKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~--------------------------~d~~~~~~al~~~~ 326 (485)
+++++|+|++++ +|+|||||+.+|+|+++|++||+|+|+ +||..+..|+++++
T Consensus 298 ~~~lvi~d~~~~-lsl~gi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~t~as~RfeRGvdp~~~~~al~~a~ 376 (791)
T PRK00629 298 PEDLVIADDKKP-LALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFERGVDPALTLLALERAT 376 (791)
T ss_pred CCcEEEEeCCCe-EEEeeeecCccccccCCCcEEEEEEcccChHHHHHHHHHhCCCchhhhheccCCCHHHHHHHHHHHH
Confidence 568999999885 899999999999999999999999995 45555777999999
Q ss_pred HHHHhhcCCcceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHH
Q psy15928 327 TMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVA 406 (485)
Q Consensus 327 ~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 406 (485)
.|+.+++++.+ .. +....++....+.+.++.++|+++||. +++.++|.
T Consensus 377 ~ll~e~~~g~i--~~-------~~~~~~~~~~~~~I~~~~~~i~~ilG~-----------------------~i~~~~i~ 424 (791)
T PRK00629 377 ALILELGGGEV--VE-------GVVDVYPLPKEPTITLRLERINRLLGT-----------------------EISDEEIV 424 (791)
T ss_pred HHHHHHcCCeE--ee-------eeEecCCCCCCeEEEecHHHHHHHhCC-----------------------CCCHHHHH
Confidence 99999966432 11 122223222357899999999999999 99999999
Q ss_pred HHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCC
Q psy15928 407 SLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPR 461 (485)
Q Consensus 407 ~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~ 461 (485)
++|++|||++... +++.|.|+||+||+||.+++||||||+|+|||||||+++|.
T Consensus 425 ~iL~~Lgf~~~~~-~~~~~~V~vPs~R~DI~~~~DliEEI~RiyGyd~i~~~~p~ 478 (791)
T PRK00629 425 DILKRLGFEVTEV-DGDGLTVTVPSWRFDIEIEEDLVEEVARIYGYDNIPSTPPV 478 (791)
T ss_pred HHHHHCCCEEEec-CCCeEEEECCCCccccCcccHHHHHHHHHhCcccCcCcCCC
Confidence 9999999999752 21569999999999999999999999999999999999886
No 19
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=99.95 E-value=2.9e-27 Score=267.41 Aligned_cols=162 Identities=26% Similarity=0.368 Sum_probs=135.8
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEeecc--------------------------ChHhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTAT--------------------------DLTKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~--------------------------d~~~~~~al~~~~ 326 (485)
+..++|+|++++ +|+|||||+++|+|+++|++||+|+|++ ||..+..|+++++
T Consensus 302 ~~~lvi~d~~~~-lsi~gi~~~~~s~i~~~T~~i~le~a~f~~~~ir~t~~~l~l~t~as~RferGvd~~~~~~al~~~~ 380 (798)
T TIGR00472 302 KGDLVIADDKKP-LAIAGVMGGKESGVTDTTTNIFLESAYFNPERIRKTARRLGISTDSSYRFERGVDPELTELALDRAL 380 (798)
T ss_pred CCcEEEEECCce-EEEeeeecCccccccCCccEEEEEEEeeCHHHHHHHHHHhCCCchhhhhhhcCCCHHHHHHHHHHHH
Confidence 567999999975 8999999999999999999999999955 4555578999999
Q ss_pred HHHHhhcCCcceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHH
Q psy15928 327 TMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVA 406 (485)
Q Consensus 327 ~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 406 (485)
+|+.+++++.+ ....+ ....+...++.+.++.++|+++||+ +++.++|.
T Consensus 381 ~ll~e~~~~~~--~~~~~------~~~~~~~~~~~i~~~~~~i~~~lG~-----------------------~i~~~ei~ 429 (798)
T TIGR00472 381 NLILEIFGGEV--ISVVS------DVYKEKAKEKKISLRIKKLNKILGI-----------------------SLSDEEVR 429 (798)
T ss_pred HHHHHHhCCee--cceee------eccCCCCCCeEEEecHHHHHHHhCC-----------------------ccCHHHHH
Confidence 99999987642 11111 0112334567899999999999999 99999999
Q ss_pred HHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCccccccc
Q psy15928 407 SLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQ 468 (485)
Q Consensus 407 ~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~~ 468 (485)
++|++|||++.. .++.|.|+||+||+||.+++||||||||+|||||||+++|.....+..
T Consensus 430 ~iL~~Lgf~~~~--~~~~~~V~vP~~R~DI~~~~DliEEI~R~yGydni~~~~p~~~~~~~~ 489 (798)
T TIGR00472 430 DILKRLGFKVEK--QKDGWEVTVPSYRHDITIEEDLIEEIARIYGYDNIPAEPLSVSSKLNK 489 (798)
T ss_pred HHHHHCCCEEEe--cCCeEEEECCCCccccccchhhHhhhhhhhCcccCCCCCCCcccCCCC
Confidence 999999999976 345699999999999999999999999999999999998875555443
No 20
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.94 E-value=1.7e-26 Score=226.77 Aligned_cols=195 Identities=26% Similarity=0.385 Sum_probs=165.8
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-----CCcEEeeCCCc--hhhhhhhhhchHHHHHHHH
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-----IPAVHIGNPKT--LEFQIARTTLVPGLLKTLA 73 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls--~e~s~LR~SLlpgLLe~~~ 73 (485)
.|++++.+++|+.|+++||+|+.++.+.+..+.+++|+++.++ .+.+.|.||.+ ++..+|||+++|++++++
T Consensus 17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l- 95 (247)
T PF01409_consen 17 HPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL- 95 (247)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH-
Confidence 3789999999999999999999999998988888999987653 24688999999 999999999999999999
Q ss_pred HhcCCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhh
Q psy15928 74 ANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAV 153 (485)
Q Consensus 74 ~N~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (485)
|.++..++|+||+|+||+++..+.++..+.+.+.+++.++.
T Consensus 96 -~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~-------------------------------------- 136 (247)
T PF01409_consen 96 -NKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKN-------------------------------------- 136 (247)
T ss_dssp -TTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETT--------------------------------------
T ss_pred -HHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecc--------------------------------------
Confidence 55555689999999999998755555667778888887642
Q ss_pred hcCCCCCHHHHHHHHHHHHHHh-CCCCCCCCceEEeeCCCCCccCCceEEEEE----CC--EEEEEEEeeCHHHHHhCCC
Q psy15928 154 YYNKSPGFEIIHGLLDRVMQLL-QIPLDKTEGYCIQAADNATFFPQRCANVML----RG--SKIGTMGVLHPEVLGKFEL 226 (485)
Q Consensus 154 ~~~~~~~f~~lKg~ve~ll~~l-gi~~~~~~~~~~~~~~~~~~hpgrsa~I~~----~g--~~iG~iG~lhP~vl~~~di 226 (485)
.+|.++||.++.+++.+ |.+. +++++++..|+++|+++++|++ ++ ..||.+|++||+|++++|+
T Consensus 137 -----~~f~~Lk~~l~~l~~~lfG~~~----~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gi 207 (247)
T PF01409_consen 137 -----VTFEDLKGTLEELLKELFGIDV----KVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGI 207 (247)
T ss_dssp -----E-HHHHHHHHHHHHHHHHTTTE----EEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT-
T ss_pred -----cchhHHHHHHHHHHHHHhhccc----ceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCc
Confidence 46889999999999999 8863 4789998899999999999999 33 4799999999999999999
Q ss_pred --CCCEEEEEeccccccccc
Q psy15928 227 --TLPCSILEINIEPFNFAK 244 (485)
Q Consensus 227 --~~~v~~~Ei~ld~L~~~~ 244 (485)
+.++++|++.+|+|...+
T Consensus 208 d~~~~~~A~G~GleRlam~~ 227 (247)
T PF01409_consen 208 DEEYPGFAFGLGLERLAMLK 227 (247)
T ss_dssp -TTSEEEEEEEEHHHHHHHH
T ss_pred CccceEEEecCCHHHHHHHH
Confidence 778999999999998764
No 21
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.4e-26 Score=250.77 Aligned_cols=162 Identities=25% Similarity=0.481 Sum_probs=140.9
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEee--------------------------ccChHhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECT--------------------------ATDLTKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a--------------------------~~d~~~~~~al~~~~ 326 (485)
+...+|+|..+. +|+|||||+++|+++++|+++++|+| |+|+..+..||++++
T Consensus 160 ~~~~vi~d~~~~-~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~al~~~~ 238 (650)
T COG0072 160 TGDLVIADHEKG-LALAGVMGGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEKALNRAT 238 (650)
T ss_pred CCCEEEEeCCCc-eeeeeeeeccccCCCccceeeeeeeEecChHHHHhhcccccCCcceeEEeecCCCHHHHHHHHHHHH
Confidence 667899999996 79999999999999999999999999 467788888999999
Q ss_pred HHHHhhcCCcceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHH
Q psy15928 327 TMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVA 406 (485)
Q Consensus 327 ~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 406 (485)
.+|.++||+. ++++.+..... ...+++.+.+++++|+++||. +++.++|.
T Consensus 239 ~ll~e~~gg~--v~~~~~~~~~~-----~~~~~~~i~~~~~~i~~llG~-----------------------~ls~eei~ 288 (650)
T COG0072 239 TLLAEICGGE--VSSVVIVGGDE-----KLTPPRKIELRLERINRLLGL-----------------------ELSAEEIE 288 (650)
T ss_pred HHHHHhcCCe--eeeEEEecCCc-----CCCCCceEEecHHHHHHHhCC-----------------------CCCHHHHH
Confidence 9999999853 45454432111 111268999999999999999 99999999
Q ss_pred HHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCcccccc
Q psy15928 407 SLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIAR 467 (485)
Q Consensus 407 ~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~ 467 (485)
++|++|||++.. .++.|.|++|+||+||.|++||||||||+|||||||+++|...+.++
T Consensus 289 ~iL~rLg~~~~~--~~~~~~V~vPs~R~DI~~e~DliEEv~r~yGy~ni~~~~p~~~~~~~ 347 (650)
T COG0072 289 KILKRLGFKVEV--KGDGLTVTVPSYRVDILIEADLIEEVARIYGYNNIPPELPSAFTIGR 347 (650)
T ss_pred HHHHHcCCeeEe--cCCcEEEeCCCCcccccchhHHHHHHHHHhCcccCCCcCCccccccc
Confidence 999999999987 45569999999999999999999999999999999999999887666
No 22
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.90 E-value=5.3e-23 Score=212.99 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=153.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCC--chhhhhhhhhchHHHHHHHHHhcC-C
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPK--TLEFQIARTTLVPGLLKTLAANKK-M 78 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPl--s~e~s~LR~SLlpgLLe~~~~N~~-~ 78 (485)
|+..+++.+|+.|.++||+|++|+.|++.+. ++.|+... ...+.||+ .++..+||++++|+|++.++.|.+ .
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~-~E~m~~~~----g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l 315 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGIDN----DTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRAL 315 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHH-HHhhcCcc----CCcccccceEecCceEecccCHHHHHHHHHHhhhhc
Confidence 6788999999999999999999999997665 47776532 13567787 778899999999999999998754 3
Q ss_pred CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKS 158 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (485)
..++|+||||+||+.+..+..+..|.+++++.+.|..
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~------------------------------------------- 352 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSG------------------------------------------- 352 (453)
T ss_pred cCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCC-------------------------------------------
Confidence 5689999999999987654445677889999998864
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEE--EEEEeeCHHHHHhCCCCCCEEEEEec
Q psy15928 159 PGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKI--GTMGVLHPEVLGKFELTLPCSILEIN 236 (485)
Q Consensus 159 ~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~i--G~iG~lhP~vl~~~di~~~v~~~Ei~ 236 (485)
..|.++++++..++..+|++ +++. +++.|.|||+|+|+.++..+ |+||++|| +++|||..||.+|||+
T Consensus 353 atfaDlealL~e~Lr~LGId------feit--E~s~FI~GR~A~I~~G~~Ev~~GvfGEihp--L~~fGIe~PVvAfEI~ 422 (453)
T TIGR02367 353 CTRENLEAIIKDFLDHLEID------FEIV--GDSCMVYGDTLDIMHGDLELSSAVVGPIPL--DREWGIDKPWIGAGFG 422 (453)
T ss_pred CCHHHHHHHHHHHHHHCCCc------eEEe--CCCceEecceeeeecCCEEEeeEEEeeccc--ccccCCCCccEEEEee
Confidence 24668889999999999985 5564 45778999999999666656 99999996 9999999999999999
Q ss_pred cccccccc
Q psy15928 237 IEPFNFAK 244 (485)
Q Consensus 237 ld~L~~~~ 244 (485)
|++|....
T Consensus 423 LeRLam~~ 430 (453)
T TIGR02367 423 LERLLKVK 430 (453)
T ss_pred hhHHHHHH
Confidence 99998753
No 23
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=1.5e-22 Score=210.24 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=150.7
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCC--chhhhhhhhhchHHHHHHHHHhcCC-
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPK--TLEFQIARTTLVPGLLKTLAANKKM- 78 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPl--s~e~s~LR~SLlpgLLe~~~~N~~~- 78 (485)
|...+++.+|+.|.++||+|++|+.|++.+. ++.++...+ ..+.+|+ .++..+||++|+|+|++.++.|.+.
T Consensus 205 ~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~-~e~~g~~~g----~~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~ 279 (417)
T PRK09537 205 YLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGIDND----TELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRIL 279 (417)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HHHhCCCCc----ccchhhheeeCCceEehhhhHHHHHHHHHhhhhcc
Confidence 5778999999999999999999999998775 466664321 1233444 4568999999999999999988653
Q ss_pred CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKS 158 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (485)
..++|+||||+||+.+..+..+..|.+.+++.+.|..
T Consensus 280 ~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~------------------------------------------- 316 (417)
T PRK09537 280 PDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSG------------------------------------------- 316 (417)
T ss_pred cCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCc-------------------------------------------
Confidence 5689999999999987644334566778888877642
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEE--EEEEeeCHHHHHhCCCCCCEEEEEec
Q psy15928 159 PGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKI--GTMGVLHPEVLGKFELTLPCSILEIN 236 (485)
Q Consensus 159 ~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~i--G~iG~lhP~vl~~~di~~~v~~~Ei~ 236 (485)
.+|.+++++++.++..+|++ |++. .++.|+|||+|+|..+++.+ |++|++| ++++|||..||++|||+
T Consensus 317 ~~f~dL~~lleeLL~~LGI~------f~i~--s~~~fi~GR~adI~~g~~el~~G~fGEi~--VLe~fGI~~PVva~EId 386 (417)
T PRK09537 317 CTRENLENIIDDFLKHLGID------YEII--GDNCMVYGDTIDIMHGDLELSSAVVGPIP--LDREWGIDKPWIGAGFG 386 (417)
T ss_pred hHHHHHHHHHHHHHHHCCCC------cEEe--cCCcceecCeEEEEeCCEEEeeEEEEEEe--hhhhcCCCCceEEEEEe
Confidence 24678999999999999985 4554 44578999999999988877 9999995 99999999999999999
Q ss_pred cccccccc
Q psy15928 237 IEPFNFAK 244 (485)
Q Consensus 237 ld~L~~~~ 244 (485)
|++|....
T Consensus 387 LerL~~~~ 394 (417)
T PRK09537 387 LERLLKVK 394 (417)
T ss_pred HHHHHHHH
Confidence 99998754
No 24
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.89 E-value=9.5e-23 Score=193.59 Aligned_cols=176 Identities=21% Similarity=0.227 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
..+++++|+.|++.||+|++||+|++.+.. ...+.. ...+.+.||++++..+||+|++|+|++++++|. +..++|
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~-~~~~~~ 77 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLL-EKAGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHH-HHcCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc-ccCCEE
Confidence 568899999999999999999999998754 444432 235789999999999999999999999999999 666899
Q ss_pred EEEeCcEEecCCccc--cccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCH
Q psy15928 84 LFEISDIVYKDATAE--VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGF 161 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~--~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 161 (485)
+||+|+||+.+.... ....|...+++.++|... ....+|
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~---------------------------------------~~~~~~ 118 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDG---------------------------------------EEASEF 118 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCc---------------------------------------hhHHHH
Confidence 999999998754321 113466788888887531 011368
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEe-eCCCCCc--cCCceEEEEEC-----CEEEEEEEeeCHHHHHhCCCC
Q psy15928 162 EIIHGLLDRVMQLLQIPLDKTEGYCIQ-AADNATF--FPQRCANVMLR-----GSKIGTMGVLHPEVLGKFELT 227 (485)
Q Consensus 162 ~~lKg~ve~ll~~lgi~~~~~~~~~~~-~~~~~~~--hpgrsa~I~~~-----g~~iG~iG~lhP~vl~~~di~ 227 (485)
+++|++++.+++.+|+.. .+.+. ....+.+ |||++++|.++ ++.||++|++||.++++++|.
T Consensus 119 ~~~~~~~~~~l~~lg~~~----~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~ 188 (211)
T cd00768 119 EELIELTEELLRALGIKL----DIVFVEKTPGEFSPGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLY 188 (211)
T ss_pred HHHHHHHHHHHHHcCCCc----ceEEEecCchhhccccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhh
Confidence 899999999999999732 14454 3333444 99999999999 999999999999999999986
No 25
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.87 E-value=1.8e-21 Score=209.20 Aligned_cols=193 Identities=19% Similarity=0.219 Sum_probs=156.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-----CCcEEeeCCCch---------------------
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-----IPAVHIGNPKTL--------------------- 55 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~--------------------- 55 (485)
|+.++.+++|+.+..+||.|+-+..+-+.-+.++.+..|.++ .+.+.+.+|-..
T Consensus 234 ~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~~~ 313 (489)
T PRK04172 234 PYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDTG 313 (489)
T ss_pred hHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCCCC
Confidence 788999999999999999999877776665556677665443 135666665421
Q ss_pred -------------hhhhhhhhchHHHHHHHHHhcCCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhh
Q psy15928 56 -------------EFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIH 122 (485)
Q Consensus 56 -------------e~s~LR~SLlpgLLe~~~~N~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~ 122 (485)
..-+||++++|++++.++.+. +.++|+||||+||+++..+..+..|.+.++++++|..
T Consensus 314 ~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~--~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~------- 384 (489)
T PRK04172 314 SRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP--EPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGED------- 384 (489)
T ss_pred CccccCCcchhhhhccccccCChHHHHHHHHhcC--CCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCC-------
Confidence 124899999999999999843 4589999999999875422222457778999998852
Q ss_pred hhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEE
Q psy15928 123 GLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCAN 202 (485)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~ 202 (485)
.+|+++||+++.++..+|+. .+++.+..+|++||+++|.
T Consensus 385 ------------------------------------~~f~elkg~l~~ll~~lGi~-----~~~~~~~~~p~~~P~~~~~ 423 (489)
T PRK04172 385 ------------------------------------VSFRDLLGILKEFYKRLGFE-----EVKFRPAYFPFTEPSVEVE 423 (489)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHhCCc-----eEEEcCCcCCCCCCeEEEE
Confidence 46899999999999999985 3778888889999999999
Q ss_pred EEECC---EEEEEEEeeCHHHHHhCCCCCCEEEEEeccccccccc
Q psy15928 203 VMLRG---SKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAK 244 (485)
Q Consensus 203 I~~~g---~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L~~~~ 244 (485)
|+++| +.||++|++||++++.+||+.+|++|||++++|...+
T Consensus 424 i~~~g~~w~eiG~~G~l~Pevl~~~gi~~~v~~~el~le~l~m~~ 468 (489)
T PRK04172 424 VYHEGLGWVELGGAGIFRPEVLEPLGIDVPVLAWGLGIERLAMLR 468 (489)
T ss_pred EEECCCCeEEEEeccccCHHHHHHCCCCCceEEEEEcHHHHHHHH
Confidence 99977 7899999999999999999999999999999997654
No 26
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.84 E-value=5e-20 Score=190.59 Aligned_cols=195 Identities=18% Similarity=0.298 Sum_probs=158.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccC------------CCCCcEE-----------eeCCCchh--
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM------------EDIPAVH-----------IGNPKTLE-- 56 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~------------~~~~~v~-----------I~NPls~e-- 56 (485)
|++...++||++..++||.|++|.-.++..+.++.||... -.+..|= +.-+++++
T Consensus 48 pv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~~~~ 127 (533)
T TIGR00470 48 PLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDDEKK 127 (533)
T ss_pred cHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCChhHH
Confidence 7889999999999999999999999999998878777421 0011111 11133333
Q ss_pred ------------------------------------------------------hhhhhhhchHHHHHHHHH-hcCCCCC
Q psy15928 57 ------------------------------------------------------FQIARTTLVPGLLKTLAA-NKKMPLP 81 (485)
Q Consensus 57 ------------------------------------------------------~s~LR~SLlpgLLe~~~~-N~~~~~~ 81 (485)
..+|||+++|+++.+++. |.++..+
T Consensus 128 e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~~~lLRTHTTpgqirtL~~L~~~~~~P 207 (533)
T TIGR00470 128 ERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPESTTLTLRSHMTSGWFITLSSIIDKRKLP 207 (533)
T ss_pred HHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhhCcccccCChhHHHHHHHHHhhcCCCC
Confidence 669999999999999997 6555678
Q ss_pred eeEEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 82 LKLFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+|+||+|+||++++. +.++..+.+.+.+++.|+. ++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVded-------------------------------------------VS 244 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEE-------------------------------------------VS 244 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCC-------------------------------------------CC
Confidence 999999999998853 3355667889999988763 46
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCCC--CCccCCceEEEEECC------EEEEEEEeeCHHHHHhCCCCCCEEE
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAADN--ATFFPQRCANVMLRG------SKIGTMGVLHPEVLGKFELTLPCSI 232 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~--~~~hpgrsa~I~~~g------~~iG~iG~lhP~vl~~~di~~~v~~ 232 (485)
|-++||+++.++..+|.. +++|+++++ ++|.|+++++|.+.+ ..||.+|++||++++++||+.|+++
T Consensus 245 f~DLKgvLe~LLr~LG~~-----~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~PV~A 319 (533)
T TIGR00470 245 VDDGKAVAEGLLAQFGFT-----KFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMN 319 (533)
T ss_pred HHHHHHHHHHHHHHhCCc-----eEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCceEE
Confidence 789999999999999863 488998866 889999999999855 5899999999999999999999999
Q ss_pred EEeccccccccc
Q psy15928 233 LEINIEPFNFAK 244 (485)
Q Consensus 233 ~Ei~ld~L~~~~ 244 (485)
|+|++++|...+
T Consensus 320 FGIGVERlAMi~ 331 (533)
T TIGR00470 320 LGLGVERLAMIL 331 (533)
T ss_pred EEecHHHHHHHH
Confidence 999999998764
No 27
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.82 E-value=1.9e-19 Score=186.52 Aligned_cols=233 Identities=13% Similarity=0.097 Sum_probs=169.0
Q ss_pred hhhHHHHHHHHHHHHC---CCeEeec-cceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHHHHHHH
Q psy15928 2 PLNKLSDQLRGDIAQA---GFTEVLT-FALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPGLLKTL 72 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~---Gf~Evit-ysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpgLLe~~ 72 (485)
|+..+.++|++++.++ ||.++-. ...++..+.++.+++|.+. .+...| | +..+|||+-.+.-.+.+
T Consensus 69 Pl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~-~----~~~lLRTHTSa~q~~~l 143 (402)
T PLN02788 69 PLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV-D----AQTVLRCHTSAHQAELL 143 (402)
T ss_pred hHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-c----CCccccCCCcHHHHHHH
Confidence 7889999999999998 9988865 7888888888999988764 135566 3 36799999999999999
Q ss_pred HHhcCCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhh
Q psy15928 73 AANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVA 152 (485)
Q Consensus 73 ~~N~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (485)
+.+. -++|-+|+||+++.-+.++..+.+.+-+++.... +.|....
T Consensus 144 ~~~~-----~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~------------------------~~~~~~~------ 188 (402)
T PLN02788 144 RAGH-----THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSP------------------------EEWEASG------ 188 (402)
T ss_pred HhCC-----CcEEEEeeEeecCCCCcccCccceeEEEEEEecc------------------------ccccccc------
Confidence 9643 2899999999998755455555556655554322 1121110
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHh-CCCCCCCCceEEeeCCCCCccCCceEEEEECCE---EEEEEEeeCHHHHHhCCCCC
Q psy15928 153 VYYNKSPGFEIIHGLLDRVMQLL-QIPLDKTEGYCIQAADNATFFPQRCANVMLRGS---KIGTMGVLHPEVLGKFELTL 228 (485)
Q Consensus 153 ~~~~~~~~f~~lKg~ve~ll~~l-gi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~---~iG~iG~lhP~vl~~~di~~ 228 (485)
.......+.++||+++.++..+ |+. +++|++...|++||+++++|+++|+ ++| +|++||++++++|++.
T Consensus 189 -~~~~~~~~~dLKg~Le~l~~~lfg~~-----~~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG-~G~vhP~Vl~~~gi~~ 261 (402)
T PLN02788 189 -LDGTDLAAEDLKKTLEGLARHLFGDV-----EMRWVDAYFPFTNPSFELEIFFKGEWLEVLG-CGVTEQEILKNNGRSD 261 (402)
T ss_pred -ccccccCHHHHHHHHHHHHHHhcCCC-----ceEEecCCCCCCCCCeEEEEEECCEEEEEee-EEEEcHHHHHHcCCCC
Confidence 0012367899999999999998 873 3778888889999999999999998 889 9999999999999987
Q ss_pred -CEEEEEeccccccccccccCCCCccccc------cccccc--ccccccccCCCCCceeecCCCcc
Q psy15928 229 -PCSILEINIEPFNFAKMLYSPFNSCFSS------QTHSQL--KQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 229 -~v~~~Ei~ld~L~~~~~~~~~~s~~~~s------~~~~~~--~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
.+|+|||+|++|....-....+.-|-+. |-.... .+|.++ |+||.+.+|-..+
T Consensus 262 ~~g~AfglgLeRLaml~~~I~DIRlf~~~D~rfl~Qf~~~~~~~~fkp~----SkfP~v~RDiSf~ 323 (402)
T PLN02788 262 NVAWAFGLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQLGVKFKPY----SKYPPCYKDISFW 323 (402)
T ss_pred CcEEEEEEeHHHHHHhhcCCchhhhhhcccHHHHHhccccccccccCcC----CCCCCcceeEEEE
Confidence 6899999999997643111111111111 111111 145555 9999888876643
No 28
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=99.81 E-value=4.9e-20 Score=146.91 Aligned_cols=70 Identities=31% Similarity=0.596 Sum_probs=60.2
Q ss_pred cceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEEecCCCeEEEEcCCCCCCCCc
Q psy15928 359 VRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIH 438 (485)
Q Consensus 359 ~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~ 438 (485)
+++++++.++++++||. +++.+++.++|++|||++... +++.|.|++|+||+||.+
T Consensus 1 p~~i~~~~~~i~~~lG~-----------------------~i~~~~i~~~L~~lg~~~~~~-~~~~~~v~vP~~R~Di~~ 56 (70)
T PF03484_consen 1 PKKITLSLDKINKLLGI-----------------------DISPEEIIKILKRLGFKVEKI-DGDTLEVTVPSYRFDIEH 56 (70)
T ss_dssp -EEEEEEHHHHHHHHTS--------------------------HHHHHHHHHHTT-EEEE--CTTEEEEEEETTSTT-SS
T ss_pred CeEEEecHHHHHHHhCC-----------------------CCCHHHHHHHHHHCCCEEEEC-CCCEEEEEcCCCcCCcCc
Confidence 36899999999999999 999999999999999999874 467899999999999999
Q ss_pred cchhhhhhHhhhcc
Q psy15928 439 TCDIYEDIAIAYGY 452 (485)
Q Consensus 439 ~~DiiEei~r~yGy 452 (485)
++||+|||||+|||
T Consensus 57 ~~DliEEiaR~yGY 70 (70)
T PF03484_consen 57 EEDLIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred ccHHHHHHHHHhCC
Confidence 99999999999998
No 29
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.79 E-value=5.1e-18 Score=172.22 Aligned_cols=189 Identities=14% Similarity=0.142 Sum_probs=153.5
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 76 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~ 76 (485)
|+..+.+++|+.|+++||+|+.++.+++..+.++++++|.++ .+.+.| ++..+|||+++|+++++++.
T Consensus 109 Pl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI-----~~~~lLRThTSp~qir~L~~-- 181 (339)
T PRK00488 109 PITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI-----DDGLLLRTHTSPVQIRTMEK-- 181 (339)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE-----cCCceeeccCcHHHHHHHHh--
Confidence 789999999999999999999999999998888999987653 145777 57899999999999999986
Q ss_pred CCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcC
Q psy15928 77 KMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYN 156 (485)
Q Consensus 77 ~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (485)
+..++|+||+|+||+++..+.++..+.+.+.+++.++.
T Consensus 182 -~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~----------------------------------------- 219 (339)
T PRK00488 182 -QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKN----------------------------------------- 219 (339)
T ss_pred -cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCC-----------------------------------------
Confidence 34589999999999987644444455667888877643
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEEC-------------CE-EEEEEEeeCHHHHH
Q psy15928 157 KSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLR-------------GS-KIGTMGVLHPEVLG 222 (485)
Q Consensus 157 ~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~-------------g~-~iG~iG~lhP~vl~ 222 (485)
++|-++||.++.++..+.-+. ..++|+++-.|+..|+...+|.+. |+ .|+=.|.+||+|++
T Consensus 220 --vtf~dLK~~L~~fl~~~fg~~---~~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~ 294 (339)
T PRK00488 220 --ISFADLKGTLEDFLKAFFGED---VKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLR 294 (339)
T ss_pred --CCHHHHHHHHHHHHHHHcCCC---CeEEecCCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHH
Confidence 467899999999999883211 147899988888789988888763 33 56669999999999
Q ss_pred hCCCCCC---EEEEEeccccccccc
Q psy15928 223 KFELTLP---CSILEINIEPFNFAK 244 (485)
Q Consensus 223 ~~di~~~---v~~~Ei~ld~L~~~~ 244 (485)
+.|++.+ .++|.+.+|+|...+
T Consensus 295 ~~gid~~~~~G~AfG~GleRlaMl~ 319 (339)
T PRK00488 295 NVGIDPEEYSGFAFGMGIERLAMLK 319 (339)
T ss_pred HcCCCcccceEEEEeecHHHHHHHH
Confidence 9999743 689999999998764
No 30
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.77 E-value=7.9e-19 Score=140.11 Aligned_cols=70 Identities=24% Similarity=0.580 Sum_probs=64.2
Q ss_pred ceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEEecCCCeEEEEcCCCCCCCCcc
Q psy15928 360 RKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHT 439 (485)
Q Consensus 360 ~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~ 439 (485)
+.++++.+++++++|. +++.+++.++|++|||++...+.++.|.|.+|+||+||.++
T Consensus 2 ~~i~~~~~~i~~llG~-----------------------~i~~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~ 58 (71)
T smart00874 2 RTITLRRERINRLLGL-----------------------DLSAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIE 58 (71)
T ss_pred cEEEecHHHHHHHHCC-----------------------CCCHHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcc
Confidence 5789999999999999 99999999999999999976322457999999999999999
Q ss_pred chhhhhhHhhhcc
Q psy15928 440 CDIYEDIAIAYGY 452 (485)
Q Consensus 440 ~DiiEei~r~yGy 452 (485)
+||+|||||+|||
T Consensus 59 ~DliEei~r~~Gy 71 (71)
T smart00874 59 ADLIEEVARIYGY 71 (71)
T ss_pred cHHHHHHHHHhCC
Confidence 9999999999998
No 31
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.55 E-value=2.1e-13 Score=144.07 Aligned_cols=196 Identities=18% Similarity=0.159 Sum_probs=153.8
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeecccee-chhhhHHHhcccCCC-----CCcEEeeCCCch-------------------
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALC-SRDDVSVKLRQKMED-----IPAVHIGNPKTL------------------- 55 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~-s~~~~~~~~~~~~~~-----~~~v~I~NPls~------------------- 55 (485)
.|+.++.+.+|++|.++||.|+-+-+++ +.-+.++++++|.++ .+...|.+|-..
T Consensus 221 HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~ 300 (492)
T PLN02853 221 HPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGG 300 (492)
T ss_pred CHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCC
Confidence 3889999999999999999999544444 444566888877653 246788776432
Q ss_pred ---------------hhhhhhhhchHHHHHHHHHhcCC-CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChh
Q psy15928 56 ---------------EFQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFE 119 (485)
Q Consensus 56 ---------------e~s~LR~SLlpgLLe~~~~N~~~-~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~ 119 (485)
...+|||+-.+.-.+.+..+.+. ..++|+|-+|+||+++.-+.++..+.+.+-+++.++
T Consensus 301 ~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~----- 375 (492)
T PLN02853 301 YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDR----- 375 (492)
T ss_pred CCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeC-----
Confidence 36899999999999999977544 358999999999998875555555556665555543
Q ss_pred HhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCc
Q psy15928 120 IIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQR 199 (485)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgr 199 (485)
.++|.+|+|+++.++..+|.. +++|+|+-.|+..|+-
T Consensus 376 --------------------------------------~~t~~~L~g~l~~f~~~lg~~-----~~RfrP~yfPfTEPS~ 412 (492)
T PLN02853 376 --------------------------------------GLTLGDLIGVLEDFFSRLGMT-----KLRFKPAYNPYTEPSM 412 (492)
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHHcCCc-----eEEEecCCCCCCCCeE
Confidence 256889999999999999873 5899999889888987
Q ss_pred eEEEEEC--C--EEEEEEEeeCHHHHHhCCCCCC--EEEEEeccccccccc
Q psy15928 200 CANVMLR--G--SKIGTMGVLHPEVLGKFELTLP--CSILEINIEPFNFAK 244 (485)
Q Consensus 200 sa~I~~~--g--~~iG~iG~lhP~vl~~~di~~~--v~~~Ei~ld~L~~~~ 244 (485)
...++.. | -.||-.|.+||++++.+||+.+ +++|.+.++++...+
T Consensus 413 Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~~~~~~~A~GlGleRlaMl~ 463 (492)
T PLN02853 413 EIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLPEDVNVIAWGLSLERPTMIL 463 (492)
T ss_pred EEEEEecCCCCEEEEecCcCcCHHHHHhCCCCCcceEEEEEecHHHHHHHH
Confidence 7777654 4 3688899999999999999654 899999999998764
No 32
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.52 E-value=4.5e-13 Score=142.26 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=156.3
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccce-echhhhHHHhcccCCC-----CCcEEeeCCCch-------------------
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFAL-CSRDDVSVKLRQKMED-----IPAVHIGNPKTL------------------- 55 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf-~s~~~~~~~~~~~~~~-----~~~v~I~NPls~------------------- 55 (485)
.|+.++.+++|++|.++||.|+-+.++ .+.-+.++++++|.++ .+...|.+|-..
T Consensus 229 HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~ 308 (494)
T PTZ00326 229 HPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEV 308 (494)
T ss_pred ChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhcc
Confidence 388999999999999999999976644 4444567888877653 246788776433
Q ss_pred -----------------hhhhhhhhchHHHHHHHHHhcCC----C--CCeeEEEeCcEEecCCccccccccceEEEEEEe
Q psy15928 56 -----------------EFQIARTTLVPGLLKTLAANKKM----P--LPLKLFEISDIVYKDATAEVGARNQRNLVAVYY 112 (485)
Q Consensus 56 -----------------e~s~LR~SLlpgLLe~~~~N~~~----~--~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~ 112 (485)
...+|||+..+...+.++.+.+. . .++|+|-||+||+++..+..+..+.+.+-+++.
T Consensus 309 G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi 388 (494)
T PTZ00326 309 GGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVI 388 (494)
T ss_pred CCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEE
Confidence 25799999999999999988542 2 389999999999988755555667778877777
Q ss_pred cCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCC
Q psy15928 113 NKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADN 192 (485)
Q Consensus 113 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~ 192 (485)
|+. ..+.+++|++..++..+|+. +++|+|+-.
T Consensus 389 ~~~-------------------------------------------~s~~~L~~~l~~f~~~lG~~-----~~RfrP~yf 420 (494)
T PTZ00326 389 DRN-------------------------------------------LTLGDLIGTIREFFRRIGIT-----KLRFKPAFN 420 (494)
T ss_pred eCC-------------------------------------------CCHHHHHHHHHHHHHhcCCC-----ceEEecCCC
Confidence 653 24678999999999999874 478999888
Q ss_pred CCccCCceEEEEEC--C--EEEEEEEeeCHHHHHhCCCCC--CEEEEEeccccccccc
Q psy15928 193 ATFFPQRCANVMLR--G--SKIGTMGVLHPEVLGKFELTL--PCSILEINIEPFNFAK 244 (485)
Q Consensus 193 ~~~hpgrsa~I~~~--g--~~iG~iG~lhP~vl~~~di~~--~v~~~Ei~ld~L~~~~ 244 (485)
|+..|+-...+++. | -.||-.|.+||++++.+|++. ++++|.+.++++...+
T Consensus 421 PfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~~~~~~~A~GlGleRlaMi~ 478 (494)
T PTZ00326 421 PYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGFPEDVTVIAWGLSLERPTMIK 478 (494)
T ss_pred CCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCCCCcceEEEEEecHHHHHHHH
Confidence 98889877777764 3 378889999999999999964 4899999999998764
No 33
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.51 E-value=1.5e-13 Score=143.86 Aligned_cols=272 Identities=11% Similarity=0.046 Sum_probs=163.6
Q ss_pred hhhHHHHHHHHHHHHC--------CCeEeec-cceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHH
Q psy15928 2 PLNKLSDQLRGDIAQA--------GFTEVLT-FALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPG 67 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~--------Gf~Evit-ysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpg 67 (485)
|+..++++|.+++.++ ||+=+-. .+.++....++.+++|.+. .+...| | +.-+|||+--+.
T Consensus 43 Pl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~----~~~lLRTHTSa~ 117 (460)
T TIGR00469 43 PLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N----EQHLLRAHTSAH 117 (460)
T ss_pred cHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c----CCceeCCCCcHH
Confidence 7889999999999998 7743322 1467777788999988764 135566 3 467999999999
Q ss_pred HHHHHHHhcCCCCCe--eEEEeCcEEecCCccccccccceEEEEEEecCCCC---hhH-------hhhhHHHHHHhhCCC
Q psy15928 68 LLKTLAANKKMPLPL--KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG---FEI-------IHGLLDRVMQLLQIP 135 (485)
Q Consensus 68 LLe~~~~N~~~~~~~--rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~---~~~-------~~~~~~~~~~~~~~~ 135 (485)
..+.++.+...+.++ ++.-.|+||+++.-+..+....+.+-+++-.+... |.. ++.-++++-..+...
T Consensus 118 q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (460)
T TIGR00469 118 ELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRKRTKADLFEKEPGYIEKFEEDIRGTEADLNKE 197 (460)
T ss_pred HHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEeccccccccccccchhhhhhhhhhhcccccccc
Confidence 999999775432344 49999999999875444444444554433332100 000 000001000000000
Q ss_pred ---C---ccccccccccccchhh-hhc--CCCCCHHHHHHHHHHHHHHh-CCCC-----------CCCCceEEeeCCCCC
Q psy15928 136 ---L---DKTEGYCARNQRNLVA-VYY--NKSPGFEIIHGLLDRVMQLL-QIPL-----------DKTEGYCIQAADNAT 194 (485)
Q Consensus 136 ---~---~~~~~~~~~~~~~~~~-~~~--~~~~~f~~lKg~ve~ll~~l-gi~~-----------~~~~~~~~~~~~~~~ 194 (485)
. +.+..-... ++.. ++. ..+....+||+.++.++..+ |-+. ....+++|++...|+
T Consensus 198 ~~~i~~~~~~~~~~~~---~~~q~~~~~~~~~~~~~~LK~~L~~~~~~lFg~~~~~~~~~~~~~~~~~~~~r~~ps~fPf 274 (460)
T TIGR00469 198 NVKIILDDDSIPLKEN---NPKQEYASDLAVDLCEHELKHSIEGITKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPF 274 (460)
T ss_pred CcceeccCcccccccc---cchhhhccHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccccCccceEEEEeccCCC
Confidence 0 000000000 0000 000 00011278999999998886 4211 000146788888899
Q ss_pred ccCCceEEEEECCE--EEEEEEeeCHHHHHhCCCCCC---EEEEEeccccccccccccCCCCccccc------cc----c
Q psy15928 195 FFPQRCANVMLRGS--KIGTMGVLHPEVLGKFELTLP---CSILEINIEPFNFAKMLYSPFNSCFSS------QT----H 259 (485)
Q Consensus 195 ~hpgrsa~I~~~g~--~iG~iG~lhP~vl~~~di~~~---v~~~Ei~ld~L~~~~~~~~~~s~~~~s------~~----~ 259 (485)
.+|+..++|.++|+ .||.+|.+||+++++.|++.+ .++|+++||+|...+-....+.-|-+. |- .
T Consensus 275 tePs~evdi~~~g~WiEi~gcG~v~p~vl~~~g~~~~~~~g~AfGiGleRlaMl~~gi~DiR~~~~~d~rfl~qf~~~~~ 354 (460)
T TIGR00469 275 TAPSWEIEIWFKDEWLELCGCGIIRHDILLRAGVHPSETIGWAFGLGLDRIAMLLFDIPDIRLFWSNDEGFLRQFSEGDL 354 (460)
T ss_pred CCcceEEEEEECCeeEEEeeeccCcHHHHHHcCCCccceEEEEEEecHHHHHHHHcCccHHHHHhcccHHHHHhhccccc
Confidence 99999999999998 899999999999999999865 489999999995433222222111111 10 1
Q ss_pred cccccccccccCCCCCceeecCCCcc
Q psy15928 260 SQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 260 ~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
.+..+|.++ |+||.+.+|-..+
T Consensus 355 ~~~~~fkpi----SKfP~v~RDISfv 376 (460)
T TIGR00469 355 HLIPKFKPI----SHHPGCFNDLAFW 376 (460)
T ss_pred ccccccCcC----CCCCCccccEEEE
Confidence 123445555 9999888877643
No 34
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4e-13 Score=136.01 Aligned_cols=193 Identities=19% Similarity=0.195 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 76 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~ 76 (485)
|+..+.+++++.+.++||+|+-..-..+.-+.++++++|.++ .+...+.+ +.+..+|||+-.|--...+..|.
T Consensus 112 pl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~--~~~~~lLRTHTs~vq~R~l~~~~ 189 (335)
T COG0016 112 PLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKD--DREKLLLRTHTSPVQARTLAENA 189 (335)
T ss_pred hHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcC--CCCceeecccCcHhhHHHHHhCC
Confidence 788999999999999999999988666676777888887654 23566655 33367999999999998888875
Q ss_pred CCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcC
Q psy15928 77 KMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYN 156 (485)
Q Consensus 77 ~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (485)
.. ++|+|-+|+||+.+..+.++..+.+.+-+++.++
T Consensus 190 ~~--P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~------------------------------------------ 225 (335)
T COG0016 190 KI--PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDK------------------------------------------ 225 (335)
T ss_pred CC--CceEecccceecCCCCCcccchheeeeEEEEEeC------------------------------------------
Confidence 33 8999999999998865555444444554444433
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECC---E-EEEEEEeeCHHHHHhCCCC-CC--
Q psy15928 157 KSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRG---S-KIGTMGVLHPEVLGKFELT-LP-- 229 (485)
Q Consensus 157 ~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g---~-~iG~iG~lhP~vl~~~di~-~~-- 229 (485)
..+|-+|||+++.++..++-... +++|+++-.|+..|.-..+|++.+ + .||=.|.+||+|++..|+. .+
T Consensus 226 -~~s~~~Lkg~L~~f~~~~fg~~~---~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~ 301 (335)
T COG0016 226 -NISFADLKGTLEEFAKKFFGEDV---KVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYS 301 (335)
T ss_pred -CccHHHHHHHHHHHHHHhcCCCc---ceEeecCCCCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCCCCcce
Confidence 35788999999999999874321 488999888988899888888864 3 5777999999999999954 44
Q ss_pred EEEEEeccccccccc
Q psy15928 230 CSILEINIEPFNFAK 244 (485)
Q Consensus 230 v~~~Ei~ld~L~~~~ 244 (485)
.++|.+.+|+|...+
T Consensus 302 GfAfGlGlERlAMLk 316 (335)
T COG0016 302 GFAFGLGLERLAMLK 316 (335)
T ss_pred EEEEeecHHHHHHHH
Confidence 469999999998764
No 35
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3e-11 Score=121.67 Aligned_cols=193 Identities=18% Similarity=0.325 Sum_probs=148.6
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC------------CCCcEE---------------------
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME------------DIPAVH--------------------- 48 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~------------~~~~v~--------------------- 48 (485)
|++....++|+....+||.|++|.-.++.+...+.||-... .+..|-
T Consensus 48 pl~~TIq~lReAYLr~GF~EmvNPlivde~evykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d~~de~~ 127 (536)
T COG2024 48 PLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGIDEPDEKV 127 (536)
T ss_pred cHHHHHHHHHHHHHHhhHHHhcCccccCHHHHHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCCCchhhH
Confidence 78899999999999999999999999999887777763210 000000
Q ss_pred -----------------------eeC------------------------CCchhhhhhhhhchHHHHHHHHHhcCCC-C
Q psy15928 49 -----------------------IGN------------------------PKTLEFQIARTTLVPGLLKTLAANKKMP-L 80 (485)
Q Consensus 49 -----------------------I~N------------------------Pls~e~s~LR~SLlpgLLe~~~~N~~~~-~ 80 (485)
|++ |.| ..-+||.+++.|+.-+++.=+.+. .
T Consensus 128 e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~s-~tlTLRSHMTsGWFItLs~i~~r~~~ 206 (536)
T COG2024 128 ERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPES-STLTLRSHMTSGWFITLSEILKREDP 206 (536)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHhccCcchHHHHHHHhChHHhhcCCCC-CceehhhhcccceeeeHHHHHhccCC
Confidence 111 332 255799999999999999988874 5
Q ss_pred CeeEEEeCcEEecCCcccc-ccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEV-GARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
+++||.|.|||++++..+. +....+..++++.++. +
T Consensus 207 PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~-------------------------------------------v 243 (536)
T COG2024 207 PLKLFSIDRCFRREQREDASHLMTYHSASCVVVDED-------------------------------------------V 243 (536)
T ss_pred CceeeehhHHhhhhhhcchhhhhhhccceEEEEcCc-------------------------------------------c
Confidence 8999999999998654321 1223445666666543 2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCC--CCccCCceEEEEE-------------CCE-EEEEEEeeCHHHHHh
Q psy15928 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADN--ATFFPQRCANVML-------------RGS-KIGTMGVLHPEVLGK 223 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~--~~~hpgrsa~I~~-------------~g~-~iG~iG~lhP~vl~~ 223 (485)
...+.|+++|.+|+.+|+. +|.|++++. ++|.|+.+.+++. +|+ .|.++|..+|..|.+
T Consensus 244 tvD~GKaVAEglL~qfGFe-----~F~FrpDEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALae 318 (536)
T COG2024 244 TVDDGKAVAEGLLRQFGFE-----KFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAE 318 (536)
T ss_pred cccccHHHHHHHHHHhCcc-----ceeeccccccccccCCCccceEEEecccccccccccCCCcEEEEeecccChHHHHH
Confidence 3457899999999999997 489988754 7888998888875 243 689999999999999
Q ss_pred CCCCCCEEEEEecccccccc
Q psy15928 224 FELTLPCSILEINIEPFNFA 243 (485)
Q Consensus 224 ~di~~~v~~~Ei~ld~L~~~ 243 (485)
|||+.||.-..+..++|...
T Consensus 319 Y~Id~pVMNLGlGVERlaMI 338 (536)
T COG2024 319 YGIDYPVMNLGLGVERLAMI 338 (536)
T ss_pred cCCCCceeecchhHHHHHHH
Confidence 99999999999999999764
No 36
>KOG2784|consensus
Probab=98.66 E-value=1.7e-07 Score=94.56 Aligned_cols=188 Identities=19% Similarity=0.199 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhh-hHHHhcccCC-----CCCcEEeeCCCchh-------------------
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDD-VSVKLRQKME-----DIPAVHIGNPKTLE------------------- 56 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~-~~~~~~~~~~-----~~~~v~I~NPls~e------------------- 56 (485)
|+-+++...|+++..+||+|+-|..|+.... .++++-.|.. ..+..-|.+|...+
T Consensus 213 PLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~y 292 (483)
T KOG2784|consen 213 PLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGY 292 (483)
T ss_pred hHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCc
Confidence 7889999999999999999999999996542 2233322221 12467888887665
Q ss_pred ---------------hhhhhhhchHHHHHHHHHhcCC-CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhH
Q psy15928 57 ---------------FQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEI 120 (485)
Q Consensus 57 ---------------~s~LR~SLlpgLLe~~~~N~~~-~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~ 120 (485)
..+|||+-..---+.+.+=.+. -.+.|+|.|.|||+.+.-+.++.-|.+.+-+++++.
T Consensus 293 gs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~------ 366 (483)
T KOG2784|consen 293 GSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADK------ 366 (483)
T ss_pred CCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecC------
Confidence 5688887654433333333233 358999999999997654433333333444444432
Q ss_pred hhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCce
Q psy15928 121 IHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRC 200 (485)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrs 200 (485)
....-++-|+++.++..+|+.. +.++|..+|+-||.--
T Consensus 367 -------------------------------------gltLgdLig~l~~ff~~lg~tn-----lrfKPaynpYtepsme 404 (483)
T KOG2784|consen 367 -------------------------------------GLTLGDLIGILMEFFTKLGATN-----LRFKPAYNPYTEPSME 404 (483)
T ss_pred -------------------------------------CCcHHHHHHHHHHHHhccCCcc-----ccccCCCCCCCCceeE
Confidence 3456789999999999999863 6788887787777532
Q ss_pred EEEEECC----EEEEEEEeeCHHHHHhCCCCCCEEEEEecc
Q psy15928 201 ANVMLRG----SKIGTMGVLHPEVLGKFELTLPCSILEINI 237 (485)
Q Consensus 201 a~I~~~g----~~iG~iG~lhP~vl~~~di~~~v~~~Ei~l 237 (485)
.-.+-.| ..+|--|..||..+.-+|++.++.+.--++
T Consensus 405 if~yh~gl~kwvEvgnSg~frPeml~pMGLp~Dv~vl~~gl 445 (483)
T KOG2784|consen 405 IFSYHHGLFKWVEVGNSGMFRPEMLLPMGLPMDVVVLAWGL 445 (483)
T ss_pred EEEeccccceEEEEcCCCCCCHhHhhccCCCccceeeeecc
Confidence 2222233 268999999999999999997765544444
No 37
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....
Probab=98.51 E-value=1.4e-07 Score=88.33 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=48.2
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEeeccCh--------------------------HhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDL--------------------------TKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~--------------------------~~~~~al~~~~ 326 (485)
+..|+++|++++ ++++|||++.+|+|+++|++||+|++++|+ ..+..|+++++
T Consensus 88 ~~~~vi~D~~~~-i~~~gi~~~~~t~i~~~T~~ilie~~~~~~~~i~~~~~~~~l~t~~~~r~~k~~~~~~~~~a~~~~~ 166 (174)
T PF03483_consen 88 EGDLVICDDNGI-ISIAGIIGSERTKITENTKNILIEVAGFDPKSIRKSSKKLKLRTDASYRYEKGIDPNLLLNALNRAT 166 (174)
T ss_dssp TTCEEEECTTCE-EEETTTEEBSTTC--TT--EEEEEEEES-HHHHHHHHHHTT---HHHHHHHH-S-TTCHHHHHHHHH
T ss_pred ceEEEEEECCCC-EeeccccCCccceeEcCCCeEEEEEeecCHHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 578999999996 699999999999999999999999998665 45556888888
Q ss_pred HHHHhhcC
Q psy15928 327 TMFSQYCE 334 (485)
Q Consensus 327 ~L~~~~~g 334 (485)
+||.++||
T Consensus 167 ~ll~~~~g 174 (174)
T PF03483_consen 167 SLLLEICG 174 (174)
T ss_dssp HHHHHHST
T ss_pred HHHHHHcC
Confidence 88888875
No 38
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.62 E-value=0.0042 Score=61.75 Aligned_cols=225 Identities=15% Similarity=0.172 Sum_probs=136.5
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLP 81 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~ 81 (485)
.+.+++++++.+...||.|+.|..|...+.. ...+........+++..+ +.+.-+||+-++|++...++.|... ..+
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~-~~~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELF-LRKSGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHh-cccccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 3568889999999999999999999876642 222111122346788776 3456799999999999999988553 568
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCCCccccccccccccchhhhhc----
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYY---- 155 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 155 (485)
+|+|.+|+||+.+.......+|.+.+++=+.|.... -.++-.+..+.++.++++ .|.- .-+++..+.
T Consensus 83 ~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~-----~~~i--~l~~~~i~~~l~~ 155 (261)
T cd00773 83 LKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK-----DFQI--KINHRGILDGIAG 155 (261)
T ss_pred eEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC-----ceEE--EECCHHHHHHHhh
Confidence 999999999997643222245555666656665322 233455556677777754 1100 001111111
Q ss_pred CCCC---------------CHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCC--CccCCceEEEEECC----EEEEEEE
Q psy15928 156 NKSP---------------GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNA--TFFPQRCANVMLRG----SKIGTMG 214 (485)
Q Consensus 156 ~~~~---------------~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~--~~hpgrsa~I~~~g----~~iG~iG 214 (485)
.... ...+++.++ .+++.+|+.. .+.+...... .|+-|---+++..+ ..|+-=|
T Consensus 156 ~~~~~~~~~~~l~~~l~~~~l~~l~~l~-~~l~~~~~~~----~i~~d~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~GG 230 (261)
T cd00773 156 LLEDREEYIERLIDKLDKEALAHLEKLL-DYLEALGVDI----KYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGG 230 (261)
T ss_pred ccCCCHHHHHHHHHHhhHHHHHHHHHHH-HHHHHcCCCc----eEEEcCccccCCcccCceEEEEEECCCCccCeEeecc
Confidence 0001 111222222 2345556421 2555544322 23456666666653 5688889
Q ss_pred eeCHHHHHhC-CCCCCEEEEEeccccccc
Q psy15928 215 VLHPEVLGKF-ELTLPCSILEINIEPFNF 242 (485)
Q Consensus 215 ~lhP~vl~~~-di~~~v~~~Ei~ld~L~~ 242 (485)
+.+- ++++| +-+.|.+.|-+++|+|..
T Consensus 231 RYD~-L~~~f~~~~~~avGfa~~~d~l~~ 258 (261)
T cd00773 231 RYDG-LLEEFGGEDVPAVGFAIGLERLLL 258 (261)
T ss_pred CHHH-HHHHhCCCCCCeEEEEEcHHHHHH
Confidence 8884 55554 556689999999999864
No 39
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=97.29 E-value=0.00048 Score=63.81 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=39.2
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEeeccChHhHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAK 319 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~ 319 (485)
+..+++.|++++ ++++|+||+.+++|+++|+++++|++.+++..++
T Consensus 88 ~~~~vi~d~~~~-~~i~g~~g~~~~~~~~~t~~i~~~~~~~~~~~i~ 133 (174)
T smart00873 88 EGDLVIADDEGP-LALAGVMGGEESEVTENTTNIFLEPAIFSPRTIR 133 (174)
T ss_pred CCCEEEEeCCcC-EEEEEEecCCcceecCCCCEEEEEEEEeCcHHHH
Confidence 346889998885 8999999999999999999999999976665543
No 40
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.27 E-value=0.0015 Score=69.08 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHh-cccC--CCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKL-RQKM--EDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP 79 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~~--~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~ 79 (485)
.+.+++++++.+...||.|+.|..|...+.. ... +... .....+++..+ +.+.-+||+-+++++...++.|..
T Consensus 21 ~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~-~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~-- 96 (412)
T PRK00037 21 WQYVEDTIREVFERYGFSEIRTPIFEYTELF-KRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL-- 96 (412)
T ss_pred HHHHHHHHHHHHHHcCCeEeeccccchHHHh-ccccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC--
Confidence 4678899999999999999999999765432 221 2111 02346777777 666779999999999999998754
Q ss_pred CCeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 80 LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
.++|+|++|+||+.+.......+|....++=+.|.... -.++-.+..+.++.+|++
T Consensus 97 ~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 97 QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK 154 (412)
T ss_pred CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 68999999999987543222234555666666664322 234455556677777764
No 41
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.08 E-value=0.0077 Score=63.66 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
+.+++++++.+...||.|+.|..|-..+.+....+.. .+...+++..+.+.+.-.||+=+++++.+.++.|.+...+.|
T Consensus 25 ~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~-~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~p~R 103 (392)
T PRK12421 25 ERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQD-LKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNREGVAR 103 (392)
T ss_pred HHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCcc-chhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCCCceE
Confidence 4678999999999999999999996543211111211 123467888886556678999999999999888765455899
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
+|-+|+||+.+.......+|.+.+++=+.|.... --++-.+..+.+..+|++
T Consensus 104 ~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~ 157 (392)
T PRK12421 104 LCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP 157 (392)
T ss_pred EEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 9999999985432211235566777777775432 234445555677777764
No 42
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.06 E-value=0.0048 Score=65.06 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC---CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME---DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM- 78 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~---~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~- 78 (485)
.+++++++++.+...||.|+.|..|...+.. ........ .+..+++..+ +.+.-+||+-+++++...++.|.+.
T Consensus 17 ~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~-~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~ 94 (397)
T TIGR00442 17 WQYIEETIREVFELYGFKEIRTPIFEYTELF-ARKVGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENKLLL 94 (397)
T ss_pred HHHHHHHHHHHHHHcCCeEecCcccchHHHh-hhccCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhccccc
Confidence 4578899999999999999999999876532 22111111 1245666665 4566789999999999999888554
Q ss_pred CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCCh--hHhhhhHHHHHHhhCCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGF--EIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~--~~~~~~~~~~~~~~~~~ 135 (485)
..++|+|.+|+||+.+.......+|...+++=+.|..... .++-.+..+.++.+|++
T Consensus 95 ~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~ 153 (397)
T TIGR00442 95 PKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK 153 (397)
T ss_pred CCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4689999999999965432222455556666666654322 24445556677777764
No 43
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.06 E-value=0.022 Score=57.87 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc-CC-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK-KM-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~-~~-~~ 80 (485)
+.+++.+++.+...||+|+.|..+...+.. ..-+. +...++..++.. ..+.-+|||.-.|++....+.+. +. ..
T Consensus 34 ~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~~L 110 (298)
T cd00771 34 NELEDFLRELQRKRGYQEVETPIIYNKELW-ETSGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYRDL 110 (298)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeecCHHHH-hhCCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchhhC
Confidence 467788899999999999999999988753 44332 111223455521 22455899999999988887764 33 46
Q ss_pred CeeEEEeCcEEecCCcccc-c---cccceEEEEEEecCCCC----hhHhhhhHHHHHHhhCCCCccccccccccccchhh
Q psy15928 81 PLKLFEISDIVYKDATAEV-G---ARNQRNLVAVYYNKSPG----FEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVA 152 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~---~~e~~~l~~~l~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (485)
++|++++|+||+.+....+ + .+|.+...+-+.+.... +.++.....++++.+|++. ..-..+.+. +
T Consensus 111 Plr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~-~~i~l~~~~-----~ 184 (298)
T cd00771 111 PLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD-YKVELSTRP-----E 184 (298)
T ss_pred CeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCc-EEEEEEcCh-----h
Confidence 8999999999998754321 1 23433444433332211 3346666777888888751 111111110 1
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEEC---CE--EEEEEEeeCHHHHHhCCCC
Q psy15928 153 VYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLR---GS--KIGTMGVLHPEVLGKFELT 227 (485)
Q Consensus 153 ~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~---g~--~iG~iG~lhP~vl~~~di~ 227 (485)
-+......+....+.+..++...|++ ++..+.+-.+|-| ..++.+. |+ .+|++= +.-...++|||.
T Consensus 185 ~~~~d~e~W~~a~~~l~e~l~~~~~~------~~~~~g~~afygp--kid~~~~d~~gr~~q~~t~q-ld~~~~~~f~l~ 255 (298)
T cd00771 185 KFIGSDEVWEKAEAALREALEEIGLP------YEINEGEGAFYGP--KIDFHVKDALGREWQCSTIQ-LDFNLPERFDLT 255 (298)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhCCCC------ceECCCCcccccc--eEEEEEEeCCCCeeecceeE-eeccChhhcCCE
Confidence 11011112334445566666667764 4555555565544 4666654 43 344433 444445666654
No 44
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=97.04 E-value=0.0021 Score=59.73 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHH-HCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC---
Q psy15928 4 NKLSDQLRGDIA-QAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM--- 78 (485)
Q Consensus 4 ~~~~~klr~~L~-~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~--- 78 (485)
+.+.+.+++.+. ..||+|+.+..|.+.+.. +.-|.... ....+++.+.-. +.-+||++.-|++...++.....
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~-~~sg~~~~~~~~~~~~~~~~~-~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSEVW-EKSGHWDNFSDEMFKVKDRGD-EEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHHHH-HHHSHHHHHGGGSEEEEETTT-EEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehHHh-hhccccccccCCeeeeeeccc-ccEEeccccccceeeeecceeeeccc
Confidence 467888999999 999999999999998864 55543111 123677766543 44599999999999999998443
Q ss_pred CCCeeEEEeCcEEecCCccccc---cccceEEEEEEecCC----CChhHhhhhHHHHHHhhCC-C
Q psy15928 79 PLPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKS----PGFEIIHGLLDRVMQLLQI-P 135 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~----~~~~~~~~~~~~~~~~~~~-~ 135 (485)
..++++|++|++|+.+.....| .+|.+..-+...+.. ..+..+.....++++.||+ +
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~ 145 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEP 145 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGC
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCce
Confidence 4689999999999987422212 345556666666654 1277778888888888888 5
No 45
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.97 E-value=0.0061 Score=61.93 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
+.+++++++.+...||.|+.|..|...+......+ .+.+..+++..+ +.+.-+||+=+++++.+.+++|.+...+.|
T Consensus 14 ~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~--~~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~~~~~~r 90 (311)
T PF13393_consen 14 ERIESKLREVFERHGYEEIETPLLEYYELFLDKSG--EDSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLNLPRPKR 90 (311)
T ss_dssp HHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSS--TTGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCGSSSSEE
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccc--cchhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcCcCCCce
Confidence 56789999999999999999999987654322221 122367899988 888899999999999999999965556899
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHH-hhCC
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQ-LLQI 134 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~-~~~~ 134 (485)
+|-+|+||+........+.|...+++=+.|.... --++-.+..+.++ .+++
T Consensus 91 ~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~ 144 (311)
T PF13393_consen 91 YYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGL 144 (311)
T ss_dssp EEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999997543222245666777767775421 2234444445665 6665
No 46
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.92 E-value=0.011 Score=62.53 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~~ 82 (485)
+.+++++++.+...||.|+.|..|-..+......+. ...+..+++..+.+...-+||+=+++++.+.++.+.++ ..++
T Consensus 21 ~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~-~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 99 (391)
T PRK12292 21 EEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA-ILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGPL 99 (391)
T ss_pred HHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc-cchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCCe
Confidence 467889999999999999999999865532111111 11234677776655667799999999999999988654 4589
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
|+|.+|+||+.+.......+|.+.+++=+-|.... --++-.+..+.+..+|++
T Consensus 100 r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~ 154 (391)
T PRK12292 100 RLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP 154 (391)
T ss_pred EEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999996543211245555666656564322 234455555667777764
No 47
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=96.83 E-value=0.014 Score=59.78 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLP 81 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~ 81 (485)
.+.+++++++.+...||.|+.|..|-..+.. ...+.. .....+++..+- .+.-+||+=+++++...++.+.+. ..+
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~-~~~~~~-~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~p 87 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYLDTL-SAGGGI-LNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPLP 87 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhHHHh-cccCCc-chhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCCC
Confidence 3567888999999999999999888876542 211111 123467777663 456789999999999998887543 468
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
.|+|.+|+||+.+......++|.+..++=+.|.... --++-.+..+.++.+|++ .|.-.
T Consensus 88 ~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~-----~~~i~-------------- 148 (314)
T TIGR00443 88 LRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLK-----DFKIE-------------- 148 (314)
T ss_pred eEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCC-----CeEEE--------------
Confidence 999999999996553222245555555555554321 234444455566777654 11110
Q ss_pred CHHHHHHHHHHHHHHhCCC
Q psy15928 160 GFEIIHGLLDRVMQLLQIP 178 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~ 178 (485)
..-.++++.+++.++++
T Consensus 149 --l~~~~il~~il~~~~~~ 165 (314)
T TIGR00443 149 --LGHVGLVRALLEEAGLP 165 (314)
T ss_pred --eCcHHHHHHHHHHcCCC
Confidence 01237888888888875
No 48
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=96.73 E-value=0.017 Score=61.84 Aligned_cols=130 Identities=11% Similarity=0.075 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC--CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME--DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-P 79 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~--~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~ 79 (485)
+.+++++++.+...||.|+.|..|-..+-+....|-..+ .+..+++..+ +.+.-+|||=++|++...++.|.. . .
T Consensus 22 ~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~~~ 100 (430)
T CHL00201 22 QFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDYHS 100 (430)
T ss_pred HHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC-CCCEEEeCCCCcHHHHHHHHHccccccC
Confidence 467889999999999999999999976643122221111 1346677655 445668999999999999777643 3 3
Q ss_pred CCeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCC
Q psy15928 80 LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQI 134 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~ 134 (485)
.++|+|++|+||+.+.......+|.+..++=+.|.... -.++-.+..+.+..+|+
T Consensus 101 ~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl 157 (430)
T CHL00201 101 NLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQV 157 (430)
T ss_pred CCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCC
Confidence 57899999999986542211134445555555564321 12333333444555554
No 49
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=96.55 E-value=0.015 Score=56.34 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhc-ccCCCCCcEEeeCCC---chhhhhhhhhchHHHHHHHHHhcCC-
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEDIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKKM- 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~-~~~~~~~~v~I~NPl---s~e~s~LR~SLlpgLLe~~~~N~~~- 78 (485)
+.+++.+++.+...||+|+.+..+...+.. ..-+ .........++..+- ..+.-+|||...+++...++.+...
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~ 84 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTVLF-FKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSY 84 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHHHH-hhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccc
Confidence 567888999999999999999999987753 4333 111112344555442 1345689999999999998877543
Q ss_pred -CCCeeEEEeCcEEecCCccc--c-ccccceEEEEEEecC
Q psy15928 79 -PLPLKLFEISDIVYKDATAE--V-GARNQRNLVAVYYNK 114 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~~~~--~-~~~e~~~l~~~l~G~ 114 (485)
..++|++++|+||+.+.... . ...|.+...+.+.|.
T Consensus 85 ~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~ 124 (235)
T cd00670 85 RALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGE 124 (235)
T ss_pred hhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcC
Confidence 45899999999999765421 1 123444555555553
No 50
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.53 E-value=0.033 Score=59.34 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccC-CCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~-~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~ 82 (485)
+.+++++++.+...||.|+.|..|-..+.+....+... ..+..+++..+ +...=+||+=+++++.+.++.|.+...++
T Consensus 22 ~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~~p~ 100 (423)
T PRK12420 22 NKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIRLPF 100 (423)
T ss_pred HHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCCCCe
Confidence 46788999999999999999999986553211111111 11346788777 45566899999999999999885444589
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
|+|.+|+||+.+.......+|...+++=+.|.... -.++-.+.-+.++.+|+.
T Consensus 101 r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~~ 155 (423)
T PRK12420 101 KRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNLE 155 (423)
T ss_pred eEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCCC
Confidence 99999999996532111234555555555553211 234444444566666654
No 51
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.42 E-value=0.046 Score=55.17 Aligned_cols=119 Identities=9% Similarity=0.103 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~~ 82 (485)
+.+++++++.+...||.|+.|..|-.- +.+... ..+..+++..+ +.+.-+||+=+++++.+.++.|.++ ..++
T Consensus 23 ~~i~~~l~~vf~~~Gy~~I~tP~lE~~----e~~~~~-~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 23 REIENVASEILYENGFEEIVTPFFSYH----QHQSIA-DEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHHHHHcCCeEeeccceeeh----hhhccc-chhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 467888999999999999999999643 333221 22356788776 5667799999999999999888653 5589
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 135 (485)
|+|-+|+||+.+. +|.+.+++=+.|... ..++-.+..+.++.+|++
T Consensus 97 r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~-~~Evi~la~~~l~~lgl~ 142 (281)
T PRK12293 97 KWFYIQPVFRYPS------NEIYQIGAELIGEED-LSEILNIAAEIFEELELE 142 (281)
T ss_pred eEEEeccEEecCC------CcccccCeEeeCCCC-HHHHHHHHHHHHHHcCCC
Confidence 9999999998542 345556665666543 356666666777878765
No 52
>PLN02530 histidine-tRNA ligase
Probab=96.26 E-value=0.031 Score=60.72 Aligned_cols=130 Identities=18% Similarity=0.086 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~~ 82 (485)
+.+++++++.+...||.|+.|..|-..+-+....+. ...+..+++..+ +.+.=+||+=++|++...++.|... ..++
T Consensus 88 ~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~-~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~ 165 (487)
T PLN02530 88 NWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE-EITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLPL 165 (487)
T ss_pred HHHHHHHHHHHHHcCCEeccccccchHHHhccccCc-ccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCCCe
Confidence 467889999999999999999999875532111121 112346677665 4455699999999999999998654 4689
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
|+|.+|+||+.+.......+|.+.+++=+.|.... ..++-.+....+..+|++
T Consensus 166 r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~lgl~ 220 (487)
T PLN02530 166 KWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGIT 220 (487)
T ss_pred EEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 99999999986542111134555555545553221 334444455566777764
No 53
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.99 E-value=0.14 Score=53.80 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCe
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPL 82 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~ 82 (485)
+..+.+++++.+...||.|+.|..|-..+.+....+.. ..+..+++..+ +...-+||+=+++++.+.+..| +...+.
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~-~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~-~~~~p~ 83 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED-IRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIAT-AGGEPA 83 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch-hhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHc-CCCCCe
Confidence 45678999999999999999999998655321111211 11245677777 3456699999999999987776 334579
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCC---ChhHhhhhHHHHHHhhCCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSP---GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~---~~~~~~~~~~~~~~~~~~~ 135 (485)
|+|=+|+||+.+.+ ..+|.+.+++=+.|... .-.++-.+..+.++.+|++
T Consensus 84 R~~Y~g~VfR~~~g---r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~ 136 (373)
T PRK12295 84 RYAYLGEVFRQRRD---RASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG 136 (373)
T ss_pred EEEEEccEEECCCC---CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC
Confidence 99999999997632 24566677776667421 1334555555667777764
No 54
>PLN02972 Histidyl-tRNA synthetase
Probab=95.89 E-value=0.11 Score=58.95 Aligned_cols=127 Identities=15% Similarity=0.052 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
+.+++++++.+...||.|+.|..|-..+.+....+ .+.+..+++..+ +.+.-+||+=+++++.+.++.|.. .++|
T Consensus 345 e~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~G--ed~k~mY~f~D~-gGr~LaLRPDlTvPiAR~vA~n~~--~p~K 419 (763)
T PLN02972 345 EKAFSIITSVFKRHGATALDTPVFELRETLMGKYG--EDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNGI--TSFK 419 (763)
T ss_pred HHHHHHHHHHHHHcCCEEccCCcccchHHhhcccC--cchhheEEEECC-CCCEEEeCCCChHHHHHHHHhCCC--Ccce
Confidence 46788899999999999999999975443211111 122346677766 345668999999999999999843 3689
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCC---ChhHhhhhHHHHHHhhCCC
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSP---GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~---~~~~~~~~~~~~~~~~~~~ 135 (485)
.|.+|+||+.+.......+|.+.+++=+.|... .-.++-.+..+.+..+|++
T Consensus 420 rYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~ 474 (763)
T PLN02972 420 RYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIG 474 (763)
T ss_pred EEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCC
Confidence 999999998654321124566677776667421 1345555666677888864
No 55
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=95.61 E-value=0.085 Score=59.29 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC--CCC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM--PLP 81 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~--~~~ 81 (485)
+.+++.+++.+...||+|+.|..|.+.+. ++.-|....-.+.+-. .....+.-+|||+-.|++....+..... ..+
T Consensus 278 ~~i~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sG~~~~~~~emy~-~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP 355 (639)
T PRK12444 278 NELEAFLREIQKEYNYQEVRTPFMMNQEL-WERSGHWDHYKDNMYF-SEVDNKSFALKPMNCPGHMLMFKNKLHSYRELP 355 (639)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCChhhhhhhcCe-ecCCCcEEEEccCCCHHHHHHHhCcccChhhCC
Confidence 45788899999999999999999999875 3443321011111221 1334445579999999999999655442 358
Q ss_pred eeEEEeCcEEecCCcccc-c---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCCCccccccccccccchhhh
Q psy15928 82 LKLFEISDIVYKDATAEV-G---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAV 153 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~-~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (485)
+|+|++|.+|+.+....+ | .++.+...+-+.+... .+..+.....++++.||+++...- ..+.+ .+
T Consensus 356 ~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~~~~~--~~r~~----~~ 429 (639)
T PRK12444 356 IRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFEYEVEL--STRPE----DS 429 (639)
T ss_pred ceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEE--ECCcc----cc
Confidence 999999999997653211 1 1232333333334321 244577777888899998732110 00000 00
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEEC
Q psy15928 154 YYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLR 206 (485)
Q Consensus 154 ~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~ 206 (485)
+ +....+......+..++..+|++ |...+..-.+|.| ..++.+.
T Consensus 430 ~-G~~e~~~~~~~~l~~~l~~~~~~------y~~~~~~ga~Y~~--~~e~~~~ 473 (639)
T PRK12444 430 M-GDDELWEQAEASLENVLQSLNYK------YRLNEGDGAFYGP--KIDFHIK 473 (639)
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCCC------ceeccCCcccccc--eEEEEee
Confidence 0 11112344446678888888886 4444432234433 4555543
No 56
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.3 Score=52.13 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC--CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME--DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~--~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~ 80 (485)
+.+++++|+.+...||.|+-|..|-..+......|-..+ .+.......- +...=.||+=+++++...+..|... +.
T Consensus 22 ~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~~ 100 (429)
T COG0124 22 EYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDLPK 100 (429)
T ss_pred HHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhccccccC
Confidence 467889999999999999999999876643222221110 1223344444 4556689999999999999999553 57
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|-+|.||+.+.......+|.+.+++=+.|.... ..++-.+..+.++.+|+.
T Consensus 101 p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~ 157 (429)
T COG0124 101 PLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIG 157 (429)
T ss_pred CeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCC
Confidence 8999999999986543211245566666666665432 455666667788888876
No 57
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=94.72 E-value=0.12 Score=57.24 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC--CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM--PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~--~~ 80 (485)
+.+++.+++.+...||+|+.|..|...+. +..-+.. .-.+...++.. ...+.-+|||.-.|++......+... ..
T Consensus 204 ~~i~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~~~s~~~l 281 (563)
T TIGR00418 204 NLLEDFVRQKQIKYGYMEVETPIMYDLEL-WEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSSLRSYRDL 281 (563)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHHH-HHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCcCCChHHC
Confidence 46788899999999999999999997764 3443321 00122344432 23356689999999999999988542 35
Q ss_pred CeeEEEeCcEEecCCcccc-c---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATAEV-G---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|++|++|+.+..... + .+|.+...+-+.|... .+.++..+..++++.||++
T Consensus 282 P~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~ 344 (563)
T TIGR00418 282 PLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFS 344 (563)
T ss_pred CceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999998744211 1 2344455554544321 1455777778888999987
No 58
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=94.69 E-value=0.15 Score=57.29 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC--CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM--PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~--~~ 80 (485)
+.+++.+++.+...||+|+.|..|.+.+.. ..-|. +.-.+....+... +.+.=+|||...|+.......+... ..
T Consensus 274 ~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~-~~~g~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~r~~~~~~~s~~~l 351 (638)
T PRK00413 274 RELERYIRRKLRKAGYQEVKTPQILDRELW-ETSGHWDHYRENMFPTTES-DGEEYALKPMNCPGHVQIYKQGLRSYRDL 351 (638)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeCCHHHH-HhcCChhhhhhccceeecC-CCcEEEEecCCcHHHHHHHhCcCCChhhC
Confidence 467888999999999999999999988753 43231 1101233444322 4456699999999999998887542 45
Q ss_pred CeeEEEeCcEEecCCccc-cc---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATAE-VG---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~-~~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|++|.||+.+.... .| .+|.+...+-+.|... .+.++..+..++++.||++
T Consensus 352 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~ 414 (638)
T PRK00413 352 PLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE 414 (638)
T ss_pred CceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999999765421 11 2344555555555422 2366777778888999984
No 59
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=94.69 E-value=0.25 Score=54.76 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-C
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-P 79 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~ 79 (485)
.+++++.+++.+...||+|+.+..|...+. ++.-|. +.-..+..++..... +.-+||++--+.+...++.... . .
T Consensus 50 ~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~~-~~l~LrPt~e~~~~~~~~~~~~s~~~ 127 (565)
T PRK09194 50 LRKIENIVREEMNKIGAQEVLMPALQPAEL-WQESGRWEEYGPELLRLKDRHG-RDFVLGPTHEEVITDLVRNEIKSYKQ 127 (565)
T ss_pred HHHHHHHHHHHHHHcCCEEEECcccCcHHH-HhhcCCccccchhceEEecCCC-CEEEECCCChHHHHHHHHhhhhhccc
Confidence 356788899999999999999999987764 343331 101123566765443 3457999776666555555543 2 4
Q ss_pred CCeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC-----ChhHhhhhHHHHHHhhCCCCc
Q psy15928 80 LPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIPLD 137 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~~~ 137 (485)
.++|+|++|.+|+.+.....| .+|.....+-..|... .+..+.....++++.+|+++.
T Consensus 128 LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~ 193 (565)
T PRK09194 128 LPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFR 193 (565)
T ss_pred CCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccE
Confidence 589999999999976222122 2444555555555322 245666677888999998743
No 60
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=94.66 E-value=0.088 Score=58.39 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++.+++.+...||+|+.|..|...+. ++.-|.- ...+....+... ..+.-+|||.-.|++....+.+.. . ..
T Consensus 210 ~~l~~~~~~~~~~~Gy~ev~tP~le~~~l-~~~sg~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~~~l 287 (575)
T PRK12305 210 REIEDYLRKEHLKRGYEFVYTPHIGKSDL-WKTSGHLDNYKENMFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSYRDL 287 (575)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCCcccchhhccccccc-CCceEEEecCCCHHHHHHHhcccCChhhC
Confidence 56788899999999999999999998875 3443321 111233444222 445679999999998888887754 2 45
Q ss_pred CeeEEEeCcEEecCCcccc-c---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATAEV-G---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|++|+||+.+..... + .+|.+...+-+.|... .+.++..+..+++..||++
T Consensus 288 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~ 350 (575)
T PRK12305 288 PLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK 350 (575)
T ss_pred CHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999997654211 1 2344455554444321 2477788888899999986
No 61
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=94.51 E-value=0.38 Score=53.41 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhc---hHHHHHHHHHhcCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTL---VPGLLKTLAANKKM 78 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SL---lpgLLe~~~~N~~~ 78 (485)
.+++++.+|+.|...||+|+.+..|...+. ++.-+. +.-.....++...... .-+||++- +..++....... +
T Consensus 50 ~~~I~~~i~~~~~~~G~~ei~~P~l~~~el-~~~sg~~~~~~~emf~~~dr~~~-~l~LrPT~Ee~~t~~~~~~i~sy-r 126 (568)
T TIGR00409 50 LKKVENIVREEMNKDGAIEVLLPALQPAEL-WQESGRWDTYGPELLRLKDRKGR-EFVLGPTHEEVITDLARNEIKSY-K 126 (568)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccchHHH-HhhcCCCCccchhcEEEecCCCC-EEEEcCCCcHHHHHHHHHHHhhc-c
Confidence 357788899999999999999999998653 344331 1111245677655433 45899973 223333222222 3
Q ss_pred CCCeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC-----ChhHhhhhHHHHHHhhCCCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~~ 136 (485)
..++++|.+|++|+.+.....| .+|.....+-..+... .+..+.....++++.+|+++
T Consensus 127 ~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~ 192 (568)
T TIGR00409 127 QLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDF 192 (568)
T ss_pred ccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4689999999999976221122 2444455555555421 24445566678889999874
No 62
>PLN02908 threonyl-tRNA synthetase
Probab=94.33 E-value=0.41 Score=54.34 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+.+.+|+.+...||+||.|..+.+.+. ++.-|..... .....+ .+..+.-+||++.-|++....+.... . ..
T Consensus 325 ~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~L 401 (686)
T PLN02908 325 NKLMDFIREQYWERGYDEVITPNIYNMDL-WETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVRSYREL 401 (686)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHHH-HhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhccccChhhC
Confidence 46788899999999999999999999885 3554432111 223333 23456678999999999987776644 2 46
Q ss_pred CeeEEEeCcEEecCCcccc-c---cccceEEEEEEecCC----CChhHhhhhHHHHHHhhCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEV-G---ARNQRNLVAVYYNKS----PGFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~---~~e~~~l~~~l~G~~----~~~~~~~~~~~~~~~~~~~~~ 136 (485)
|+|++++|++|+.+....+ | .++.+..-+-+.+.. ..+..+......+++.||+++
T Consensus 402 Plr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~ 465 (686)
T PLN02908 402 PLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTY 465 (686)
T ss_pred CHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 8999999999998765311 1 223233323233321 124456666777888888873
No 63
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=94.32 E-value=0.36 Score=48.23 Aligned_cols=132 Identities=17% Similarity=0.065 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-C-CCcEEeeCCCc---hhhhhhhhhchHHHHHHHHHhcC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-D-IPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANKK 77 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~-~~~v~I~NPls---~e~s~LR~SLlpgLLe~~~~N~~ 77 (485)
.+++++.+++.+...||+|+.+..|...+.. ..-|.... . ++...+...-. ++.-+|||+.-+.+....+.+..
T Consensus 35 ~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~-~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~ 113 (264)
T cd00772 35 LDKIENVLDKMFKEHGAQNALFPFFILASFL-EKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIK 113 (264)
T ss_pred HHHHHHHHHHHHHHcCCeEEECCeeccHHHH-hhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhhhh
Confidence 3567888899999999999999999988753 44442111 1 12233321111 13448999999999988777754
Q ss_pred --CCCCeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC-----ChhHhhhhHHHHHHhhC-CC
Q psy15928 78 --MPLPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP-----GFEIIHGLLDRVMQLLQ-IP 135 (485)
Q Consensus 78 --~~~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~-~~ 135 (485)
+..+++++++|.+|+.+.....| .+|....-+...+... .+..+....++++..|+ +|
T Consensus 114 s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp 182 (264)
T cd00772 114 SWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAID 182 (264)
T ss_pred hhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 34689999999999976322122 2233333333333211 14555555567777777 55
No 64
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=94.21 E-value=0.12 Score=51.40 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC--CCC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MPL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~--~~~ 80 (485)
+.+++.+++.+...||+|+.+..|...+.. +.-|.. .-.++..++...-. +.-+|||+.-+.+...+++... +..
T Consensus 35 ~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~sg~~~~~~~emy~~~d~~~-~~l~LrPt~e~~~t~~~~~~i~s~~~L 112 (255)
T cd00779 35 KKIENIIREEMNKIGAQEILMPILQPAELW-KESGRWDAYGPELLRLKDRHG-KEFLLGPTHEEVITDLVANEIKSYKQL 112 (255)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhcCCccccCcccEEEecCCC-CeEEEecCCcHHHHHHHHhccccHhhC
Confidence 467788888899999999999999987753 433321 11123456644322 2347899866555555544432 245
Q ss_pred CeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC-----ChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|++|++|+.+.....| .+|.....+-..|... .+.++.....++++.||++
T Consensus 113 Plr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~ 175 (255)
T cd00779 113 PLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLP 175 (255)
T ss_pred CHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999999976322112 1233333333334321 1345556667778888887
No 65
>PLN02837 threonine-tRNA ligase
Probab=93.88 E-value=0.45 Score=53.29 Aligned_cols=205 Identities=11% Similarity=0.114 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc-CC-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK-KM-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~-~~-~~ 80 (485)
+.+++-+++.+...||+||.|..+.+.+. .+.-|.-.. ..+..++.+ +.++.=+|||+=-|......+.=. +. ..
T Consensus 251 ~~L~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~~SyrdL 328 (614)
T PLN02837 251 HIIEDSWKKMHFEHGYDLLYTPHVAKADL-WKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKLHSYRDL 328 (614)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccCCHHH-HhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCccCChhHC
Confidence 35666778888889999999999999885 455552111 122334321 223444889998888665544332 22 35
Q ss_pred CeeEEEeCcEEecCCcccc-c---cccc----eEEEEEEec-CC-CChhHhhhhHHHHHHhhCCCCccccccccccccch
Q psy15928 81 PLKLFEISDIVYKDATAEV-G---ARNQ----RNLVAVYYN-KS-PGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNL 150 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~---~~e~----~~l~~~l~G-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (485)
|+|++|+|++|+.+..+.. | .++. .|. +.+. .. ..+..+.....++++.||+++.+ -.++.+.
T Consensus 329 Plr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~--f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~-~~~~t~~---- 401 (614)
T PLN02837 329 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI--FCLEDQIKDEIRGVLDLTEEILKQFGFSKYE-INLSTRP---- 401 (614)
T ss_pred CHhhEeecccccCCCCCCCcCcccccceEECeEEE--EeCHHHHHHHHHHHHHHHHHHHHHcCCCeEE-EEecCCc----
Confidence 8999999999998753211 1 1111 121 1111 10 12677778888888999987210 1111110
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECC---E--EEEEEEeeCHHHHHhCC
Q psy15928 151 VAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRG---S--KIGTMGVLHPEVLGKFE 225 (485)
Q Consensus 151 ~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g---~--~iG~iG~lhP~vl~~~d 225 (485)
..+ .+....+......++.++...|+. +.+.+....+|-|- .++.+.+ + .+|+++ +.=..-++|+
T Consensus 402 ~~~-~g~~~~w~~~~~~l~~~l~~~~~~------~~~~~g~~afygpk--id~~~~d~~gr~~q~~tiq-ldf~~~~~f~ 471 (614)
T PLN02837 402 EKS-VGSDDIWEKATTALRDALDDKGWE------YKVDEGGGAFYGPK--IDLKIEDALGRKWQCSTIQ-VDFNLPERFD 471 (614)
T ss_pred hhc-cCCHHHHHHHHHHHHHHHHHcCCC------ceeCCCcccccCcc--eeeEeeccCCceeeeccee-EeecchhhcC
Confidence 010 111123556667788888888875 45555445555443 4555533 2 345544 3333445665
Q ss_pred CC
Q psy15928 226 LT 227 (485)
Q Consensus 226 i~ 227 (485)
+.
T Consensus 472 l~ 473 (614)
T PLN02837 472 IT 473 (614)
T ss_pred cE
Confidence 53
No 66
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=93.71 E-value=0.54 Score=47.22 Aligned_cols=108 Identities=14% Similarity=0.012 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|+.|...||.||-|..+++..- +. ....+.+..--......||+|---.+-..++.+. -|+
T Consensus 6 ~i~~~ir~~f~~~gf~ev~tP~l~~~~~--~~------~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~-----~~v 72 (269)
T cd00669 6 KIIKAIRDFMDDRGFLEVETPMLQKITG--GA------GARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL-----DRV 72 (269)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEeccCC--cc------ccceEEeeecCCCCcEEeecCHHHHHHHHHhcCC-----CcE
Confidence 5678999999999999999999985431 10 1122334211123445777665554333343433 289
Q ss_pred EEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHH
Q psy15928 85 FEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDR 127 (485)
Q Consensus 85 FEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~ 127 (485)
|+||+||+.++.+..+..|.+.+-+-+... +++++....++
T Consensus 73 f~i~~~fR~e~~~~~hl~EF~~le~e~~~~--~~~dvm~~~e~ 113 (269)
T cd00669 73 FEINRNFRNEDLRARHQPEFTMMDLEMAFA--DYEDVIELTER 113 (269)
T ss_pred EEEecceeCCCCCCCcccceeEEEEEEecC--CHHHHHHHHHH
Confidence 999999998754333455666776655443 35555555543
No 67
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=93.52 E-value=0.11 Score=57.14 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCC-CcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDI-PAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~-~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++.+|+.+...||+||.|..+.+.+. .+.-|.....+ ....+ -...+.-.|||..-|++....+.... . ..
T Consensus 172 ~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL-~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdL 248 (545)
T PRK14799 172 NELIAFMREINDSMGYQEVYTSHVFKTDI-WKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKPRTYRDL 248 (545)
T ss_pred HHHHHHHHHHHHHcCCeEEECCccchHHH-Hhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhccccChhhC
Confidence 45778899999999999999999877664 34433211111 12222 22345668999999999999887754 3 46
Q ss_pred CeeEEEeCcEEecCCcc
Q psy15928 81 PLKLFEISDIVYKDATA 97 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~ 97 (485)
|+|+||+|+||+.+...
T Consensus 249 PlR~~e~g~vfR~E~sg 265 (545)
T PRK14799 249 PIRFSEFGHVYRWEKKG 265 (545)
T ss_pred CHhhEEecceecCCCCC
Confidence 89999999999987654
No 68
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=93.33 E-value=0.33 Score=49.41 Aligned_cols=127 Identities=18% Similarity=0.130 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc-CC-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK-KM-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~-~~-~~ 80 (485)
+.+++-+++.+...||+|+.+..++..+. .+.-|.-.. .....++.+ +.-+||++--+.+....+... +. ..
T Consensus 56 ~~l~~~~~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~~~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~~L 130 (297)
T cd00770 56 RALINFALDFLTKRGFTPVIPPFLVRKEV-MEGTGQLPKFDEQLYKVEG----EDLYLIATAEVPLAALHRDEILEEEEL 130 (297)
T ss_pred HHHHHHHHHHHHHCCCEEEECcccccHHH-HhhcCcCccChhcccEecC----CCEEEeecCCHHHHHHHhcccCCHhhC
Confidence 35677789999999999999999998875 455553111 223456644 456899999999887766543 33 35
Q ss_pred CeeEEEeCcEEecCCcc---c-cc---cccceEEEEEE-ecCC---CChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATA---E-VG---ARNQRNLVAVY-YNKS---PGFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l-~G~~---~~~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|++|++|+.+... + .| ..|....-+.. +-.. ..|..+.....++++.||++
T Consensus 131 Plr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~ 196 (297)
T cd00770 131 PLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLP 196 (297)
T ss_pred CchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999999976431 1 11 12222222222 1111 12667777777788888877
No 69
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=92.03 E-value=1.1 Score=46.10 Aligned_cols=96 Identities=18% Similarity=0.043 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEee---CCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIG---NPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~---NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
.+.+.+|++|...||.||-|..++.... . +..+...+. +.-...-..|++|--.-|=..++...
T Consensus 27 ~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--~------~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~----- 93 (335)
T PF00152_consen 27 AILQAIREFFDKRGFIEVDTPILTSSTC--E------GGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL----- 93 (335)
T ss_dssp HHHHHHHHHHHHTT-EEE---SEESSSS--S------SSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH-----
T ss_pred HHHHHHHHHHHhCCceEEcCceeecccc--C------ccccccccccchhhhcccceecCcChHHHHhhhccccc-----
Confidence 4678899999999999999999987652 1 112345555 22233455788887665555555443
Q ss_pred eeEEEeCcEEecCCc-cccccccceEEEEEEec
Q psy15928 82 LKLFEISDIVYKDAT-AEVGARNQRNLVAVYYN 113 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G 113 (485)
-|+||||++|+.++. +..+..|.++|-+=+++
T Consensus 94 ~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~ 126 (335)
T PF00152_consen 94 ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF 126 (335)
T ss_dssp SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET
T ss_pred hhhhheecceeccCcccccchhhhhhhhhcccc
Confidence 589999999998765 33344566677665555
No 70
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=90.60 E-value=0.67 Score=46.63 Aligned_cols=88 Identities=11% Similarity=-0.023 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCe
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPL 82 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~ 82 (485)
...+++++++.+...||.|+.|..|-.-+.. . +.-........+...+.+-..-+|||=++|++.+.++.+. ..+.
T Consensus 10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~-~-~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--~~~~ 85 (272)
T PRK12294 10 LKESETAFLKYFNKADYELVDFSVIEKLDWK-Q-LNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--TAAT 85 (272)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCcchhHHhh-h-ccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--CCCc
Confidence 4678999999999999999999999654421 1 1110001123344445677788999999999999987653 2246
Q ss_pred eEEEeCcEEecC
Q psy15928 83 KLFEISDIVYKD 94 (485)
Q Consensus 83 rlFEiG~Vf~~~ 94 (485)
|+|-+|+||+.+
T Consensus 86 Rl~Y~g~VfR~~ 97 (272)
T PRK12294 86 KVAYAGLIIRNN 97 (272)
T ss_pred eEEEeccEeccC
Confidence 999999999854
No 71
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=90.42 E-value=1.1 Score=44.55 Aligned_cols=121 Identities=8% Similarity=0.110 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHCC--CeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC--C-
Q psy15928 4 NKLSDQLRGDIAQAG--FTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M- 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~G--f~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~--~- 78 (485)
+++++.+|+.+...| |.|+.|..+.... +|....... + -..+.-+||+.+.|+.+-.+++... +
T Consensus 36 ~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~----mf~~~~g~~------d-~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 36 NNIKSAWRKSFVLEEEDMLEIDSPIITPEL----MFKTSIGPV------E-SGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeccccCCHH----Hheeeeccc------C-CCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 567888899999885 9999999999874 222210000 0 0123568999999888877766632 2
Q ss_pred CCCeeEEEeCcEEecCCcccc---ccccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEV---GARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~---~~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
..++++++||++|+.+..... ..+|.+...+-+.+... .|..+.....+++..+|++
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~ 168 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQS 168 (254)
T ss_pred CCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCC
Confidence 468999999999997643211 12333333332323211 2667777777888888875
No 72
>PRK06462 asparagine synthetase A; Reviewed
Probab=89.74 E-value=1.4 Score=45.69 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
.+.+.+|++|...||.||-|.-++...+ .-++...+ .++.+ .........+|++|.--- ++.+.... =|
T Consensus 35 ~i~~~iR~ff~~~~f~EV~TP~l~~~~~--~~~~~g~~--~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g~-----~r 104 (335)
T PRK06462 35 SILRYTREFLDGRGFVEVLPPIISPSTD--PLMGLGSD--LPVKQISIDFYGVEYYLADSMILH-KQLALRML-----GK 104 (335)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEecCCC--CCCCcccc--CCccccccccCCCceeeccCHHHH-HHHHHhhc-----Cc
Confidence 4678899999999999999999886422 11111000 01100 001123445788875443 55555332 47
Q ss_pred EEEeCcEEecCCccc---cccccceEEEEEEecCCCChhHhhhhHHH
Q psy15928 84 LFEISDIVYKDATAE---VGARNQRNLVAVYYNKSPGFEIIHGLLDR 127 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~---~~~~e~~~l~~~l~G~~~~~~~~~~~~~~ 127 (485)
+||||++|+.++.+. .+..|.++|-.=+.+. ++.++-...+.
T Consensus 105 VfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~--d~~dlm~~~e~ 149 (335)
T PRK06462 105 IFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGA--DLDEVMDLIED 149 (335)
T ss_pred EEEEeccccCCCCCCCCCCCCCchheeeehhhcC--CHHHHHHHHHH
Confidence 899999999876543 3444555555433432 34555554443
No 73
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=89.67 E-value=3.3 Score=45.44 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=58.4
Q ss_pred HHHHHHHHH-HHHCCCeEeeccceechhhhHHHhcccCCCC-CcEEeeC----------------------------CCc
Q psy15928 5 KLSDQLRGD-IAQAGFTEVLTFALCSRDDVSVKLRQKMEDI-PAVHIGN----------------------------PKT 54 (485)
Q Consensus 5 ~~~~klr~~-L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~-~~v~I~N----------------------------Pls 54 (485)
.+++-+++. ....||+|+++..+++.+.+ +..+...... ....+.. .+.
T Consensus 228 aL~~~i~d~~~~k~Gyeev~~P~Li~~ell-~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~ 306 (517)
T PRK00960 228 AFEKLVIEEVLKPLGFDECLFPKLIPLEVM-YKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLR 306 (517)
T ss_pred HHHHHHHHhhHhhcCCeEEECCcccCHHHH-hhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccc
Confidence 345555555 34569999999999998864 5545322211 2233321 222
Q ss_pred hhhhhhhhhchHHHHHHHHHh-cCC-CCCeeEEE-eCcEEecCCc
Q psy15928 55 LEFQIARTTLVPGLLKTLAAN-KKM-PLPLKLFE-ISDIVYKDAT 96 (485)
Q Consensus 55 ~e~s~LR~SLlpgLLe~~~~N-~~~-~~~~rlFE-iG~Vf~~~~~ 96 (485)
+..-+|||+--|.+....+.= ++. ..++|+|+ .|.||+.+.+
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsG 351 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGG 351 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCC
Confidence 334489999999988776622 333 35899999 7799998754
No 74
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=89.62 E-value=0.69 Score=49.71 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC--CC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 79 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~--~~ 79 (485)
.+++++.+|+.+...||+|+.+..+...+. ++.-|. +.-.++..++... .++.-+|||+-=|.....++.... +.
T Consensus 50 ~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~-~~~~~~L~Pt~e~~~~~~~~~~~~syrd 127 (439)
T PRK12325 50 LKKIENIVREEQNRAGAIEILMPTIQPADL-WRESGRYDAYGKEMLRIKDR-HDREMLYGPTNEEMITDIFRSYVKSYKD 127 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHH-HhhcCCccccchhheEEecC-CCCEEEEcCCCcHHHHHHHHHHhhhchh
Confidence 356788899999999999999999998764 333231 1111234555443 334556888554444444444332 24
Q ss_pred CCeeEEEeCcEEecC
Q psy15928 80 LPLKLFEISDIVYKD 94 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~ 94 (485)
.++|+|++|.+|+.+
T Consensus 128 LPlrl~q~~~~fR~E 142 (439)
T PRK12325 128 LPLNLYHIQWKFRDE 142 (439)
T ss_pred hchHheEecCEecCC
Confidence 689999999999865
No 75
>PRK09350 poxB regulator PoxA; Provisional
Probab=89.58 E-value=2 Score=43.94 Aligned_cols=79 Identities=19% Similarity=0.108 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe--eCCC--chhhhhhhhhchHHHHHHHHHhcCCCC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI--GNPK--TLEFQIARTTLVPGLLKTLAANKKMPL 80 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I--~NPl--s~e~s~LR~SLlpgLLe~~~~N~~~~~ 80 (485)
.+.+.+|+.|...||.||.|..+....- .+. ...++.+ .-|- .....+||+|-=..+=..++.. .
T Consensus 10 ~i~~~ir~~f~~~gf~EV~TP~l~~~~~----~~~---~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~----~ 78 (306)
T PRK09350 10 KIIAEIRRFFADRGVLEVETPILSQATV----TDI---HLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAG----S 78 (306)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEecccC----CCc---cCCceeeeeccccccCCcceEEecCHHHHHHHHhhcc----c
Confidence 5788999999999999999999974221 110 0111211 1110 1233477866333322233322 1
Q ss_pred CeeEEEeCcEEecCC
Q psy15928 81 PLKLFEISDIVYKDA 95 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~ 95 (485)
-|+|+||+||+.++
T Consensus 79 -~rvf~i~~~FR~e~ 92 (306)
T PRK09350 79 -GPIFQICKSFRNEE 92 (306)
T ss_pred -cceEEecceeecCC
Confidence 39999999999765
No 76
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=88.71 E-value=10 Score=42.53 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++-+++.+...||+||.|..+.+.+. .+..+..... .....+.. ..+.-+||++--|++.-..+.... . ..
T Consensus 231 ~~L~~~~~~~~~~~G~~~V~tP~~~~~~~-~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~SyrdL 307 (613)
T PRK03991 231 DLLEDYVYNLVVELGAMPVETPIMYDLSH-PAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTISYKNL 307 (613)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeecChhH-HhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcCchhhC
Confidence 45777889999999999999999987654 2444321111 23445522 235568999999999777666543 2 46
Q ss_pred CeeEEEeCc-EEecCCcccc-cc---ccceEEEE-EEecC----CCChhHhhhhHHHHHHhhCCCCccccccccccccch
Q psy15928 81 PLKLFEISD-IVYKDATAEV-GA---RNQRNLVA-VYYNK----SPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNL 150 (485)
Q Consensus 81 ~~rlFEiG~-Vf~~~~~~~~-~~---~e~~~l~~-~l~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (485)
++|++|+|+ +|+.+..+.+ |. ++.+..-+ ..+-. ...|..+.....++++.||+++.+...
T Consensus 308 Plr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~--------- 378 (613)
T PRK03991 308 PLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIR--------- 378 (613)
T ss_pred ChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEec---------
Confidence 899999999 9998754321 11 12111111 11111 012566666667777888887321100
Q ss_pred hhhhcCCCCCH-HHHHHHHHHHHHHhCCC
Q psy15928 151 VAVYYNKSPGF-EIIHGLLDRVMQLLQIP 178 (485)
Q Consensus 151 ~~~~~~~~~~f-~~lKg~ve~ll~~lgi~ 178 (485)
.+-+| .+.+..++.+++.+|++
T Consensus 379 ------~t~df~~~~~~~l~~~l~~~g~~ 401 (613)
T PRK03991 379 ------FTEDFYEENKDWIVELVKREGKP 401 (613)
T ss_pred ------CHHHHhhhHHHHHHHHHHHcCCC
Confidence 01233 36678888899999876
No 77
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=88.51 E-value=0.55 Score=46.80 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCc---hhhhhhhhhchHHHHHHHHHhcC-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANKK-M 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls---~e~s~LR~SLlpgLLe~~~~N~~-~ 78 (485)
+.+++.+++.+...||+|+.+..+...+.....-+. +.-..+..++.+--. ++.-+||++-=+.+....++... +
T Consensus 36 ~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~ 115 (261)
T cd00778 36 ENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSY 115 (261)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccch
Confidence 467778899999999999999999987642122221 111123456643211 24568999977777777777644 3
Q ss_pred -CCCeeEEEeCcEEecCC
Q psy15928 79 -PLPLKLFEISDIVYKDA 95 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~ 95 (485)
..++|++++|++|+.+.
T Consensus 116 r~LPlr~~~~~~~fR~E~ 133 (261)
T cd00778 116 RDLPLKINQWVNVFRWET 133 (261)
T ss_pred hhcCHHHHhhhhhccCCC
Confidence 46999999999998764
No 78
>KOG2783|consensus
Probab=88.38 E-value=1.7 Score=45.30 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCCceEEeeCCCCCccCCceEEEEECCE---EEEEEEeeCHHHHHhCCCCCCE-EEEEec
Q psy15928 162 EIIHGLLDRVMQLL-QIPLDKTEGYCIQAADNATFFPQRCANVMLRGS---KIGTMGVLHPEVLGKFELTLPC-SILEIN 236 (485)
Q Consensus 162 ~~lKg~ve~ll~~l-gi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~---~iG~iG~lhP~vl~~~di~~~v-~~~Ei~ 236 (485)
.++|-.++.+...+ |.. .++++...-.|+-||.-..+|+..|. ++| .|.+.-.+++.-|+...+ ++|.++
T Consensus 228 ~~lk~~l~~L~~~Lf~~~----~~~rwV~~yfpft~ps~eleI~~~~~wlevlg-cgvi~~~il~~ag~~~~igwafglg 302 (436)
T KOG2783|consen 228 QHLKQTLEGLCDELFGKE----VEYRWVDAYFPFTHPSWELEIYFKGEWLEVLG-CGVMRQRLLKRAGLNNYIGWAFGLG 302 (436)
T ss_pred HHHHHHHHHHHHHhccch----hheeheeeEcccCCCCeEEEEEecCCcHhhhc-cchhHHHHHhhccccceeeeeeecc
Confidence 67888888888776 332 24566666667778888899998885 566 888889999999998655 899999
Q ss_pred ccccccc
Q psy15928 237 IEPFNFA 243 (485)
Q Consensus 237 ld~L~~~ 243 (485)
||+|...
T Consensus 303 LerLAMl 309 (436)
T KOG2783|consen 303 LERLAML 309 (436)
T ss_pred HHHHHHH
Confidence 9999653
No 79
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=87.56 E-value=3.9 Score=42.25 Aligned_cols=107 Identities=14% Similarity=0.011 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHH-HHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTL-AANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~-~~N~~~~~~~r 83 (485)
.+.+.+|++|...||.||-|..+++... . .....+.+...-.....+|++|-=-- ++.+ +.. --|
T Consensus 13 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~--~------~~~~~f~~~~~~~~~~~yL~~Spql~-~k~ll~~g-----~~~ 78 (329)
T cd00775 13 KIISYIRKFLDDRGFLEVETPMLQPIAG--G------AAARPFITHHNALDMDLYLRIAPELY-LKRLIVGG-----FER 78 (329)
T ss_pred HHHHHHHHHHHHCCCEEEECCccccCCC--C------ccceeEEeccCCCCcceeeccCHHHH-HHHHHhcC-----CCc
Confidence 4678899999999999999999875431 1 00112222111223445677664222 2222 122 258
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDR 127 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~ 127 (485)
+||||+||+.++.+..+..|.++|-.=+++. ++.++....+.
T Consensus 79 vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~--~~~~~m~~~e~ 120 (329)
T cd00775 79 VYEIGRNFRNEGIDLTHNPEFTMIEFYEAYA--DYNDMMDLTED 120 (329)
T ss_pred EEEEeccccCCCCCCCCCCceEEEEEeeecC--CHHHHHHHHHH
Confidence 8999999998765433445566665544442 34555555443
No 80
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=86.83 E-value=3.5 Score=44.12 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeCCCchhhhhhhhhchHHHHHHHHHh-cCC-CCC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN-KKM-PLP 81 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N-~~~-~~~ 81 (485)
.+.+-+++.+...||+|+.+..++..+.. +.-|..... ....+|.+ +.-+||++-=..+....+.. .+. ..+
T Consensus 178 aL~~~~~~~~~~~G~~~v~~P~lv~~~~~-~~~G~~~~f~~~~y~i~~----~~~~L~pTsE~~~~~~~~~~i~s~~~LP 252 (418)
T TIGR00414 178 ALINFMLDLLEKNGYQEIYPPYLVNEESL-DGTGQLPKFEEDIFKLED----TDLYLIPTAEVPLTNLHRNEILEEEELP 252 (418)
T ss_pred HHHHHHHHHHHHcCCEEEeCCccccHHHH-hhcCccccccccceEecC----CCEEEEeCCcHHHHHHHhCcCCChHhCC
Confidence 45566688888899999999999998853 555542222 23456643 34578887555554443333 222 358
Q ss_pred eeEEEeCcEEecCCcc---c-cc---cccceEEEEEEecCC----CChhHhhhhHHHHHHhhCCCC
Q psy15928 82 LKLFEISDIVYKDATA---E-VG---ARNQRNLVAVYYNKS----PGFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l~G~~----~~~~~~~~~~~~~~~~~~~~~ 136 (485)
+|++++|++|+.+.+. + .| ..|....-+...-.. ..|..+....+++++.||+|+
T Consensus 253 lr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~ 318 (418)
T TIGR00414 253 IKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPY 318 (418)
T ss_pred eeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 9999999999987531 1 11 122222222221111 127777888888889999883
No 81
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=86.43 E-value=13 Score=40.67 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=81.9
Q ss_pred HCCCeEeeccceechhhhHHHhcccCCCC-CcEEe----------------------------eCCCchhhhhhhhhchH
Q psy15928 16 QAGFTEVLTFALCSRDDVSVKLRQKMEDI-PAVHI----------------------------GNPKTLEFQIARTTLVP 66 (485)
Q Consensus 16 ~~Gf~Evitysf~s~~~~~~~~~~~~~~~-~~v~I----------------------------~NPls~e~s~LR~SLlp 66 (485)
..||+|++...|+..+.+ ...+...... ....+ .+.+.++.-+||++-=.
T Consensus 240 k~Gy~ev~fP~LIp~e~l-~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ 318 (520)
T TIGR00415 240 KIGFQECLFPKLIPLDIM-NKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCE 318 (520)
T ss_pred hcCCeEEeCCcEecHHHH-cccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHH
Confidence 469999999999998865 4444322221 12223 12224445568888877
Q ss_pred HHHHHHHHhc-CC-CCCeeEEE-eCcEEecCCcccccc---ccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCcccc
Q psy15928 67 GLLKTLAANK-KM-PLPLKLFE-ISDIVYKDATAEVGA---RNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTE 140 (485)
Q Consensus 67 gLLe~~~~N~-~~-~~~~rlFE-iG~Vf~~~~~~~~~~---~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (485)
.+....+.-. .. ..++++|. .|.||+.+.+...+. .|....=++..|.. ++...
T Consensus 319 ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tp---Eea~e----------------- 378 (520)
T TIGR00415 319 PFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEP---EETEE----------------- 378 (520)
T ss_pred HHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCH---HHHHH-----------------
Confidence 7776666333 33 35899999 668999876532221 12223333333321 11111
Q ss_pred ccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCce
Q psy15928 141 GYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRC 200 (485)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrs 200 (485)
-...+....+.+++.|+++ |+....++|+|..|++
T Consensus 379 -------------------~~e~mle~~~~~l~~L~Lp------yrv~~adDPFf~~g~k 413 (520)
T TIGR00415 379 -------------------IRDKTLELAEDAADELDLE------WWTEVGDDPFYLEGRK 413 (520)
T ss_pred -------------------HHHHHHHHHHHHHHHcCCC------eEEeecCCcccccccC
Confidence 1245678889999999996 6666666787776643
No 82
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=86.31 E-value=5 Score=43.86 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHH-HHHhcCCCCCe
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKT-LAANKKMPLPL 82 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~-~~~N~~~~~~~ 82 (485)
++.+.+|++|...||.||-|..+++... | ....++.. .|-.. ...+||+|-=-- ++. +.-. -=
T Consensus 177 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~-----G---a~a~pF~t~~~~~~-~~~yL~~Spql~-lk~l~v~g-----~~ 241 (491)
T PRK00484 177 KIISAIRRFLDNRGFLEVETPMLQPIAG-----G---AAARPFITHHNALD-IDLYLRIAPELY-LKRLIVGG-----FE 241 (491)
T ss_pred HHHHHHHHHHHHCCCEEEECCceeccCC-----C---ccceeeeeccccCC-CceEeccCHHHH-HHHHHhcc-----CC
Confidence 4677899999999999999999974321 1 01112222 13222 334577664221 222 1222 24
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHH
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRV 128 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~ 128 (485)
|+||||++|+.++.+..+..|.+++-+=++.. ++.++....+.+
T Consensus 242 rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~--d~~d~m~~~E~l 285 (491)
T PRK00484 242 RVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYA--DYNDMMDLTEEL 285 (491)
T ss_pred cEEEEecceecCCCCCCcCCceEEEEEEEecC--CHHHHHHHHHHH
Confidence 88999999998766544455666665544432 355555555543
No 83
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=85.56 E-value=4.7 Score=44.93 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEE-eeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVH-IGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~-I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|.-+++..- | ....++. =.|.+..++ +||+|-=--|=..+.- + -=|
T Consensus 258 ~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G-----G---A~a~PF~T~~n~~d~~l-YLriSpEL~lKrLlvg----G-~~r 323 (585)
T PTZ00417 258 KIINYLRNFLNDRGFIEVETPTMNLVAG-----G---ANARPFITHHNDLDLDL-YLRIATELPLKMLIVG----G-IDK 323 (585)
T ss_pred HHHHHHHHHHHHCCeEEEeCCeeeccCC-----c---ccceeEEecccCCCcce-EEeecHHHHHHHHHHh----C-CCC
Confidence 4677899999999999999999986421 1 0111222 124443333 6776643332111111 2 148
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRV 128 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~ 128 (485)
+||||++|+.++.+..+..|.+++-+=++. .+++++-...+.+
T Consensus 324 VfeIgp~FRnE~~~~rHnpEFTmlE~y~ay--~dy~dlM~l~E~L 366 (585)
T PTZ00417 324 VYEIGKVFRNEGIDNTHNPEFTSCEFYWAY--ADFYDLIKWSEDF 366 (585)
T ss_pred EEEEcccccCCCCCCCccceeeeeeeeeec--CCHHHHHHHHHHH
Confidence 999999999876543444455555444433 2355555554443
No 84
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=85.52 E-value=7 Score=39.44 Aligned_cols=107 Identities=11% Similarity=0.030 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCC-CchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNP-KTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NP-ls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|+.|...||.||-|..++..... |. ....+.-. ...+.-.||+|----|=..++. + --|
T Consensus 6 ~i~~~iR~f~~~~gfiEV~TP~L~~~~~~----g~-----~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~----g-~~~ 71 (280)
T cd00777 6 RVIKAIRNFLDEQGFVEIETPILTKSTPE----GA-----RDFLVPSRLHPGKFYALPQSPQLFKQLLMVS----G-FDR 71 (280)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecCCCC----CC-----CCceeccccCCCceeecccCHHHHHHHHHhc----C-cCc
Confidence 56788999999999999999999853311 11 01111111 1122223776644322112222 1 248
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDR 127 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~ 127 (485)
+|+||+||+.+........|.+.+.+=+++. +++++....++
T Consensus 72 v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~--~~~dlm~~~e~ 113 (280)
T cd00777 72 YFQIARCFRDEDLRADRQPEFTQIDIEMSFV--DQEDIMSLIEG 113 (280)
T ss_pred EEEeccceeCCCCCCCccceeEEeEeeeccC--CHHHHHHHHHH
Confidence 9999999997654322223455665544443 34555555443
No 85
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=84.51 E-value=3.5 Score=45.08 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHH-HHH-HHhcCCCCC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLL-KTL-AANKKMPLP 81 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLL-e~~-~~N~~~~~~ 81 (485)
.+.+.+|++|...||.||-|..+++..- | ....++.. .|-+. ...+||+| |-|. +.+ .-. -
T Consensus 177 ~i~~~iR~fl~~~gF~EVeTP~L~~~~g-----g---a~a~pF~t~~~~~~-~~~yLriS--pELylKrlivgG-----~ 240 (496)
T TIGR00499 177 KIIKAIRRFLDDRGFIEVETPMLQVIPG-----G---ANARPFITHHNALD-MDLYLRIA--PELYLKRLIVGG-----F 240 (496)
T ss_pred HHHHHHHHHHHHCcCEEEeCCeeecCCC-----C---ccceeEEeecccCC-CceEEecC--HHHHHHHHHhCC-----C
Confidence 4567899999999999999999975421 1 01122322 23332 34568888 4443 221 222 2
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHH
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDR 127 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~ 127 (485)
=|+||||++|+.++.+..+..|.++|-+=++. .+++++-...+.
T Consensus 241 ~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~dlm~~~E~ 284 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAY--ADYEDLMDLTEN 284 (496)
T ss_pred CceEEEecceecCCCCCcccchhheeehhhhc--CCHHHHHHHHHH
Confidence 48899999999876543334445555332222 134555555443
No 86
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=84.42 E-value=1.3 Score=48.07 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhc--ccCCCCCcEEeeCCCc---hhhhhhhhhchHHHHHHHHHhcC-
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR--QKMEDIPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANKK- 77 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~~~v~I~NPls---~e~s~LR~SLlpgLLe~~~~N~~- 77 (485)
+.+++.+++.+...||+|+.+..|...+.+ ..-+ .+.-......+..-=. ++.-+|||+.-|.+....+....
T Consensus 42 ~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~-~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S 120 (472)
T TIGR00408 42 KNIQKILRNILDEIGHEEVYFPMLIPESEL-AKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKS 120 (472)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccC
Confidence 467778899999999999999999987753 3322 1100123345533111 23459999999999988887754
Q ss_pred C-CCCeeEEEeCcEEecCC
Q psy15928 78 M-PLPLKLFEISDIVYKDA 95 (485)
Q Consensus 78 ~-~~~~rlFEiG~Vf~~~~ 95 (485)
+ ..++|++++|+||+.+.
T Consensus 121 ~rdLPlr~~q~~~vfR~E~ 139 (472)
T TIGR00408 121 YTDLPLKINQWVNVFRYET 139 (472)
T ss_pred hhhcCHHHhheeeeecCCC
Confidence 3 46899999999998754
No 87
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=84.42 E-value=5.6 Score=44.82 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|.-++.... .. ...++.+ .|-.. ...+||+|-=--|=..+.-. --|
T Consensus 238 ~I~~aiR~ff~~~gFlEVeTPiL~~~~~--ga------~a~pF~t~~n~~~-~~~yL~~SPELylKrLivgG-----~er 303 (659)
T PTZ00385 238 VMLQALRDYFNERNFVEVETPVLHTVAS--GA------NAKSFVTHHNANA-MDLFLRVAPELHLKQCIVGG-----MER 303 (659)
T ss_pred HHHHHHHHHHHHCCCEEeeCCEeeccCC--CC------CccceEeecccCC-CCEEecCChHHHHHHHhhcc-----cCC
Confidence 4678899999999999999999975321 10 1122222 12222 23357766332222222211 258
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhh
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL 132 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~ 132 (485)
+||||++|+.++.+..+..|.+++-+=+++. +++++-...+.++..+
T Consensus 304 VyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~--d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 304 IYEIGKVFRNEDADRSHNPEFTSCEFYAAYH--TYEDLMPMTEDIFRQL 350 (659)
T ss_pred EEEEeceecCCCCCCCccccccceeeeeecC--CHHHHHHHHHHHHHHH
Confidence 8999999998765433444555554433332 4666666666555433
No 88
>PLN02502 lysyl-tRNA synthetase
Probab=83.89 E-value=6.6 Score=43.55 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
.+.+.+|++|...||.||-|.-+++.. +. ....++.. .|-+ ....+||+|-=--|=..+.--. =|
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~------gG--A~a~pF~t~~n~~-~~~~yL~~Spel~lK~L~v~g~-----~r 299 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIA------GG--AAARPFVTHHNDL-NMDLYLRIATELHLKRLVVGGF-----ER 299 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccC------CC--ccccceeeecccC-CcceeeecCHHHHHHHHHHhcc-----CC
Confidence 456789999999999999999987532 11 01112222 2433 2345677764433222222221 47
Q ss_pred EEEeCcEEecCCc
Q psy15928 84 LFEISDIVYKDAT 96 (485)
Q Consensus 84 lFEiG~Vf~~~~~ 96 (485)
+||||++|+.++.
T Consensus 300 VfeIg~~FRnE~~ 312 (553)
T PLN02502 300 VYEIGRQFRNEGI 312 (553)
T ss_pred EEEEcCeeeCCCC
Confidence 8999999997654
No 89
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=83.05 E-value=7.4 Score=42.00 Aligned_cols=109 Identities=9% Similarity=-0.060 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEee---C----CCchhhhhhhhhchHHHHHHHHHhcC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIG---N----PKTLEFQIARTTLVPGLLKTLAANKK 77 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~---N----Pls~e~s~LR~SLlpgLLe~~~~N~~ 77 (485)
.+.+.+|++|...||.||-|..+++..- +. ...++.+. + ..-....+|++|----| +.+...
T Consensus 138 ~i~~~iR~f~~~~gf~EV~TP~L~~~~~--eg------~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~g-- 206 (450)
T PRK03932 138 TLAQAIHEFFNENGFVWVDTPIITASDC--EG------AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAMA-- 206 (450)
T ss_pred HHHHHHHHHHHHCCCEEecCCceeccCC--CC------CCCceEeecccccccccccCCCcccccCHHHHH-HHHHhc--
Confidence 4678899999999999999999985431 11 11223331 1 11123457888875544 554422
Q ss_pred CCCCeeEEEeCcEEecCCcc-ccccccceEEEEEEecCCCChhHhhhhHHHHH
Q psy15928 78 MPLPLKLFEISDIVYKDATA-EVGARNQRNLVAVYYNKSPGFEIIHGLLDRVM 129 (485)
Q Consensus 78 ~~~~~rlFEiG~Vf~~~~~~-~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~ 129 (485)
-=|+||||++|+.++.. ..+..|.++|-+=+++. +++++-...+.++
T Consensus 207 ---~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~--~~~~~m~~~e~li 254 (450)
T PRK03932 207 ---LGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFA--DLEDNMDLAEEML 254 (450)
T ss_pred ---cCCeEEeeeccccCCCCCccccccccccceEEecc--CHHHHHHHHHHHH
Confidence 24789999999987642 22334555665544432 2455555555443
No 90
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=83.05 E-value=1.9 Score=46.95 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCC---CchhhhhhhhhchHHHHHHHHHhcC-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNP---KTLEFQIARTTLVPGLLKTLAANKK-M 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NP---ls~e~s~LR~SLlpgLLe~~~~N~~-~ 78 (485)
+.+++.+++.+...||+|+.+..|...+...+.-+.-.. ......+..- -.++.-+|||+.=+++....++-.. +
T Consensus 48 ~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~Sy 127 (477)
T PRK08661 48 ENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSY 127 (477)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcch
Confidence 467788899999999999999999987643111111000 1223444321 1134568999998888877777643 3
Q ss_pred -CCCeeEEEeCcEEecCC
Q psy15928 79 -PLPLKLFEISDIVYKDA 95 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~ 95 (485)
..|+|++++|+||+.+.
T Consensus 128 rdLPlrl~q~~~vfR~E~ 145 (477)
T PRK08661 128 RDLPLLYNQWVNVVRWET 145 (477)
T ss_pred hhcCHHHhcccceeeCCC
Confidence 46999999999999754
No 91
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=82.31 E-value=7.2 Score=41.81 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=77.5
Q ss_pred HHHHHHHHHHH-HCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc-CC-CC
Q psy15928 5 KLSDQLRGDIA-QAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK-KM-PL 80 (485)
Q Consensus 5 ~~~~klr~~L~-~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~-~~-~~ 80 (485)
.+.+-+++.+. ..||+|+.+..|+..+.. ..-|.... .....+|.+ +.-+||++-=+.+....+... +. ..
T Consensus 175 aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~-~~~G~~~~f~~~ly~i~~----~~~~L~pTsE~~l~~l~~~~~~s~~dL 249 (425)
T PRK05431 175 ALIQFMLDLHTEEHGYTEVIPPYLVNEESM-YGTGQLPKFEEDLYKIED----DDLYLIPTAEVPLTNLHRDEILDEEEL 249 (425)
T ss_pred HHHHHHHHHHHHhcCCEEEeccccccHHHH-hhcCccccchhhceEecC----CCEEEEeCCcHHHHHHHhcccCCHHhC
Confidence 45555677777 899999999999998754 44453222 223456643 344788777666654433332 22 35
Q ss_pred CeeEEEeCcEEecCCcc---cc-c---cccceEEEEE-EecCC---CChhHhhhhHHHHHHhhCCCC
Q psy15928 81 PLKLFEISDIVYKDATA---EV-G---ARNQRNLVAV-YYNKS---PGFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~~-~---~~e~~~l~~~-l~G~~---~~~~~~~~~~~~~~~~~~~~~ 136 (485)
++++++++++|+.+.+. ++ | ..|....-+. ++-.. ..|..+....+++++.||+++
T Consensus 250 Plr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpy 316 (425)
T PRK05431 250 PLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPY 316 (425)
T ss_pred CeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 89999999999977532 11 1 1222222222 22111 127778888888889999883
No 92
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=82.19 E-value=7.1 Score=42.83 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcE-EeeCCCchhhhhhhhhchHHHHHH-HHHhcCCCCCe
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAV-HIGNPKTLEFQIARTTLVPGLLKT-LAANKKMPLPL 82 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v-~I~NPls~e~s~LR~SLlpgLLe~-~~~N~~~~~~~ 82 (485)
++.+.+|++|...||.||-|.-+....- | ....++ .-.|-+.. ..+||+|-=-- |+. +.-. -=
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~g-----G---a~a~pF~t~~~~~~~-~~yL~~SpELy-lKrlivgG-----~~ 253 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPG-----G---ASARPFITHHNALDL-DMYLRIAPELY-LKRLVVGG-----FE 253 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCC-----C---CcccceecccccCCc-ceeeecCHHHH-HHHHHhcc-----CC
Confidence 4667899999999999999999865321 1 011122 11243332 34687775221 222 2111 25
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHH
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVM 129 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~ 129 (485)
|+||||++|+.++.+..+..|.++|-+=++.. +++++-...+.++
T Consensus 254 rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~--d~~d~m~l~E~li 298 (505)
T PRK12445 254 RVFEINRNFRNEGISVRHNPEFTMMELYMAYA--DYHDLIELTESLF 298 (505)
T ss_pred cEEEEehhccCCCCCCCcCcccceeeeeeecC--CHHHHHHHHHHHH
Confidence 88999999998765433445556664444332 3566666655443
No 93
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=81.97 E-value=4.1 Score=39.83 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEeeccC---hHhHHHHHHHHHHHHHhhcCCc
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATD---LTKAKIVLDTLVTMFSQYCEDK 336 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d---~~~~~~al~~~~~L~~~~~g~~ 336 (485)
+..++.+|+.+.+.-.=+.-.|..|.|+++|+++++=+.+.+ -+.+..+++.+++++.++.++.
T Consensus 153 ~geiv~~Dd~G~~~r~~~~Rds~rT~vt~~Tk~~l~I~e~vp~~~~~~l~~a~~~l~~~l~~~~gG~ 219 (229)
T COG3382 153 EGEIVLVDDEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVPGVEVEDLVEALDSLADLLEKLLGGT 219 (229)
T ss_pred CCcEEEEcCCCCeeeecccccceeeehhhccceEEEEEecCCCccHHHHHHHHHHHHHHHHHhcCCc
Confidence 667788999887656677888999999999999999888765 5777889999999999998763
No 94
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=81.85 E-value=7.1 Score=40.19 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|+.+...||.||-|..++...- +. ...++.+ | ......+||+|---- ++.+... --|+
T Consensus 29 ~i~~~ir~~f~~~gf~eV~TP~l~~~~~--e~------~~~~f~~-~-~~~~~~yL~~Spql~-lk~l~~~-----~~~v 92 (322)
T cd00776 29 EVLRAFREFLRENGFTEVHTPKITSTDT--EG------GAELFKV-S-YFGKPAYLAQSPQLY-KEMLIAA-----LERV 92 (322)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceecCCC--Cc------cCCcccc-c-cCCCcceecCCHHHH-HHHHHHh-----hhhh
Confidence 5678899999999999999999986431 11 1112222 1 112344677765553 3333322 2478
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHH
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLD 126 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~ 126 (485)
||||+||+.++... .+..|.++|-.=+.+. .+++++-...+
T Consensus 93 f~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~-~~~~dlm~~~e 134 (322)
T cd00776 93 YEIGPVFRAEKSNTRRHLSEFWMLEAEMAFI-EDYNEVMDLIE 134 (322)
T ss_pred EEeccccccCCCCcCCCcceeeccceeeecc-CCHHHHHHHHH
Confidence 99999999875321 2334555555444442 13444444444
No 95
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=80.96 E-value=4.4 Score=43.83 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|-..||-||-|.-+-.-. |. ...++-+.-.|-+..|+ +||=+. -|. +++=+- +.==|+
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~lq~i~------GG-A~ArPF~ThhNald~dl-yLRIAp--ELy--LKRliV-GG~erV 251 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPMLQPIP------GG-AAARPFITHHNALDMDL-YLRIAP--ELY--LKRLIV-GGFERV 251 (502)
T ss_pred HHHHHHHHHHHHCCCeEeccccccccC------CC-cccccceeeecccCCce-EEeecc--HHH--HHHHHh-cCchhh
Confidence 567889999999999999998766432 11 11123355566666655 344321 110 111111 111388
Q ss_pred EEeCcEEecCCc
Q psy15928 85 FEISDIVYKDAT 96 (485)
Q Consensus 85 FEiG~Vf~~~~~ 96 (485)
|||||+|+.++-
T Consensus 252 fEIgr~FRNEGi 263 (502)
T COG1190 252 FEIGRNFRNEGI 263 (502)
T ss_pred eeeccccccCCC
Confidence 999999997654
No 96
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=80.39 E-value=3.6 Score=42.01 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEee--CC-CchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIG--NP-KTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~--NP-ls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
.+.+.+|+.|...||.||-|..++...-. +. ...++.+. +| -.....+||+|---.|=..++-..
T Consensus 6 ~i~~~ir~~f~~~gF~EV~TP~l~~~~~~-e~------~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~----- 73 (304)
T TIGR00462 6 RLLAAIRAFFAERGVLEVETPLLSPAPVT-DP------HLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGS----- 73 (304)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEecCCCC-Cc------CCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccC-----
Confidence 57889999999999999999999964210 10 01122221 11 112346777764443322333222
Q ss_pred eeEEEeCcEEecCCc
Q psy15928 82 LKLFEISDIVYKDAT 96 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~ 96 (485)
-|+||||+||+.++.
T Consensus 74 ~rVfeigp~FRaE~~ 88 (304)
T TIGR00462 74 GPIFQICKVFRNGER 88 (304)
T ss_pred CCEEEEcCceeCCCC
Confidence 488999999997653
No 97
>PLN02678 seryl-tRNA synthetase
Probab=79.88 E-value=14 Score=39.90 Aligned_cols=85 Identities=16% Similarity=0.068 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeCCCchhhhhhhhh---chHHHHHHHHHhcC--C
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGNPKTLEFQIARTT---LVPGLLKTLAANKK--M 78 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~NPls~e~s~LR~S---LlpgLLe~~~~N~~--~ 78 (485)
.+.+-+++.+...||+||.+..++..+.+ ..-|..... .+..+|.+. .+|.-.+.|+ +.|.. .|.- .
T Consensus 179 AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~-~~sG~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~h-----~~~~~s~ 251 (448)
T PLN02678 179 ALINFGLAFLRKRGYTPLQTPFFMRKDVM-AKCAQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAYH-----RGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHcCCEEEECcccccHHHH-hhcCCcccchhcCceecCC-CCceeeecccccccChHH-----hcccCCH
Confidence 45566777888899999999999998753 555533222 345566431 1343334432 33333 3422 2
Q ss_pred -CCCeeEEEeCcEEecCCc
Q psy15928 79 -PLPLKLFEISDIVYKDAT 96 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~~ 96 (485)
..++|++++++||+.+.+
T Consensus 252 ~eLPlr~~~~s~cfR~Eag 270 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAG 270 (448)
T ss_pred HhCCceeEEeccccccccc
Confidence 358999999999998764
No 98
>PLN02850 aspartate-tRNA ligase
Probab=79.16 E-value=8.2 Score=42.58 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|++|...||.||-|.-+++... + + ....+.+. ......+|++|----+=..+.-.. -|+
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e--g----ga~~F~v~--yf~~~~~L~qSpql~kq~li~~g~-----~rV 294 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGAS--E--G----GSAVFRLD--YKGQPACLAQSPQLHKQMAICGDF-----RRV 294 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCC--c--c----ccceeeec--cCCcceecCCCHHHHHHHHHHhcC-----Cce
Confidence 4678899999999999999999976531 1 1 11223332 123445677764432222222222 488
Q ss_pred EEeCcEEecCC
Q psy15928 85 FEISDIVYKDA 95 (485)
Q Consensus 85 FEiG~Vf~~~~ 95 (485)
||||+||+.++
T Consensus 295 feIgp~FRaE~ 305 (530)
T PLN02850 295 FEIGPVFRAED 305 (530)
T ss_pred EEEecccccCC
Confidence 99999999765
No 99
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=76.37 E-value=14 Score=42.04 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.||-|.-++.... + | .++.+.-.+-...+.-.|++| |.|..-+.-- .+ -=|+
T Consensus 161 ~i~~~iR~fl~~~gFiEVeTPiL~~s~~--e--G----Ar~~~~p~~~~~~~~y~L~qS--PQlykq~lm~--~G-~~rv 227 (706)
T PRK12820 161 RIIKCARDFLDSRGFLEIETPILTKSTP--E--G----ARDYLVPSRIHPKEFYALPQS--PQLFKQLLMI--AG-FERY 227 (706)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCC--C--C----CcceEEeeecCCCcceecCCC--HHHHHHHHHh--cc-CCcE
Confidence 4677899999999999999999985321 0 1 011111101001112225554 3333322111 11 2588
Q ss_pred EEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 85 FEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 85 FEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
||||+||+.++.+.....|.++|-+=+++- +++++-...+.++.
T Consensus 228 fqI~~~FR~E~~~t~r~pEFT~LE~E~af~--d~~dvm~l~E~li~ 271 (706)
T PRK12820 228 FQLARCFRDEDLRPNRQPEFTQLDIEASFI--DEEFIFELIEELTA 271 (706)
T ss_pred EEEechhcCCCCCCCcCccccccceeeccC--CHHHHHHHHHHHHH
Confidence 999999998765433334555665544442 35566666665543
No 100
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=74.37 E-value=15 Score=39.32 Aligned_cols=94 Identities=15% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|++|.+.||.||-|..+++..- +- ..+.+.+. ......+||+|----+=..++-. --|+
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~--eg------~~~~f~v~--~~~~~~yL~~Spql~~q~li~~g-----~~rV 202 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVASAT--EG------GTELFPIT--YFEREAFLGQSPQLYKQQLMAAG-----FERV 202 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecCCC--CC------CcceeeeE--ecCCcEEECcCHHHHHHHHHhcc-----cCcE
Confidence 4677899999999999999999985431 10 01112221 11233457666443221122221 2588
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEEec
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVYYN 113 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G 113 (485)
||||++|+.++.+. .+..|.++|-+=+++
T Consensus 203 f~i~~~FR~E~~~t~rHl~EFt~lE~e~a~ 232 (428)
T TIGR00458 203 YEIGPIFRAEEHNTHRHLNEATSIDIEMAF 232 (428)
T ss_pred EEEecccccCCCCCccchheeeEeeeeecc
Confidence 99999999876532 233455566544443
No 101
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=74.29 E-value=17 Score=43.63 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|..+++..- .. ...+... .|-...+ -+||+|-=--| +.+. .+ + -=|
T Consensus 775 ~i~~~iR~fl~~~gFlEVeTPiL~~~~g--Ga------~a~pF~t~~~~~~~~-~yLriSPELyl-KrLi--vg-G-~er 840 (1094)
T PRK02983 775 AVVRAVRETLVARGFLEVETPILQQVHG--GA------NARPFVTHINAYDMD-LYLRIAPELYL-KRLC--VG-G-VER 840 (1094)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEeeccCC--Cc------ccceeEeeecCCCcc-chhhcChHHHH-HHHH--hc-c-cCc
Confidence 4667899999999999999999984321 10 1112221 2333322 37777632211 2211 11 1 248
Q ss_pred EEEeCcEEecCCc
Q psy15928 84 LFEISDIVYKDAT 96 (485)
Q Consensus 84 lFEiG~Vf~~~~~ 96 (485)
+||||++|+.++.
T Consensus 841 VFEIg~~FRnE~~ 853 (1094)
T PRK02983 841 VFELGRNFRNEGV 853 (1094)
T ss_pred eEEEcceecCCCC
Confidence 8999999997654
No 102
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=72.48 E-value=24 Score=39.39 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.||-|..++.... + | ..+.+.-.+-...+.-.||+| |.|..-+.-= .+ -=|+
T Consensus 143 ~i~~~iR~ff~~~gFiEVeTP~L~~s~~--e--G----ar~f~vp~~~~~~~~y~L~qS--pQlykq~l~v--~G-~erv 209 (583)
T TIGR00459 143 KVTKAVRNFLDQQGFLEIETPMLTKSTP--E--G----ARDYLVPSRVHKGEFYALPQS--PQLFKQLLMV--SG-VDRY 209 (583)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeccCCC--C--C----CcceeeeeecCCCceeecCCC--HHHHHHHHHh--cc-cCcE
Confidence 4677899999999999999999985321 0 1 011000000001112225554 3332221110 11 2488
Q ss_pred EEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 85 FEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 85 FEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
||||+||+.++.......|.+.|-+=++.. +++++-...+.++.
T Consensus 210 fqI~~~FR~E~~~t~r~pEFT~le~E~af~--d~~dvm~~~E~li~ 253 (583)
T TIGR00459 210 YQIARCFRDEDLRADRQPEFTQIDMEMSFM--TQEDVMELIEKLVS 253 (583)
T ss_pred EEEcceeeCCCCCCCCCcccCcceeeecCC--CHHHHHHHHHHHHH
Confidence 999999998765433234555665544442 35666666655443
No 103
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=72.38 E-value=19 Score=38.67 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|++|...||.||-|..+++..- + + ..+.+.+. - -....+||+|---- ++.+... + --|+
T Consensus 141 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~--e--g----~~~~f~~~-~-~~~~~~L~~Spql~-~q~l~~~---g-~~rV 205 (437)
T PRK05159 141 EVLRAFREFLYENGFTEIFTPKIVASGT--E--G----GAELFPID-Y-FEKEAYLAQSPQLY-KQMMVGA---G-FERV 205 (437)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccCC--C--C----CcceEeEE-e-cCCceEecCCHHHH-HHHHHhc---C-CCcE
Confidence 4677899999999999999999875321 0 0 11122221 1 11234577665443 3333211 1 2588
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEEe
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVYY 112 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l~ 112 (485)
||||++|+.++.+. .+..|.++|-+=++
T Consensus 206 f~i~~~FR~E~~~t~rHl~EFt~lE~e~a 234 (437)
T PRK05159 206 FEIGPVFRAEEHNTSRHLNEYTSIDVEMG 234 (437)
T ss_pred EEEeceeeCCCCCCcccchhhheeeeeee
Confidence 99999999876542 23345556644443
No 104
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=68.69 E-value=19 Score=39.90 Aligned_cols=77 Identities=8% Similarity=0.110 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|++|...||.||-|..+++..- +- ....+.+ +--....+|++|---- ++.+..- + --|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~~--eg------ga~~F~v--~yf~~~~~L~qSpql~-kq~li~~---g-~~rV 282 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAPS--EG------GANVFKL--EYFNRFAYLAQSPQLY-KQMVLQG---D-VPRV 282 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCC--Cc------ccccccc--ccCCCCeecCCCHHHH-HHHHHhc---C-CCCE
Confidence 4678899999999999999998876431 10 0111222 1122445676664332 2222211 1 2588
Q ss_pred EEeCcEEecCCc
Q psy15928 85 FEISDIVYKDAT 96 (485)
Q Consensus 85 FEiG~Vf~~~~~ 96 (485)
||||+||+.++.
T Consensus 283 feI~p~FRaE~s 294 (550)
T PTZ00401 283 FEVGPVFRSENS 294 (550)
T ss_pred EEEeCeEeCCCC
Confidence 999999997653
No 105
>PLN02320 seryl-tRNA synthetase
Probab=67.34 E-value=45 Score=36.60 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CC-CcEEeeCCCchhhhhhhhhchHHHHHHHHHh--cCC-C
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DI-PAVHIGNPKTLEFQIARTTLVPGLLKTLAAN--KKM-P 79 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~-~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N--~~~-~ 79 (485)
.+.+-+++.+...||+||.+..++..+.+ ..-|.... +. ...+|.+ +++-.+-|+=.|- .....| +.. .
T Consensus 238 ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~-~~sG~~p~~e~~~~y~ie~---ed~~Li~TaE~Pl--~~~~~~~ils~~d 311 (502)
T PLN02320 238 ALVNWTLSEVMKKGFTPLTTPEIVRSSVV-EKCGFQPRGDNTQVYSIDG---SDQCLIGTAEIPV--GGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHcCCEEEECCccchHHHH-HhcCCCcccccCceeEECC---CceEEeecccccc--cccccccccCHhh
Confidence 45666777778889999999999998864 55554211 12 3345543 2332222221221 112223 222 3
Q ss_pred CCeeEEEeCcEEecCCc
Q psy15928 80 LPLKLFEISDIVYKDAT 96 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~ 96 (485)
.++|++++|.||+.+.+
T Consensus 312 LPlRy~~~s~cFR~EAg 328 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAG 328 (502)
T ss_pred CCceeEEeccccccccc
Confidence 58999999999998754
No 106
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=67.11 E-value=33 Score=37.09 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEee--C-C----CchhhhhhhhhchHHHHHHHHHhcC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIG--N-P----KTLEFQIARTTLVPGLLKTLAANKK 77 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~--N-P----ls~e~s~LR~SLlpgLLe~~~~N~~ 77 (485)
.+.+.+|++|...||.||-|.-+++..- +.. .+...+. | + .-....+|++|--- .++.+..
T Consensus 141 ~i~~~~r~~~~~~gf~eV~TP~l~~~~~--eg~------~~~F~v~~~~~~~~~~~~~~~~yL~~Spql-~lq~l~~--- 208 (453)
T TIGR00457 141 ALSQAIHRYFQENGFTWVSPPILTSNDC--EGA------GELFRVSTDGIDFSQDFFGKEAYLTVSGQL-YLETYAL--- 208 (453)
T ss_pred HHHHHHHHHHHHCCCEEecCCeEeecCC--CCC------CCceEecccccccchhccCCccccccCHHH-HHHHHhh---
Confidence 4678899999999999999999985431 110 1112222 1 0 11233457777321 3333321
Q ss_pred CCCCeeEEEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHHHH
Q psy15928 78 MPLPLKLFEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLDRV 128 (485)
Q Consensus 78 ~~~~~rlFEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~ 128 (485)
+ -=|+||||++|+.++.+. .+..|.++|-+=+++. ++.++-...+.+
T Consensus 209 -g-~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~--~~~dvm~~~E~l 256 (453)
T TIGR00457 209 -A-LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFA--NLNDLLQLAETL 256 (453)
T ss_pred -c-ccCceEeeeccccCCCCCCcCcchhccceeeeecC--CHHHHHHHHHHH
Confidence 2 247899999999876431 2334555554433332 245555555543
No 107
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=66.52 E-value=36 Score=38.17 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCC-CchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNP-KTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NP-ls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|..++.... + | .. ...+... ...+.-.|++| |.|..-+.- ..+ --|
T Consensus 146 ~i~~~iR~ff~~~gFiEV~TP~L~~s~~--e--g----a~-~f~v~~~~~~~~~~~L~qS--pql~kq~l~--~~g-~~r 211 (588)
T PRK00476 146 KVTSAIRNFLDDNGFLEIETPILTKSTP--E--G----AR-DYLVPSRVHPGKFYALPQS--PQLFKQLLM--VAG-FDR 211 (588)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeecCCC--C--C----Cc-cceecccccCCceeecCCC--HHHHHHHHH--hcc-cCc
Confidence 4677899999999999999999985331 1 1 00 1111110 11122235554 333222111 011 258
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
+||||+||+.++.......|.+.|-+=+++. ++.++....+.++.
T Consensus 212 vfqi~~~FR~E~~~~~r~~EFt~le~e~af~--~~~dvm~~~E~li~ 256 (588)
T PRK00476 212 YYQIARCFRDEDLRADRQPEFTQIDIEMSFV--TQEDVMALMEGLIR 256 (588)
T ss_pred eEEEeceeecCCCCCCcCcccccceeeecCC--CHHHHHHHHHHHHH
Confidence 9999999998663322112555665544442 35566655555443
No 108
>PLN02903 aminoacyl-tRNA ligase
Probab=63.56 E-value=43 Score=37.94 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHH-CCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQ-AGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~-~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|.. .||.||-|.-++.... + | ..+.+...+-...+.-.|++| |.|..-+. ...+ -=|
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~--e--G----ardf~v~~~~~~g~~y~L~qS--PQlykQ~L--m~~G-~~R 274 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTP--E--G----ARDYLVPSRVQPGTFYALPQS--PQLFKQML--MVSG-FDR 274 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCC--C--C----CcccEEeeecCCCcccccCCC--HHHHHHHH--Hhcc-CCc
Confidence 467789999997 9999999999885431 0 1 011111111001122235554 33332211 1111 247
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
+||||+||+.++.+.....|.+.|-+=++.. ++.++-...+.++.
T Consensus 275 vFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~--d~~dvm~~~E~li~ 319 (652)
T PLN02903 275 YYQIARCFRDEDLRADRQPEFTQLDMELAFT--PLEDMLKLNEDLIR 319 (652)
T ss_pred EEEEehhhccCCCCCCcccceeeeeeeecCC--CHHHHHHHHHHHHH
Confidence 8999999997765432223455565544432 35666666655443
No 109
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=61.33 E-value=17 Score=39.27 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHH--CCCeEeeccceechhhhHHHhcccCCCC-CcEE--------------------------------
Q psy15928 4 NKLSDQLRGDIAQ--AGFTEVLTFALCSRDDVSVKLRQKMEDI-PAVH-------------------------------- 48 (485)
Q Consensus 4 ~~~~~klr~~L~~--~Gf~Evitysf~s~~~~~~~~~~~~~~~-~~v~-------------------------------- 48 (485)
+.+++..|+.+.. .||.||.|..+...+- +++-|.-.... ..+.
T Consensus 42 ~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l-~~~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~ 120 (456)
T PRK04173 42 NNIKRAWWKSFVQEREDVVGIDSPIIMPPEV-WEASGHVDNFSDPLVECKKCKKRYRADHLIEELGIDAEGLSNEELKEL 120 (456)
T ss_pred HHHHHHHHHHHHhccCCEEEEeccccCCHHH-HhhcCCccccCCceeEeCCCCCEeechhhhHHHhhhhccccHHHHHHH
Confidence 4577788888887 7999999999998774 46666311000 0111
Q ss_pred -----eeCC-------------------------CchhhhhhhhhchHHHHHHHHHhcC--C-CCCeeEEEeCcEEecCC
Q psy15928 49 -----IGNP-------------------------KTLEFQIARTTLVPGLLKTLAANKK--M-PLPLKLFEISDIVYKDA 95 (485)
Q Consensus 49 -----I~NP-------------------------ls~e~s~LR~SLlpgLLe~~~~N~~--~-~~~~rlFEiG~Vf~~~~ 95 (485)
+.-| -+.+..+|||-.-.|++-..+...+ | ..|++++|+|+||+.+.
T Consensus 121 ~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~ 200 (456)
T PRK04173 121 IRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEI 200 (456)
T ss_pred HHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCcc
Confidence 2123 1234567888888888877776644 3 35999999999999764
Q ss_pred c
Q psy15928 96 T 96 (485)
Q Consensus 96 ~ 96 (485)
.
T Consensus 201 s 201 (456)
T PRK04173 201 T 201 (456)
T ss_pred C
Confidence 3
No 110
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=60.49 E-value=68 Score=30.59 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=67.9
Q ss_pred ceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCcceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCcc
Q psy15928 298 RISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQ 377 (485)
Q Consensus 298 ~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~ 377 (485)
.|.-...++.++.-|.+. .+..+...+-.+....... + . ......++++.|.|-.|.
T Consensus 28 ~v~~k~n~l~I~i~G~~~-eike~~~~Ik~~~~~vr~k----------~-----~-----~~g~~~y~l~~i~r~a~~-- 84 (190)
T PF09840_consen 28 YVEVKGNSLKIEIQGYEK-EIKEAIRRIKELVRRVRSK----------Y-----N-----KRGLYRYSLDDIFREAGY-- 84 (190)
T ss_pred EEEEeCCEEEEEEecChH-HHHHHHHHHHHHHHHHHHH----------h-----c-----cCCceEEcHHHHHHHcCC--
Confidence 344455778888888876 4444444333333322110 0 0 113457789999999998
Q ss_pred CCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhc
Q psy15928 378 GGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYG 451 (485)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yG 451 (485)
.++.+-+.+.|+.+|+.+... ++.+...+| +.--.++++++.++|-
T Consensus 85 ---------------------~vp~d~L~~~L~~~G~~ae~~--~~~i~T~a~-----~eev~~l~~~Lse~~~ 130 (190)
T PF09840_consen 85 ---------------------PVPPDLLVDALKLLGYKAEYR--EDVIKTDAP-----LEEVVELAERLSEIYK 130 (190)
T ss_pred ---------------------CCCHHHHHHHHHhCCCeeEEe--CCeEEecCC-----HHHHHHHHHHHHHHHH
Confidence 999999999999999999874 444444433 4556678888888874
No 111
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=60.00 E-value=3.6 Score=44.06 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=23.8
Q ss_pred hHhhhccCCCCCCCC--------CcccccccceeE
Q psy15928 446 IAIAYGYNNIPKTMP--------RFASIARQLFFI 472 (485)
Q Consensus 446 i~r~yGy~~i~~~~p--------~~~~~~~~~~~~ 472 (485)
|+|.||||+|++.+| ...++|+.++++
T Consensus 209 v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~ 243 (453)
T TIGR02367 209 LNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLG 243 (453)
T ss_pred hHHhccccccCcccCcccccccccccccCcccHHH
Confidence 499999999999999 888999887654
No 112
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=56.52 E-value=36 Score=36.14 Aligned_cols=106 Identities=14% Similarity=0.028 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
..+.+++++.+...||..|.|..+---+-+....+- ......+++.+..++. -+||+=+++..-.....-.+. .+.|
T Consensus 21 ~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~-~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~~~~~-~P~R 97 (390)
T COG3705 21 EEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE-DLRRRLFKLEDETGGR-LGLRPDFTIPVARIHATLLAG-TPLR 97 (390)
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhhhhhccch-hhhhhheEEecCCCCe-EEecccccHHHHHHHHHhcCC-CCce
Confidence 467888999999999999999877644322111110 0124578999999988 899999999999998887666 5899
Q ss_pred EEEeCcEEecCCccccccc-cceEEEEEEec
Q psy15928 84 LFEISDIVYKDATAEVGAR-NQRNLVAVYYN 113 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~-e~~~l~~~l~G 113 (485)
+-=-|+||+...+ ..+.. |...+++=+.|
T Consensus 98 l~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEllG 127 (390)
T COG3705 98 LSYAGKVFRAREG-RHGRRAEFLQAGIELLG 127 (390)
T ss_pred eeecchhhhcchh-ccCcccchhhhhhHHhC
Confidence 9999999997622 22222 44455554444
No 113
>KOG1936|consensus
Probab=55.51 E-value=68 Score=34.42 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+-..+++.+...|..++=|..|--.+.+....|- +...|.=.---.-|.-.||.-|++.+..-++-|. -.+++.
T Consensus 79 ~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGE---dskLiYdlkDQGGEl~SLRYDLTVPfARylAmNk--i~sikR 153 (518)
T KOG1936|consen 79 KIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGE---DSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNK--ITSIKR 153 (518)
T ss_pred HHHHHHHHHHHHcCCeeccccchhHHHHHhhhccc---ccceeEehhhcCCcEEEeecccccHHHHHHHHcc--ccccee
Confidence 34567888999999999999888766543333331 1222222223355677899999999999999992 336999
Q ss_pred EEeCcEEecCCcccc-c-cccceEEEEEEecCCC---ChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 85 FEISDIVYKDATAEV-G-ARNQRNLVAVYYNKSP---GFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 85 FEiG~Vf~~~~~~~~-~-~~e~~~l~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
|-||+||+++...-+ | .+|....-+=++|... +-.+.-..+.++++.|++. |..- +
T Consensus 154 y~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Ig-d~~i-----------------K- 214 (518)
T KOG1936|consen 154 YHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIG-DYGI-----------------K- 214 (518)
T ss_pred eeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCcc-ceEE-----------------E-
Confidence 999999998764211 1 2333333333445332 2345556666788888875 1000 0
Q ss_pred CHHHHHHHHHHHHHHhCCCCC
Q psy15928 160 GFEIIHGLLDRVMQLLQIPLD 180 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~~~ 180 (485)
..=.-+++.+|+.+|++..
T Consensus 215 --vNhRkiLdgmf~v~GVp~~ 233 (518)
T KOG1936|consen 215 --VNHRKILDGMFAVCGVPED 233 (518)
T ss_pred --ecHHHHHHHHHHHhCCCHH
Confidence 1123688888899998743
No 114
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.46 E-value=18 Score=40.37 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccC-CCCCcEEeeCCCch-hhhhhhhhchHHHHHHHHHhcC-C-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EDIPAVHIGNPKTL-EFQIARTTLVPGLLKTLAANKK-M-P 79 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~-~~~~~v~I~NPls~-e~s~LR~SLlpgLLe~~~~N~~-~-~ 79 (485)
+.+++-+|..+...||+||.|..+.+.+. .+.-|.-. ...+..... +. +.=.+|+.-=|+.+...+.-.. . .
T Consensus 224 ~~le~y~~~~~~~~Gy~~V~TP~~~~~~l-~~~SGH~~~y~e~mf~~~---~~~~~~~lKpmNCpgh~~ifk~~~~SYR~ 299 (589)
T COG0441 224 NLLEDYVRTKLRSYGYQEVKTPVLADLEL-WELSGHWDNYKEDMFLTE---SDDREYALKPMNCPGHILIFKSGLRSYRE 299 (589)
T ss_pred HHHHHHHHHHHHhcCceEecCCeeeeccc-chhccchhhccccceeec---cCChhheeeeccCHhHHHHHhcCCcceec
Confidence 45778889999999999999999998764 34433211 112222221 11 3347899999999999877754 2 4
Q ss_pred CCeeEEEeCcEEecCCccc
Q psy15928 80 LPLKLFEISDIVYKDATAE 98 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~ 98 (485)
.++|++|.|.||+.+..+.
T Consensus 300 LP~r~~E~g~v~R~E~SGa 318 (589)
T COG0441 300 LPLRLAEFGYVYRYEKSGA 318 (589)
T ss_pred cchhhhhcceeecccCcch
Confidence 6899999999999776543
No 115
>PLN02221 asparaginyl-tRNA synthetase
Probab=43.96 E-value=1.4e+02 Score=33.42 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechh
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRD 31 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~ 31 (485)
.+.+.+|++|...||.|+-|.-+++..
T Consensus 176 ~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 176 ALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 456778999999999999999998765
No 116
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=41.96 E-value=24 Score=28.00 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEE
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFI 308 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~Ill 308 (485)
+..|++++++. +++++|+--+....++++|+.+-|
T Consensus 38 ~~~Pll~~~~~-iv~v~g~~~~~~~~~~~~~~~~~i 72 (74)
T PF11734_consen 38 DRLPLLCDGGE-IVWVPGLRVSERFSADPNTKGWRI 72 (74)
T ss_dssp CCSEEEEETTE-EEEETTTEEBCCGC-SSSS--EEE
T ss_pred CcEEEEEECCE-EEEEeCeeeChhheecCCCCcEEE
Confidence 57899999887 589999999999999999987744
No 117
>KOG0556|consensus
Probab=39.38 E-value=66 Score=34.30 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeEE
Q psy15928 6 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLF 85 (485)
Q Consensus 6 ~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rlF 85 (485)
+....|++|...||.|+.|.-+++...- | .....++.-- ..-.+|-+| |.|.+..+-=- .--|.|
T Consensus 234 vc~~FRe~L~~kgF~EIhTpKli~asSE----G----GanvF~v~Yf--k~~A~LAQS--PQLyKQMaI~g---df~rVy 298 (533)
T KOG0556|consen 234 VCFAFREYLRSKGFVEIHTPKLIGASSE----G----GANVFRVSYF--KQKAYLAQS--PQLYKQMAICG---DFERVY 298 (533)
T ss_pred HHHHHHHHHHhcCcceecccccccccCC----C----CceeEEEEec--cCcchhhcC--hHHHHHHHHhc---chhhee
Confidence 4566899999999999999988876531 1 1222333221 123344443 55555443322 124789
Q ss_pred EeCcEEecCCc
Q psy15928 86 EISDIVYKDAT 96 (485)
Q Consensus 86 EiG~Vf~~~~~ 96 (485)
|||.||+.++.
T Consensus 299 eIGpVfRAEdS 309 (533)
T KOG0556|consen 299 EIGPVFRAEDS 309 (533)
T ss_pred eecceeecccc
Confidence 99999997653
No 118
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.61 E-value=4.3e+02 Score=28.49 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHCCCeEeeccceechhhhHHHhc-ccCCCCCcEEeeCCCchhhhhhhhhchHHHH---HHHHHh--cCC-CCCeeE
Q psy15928 12 GDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEDIPAVHIGNPKTLEFQIARTTLVPGLL---KTLAAN--KKM-PLPLKL 84 (485)
Q Consensus 12 ~~L~~~Gf~Evitysf~s~~~~~~~~~-~~~~~~~~v~I~NPls~e~s~LR~SLlpgLL---e~~~~N--~~~-~~~~rl 84 (485)
+..+..||+|+++..++..+.+ ...| +|.-+.+..++.++ .--|+|.-= -++.+| +.. ..++++
T Consensus 186 d~~~~~Gf~e~~~P~lv~~e~m-~gtgqlpkf~e~~y~v~~~--------~~~LipTaEvpl~~l~~~Eil~~~~LP~k~ 256 (429)
T COG0172 186 DLHTKHGFTEVLPPYLVNLESM-FGTGQLPKFEEDLYKVEDP--------DLYLIPTAEVPLTNLHRDEILDEEDLPIKY 256 (429)
T ss_pred HHHHHcCceEeeCceeecHHHh-hccCCCCCCcccceEecCC--------CEEEEecchhhhHHhhcccccccccCCeee
Confidence 3445789999999999998865 3333 33323457788777 334455432 222333 221 248999
Q ss_pred EEeCcEEecCCcc
Q psy15928 85 FEISDIVYKDATA 97 (485)
Q Consensus 85 FEiG~Vf~~~~~~ 97 (485)
+=.+.||+.+.+.
T Consensus 257 ~~~S~cFR~EAGs 269 (429)
T COG0172 257 TAYSPCFRSEAGS 269 (429)
T ss_pred EEEChhhhccccc
Confidence 9999999987653
No 119
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=31.88 E-value=76 Score=25.81 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred cccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEEecCCCeEEEEcCCCCCCC
Q psy15928 357 LKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDI 436 (485)
Q Consensus 357 ~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di 436 (485)
.++|.|..+-..+.+-+|. - ....++|..+||.... .+..+... +.-..|.
T Consensus 27 ~kyR~Ir~~N~~f~~~i~~-----------------------~---~g~~~~L~~~GF~~~~--~~~~~vl~-~~~~~~~ 77 (87)
T PF09409_consen 27 EKYRRIRLSNKTFQEKILP-----------------------V---PGARELLEALGFREVT--DEEFLVLP-EDSEPDL 77 (87)
T ss_dssp CGGGEEETTSHHHHHHTTT-----------------------S---TTHHHHHHHHT-EE-----SSEEE-----TTS-H
T ss_pred ccceEeecCcchHHHHhcC-----------------------C---hhHHHHHHHCCCEEec--CCCEEEEe-cCCcCCH
Confidence 4679999999999999988 2 2277899999999764 23333333 4444454
Q ss_pred Cccchh
Q psy15928 437 IHTCDI 442 (485)
Q Consensus 437 ~~~~Di 442 (485)
.+-...
T Consensus 78 ~~l~~~ 83 (87)
T PF09409_consen 78 QHLQKA 83 (87)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 120
>PF13592 HTH_33: Winged helix-turn helix
Probab=30.64 E-value=46 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHhcCCEEE
Q psy15928 399 SESTDKVASLLTKMCLQTK 417 (485)
Q Consensus 399 ~~~~~~i~~~L~~l~~~~~ 417 (485)
.+|.+-|-++|++|||...
T Consensus 21 ~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 21 KYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred EEcHHHHHHHHHHcCCccc
Confidence 8999999999999998764
No 121
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=28.48 E-value=1.6e+02 Score=30.13 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCch--hhhhhhhhchHHHHHHHHHhcCCCCCe
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTL--EFQIARTTLVPGLLKTLAANKKMPLPL 82 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~--e~s~LR~SLlpgLLe~~~~N~~~~~~~ 82 (485)
.+.+.+|++++..||-||-|..+...--. + .++.. . ...-.-|-.. -.-.|.||-=..|=+-+ +.+ .-
T Consensus 21 ~i~~~iR~FF~erg~lEVeTp~Ls~a~vt-d-~hL~~-F--~Te~~~~~~~~~~~l~L~TSPEy~mKrLL----Aag-~~ 90 (322)
T COG2269 21 AIIAAIRRFFAERGVLEVETPALSVAPVT-D-IHLHP-F--ETEFLGPGGAKGKPLWLHTSPEYHMKRLL----AAG-SG 90 (322)
T ss_pred HHHHHHHHHHHHcCceEecchHhhcCCCC-c-cceee-e--eeEEeccCccccceeeeecCcHHHHHHHH----Hcc-CC
Confidence 46788999999999999988766432100 0 00000 0 0111112211 11234444333333222 223 36
Q ss_pred eEEEeCcEEecCCcc
Q psy15928 83 KLFEISDIVYKDATA 97 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~ 97 (485)
++|.+|+||++.+.+
T Consensus 91 ~ifql~kvfRN~E~G 105 (322)
T COG2269 91 PIFQLGKVFRNEEMG 105 (322)
T ss_pred cchhhhHHHhccccc
Confidence 889999999976543
No 122
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.78 E-value=1e+02 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcC
Q psy15928 362 EVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMC 413 (485)
Q Consensus 362 i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~ 413 (485)
+.++...|.+++|. +.+.|.++|++|.
T Consensus 1 l~mtr~diA~~lG~-------------------------t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 1 LPMTRQDIADYLGL-------------------------TRETVSRILKKLE 27 (32)
T ss_dssp EE--HHHHHHHHTS--------------------------HHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCC-------------------------cHHHHHHHHHHHH
Confidence 35678899999999 6888888888763
No 123
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=23.08 E-value=3.1e+02 Score=21.46 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.6
Q ss_pred CCceEEEEECCEEEEEEE
Q psy15928 197 PQRCANVMLRGSKIGTMG 214 (485)
Q Consensus 197 pgrsa~I~~~g~~iG~iG 214 (485)
.+.||+|+++++.||++-
T Consensus 26 ~~dsaEV~~g~EfiGvi~ 43 (63)
T PF11324_consen 26 KDDSAEVYIGDEFIGVIY 43 (63)
T ss_pred CCCceEEEeCCEEEEEEE
Confidence 356899999999888654
Done!