Query psy15928
Match_columns 485
No_of_seqs 264 out of 2290
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:43:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ica_A Phenylalanyl-tRNA synth 100.0 3.4E-45 1.1E-49 351.5 15.6 200 3-240 6-212 (213)
2 3ig2_A Phenylalanyl-tRNA synth 100.0 5.1E-45 1.8E-49 350.2 13.3 201 3-241 6-213 (213)
3 3pco_B Phenylalanyl-tRNA synth 100.0 2.4E-44 8.4E-49 402.3 9.3 283 4-372 492-777 (795)
4 2rhq_B Phenylalanyl-tRNA synth 100.0 2E-41 6.9E-46 379.7 11.5 221 2-285 494-716 (795)
5 3l4g_B Phenylalanyl-tRNA synth 100.0 1.9E-39 6.6E-44 353.7 21.9 197 2-241 392-589 (589)
6 1b7y_B Phers, protein (phenyla 100.0 1.6E-40 5.4E-45 371.1 13.3 209 2-285 490-700 (785)
7 3l4g_B Phenylalanyl-tRNA synth 100.0 3.6E-38 1.2E-42 343.6 19.7 190 258-470 203-392 (589)
8 2odr_C Phosphoseryl-tRNA synth 100.0 4E-33 1.4E-37 298.9 16.1 279 1-360 65-432 (701)
9 2odr_D Phosphoseryl-tRNA synth 100.0 5.9E-33 2E-37 296.9 16.2 278 1-359 65-431 (685)
10 2odr_B Phosphoseryl-tRNA synth 100.0 1.1E-32 3.8E-37 294.4 17.4 223 1-285 65-375 (648)
11 2odr_A Phosphoseryl-tRNA synth 100.0 1.2E-32 4.1E-37 294.3 17.4 223 1-285 65-375 (665)
12 2du7_A O-phosphoseryl-tRNA syn 100.0 4.3E-33 1.5E-37 296.0 11.6 225 1-287 57-370 (549)
13 2cxi_A Phenylalanyl-tRNA synth 100.0 2.3E-31 7.9E-36 272.3 15.6 165 259-452 183-348 (348)
14 2du3_A O-phosphoseryl-tRNA syn 100.0 1.8E-31 6.3E-36 283.8 13.9 195 2-244 48-337 (534)
15 2rhq_A Phenylalanyl-tRNA synth 100.0 1.9E-30 6.5E-35 260.4 17.2 195 2-250 54-272 (294)
16 3qtc_A Pyrrolysyl-tRNA synthet 100.0 1.2E-29 4.1E-34 254.1 19.1 188 2-250 78-273 (290)
17 3pco_B Phenylalanyl-tRNA synth 100.0 1.2E-29 4E-34 283.9 14.9 165 273-470 299-489 (795)
18 2rhq_B Phenylalanyl-tRNA synth 100.0 2E-29 6.8E-34 282.7 16.8 162 273-469 303-493 (795)
19 1b7y_A Phers, protein (phenyla 100.0 1.9E-28 6.6E-33 250.4 18.3 193 2-245 102-327 (350)
20 1b7y_B Phers, protein (phenyla 100.0 4.4E-29 1.5E-33 278.9 14.5 155 273-462 295-479 (785)
21 3l4g_A Phenylalanyl-tRNA synth 99.9 4.9E-27 1.7E-31 248.8 18.8 201 1-249 225-473 (508)
22 3pco_A Phenylalanyl-tRNA synth 99.9 8.5E-27 2.9E-31 235.7 12.2 189 2-245 108-307 (327)
23 3cmq_A Phenylalanyl-tRNA synth 99.9 4.8E-27 1.6E-31 245.4 7.8 251 1-285 48-334 (415)
24 3dsq_A Pyrrolysyl-tRNA synthet 99.9 1.2E-25 4E-30 224.8 14.9 191 2-244 72-264 (288)
25 3net_A Histidyl-tRNA synthetas 97.3 0.0018 6E-08 68.4 13.1 129 4-135 30-178 (465)
26 3od1_A ATP phosphoribosyltrans 97.3 0.0017 5.8E-08 67.3 12.5 129 4-135 28-159 (400)
27 3rac_A Histidine-tRNA ligase; 97.3 0.0019 6.5E-08 66.3 12.5 130 3-135 40-180 (373)
28 1z7m_A ATP phosphoribosyltrans 97.1 0.0018 6.1E-08 65.8 10.6 109 3-114 39-150 (344)
29 2rhq_A Phenylalanyl-tRNA synth 97.0 0.00019 6.6E-09 71.3 2.3 32 438-469 21-53 (294)
30 3lc0_A Histidyl-tRNA synthetas 96.9 0.0043 1.5E-07 65.3 11.3 129 4-134 47-178 (456)
31 4e51_A Histidine--tRNA ligase; 96.8 0.0065 2.2E-07 64.1 11.3 111 4-114 50-163 (467)
32 1wu7_A Histidyl-tRNA synthetas 96.7 0.0056 1.9E-07 63.7 10.5 130 3-135 23-155 (434)
33 1h4v_B Histidyl-tRNA synthetas 96.7 0.01 3.5E-07 61.4 12.3 131 3-135 20-157 (421)
34 1htt_A Histidyl-tRNA synthetas 96.5 0.012 4.2E-07 60.8 11.2 130 3-134 21-156 (423)
35 2du3_A O-phosphoseryl-tRNA syn 96.5 0.00035 1.2E-08 74.6 -0.9 30 430-459 10-39 (534)
36 1qe0_A Histidyl-tRNA synthetas 96.4 0.0073 2.5E-07 62.4 8.4 131 3-135 19-157 (420)
37 1nnh_A Asparaginyl-tRNA synthe 96.3 0.097 3.3E-06 51.7 16.1 118 4-133 19-141 (294)
38 4g84_A Histidine--tRNA ligase, 96.3 0.025 8.5E-07 59.1 12.4 127 4-135 32-163 (464)
39 4g85_A Histidine-tRNA ligase, 96.3 0.023 7.7E-07 60.6 11.8 127 4-135 85-216 (517)
40 3uh0_A Threonyl-tRNA synthetas 95.5 0.33 1.1E-05 51.0 16.6 207 4-227 68-302 (460)
41 2i4l_A Proline-tRNA ligase; al 95.3 0.047 1.6E-06 57.3 9.4 130 3-135 70-211 (458)
42 1nyr_A Threonyl-tRNA synthetas 95.3 0.033 1.1E-06 61.0 8.4 130 4-135 275-416 (645)
43 3a32_A Probable threonyl-tRNA 95.0 0.054 1.9E-06 57.0 8.8 128 4-134 53-195 (471)
44 2j3l_A Prolyl-tRNA synthetase; 94.8 0.093 3.2E-06 56.5 9.9 131 4-136 51-192 (572)
45 2dq3_A Seryl-tRNA synthetase; 94.0 0.13 4.3E-06 53.6 8.5 127 4-135 176-316 (425)
46 1evl_A Threonyl-tRNA synthetas 93.8 0.075 2.6E-06 54.6 6.3 165 4-178 34-210 (401)
47 1nj8_A Proline-tRNA synthetase 93.8 0.16 5.4E-06 53.3 8.8 132 4-135 42-188 (459)
48 1hc7_A Prolyl-tRNA synthetase; 93.1 0.26 8.8E-06 52.0 9.0 130 4-135 48-193 (477)
49 1qf6_A THRRS, threonyl-tRNA sy 92.6 0.11 3.9E-06 56.8 5.8 184 4-205 275-470 (642)
50 1usy_A ATP phosphoribosyltrans 92.1 0.2 7E-06 48.8 6.4 114 4-135 4-123 (275)
51 1ses_A Seryl-tRNA synthetase; 91.4 0.35 1.2E-05 50.2 7.5 127 4-135 170-312 (421)
52 3ial_A Prolyl-tRNA synthetase; 90.6 1.7 5.9E-05 46.1 12.1 92 4-95 59-156 (518)
53 2dq0_A Seryl-tRNA synthetase; 90.4 0.4 1.4E-05 50.2 6.8 127 4-135 197-337 (455)
54 1nj1_A PROR, proline-tRNA synt 90.1 0.66 2.2E-05 49.2 8.3 131 4-136 75-221 (501)
55 1wyd_A Hypothetical aspartyl-t 90.0 1.3 4.4E-05 46.0 10.2 110 5-132 139-249 (429)
56 1x54_A Asparaginyl-tRNA synthe 89.5 1.1 3.7E-05 46.6 9.2 111 4-132 139-250 (434)
57 3err_A Fusion protein of micro 88.9 1.4 4.6E-05 47.2 9.7 128 4-136 279-422 (536)
58 1n9w_A Aspartyl-tRNA synthetas 88.4 1.3 4.5E-05 45.8 8.9 109 5-130 130-239 (422)
59 3vbb_A Seryl-tRNA synthetase, 88.0 2 6.7E-05 45.7 10.0 131 5-136 206-359 (522)
60 1wle_A Seryl-tRNA synthetase; 87.6 2.1 7.1E-05 45.4 9.9 131 4-136 223-369 (501)
61 3a74_A Lysyl-tRNA synthetase; 87.4 2.2 7.6E-05 45.0 10.0 109 5-129 179-288 (493)
62 3lss_A Seryl-tRNA synthetase; 87.0 1.2 4.3E-05 46.8 7.7 128 5-136 213-357 (484)
63 1e1o_A Lysyl-tRNA synthetase, 86.7 2.5 8.7E-05 44.7 10.0 110 5-130 188-298 (504)
64 2cxi_A Phenylalanyl-tRNA synth 85.3 0.98 3.4E-05 45.6 5.7 70 361-454 3-77 (348)
65 3bju_A Lysyl-tRNA synthetase; 85.1 4.8 0.00016 42.8 11.2 110 5-130 181-291 (521)
66 4hvc_A Bifunctional glutamate/ 84.5 0.7 2.4E-05 49.2 4.4 90 4-94 65-161 (519)
67 3mf2_A BLL0957 protein; aminoa 84.3 2.5 8.4E-05 42.5 8.0 108 5-114 69-202 (346)
68 4ex5_A Lysine--tRNA ligase; st 84.2 5.5 0.00019 42.4 11.1 108 5-129 209-318 (529)
69 3a5y_A GENX, putative lysyl-tR 81.0 6.7 0.00023 39.4 9.9 114 5-132 41-158 (345)
70 3qne_A Seryl-tRNA synthetase, 79.7 3.1 0.0001 43.8 7.0 128 5-136 190-334 (485)
71 1l0w_A Aspartyl-tRNA synthetas 79.2 10 0.00034 40.8 11.1 112 5-132 149-261 (580)
72 1c0a_A Aspartyl tRNA synthetas 78.0 12 0.0004 40.4 11.2 112 5-131 143-254 (585)
73 2xgt_A Asparaginyl-tRNA synthe 77.2 7.2 0.00025 40.4 9.0 107 5-130 137-245 (435)
74 1eov_A ASPRS, aspartyl-tRNA sy 76.9 8.7 0.0003 40.4 9.6 107 5-128 183-291 (487)
75 1ati_A Glycyl-tRNA synthetase; 74.9 6.9 0.00023 41.3 8.2 78 57-135 182-270 (505)
76 3i7f_A Aspartyl-tRNA synthetas 73.5 9.8 0.00033 40.6 8.9 108 5-129 249-358 (548)
77 3nem_A Aspartyl-tRNA synthetas 72.9 9.8 0.00033 39.5 8.6 109 5-129 142-251 (438)
78 3hj7_A TRNA(Ile)-lysidine synt 71.8 2.5 8.4E-05 37.1 3.2 35 273-308 91-126 (142)
79 2zt5_A Glycyl-tRNA synthetase; 71.2 3.3 0.00011 45.6 4.8 40 54-94 236-279 (693)
80 2cja_A Seryl-tRNA synthetase; 70.9 2.8 9.6E-05 44.6 4.0 131 4-135 235-407 (522)
81 4ah6_A Aspartate--tRNA ligase, 67.7 20 0.0007 38.7 9.9 112 5-132 153-265 (617)
82 3m4p_A Ehasnrs, asparaginyl-tR 61.2 33 0.0011 35.6 9.8 108 5-130 161-269 (456)
83 1whz_A Hypothetical protein; a 38.8 65 0.0022 23.9 5.8 52 399-453 4-63 (70)
84 2lxr_A NADH dehydrogenase I su 25.1 47 0.0016 25.6 2.7 34 56-89 5-39 (76)
85 1kn6_A Prohormone convertase 1 21.4 56 0.0019 26.1 2.7 29 423-458 13-41 (90)
No 1
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.4e-45 Score=351.51 Aligned_cols=200 Identities=22% Similarity=0.294 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LP 81 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~ 81 (485)
.+++++++|+.|+++||+|++||||++++. ++.++.. +....|+|+||||+|+++|||||+||||+++++|++|+ .+
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~-~~~~~~~-~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~ 83 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSY-YEGLKSH-PREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLS 83 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GTTCSSS-CGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHH-Hhhhccc-CcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCC
Confidence 578999999999999999999999999986 3666532 12357999999999999999999999999999999985 57
Q ss_pred eeEEEeCcEEecCCccc------cccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhc
Q psy15928 82 LKLFEISDIVYKDATAE------VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYY 155 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~------~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (485)
+||||||+||.+++... .+..|+.+++++++|+..+ .+|+..
T Consensus 84 ~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~----------------------~~w~~~---------- 131 (213)
T 3ica_A 84 LYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVH----------------------NSWAHP---------- 131 (213)
T ss_dssp EEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC---------------------------C----------
T ss_pred eeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCc----------------------ccCCCC----------
Confidence 99999999998754210 1135778999999997532 456553
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEe
Q psy15928 156 NKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEI 235 (485)
Q Consensus 156 ~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei 235 (485)
.++.|||++||+|+++++.+|+... .+++++..+++|||||+|+ +++|+.||++|+|||+++++|||+.++|+|||
T Consensus 132 ~~~~df~d~Kg~ve~ll~~lgi~~~---~~~~~~~~~~~~hpgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~El 207 (213)
T 3ica_A 132 EEPTSVFELKAVVEQVLCRVGIETG---AYTLKTADNDLYASAMEVK-TRSGKLLGTFGTVSTELIKRFEIEQPVYFAEL 207 (213)
T ss_dssp CCBCCHHHHHHHHHHHHHHTTCCGG---GEEEEECCCTTEEEEEEEE-ETTCCEEEEEEEECHHHHHHTTCCSCEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHhCCCcc---ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCCCCCeEEEEE
Confidence 4568999999999999999998621 2788888889999999998 88999999999999999999999999999999
Q ss_pred ccccc
Q psy15928 236 NIEPF 240 (485)
Q Consensus 236 ~ld~L 240 (485)
||+.|
T Consensus 208 dl~~l 212 (213)
T 3ica_A 208 LWDAL 212 (213)
T ss_dssp EHHHH
T ss_pred EhHHh
Confidence 99986
No 2
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=100.00 E-value=5.1e-45 Score=350.23 Aligned_cols=201 Identities=18% Similarity=0.258 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LP 81 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~ 81 (485)
.+++++++|+.|+++||+|++||||++++. ++.++.+ +....|+|+||||+|+++|||||+||||+++++|++|+ .+
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~-~~~~~~~-~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~ 83 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAY-YDGLESY-PSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNAD 83 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGG-GTTCSSS-CGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHH-HHhhccc-CcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCC
Confidence 478999999999999999999999999986 4666542 12357999999999999999999999999999999984 57
Q ss_pred eeEEEeCcEEecCCccc------cccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhc
Q psy15928 82 LKLFEISDIVYKDATAE------VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYY 155 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~------~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (485)
+||||||+||++++... .+..|..+|+++++|+..+ .+|+.+
T Consensus 84 v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~----------------------~~w~~~---------- 131 (213)
T 3ig2_A 84 LKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVS----------------------NSWAHA---------- 131 (213)
T ss_dssp CEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECC----------------------SCC-------------
T ss_pred eeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCcc----------------------ccCCCC----------
Confidence 99999999999764210 1235778999999997531 566553
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEe
Q psy15928 156 NKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEI 235 (485)
Q Consensus 156 ~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei 235 (485)
.++.|||++||+|+++++.+|++.. .+++++..+++|||||+|+ +++|+.||++|+|||+++++|||+.++|+|||
T Consensus 132 ~~~~df~dlKg~ve~ll~~lg~~~~---~~~~~~~~~~~~hPgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~El 207 (213)
T 3ig2_A 132 DENTSVYELKAYVENIFKRLGLDLH---SLVVGNLSDDIYSTALTVN-TKGGKRLATFGVVTKKMLKAFDVDNEVYYADL 207 (213)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTBCGG---GCEEEEECSSSEEEEEEEE-CTTCCEEEEEEEECHHHHHHTTCCEEEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHhCCCcc---ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCcCCCeEEEEE
Confidence 3457899999999999999998621 2678888889999999999 88999999999999999999999999999999
Q ss_pred cccccc
Q psy15928 236 NIEPFN 241 (485)
Q Consensus 236 ~ld~L~ 241 (485)
||+.|.
T Consensus 208 dl~~l~ 213 (213)
T 3ig2_A 208 NWKELM 213 (213)
T ss_dssp ETGGGC
T ss_pred EhHHhC
Confidence 999873
No 3
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=2.4e-44 Score=402.30 Aligned_cols=283 Identities=20% Similarity=0.276 Sum_probs=216.2
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-CCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-~~~ 82 (485)
+++++++|+.|+++||+|++||||++++.. +.++ + ....|+|+||+|+|+++||+||+||||+++++|++|+ .++
T Consensus 492 ~~~~~~~r~~l~~~G~~Evitysf~~~~~~-~~~~-~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v 567 (795)
T 3pco_B 492 DLSLKRVKTLLNDKGYQEVITYSFVDPKVQ-QMIH-P--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRV 567 (795)
T ss_dssp BCCHHHHHHHHHHTTCEECCCCSEECHHHH-HHHS-S--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHHCCCeeeeccCcCCHHHH-HhhC-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 446899999999999999999999999974 6675 2 2457999999999999999999999999999999985 689
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHH
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFE 162 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 162 (485)
||||+|+||.+++....++.|+.+|+++++|.... .+|+.. .++.|||
T Consensus 568 ~lFEiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~----------------------~~w~~~----------~~~~dF~ 615 (795)
T 3pco_B 568 RIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYE----------------------EHWNLA----------KETVDFY 615 (795)
T ss_dssp EEEEEEEEEEECTTSSTTEEEEEEEEEEEESBSSC----------------------SCSSSC----------CCBCCHH
T ss_pred cEEEeeeEEecCCCcccCcchhheEEEEEECCCcc----------------------cccccC----------CCCCCHH
Confidence 99999999997654222356788999999997532 567553 4568999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccccccc
Q psy15928 163 IIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNF 242 (485)
Q Consensus 163 ~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L~~ 242 (485)
++||+++++++.+|+.. .+++++.++++|||||||+|+++|+.||++|+|||+++++|||+.|+|+|||||+.|.+
T Consensus 616 dlKg~ve~ll~~lg~~~----~~~~~~~~~~~~hPGrsA~I~~~g~~iG~~GelHP~v~~~~dl~~~v~~~Eldld~L~~ 691 (795)
T 3pco_B 616 DLKGDLESVLDLTGKLN----EVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLAD 691 (795)
T ss_dssp HHHHHHHHHTTTSSCCS----SCCEECCCCTTEEEEEEEEECTTTSCCEEEEEECTTTTTTTCCCSCEEEEEEEGGGSSB
T ss_pred HHHHHHHHHHHHcCCCc----ceEEEECCCCCCCCCCEEEEEECCEEEEEEEEECHHHHHHcCCCCCEEEEEEEHHHhhc
Confidence 99999999999999731 26788888899999999999999999999999999999999999999999999999974
Q ss_pred cccccCCCCcccccccccccccccccccCCCCCceeecCCCcccccCccccCcccceecCCceEEEEeeccChHhHHHHH
Q psy15928 243 AKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVL 322 (485)
Q Consensus 243 ~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~~al 322 (485)
. ...+|.++ |+||.+++|-..++.-.=-.+.....|.....+++-+
T Consensus 692 ~-----------------~~~~~~~~----skfP~v~RDlA~vv~~~v~~~~i~~~ir~~~~~ll~~------------- 737 (795)
T 3pco_B 692 R-----------------VVPQAREI----SRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVG------------- 737 (795)
T ss_dssp C-----------------CCCCCCCC----CCSCCEEEEEEEEEETTSCHHHHHTTTSSTTTTTEEE-------------
T ss_pred c-----------------cCCCcCCC----CCCCCcceeEEEEeCCCCCHHHHHHHHHHhCcceEEE-------------
Confidence 2 12345555 9999887766543221111111112223233333433
Q ss_pred HHHHHHHHhhcCCcceeeeEEEEccCCceeccCCcccc--eEEeehHHHHhh
Q psy15928 323 DTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVR--KEVVNVKKATKY 372 (485)
Q Consensus 323 ~~~~~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~--~i~~~~~~i~~~ 372 (485)
+.+|+.|.|.++ ++|++|++.++.++ .-++.-+.|+++
T Consensus 738 ---V~lfDvY~g~~i---------~~gkKSla~~l~~r~~~rTLtdeev~~~ 777 (795)
T 3pco_B 738 ---VNLFDVYRGKGV---------AEGYKSLAISLILQDTSRTLEEEEIAAT 777 (795)
T ss_dssp ---EEECCCBCSTTS---------CTTEEEEEEEEEECCSSCCCCHHHHHHH
T ss_pred ---EEEEEEecCCCC---------CCCcEEEEEEEEEECCCCCCCHHHHHHH
Confidence 466777777653 57888888776544 345555555554
No 4
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=2e-41 Score=379.68 Aligned_cols=221 Identities=22% Similarity=0.377 Sum_probs=184.0
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCC-cEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC-
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIP-AVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP- 79 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~-~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~- 79 (485)
|.+++++++|+.|+++||+|++||||+++++. +.|+ + ..+ .++|.||+|+|+++|||||+||||+++++|++|+
T Consensus 494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~-~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~ 569 (795)
T 2rhq_B 494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA-L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKN 569 (795)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC-S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC-C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999999999875 5554 2 245 6999999999999999999999999999999874
Q ss_pred CCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 80 LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
.++||||+|+||++++..+.+ .|.++++++++|+... .+|..+ .++.
T Consensus 570 ~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~----------------------~~w~~~----------~~~~ 616 (795)
T 2rhq_B 570 KDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVV----------------------NAWQGK----------KEEI 616 (795)
T ss_dssp CCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEE----------------------EGGGTE----------EEEC
T ss_pred CCeEEEEEeeEEecCCcccCc-chhhEEEEEEEecccc----------------------ccccCC----------CCCC
Confidence 689999999999964321112 5778999999996421 456332 3458
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEecccc
Q psy15928 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEP 239 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~ 239 (485)
|||++||+++++++.+|++ ++|++..+|+|||||+|+|+++|+.||++|+|||+++++|||+.+ |+|||+|++
T Consensus 617 dF~dlKg~le~ll~~lG~~------~~~~~~~~p~~hPGr~a~I~~~g~~IG~~G~lHP~Vl~~~~l~~~-~afEL~le~ 689 (795)
T 2rhq_B 617 DFFIAKGVVDRVAEKLNLE------FSYKAGKIEGLHPGRTAIVSLEGQDIGFIGELHPQVAADNDLKRT-YVFELNYDA 689 (795)
T ss_dssp CHHHHHHHHHHHHHHHTCC------CEEEECCCTTEEEEEEEEEEETTEEEEEEEEECHHHHHHTTCCSE-EEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------EEEEECCCCcccCCcEEEEEECCEEEEEEEEECHHHHHHcCCCCc-EEEEEEHHH
Confidence 9999999999999999875 467777889999999999999999999999999999999999999 999999999
Q ss_pred ccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcc
Q psy15928 240 FNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 240 L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
|..... . ..+|.++ |+||.+.+|-..+
T Consensus 690 L~~~~~-------------~--~~~~~~~----skfP~v~RDlA~v 716 (795)
T 2rhq_B 690 MMQVAV-------------G--YINYEQI----PKFPGVTRDIALE 716 (795)
T ss_dssp HTTCCC-------------C--SCCCCCC----CSSCCEEEEEECB
T ss_pred Hhhhcc-------------c--CCccCCC----CCCCCcceeEEEE
Confidence 974321 0 1355566 9999888877654
No 5
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=353.66 Aligned_cols=197 Identities=65% Similarity=1.102 Sum_probs=171.5
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
|.+++.+++|+.|+++||+|++||||+++++.++.|+++.+..+.|+|+||+|+|+++|||||+||||+++++|++++.+
T Consensus 392 ~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~ 471 (589)
T 3l4g_B 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLP 471 (589)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 67889999999999999999999999999865577887654456899999999999999999999999999999887668
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCH
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGF 161 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 161 (485)
+||||+|+||++++....+..+.++++++++|+. .+|
T Consensus 472 vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~-------------------------------------------~~f 508 (589)
T 3l4g_B 472 LKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKN-------------------------------------------PGF 508 (589)
T ss_dssp EEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSS-------------------------------------------CCH
T ss_pred eEEEEeeeEEecCCccccCCccccEEEEEEECCC-------------------------------------------CCH
Confidence 9999999999986543334567789999998853 468
Q ss_pred HHHHHHHHHHHHHhCCCCCC-CCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEeccccc
Q psy15928 162 EIIHGLLDRVMQLLQIPLDK-TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240 (485)
Q Consensus 162 ~~lKg~ve~ll~~lgi~~~~-~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~L 240 (485)
+++||+++++++.+|++... ...+.+++..+++|||||||+|+++|+.||++|+|||+++++|||+.|+|+|||||+.|
T Consensus 509 ~~lkg~le~ll~~lg~~~~~~~~~~~~~~~~~~~~hPGr~A~I~~~g~~iG~~GelHP~v~~~~~l~~~v~~~El~l~~l 588 (589)
T 3l4g_B 509 EIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPF 588 (589)
T ss_dssp HHHHHHHHHHHHHTTCCBSTTTTSEEEEECCCTTEEEEEEEEEEETTEEEEEEEEECHHHHHHTTCCSCEEEEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCccccccceEEeccCCCCccCCCEEEEEECCeEEEEEEEECHHHHHHcCCCCCeEEEEEEhHHh
Confidence 89999999999999986310 00277888889999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy15928 241 N 241 (485)
Q Consensus 241 ~ 241 (485)
.
T Consensus 589 ~ 589 (589)
T 3l4g_B 589 L 589 (589)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=1.6e-40 Score=371.13 Aligned_cols=209 Identities=24% Similarity=0.466 Sum_probs=178.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC--
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-- 79 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~-- 79 (485)
|.+++++++|+.|+++||+|++||||++++.. +.|+. ..+.++|.||+|+|+++|||||+||||+++++|++|+
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~---~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~ 565 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRL---DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRP 565 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTC---CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCC---CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCC
Confidence 57889999999999999999999999999864 55532 2456999999999999999999999999999998865
Q ss_pred CCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 80 LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
.++||||+|+||+ + .|.++++++++|+... .+|. + .++.
T Consensus 566 ~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~----------------------~~w~-~----------~~~v 604 (785)
T 1b7y_B 566 ERALLFEVGRVFR-E-------REETHLAGLLFGEGVG----------------------LPWA-K----------ERLS 604 (785)
T ss_dssp SCEEEEEEEEEES-S-------SEEEEEEEEEESSCBS----------------------CSSS-S----------CCBC
T ss_pred CCeEEEEEeeeec-c-------ChhhEEEEEEECCCcc----------------------cccC-c----------cCCc
Confidence 6899999999997 1 4678999999997521 4563 2 4568
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHHHhCCCCCCEEEEEecccc
Q psy15928 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEP 239 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl~~~di~~~v~~~Ei~ld~ 239 (485)
|||++||+++++++.+|+. ++|++..+|+|||||+|+|+++|+.+|++|+|||+++++|||+ ++|+|||+|+
T Consensus 605 df~dlKg~le~ll~~lgi~------~~~~~~~~p~~hPGr~a~I~~~g~~iG~~G~lHP~Vl~~~~l~-~v~afEl~Ld- 676 (785)
T 1b7y_B 605 GYFLLKGYLEALFARLGLA------FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLP- 676 (785)
T ss_dssp SHHHHHHHHHHHHHHHTCC------CEEECCCCTTEEEEEEEEEEETTEEEEEEEEECHHHHHHTTCC-CCEEEEEEES-
T ss_pred CHHHHHHHHHHHHHHcCCc------eEEeecCCCcccCceEEEEEECCEEEEEEEEECHHHHHHCCCC-cEEEEEEEee-
Confidence 9999999999999999984 5787878899999999999999999999999999999999999 9999999999
Q ss_pred ccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcc
Q psy15928 240 FNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 240 L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
|. .. . .+|.++ |+||.+++|-..+
T Consensus 677 L~-~~----------------~-~~~~~~----skfP~v~RDlA~v 700 (785)
T 1b7y_B 677 LP-DK----------------P-LAFQDP----SRHPAAFRDLAVV 700 (785)
T ss_dssp CC-CC----------------C-CCCCCC----CCSCCEEEEECCC
T ss_pred hh-hC----------------c-ccccCC----CCCCCcceeEEEE
Confidence 86 31 1 345555 9999888776643
No 7
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=343.65 Aligned_cols=190 Identities=58% Similarity=0.975 Sum_probs=173.3
Q ss_pred cccccccccccccCCCCCceeecCCCcccccCccccCcccceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCcc
Q psy15928 258 THSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKY 337 (485)
Q Consensus 258 ~~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~~ 337 (485)
++.++++|.+++++.+.||+|+|++++++|+||||||++|+|+++|+|||||+|++||..+..|+++++.|+.++||+++
T Consensus 203 ~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImgG~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~ 282 (589)
T 3l4g_B 203 TDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQF 282 (589)
T ss_dssp TCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEEBSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSS
T ss_pred ccccccccceecccCCCcEEEEECCCCEEEECCccCCccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 46789999999999999999999999767999999999999999999999999999999999999999999999999988
Q ss_pred eeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEE
Q psy15928 338 HVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTK 417 (485)
Q Consensus 338 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~ 417 (485)
.++.++|+++.|..+.+|....+.+.++.++|+++||+ +++.++|.++|++|||++.
T Consensus 283 ~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~llG~-----------------------~i~~~~i~~iL~~Lgf~~~ 339 (589)
T 3l4g_B 283 TVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGI-----------------------RETPENLAKLLTRMYLKSE 339 (589)
T ss_dssp EEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHHTC-----------------------CCCHHHHHHHHHHTTCEEE
T ss_pred eEEEEEEEecCCceEecccccceEEEecHHHHHHhhCC-----------------------CCCHHHHHHHHHHCCCeEE
Confidence 88888887766777778877778899999999999999 9999999999999999997
Q ss_pred EecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCcccccccce
Q psy15928 418 ILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLF 470 (485)
Q Consensus 418 ~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~~~~ 470 (485)
...+++.|.|+||+||+||.+++||||||||+|||||||+++|...+.|+.++
T Consensus 340 ~~~~~~~~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~ 392 (589)
T 3l4g_B 340 VIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFP 392 (589)
T ss_dssp ECSSSSEEEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCH
T ss_pred EcCCCceEEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCH
Confidence 63224569999999999999999999999999999999999998766665544
No 8
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=4e-33 Score=298.88 Aligned_cols=279 Identities=11% Similarity=0.169 Sum_probs=175.5
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CC-cEEeeCCC---------------------c---
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IP-AVHIGNPK---------------------T--- 54 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~-~v~I~NPl---------------------s--- 54 (485)
.|+.++.+++|+.|.++||+|++++.+++..+....++.+.-+ .+ .+.|.||. |
T Consensus 65 HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (701)
T 2odr_C 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (701)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 3789999999999999999999999999887754455332100 12 57788874 1
Q ss_pred -------------------------------------------h---------hhhhhhhhchHHHHHHHHHhcCC-CCC
Q psy15928 55 -------------------------------------------L---------EFQIARTTLVPGLLKTLAANKKM-PLP 81 (485)
Q Consensus 55 -------------------------------------------~---------e~s~LR~SLlpgLLe~~~~N~~~-~~~ 81 (485)
+ ++++|||||+||||.++++|++| +.+
T Consensus 145 ~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~p 224 (701)
T 2odr_C 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (701)
T ss_dssp ---------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCC
Confidence 1 37899999999999999999886 468
Q ss_pred eeEEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 82 LKLFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+|+||+|+||++++. +..+..+.++++++++|+. .|
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~-------------------------------------------vD 261 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG-------------------------------------------VD 261 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT-------------------------------------------CC
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCC-------------------------------------------CC
Confidence 999999999987542 2234567889999999852 57
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCC--CCCccCCceEEEEEC-----C-EEEEEEEeeCHHHHHhCCCCCCEEE
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAAD--NATFFPQRCANVMLR-----G-SKIGTMGVLHPEVLGKFELTLPCSI 232 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~--~~~~hpgrsa~I~~~-----g-~~iG~iG~lhP~vl~~~di~~~v~~ 232 (485)
|+++||+++.+++.+|+. .++|++.+ +++||||++|+|.++ | +.||++|+|||++++++||+.++|+
T Consensus 262 F~DLKGvLE~LL~~LGi~-----~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~A 336 (701)
T 2odr_C 262 INDGKAIAEGLLSQFGFT-----NFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMN 336 (701)
T ss_dssp HHHHHHHHHHHHHTTTCC-----CEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHcCCC-----eEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEE
Confidence 999999999999999874 37888764 678999999999985 4 6999999999999999999999999
Q ss_pred EEeccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcccccCccccCcc-cceecCCceEEEEee
Q psy15928 233 LEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHH-SRISVNTRNIFIECT 311 (485)
Q Consensus 233 ~Ei~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~-s~V~~~Tk~IllE~a 311 (485)
|||+|++|.........+ ....|.++ |+||.+.+|-..++.+..|-.... -++-.+=.+++-+++
T Consensus 337 FELgLErLamlk~gi~DI----------R~~~~~dI----SRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~a~ 402 (701)
T 2odr_C 337 LGLGVERLAMISGNFADV----------REMVYPQF----YEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK 402 (701)
T ss_dssp EEEEHHHHHHHHTTCSCH----------HHHHCGGG----SCCCCCHHHHHHHBCCSSCC--------------------
T ss_pred EEEeHHHHHHHhcCCCcc----------cccccCCc----CCCCccccCEEEEECHHHCCcccccchHHHHHHHHHHHcC
Confidence 999999997643110000 00134444 899988776654432211110000 000000001111111
Q ss_pred ccChHhHHHHHHHHHHHHHhhcCCcceeeeEEEEccCCceeccCCcccc
Q psy15928 312 ATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVR 360 (485)
Q Consensus 312 ~~d~~~~~~al~~~~~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 360 (485)
+ +. .+.+|+.|.|.++ ++|++|++.++.++
T Consensus 403 g---------Le-sV~LFDVYeGe~I---------~eGKKSLAfsLtfr 432 (701)
T 2odr_C 403 D---------LK-SPCELAIEKTFSF---------GKTKKNVKINIFEK 432 (701)
T ss_dssp -------------------------------------------------
T ss_pred C---------CC-eEEEEEEEcCCCC---------CCCceEEEEEEEEE
Confidence 1 22 4789999998764 47778877766443
No 9
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=5.9e-33 Score=296.95 Aligned_cols=278 Identities=12% Similarity=0.164 Sum_probs=175.8
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CC-cEEeeCCCc------------------------
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IP-AVHIGNPKT------------------------ 54 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~-~v~I~NPls------------------------ 54 (485)
.|+.++.+++|+.|.++||+|++++.+++..+....++.+.-+ .+ .+.|.||..
T Consensus 65 HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (685)
T 2odr_D 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (685)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 3789999999999999999999999999887754455332100 12 578888741
Q ss_pred -------------------------------------------h---------hhhhhhhhchHHHHHHHHHhcCC-CCC
Q psy15928 55 -------------------------------------------L---------EFQIARTTLVPGLLKTLAANKKM-PLP 81 (485)
Q Consensus 55 -------------------------------------------~---------e~s~LR~SLlpgLLe~~~~N~~~-~~~ 81 (485)
+ ++++|||||+||||.++++|++| +.+
T Consensus 145 ~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~p 224 (685)
T 2odr_D 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (685)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCC
Confidence 1 37899999999999999999886 468
Q ss_pred eeEEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 82 LKLFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+|+||+|+||++++. +.++..+.++++++++|+. .|
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~-------------------------------------------vD 261 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG-------------------------------------------VD 261 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT-------------------------------------------CC
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCC-------------------------------------------CC
Confidence 999999999987542 2234567889999999852 57
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCC--CCCccCCceEEEEEC-----C-EEEEEEEeeCHHHHHhCCCCCCEEE
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAAD--NATFFPQRCANVMLR-----G-SKIGTMGVLHPEVLGKFELTLPCSI 232 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~--~~~~hpgrsa~I~~~-----g-~~iG~iG~lhP~vl~~~di~~~v~~ 232 (485)
|+++||+++.+++.+|+. .++|++.+ +++||||++|+|.++ | +.||++|+|||++++++||+.++|+
T Consensus 262 F~DLKGvLE~LL~~LGi~-----~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~A 336 (685)
T 2odr_D 262 INDGKAIAEGLLSQFGFT-----NFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMN 336 (685)
T ss_dssp HHHHHHHHHHHHHTTTCC-----CEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHcCCC-----eEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEE
Confidence 999999999999999874 37888764 678999999999985 5 6999999999999999999999999
Q ss_pred EEeccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcccccCccccCcc-cceecCCceEEEEee
Q psy15928 233 LEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHH-SRISVNTRNIFIECT 311 (485)
Q Consensus 233 ~Ei~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~-s~V~~~Tk~IllE~a 311 (485)
|||+|++|.........+ ....|.++ |+||.+.+|-..++.+..|--... -++-.+=.+++-+++
T Consensus 337 FELgLErLamlk~gi~DI----------R~~~~~dI----SRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~a~ 402 (685)
T 2odr_D 337 LGLGVERLAMISGNFADV----------REMVYPQF----YEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK 402 (685)
T ss_dssp EEEEHHHHHHHHTTCSCH----------HHHHCGGG----SCCCCCHHHHHHHEECSSCC--------------------
T ss_pred EEEeHHHHHHHhcCCCcc----------cccccCCc----CCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcC
Confidence 999999997643110000 00134444 899988776654432211110000 000000001111111
Q ss_pred ccChHhHHHHHHHHHHHHHhhcCCcceeeeEEEEccCCceeccCCccc
Q psy15928 312 ATDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKV 359 (485)
Q Consensus 312 ~~d~~~~~~al~~~~~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 359 (485)
+ +. .+.+|+.|.|.++ ++|++|++.++.+
T Consensus 403 g---------Le-sV~LFDVYeGe~I---------~eGKKSLAfsLtf 431 (685)
T 2odr_D 403 D---------LK-SPCELAIEKTFSF---------GKTKKNVKINIFE 431 (685)
T ss_dssp ------------------------------------------------
T ss_pred C---------CC-eEEEEEEEcCCCC---------CCCceEEEEEEEE
Confidence 1 22 4789999998764 5777887776543
No 10
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=1.1e-32 Score=294.36 Aligned_cols=223 Identities=13% Similarity=0.224 Sum_probs=174.4
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CC-cEEeeCCCc------------------------
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IP-AVHIGNPKT------------------------ 54 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~-~v~I~NPls------------------------ 54 (485)
.|+.++.+++|+.|.++||+|++++.+++..+....++.+.-+ .+ .+.|.||..
T Consensus 65 HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (648)
T 2odr_B 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (648)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 3789999999999999999999999999887754455332100 12 578888741
Q ss_pred -------------------------------------------h---------hhhhhhhhchHHHHHHHHHhcCC-CCC
Q psy15928 55 -------------------------------------------L---------EFQIARTTLVPGLLKTLAANKKM-PLP 81 (485)
Q Consensus 55 -------------------------------------------~---------e~s~LR~SLlpgLLe~~~~N~~~-~~~ 81 (485)
+ ++++|||||+||||.++++|++| +.+
T Consensus 145 ~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~~p 224 (648)
T 2odr_B 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (648)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCCCC
Confidence 1 37899999999999999999886 468
Q ss_pred eeEEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 82 LKLFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+|+||+|+||++++. +.++..+.++++++++|+. .|
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~-------------------------------------------vd 261 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG-------------------------------------------VD 261 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT-------------------------------------------CC
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCC-------------------------------------------CC
Confidence 999999999987542 2234567889999999852 57
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCC--CCCccCCceEEEEEC-----C-EEEEEEEeeCHHHHHhCCCCCCEEE
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAAD--NATFFPQRCANVMLR-----G-SKIGTMGVLHPEVLGKFELTLPCSI 232 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~--~~~~hpgrsa~I~~~-----g-~~iG~iG~lhP~vl~~~di~~~v~~ 232 (485)
|+++||+++.+++.+|+. .++|++.+ +++||||++|+|.++ | +.||++|+|||++++++||+.++|+
T Consensus 262 F~DLKGvLE~LL~~LGi~-----~vrfrpse~~~p~yhPGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~V~A 336 (648)
T 2odr_B 262 INDGKAIAEGLLSQFGFT-----NFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMN 336 (648)
T ss_dssp HHHHHHHHHHHHHTTTCC-----CEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHcCCC-----eEEEEECCCCCcCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEE
Confidence 999999999999999874 37888764 678999999999985 5 6999999999999999999999999
Q ss_pred EEeccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcc
Q psy15928 233 LEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 233 ~Ei~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
|||+|++|.........+ ....|.++ |+||.+.+|-..+
T Consensus 337 FELgLErLaml~~gi~DI----------R~~~~~di----SRFPaV~RDIAlV 375 (648)
T 2odr_B 337 LGLGVERLAMISGNFADV----------REMVYPQF----YEHKLNDRNVASM 375 (648)
T ss_dssp EEEEHHHHHHHHTTCSCH----------HHHHCGGG----SCCCCCHHHHHTT
T ss_pred EEEeHHHHHHHhcCCCcc----------cccccCCc----CCCCcccccEEEE
Confidence 999999997643110000 00134444 9999887766543
No 11
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=1.2e-32 Score=294.31 Aligned_cols=223 Identities=13% Similarity=0.227 Sum_probs=174.2
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CC-cEEeeCCC---------------------c---
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IP-AVHIGNPK---------------------T--- 54 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~-~v~I~NPl---------------------s--- 54 (485)
.|+.++.+++|+.|.++||+|++++.+++..+....++.+.-+ .+ .+.|.||. |
T Consensus 65 HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (665)
T 2odr_A 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (665)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 3789999999999999999999999999887754454332100 12 57888874 1
Q ss_pred -------------------------------------------h---------hhhhhhhhchHHHHHHHHHhcCC-CCC
Q psy15928 55 -------------------------------------------L---------EFQIARTTLVPGLLKTLAANKKM-PLP 81 (485)
Q Consensus 55 -------------------------------------------~---------e~s~LR~SLlpgLLe~~~~N~~~-~~~ 81 (485)
+ ++++|||||+||||.++++|++| +.+
T Consensus 145 ~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~R~~~p 224 (665)
T 2odr_A 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (665)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhcCCCC
Confidence 1 37899999999999999999886 468
Q ss_pred eeEEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 82 LKLFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+|+||+|+||++++. +.++..+.++++++++|+. .|
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~-------------------------------------------vd 261 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG-------------------------------------------VD 261 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT-------------------------------------------CC
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCC-------------------------------------------CC
Confidence 999999999987542 2234567889999999852 57
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCC--CCCccCCceEEEEEC-----C-EEEEEEEeeCHHHHHhCCCCCCEEE
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAAD--NATFFPQRCANVMLR-----G-SKIGTMGVLHPEVLGKFELTLPCSI 232 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~--~~~~hpgrsa~I~~~-----g-~~iG~iG~lhP~vl~~~di~~~v~~ 232 (485)
|+++||+++.+++.+|+. .++|++.+ +++||||++|+|.++ | +.||++|+|||++++++||+.++|+
T Consensus 262 F~DLKGvLE~LL~~LGi~-----~vrfrpse~~~p~yhPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~A 336 (665)
T 2odr_A 262 INDGKAIAEGLLSQFGFT-----NFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMN 336 (665)
T ss_dssp HHHHHHHHHHHHHTTTCC-----CEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHcCCC-----eEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEE
Confidence 999999999999999874 37888764 678999999999985 5 6999999999999999999999999
Q ss_pred EEeccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcc
Q psy15928 233 LEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVV 285 (485)
Q Consensus 233 ~Ei~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~i 285 (485)
|||+|++|.........+ ....|.++ |+||.+.+|-..+
T Consensus 337 FELgLErLaml~~gi~DI----------R~~~~~di----SRFPaV~RDIAlV 375 (665)
T 2odr_A 337 LGLGVERLAMISGNFADV----------REMVYPQF----YEHKLNDRNVASM 375 (665)
T ss_dssp EEEEHHHHHHHHTTCSCH----------HHHHCGGG----SCCCCCHHHHHTT
T ss_pred EEEeHHHHHHHhcCCCcc----------cccccCCc----CCCCcccccEEEE
Confidence 999999997643110000 00134444 9999887766543
No 12
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.98 E-value=4.3e-33 Score=295.97 Aligned_cols=225 Identities=14% Similarity=0.219 Sum_probs=174.8
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CC-cEEeeCCC-------------------------
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IP-AVHIGNPK------------------------- 53 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~-~v~I~NPl------------------------- 53 (485)
.|+.++.+++|+.|.++||+|++++.+++..+....++.+.-+ .+ .+.|.||.
T Consensus 57 HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~ 136 (549)
T 2du7_A 57 HPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEK 136 (549)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccch
Confidence 3789999999999999999999999999988754444332100 12 57788873
Q ss_pred -------------------------------------------ch---------hhhhhhhhchHHHHHHHHHhcCC-CC
Q psy15928 54 -------------------------------------------TL---------EFQIARTTLVPGLLKTLAANKKM-PL 80 (485)
Q Consensus 54 -------------------------------------------s~---------e~s~LR~SLlpgLLe~~~~N~~~-~~ 80 (485)
++ ++++|||||+||||.++++|+++ +.
T Consensus 137 ~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~r~~~ 216 (549)
T 2du7_A 137 KERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKL 216 (549)
T ss_dssp SSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSCS
T ss_pred hhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHhcCCC
Confidence 22 58999999999999999999886 46
Q ss_pred CeeEEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCC
Q psy15928 81 PLKLFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSP 159 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (485)
++|+||+|+||++++. +..+..|.++++++++|+. .
T Consensus 217 pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~-------------------------------------------v 253 (549)
T 2du7_A 217 PLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGED-------------------------------------------V 253 (549)
T ss_dssp SEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTT-------------------------------------------C
T ss_pred CeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCC-------------------------------------------C
Confidence 8999999999997542 2234567889999999852 5
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCceEEeeCC--CCCccCCceEEEEEC-----C-EEEEEEEeeCHHHHHhCCCCCCEE
Q psy15928 160 GFEIIHGLLDRVMQLLQIPLDKTEGYCIQAAD--NATFFPQRCANVMLR-----G-SKIGTMGVLHPEVLGKFELTLPCS 231 (485)
Q Consensus 160 ~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~--~~~~hpgrsa~I~~~-----g-~~iG~iG~lhP~vl~~~di~~~v~ 231 (485)
||+++||+++++++.+|+. .++|++.+ +++||||++|+|.++ | +.||++|+|||++++++||+.++|
T Consensus 254 dF~DLKG~Le~ll~~LGi~-----~~rfrps~~~~p~yhPGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~v~ 328 (549)
T 2du7_A 254 SVDDGKVVAEGLLAQFGFT-----KFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVM 328 (549)
T ss_dssp CHHHHHHHHHHHHGGGTCC-----CCCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEE
T ss_pred CHHHHHHHHHHHHHHcCCC-----eEEEEECCCCCcccCCceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCCeE
Confidence 7999999999999999873 25666663 678999999999996 6 799999999999999999999999
Q ss_pred EEEeccccccccccccCCCCcccccccccccccccccccCCCCCceeecCCCcccc
Q psy15928 232 ILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVITDQNGVVLS 287 (485)
Q Consensus 232 ~~Ei~ld~L~~~~~~~~~~s~~~~s~~~~~~~~Y~~l~~~~~~~p~i~D~~~~ils 287 (485)
+|||+|++|.........+ .... +++.|+||.+.+|-..++.
T Consensus 329 aFELgLErL~m~~~~i~dI----------R~~~----~~dlsrFPav~RDlAlvVd 370 (549)
T 2du7_A 329 NLGLGVERLAMIIYGYEDV----------RAMV----YPQFYEYRLSDRDIAGMIR 370 (549)
T ss_dssp EEEEBHHHHHHHHTTCSCS----------HHHH----SSSSSCCCCCHHHHHTTCC
T ss_pred EEEEeHHHHHHHhcCCCcc----------cccc----cCCcccCCcccccEEEEEc
Confidence 9999999997543110000 0012 3444899988877655444
No 13
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.3e-31 Score=272.27 Aligned_cols=165 Identities=34% Similarity=0.588 Sum_probs=146.1
Q ss_pred ccccccccccccCCCCCceeecCCCcccccCccccCccc-ceecCCceEEEEeeccChHhHHHHHHHHHHHHHhhcCCcc
Q psy15928 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHS-RISVNTRNIFIECTATDLTKAKIVLDTLVTMFSQYCEDKY 337 (485)
Q Consensus 259 ~~~~~~Y~~l~~~~~~~p~i~D~~~~ilslaGImg~~~s-~V~~~Tk~IllE~a~~d~~~~~~al~~~~~L~~~~~g~~~ 337 (485)
+.++.+|.++.++.+.+|+|+|+++.++|+||||||..| +|+++|++||+|+||+|+..+..++++++++|.++ |+.
T Consensus 183 ~~~~~ky~~~~~~~~~~~vI~D~~~~vlsl~gi~~g~~sg~Vt~~T~~iliE~ag~d~~~~~~al~~~~~ll~e~-gg~- 260 (348)
T 2cxi_A 183 HEKGREYGHLIKDKQFYPLLIDSEGNVLSMPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAER-GGK- 260 (348)
T ss_dssp SHHHHHHGGGTTTSSSEEEEEETTSCEEEETTTEEBSSSSCCCTTCCSEEEEEEESCHHHHHHHHHHHHHHHHTT-TCE-
T ss_pred hccccccchhhccCCceEEEEECCCCEEEecCeecCCCcCcccCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHh-CCC-
Confidence 556789999999999999999999844899999999999 99999999999999999999999999999999999 443
Q ss_pred eeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEE
Q psy15928 338 HVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTK 417 (485)
Q Consensus 338 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~ 417 (485)
++.+.+.++.+ ....+.+.++.+.++.++|+++||. +++.++|.++|++|||++.
T Consensus 261 -v~~v~~~~~~~-~~~~~~~~~~~i~~~~~~i~~~lG~-----------------------~l~~~~i~~iL~~lg~~~~ 315 (348)
T 2cxi_A 261 -IRSVRVVYKDF-EIETPDLTPKEFEVELDYIRKLSGL-----------------------ELNDGEIKELLEKMMYEVE 315 (348)
T ss_dssp -EEEEEEECSSC-EEEECCCCCEEEEEEHHHHHHHHTC-----------------------CCCHHHHHHHHHHTTCEEE
T ss_pred -ccceEEEecCc-ccccCCCCCeEEEecHHHHHHHhCC-----------------------CCCHHHHHHHHHHcCCeEE
Confidence 46666665433 2334556667999999999999999 9999999999999999997
Q ss_pred EecCCCeEEEEcCCCCCCCCccchhhhhhHhhhcc
Q psy15928 418 ILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGY 452 (485)
Q Consensus 418 ~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy 452 (485)
.. ++.|.|+||+||+||.|++||||||||+|||
T Consensus 316 ~~--~~~~~V~vP~~R~DI~~~~DliEEVaR~yGy 348 (348)
T 2cxi_A 316 IS--RGRAKLKYPAFRDDIMHARDILEDVLIAYGY 348 (348)
T ss_dssp EE--TTEEEEEECTTCCCCCSHHHHHHHHHHHHTC
T ss_pred eC--CCeEEEECCCCcccCCcccHHHHHhHHhcCC
Confidence 53 4569999999999999999999999999998
No 14
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.97 E-value=1.8e-31 Score=283.76 Aligned_cols=195 Identities=19% Similarity=0.302 Sum_probs=161.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhh---hH--------H-HhcccC----------------------------
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDD---VS--------V-KLRQKM---------------------------- 41 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~---~~--------~-~~~~~~---------------------------- 41 (485)
|++++.+++|+.|+++||+|++||+|+++.+ .. + .|.+..
T Consensus 48 p~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n~p~~~Hpar~~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~ 127 (534)
T 2du3_A 48 PLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKP 127 (534)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHHHHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCceEeChhhcccccccchhhhccceeeccCcccccccccchhhhhhhhhccccchhhh
Confidence 7889999999999999999999999999875 21 1 111000
Q ss_pred ---------------CC-------------CCcEEeeCCCchh---------hhhhhhhchHHHHHHHHHhcCC-CCCee
Q psy15928 42 ---------------ED-------------IPAVHIGNPKTLE---------FQIARTTLVPGLLKTLAANKKM-PLPLK 83 (485)
Q Consensus 42 ---------------~~-------------~~~v~I~NPls~e---------~s~LR~SLlpgLLe~~~~N~~~-~~~~r 83 (485)
++ ...++++||+|+| +++|||||+||||+++++|+++ ..++|
T Consensus 128 l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPis~e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvr 207 (534)
T 2du3_A 128 LQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIK 207 (534)
T ss_dssp TTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCTTTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEE
T ss_pred hhhhhhhhhccccccccccccccchhcccccceeeecCCCChhhccccccccccccCccchhhHHHHHHHHHhCCCCCee
Confidence 00 0127899999999 8999999999999999999987 46899
Q ss_pred EEEeCcEEecCCc-cccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHH
Q psy15928 84 LFEISDIVYKDAT-AEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFE 162 (485)
Q Consensus 84 lFEiG~Vf~~~~~-~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 162 (485)
+||+|+||+++.. +..+..+.++++++++|+. .||+
T Consensus 208 LFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~-------------------------------------------vdf~ 244 (534)
T 2du3_A 208 LFSIDRCFRREQGEDATRLYTYFSASCVLVDEE-------------------------------------------LSVD 244 (534)
T ss_dssp EEEEEEEECCCTTCSSSCCSEEEEEEEEEECSS-------------------------------------------CCHH
T ss_pred EEEEeeEEecCccccccccceeeEEEEEEECCC-------------------------------------------CCHH
Confidence 9999999987542 2233567889999998852 4789
Q ss_pred HHHHHHHHHHHHhCCCCCCCCceEEeeCCCC--CccCCceEEEEE-------------CC-EEEEEEEeeCHHHHHhCCC
Q psy15928 163 IIHGLLDRVMQLLQIPLDKTEGYCIQAADNA--TFFPQRCANVML-------------RG-SKIGTMGVLHPEVLGKFEL 226 (485)
Q Consensus 163 ~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~--~~hpgrsa~I~~-------------~g-~~iG~iG~lhP~vl~~~di 226 (485)
++||+++.+++.+|+. .+++++.+++ +||||++|+|++ +| ..||++|++||++++++||
T Consensus 245 dLKgilE~LL~~LGi~-----~~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi 319 (534)
T 2du3_A 245 DGKAVAEALLRQFGFE-----NFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDI 319 (534)
T ss_dssp HHHHHHHHHHGGGTCC-----EEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCC-----eEEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCC
Confidence 9999999999999874 3778887666 599999999988 57 7999999999999999999
Q ss_pred CCCEEEEEeccccccccc
Q psy15928 227 TLPCSILEINIEPFNFAK 244 (485)
Q Consensus 227 ~~~v~~~Ei~ld~L~~~~ 244 (485)
+.++++|||+|++|....
T Consensus 320 ~~~v~afeLgLErLaMl~ 337 (534)
T 2du3_A 320 PYPVMNLGLGVERLAMIL 337 (534)
T ss_dssp CSCEEEEEEEHHHHHHHH
T ss_pred CCcEEEEEecHHHHHHhh
Confidence 999999999999998754
No 15
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.97 E-value=1.9e-30 Score=260.39 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=157.8
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhh-HHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchHHHHHHHHHh
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDV-SVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 75 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~-~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N 75 (485)
|.+++.+++|+.|+++||+|+ +|||++++.. ++.++++.+. .+.+.|. |+++||||++|+|++++++|
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~-----e~~vLRtsl~p~ll~~l~~N 127 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT-----DEILMRTHTSPVQARTMEKR 127 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS-----SSEEECSSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCccccccCCcEEEc-----CcceeeccCHHHHHHHHHhc
Confidence 678899999999999999999 9999988642 2455444221 1145662 89999999999999999999
Q ss_pred cCCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhc
Q psy15928 76 KKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYY 155 (485)
Q Consensus 76 ~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (485)
+ ++.++|+||+|+||++++.+..+..|.++|+++++|+.
T Consensus 128 ~-~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~---------------------------------------- 166 (294)
T 2rhq_A 128 N-GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKN---------------------------------------- 166 (294)
T ss_dssp T-TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESS----------------------------------------
T ss_pred C-CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCC----------------------------------------
Confidence 8 45689999999999975422223357889999998852
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCCCCCCCceEEeeCCCCCccCCceEEEEE---CC-----------EEEEEEEeeCHHH
Q psy15928 156 NKSPGFEIIHGLLDRVMQLL-QIPLDKTEGYCIQAADNATFFPQRCANVML---RG-----------SKIGTMGVLHPEV 220 (485)
Q Consensus 156 ~~~~~f~~lKg~ve~ll~~l-gi~~~~~~~~~~~~~~~~~~hpgrsa~I~~---~g-----------~~iG~iG~lhP~v 220 (485)
.||+++||+++.+++.+ |++. .+++++...|++|||++|+|++ +| +.||++|+|||++
T Consensus 167 ---~df~dlKg~le~ll~~l~g~~~----~~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~vhP~V 239 (294)
T 2rhq_A 167 ---IKMSDLKGTLELVAKKLFGADR----EIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNV 239 (294)
T ss_dssp ---CCHHHHHHHHHHHHHHHHCTTC----CEEEEECCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHH
T ss_pred ---CCHHHHHHHHHHHHHHHhCCCc----EEEEecCcCCCCCCcEEEEEEEEccCCcccccccCCCCeEEEEEeeECHHH
Confidence 57999999999999998 8753 3778887789999999999998 66 5899999999999
Q ss_pred HHhCCCCC---CEEEEEeccccccccccccCCC
Q psy15928 221 LGKFELTL---PCSILEINIEPFNFAKMLYSPF 250 (485)
Q Consensus 221 l~~~di~~---~v~~~Ei~ld~L~~~~~~~~~~ 250 (485)
++++||+. ++|+|||+|++|...+.....+
T Consensus 240 l~~~gl~~~~~~~~afel~le~L~m~~~~i~di 272 (294)
T 2rhq_A 240 LEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDI 272 (294)
T ss_dssp HHTTTCCTTTCEEEEEEECHHHHHHHHHTCCCT
T ss_pred HHHcCCCCCcCeEEEEEEeHHHHHHHHcCCCHH
Confidence 99999985 7999999999998765433333
No 16
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.97 E-value=1.2e-29 Score=254.15 Aligned_cols=188 Identities=17% Similarity=0.191 Sum_probs=151.9
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCch------hhhhhhhhchHHHHHHHHHh
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTL------EFQIARTTLVPGLLKTLAAN 75 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~------e~s~LR~SLlpgLLe~~~~N 75 (485)
|.+++.+.+|+.|.+.||+|++||+|++.+. ++.++.+. .||+++ +..+||||++|+|++++++|
T Consensus 78 ~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~-~~~~~~~~--------~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n 148 (290)
T 3qtc_A 78 YLGKLEREITRFFVDRGFLEIKSPILIPLEY-IERMGIDN--------DTELSKQIFRVDKNFCLRPMLTPNLYNYLRKL 148 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCEEECCCSEEETHH-HHHTTCCT--------TSSGGGGCCEETTTEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCceeeHHH-HHhcCCCc--------CCchhhhheeeCCCeeEcccChHHHHHHHHHh
Confidence 4678999999999999999999999999975 46665432 255554 79999999999999999999
Q ss_pred cCC-CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhh
Q psy15928 76 KKM-PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVY 154 (485)
Q Consensus 76 ~~~-~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (485)
.++ ..++|+||||+||+.+........|.+++++.++|..
T Consensus 149 ~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~--------------------------------------- 189 (290)
T 3qtc_A 149 DRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSG--------------------------------------- 189 (290)
T ss_dssp TTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTT---------------------------------------
T ss_pred hccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCC---------------------------------------
Confidence 876 4689999999999976543233567789999998853
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHH-HhCCCCCCEEEE
Q psy15928 155 YNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVL-GKFELTLPCSIL 233 (485)
Q Consensus 155 ~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl-~~~di~~~v~~~ 233 (485)
.+|+++||+++.+++.+|++ +.+. +++.+|||++|+|+++|+.||+ |+|||+++ ++|||+.++|+|
T Consensus 190 ----~~f~elkg~le~ll~~lGl~------~~~~--~~~~~hpgr~a~i~~~~~~iG~-G~lhP~vl~~~~~i~~~v~~~ 256 (290)
T 3qtc_A 190 ----CTRENLESIITDFLNHLGID------FKIV--GDSCMVFGDTLDVMHGDLELSS-ALVGPIPLDREWGIDKPWIGA 256 (290)
T ss_dssp ----CCHHHHHHHHHHHHHHHTCC------CEEE--C------CEEEEEEETTEEEEE-EEESCCGGGGGGTCCSCEEEE
T ss_pred ----hHHHHHHHHHHHHHHHcCCC------cEEe--CCCccccCCcccEeeCCEEEEE-EEecHHHHHHhCCCCCceEEE
Confidence 35889999999999999985 4554 5678999999999999999999 99999999 899999999999
Q ss_pred EeccccccccccccCCC
Q psy15928 234 EINIEPFNFAKMLYSPF 250 (485)
Q Consensus 234 Ei~ld~L~~~~~~~~~~ 250 (485)
||||++|.+.......+
T Consensus 257 el~le~l~~~~~~~~di 273 (290)
T 3qtc_A 257 GFGLERLLKVKHDFKNI 273 (290)
T ss_dssp EEEHHHHHHHHHTCSSG
T ss_pred EECHHHHHHHHcCCcHH
Confidence 99999998765433333
No 17
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.96 E-value=1.2e-29 Score=283.88 Aligned_cols=165 Identities=21% Similarity=0.304 Sum_probs=140.2
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEee--------------------------ccChHhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECT--------------------------ATDLTKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a--------------------------~~d~~~~~~al~~~~ 326 (485)
+.+++|+|++++ +|+||||||.+|+|+++|++||+|+| |+||+.+..|+++++
T Consensus 299 ~~~lvi~D~~~~-~~lagi~gg~~s~v~~~T~~i~lE~a~f~p~~Ir~tar~~~l~tdas~RfERGvDp~~~~~al~ra~ 377 (795)
T 3pco_B 299 ADTLVIADHNKA-LAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERAT 377 (795)
T ss_dssp TTCCEEECSSSE-EEETTTCCBSTTBCCTTCCCEEEEEEECCGGGSTTHHHHTTCCCHHHHHHHHCCCTTCHHHHHHHHH
T ss_pred CCcEEEEeCCce-EEEccccCCcceeeeCCCCeEEEEEeccCHHHHHHHHHHhCCCchHhhhhhcCCCHHHHHHHHHHHH
Confidence 578999999985 89999999999999999999999999 567788888999999
Q ss_pred HHHHhhcCCcceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHH
Q psy15928 327 TMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVA 406 (485)
Q Consensus 327 ~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 406 (485)
.|+.++||+.+ +.+...++. .+....+.+.++.++|+++||+ +++.++|.
T Consensus 378 ~Li~e~~gg~v--~~v~~~~~~-----~~~~~~~~i~l~~~~i~~~lG~-----------------------~i~~~~i~ 427 (795)
T 3pco_B 378 RLLIDICGGEA--GPVIDITNE-----ATLPKRATITLRRSKLDRLIGH-----------------------HIADEQVT 427 (795)
T ss_dssp HHHHTTSSCEE--EEEEEEECT-----TTSCCCCEEEEEHHHHHHHHSS-----------------------CCCHHHHH
T ss_pred HHHHHHhCCeE--EEEEEeCCc-----cCCCCCeEEEecHHHHHHHhCC-----------------------CCCHHHHH
Confidence 99999998742 333222110 0122456899999999999999 99999999
Q ss_pred HHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCcccccccce
Q psy15928 407 SLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQLF 470 (485)
Q Consensus 407 ~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~~~~~~~~~ 470 (485)
++|++|||++... ++.|.|+||+||+||.+++||||||||+|||||||+++|...+.++.++
T Consensus 428 ~iL~~Lgf~v~~~--~~~~~V~vPs~R~DI~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~ 489 (795)
T 3pco_B 428 DILRRLGCEVTEG--KDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHR 489 (795)
T ss_dssp HHHHHHTCEEEEE--TTEEEEECCSSCSSCSSHHHHHHHHHHHHCGGGSCCCCCEEECCCCCCC
T ss_pred HHHHHCCCeEEeC--CceEEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCC
Confidence 9999999999763 4569999999999999999999999999999999999998665555443
No 18
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.96 E-value=2e-29 Score=282.68 Aligned_cols=162 Identities=21% Similarity=0.338 Sum_probs=140.5
Q ss_pred CCCceeecCCCcccccCccccCcccceecCCceEEEEee--------------------------ccChHhHHHHHHHHH
Q psy15928 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECT--------------------------ATDLTKAKIVLDTLV 326 (485)
Q Consensus 273 ~~~p~i~D~~~~ilslaGImg~~~s~V~~~Tk~IllE~a--------------------------~~d~~~~~~al~~~~ 326 (485)
+..++|+|++++ +|+||||||.+|+|+++|++||+|+| |+||+.+..|+++++
T Consensus 303 ~~~lvi~D~~~~-~~~agi~gg~~s~v~~~T~~i~le~a~f~p~~Ir~tar~~~l~tdas~RfERGvD~~~~~~al~~~~ 381 (795)
T 2rhq_B 303 DTDIVISNGQEP-IALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVDEAVDRAC 381 (795)
T ss_dssp TTCEEEESSSSE-EEETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHTCCCGGGHHHHHHHHH
T ss_pred CCcEEEEECCCc-eEecceeCCCceeeeCCCCEEEEEEEeeCHHHHHHHHHHcCCCchhhhhhccCCCHHHHHHHHHHHH
Confidence 568899999995 89999999999999999999999999 677888889999999
Q ss_pred HHHHhhcCCcceeeeEEEEccCCceeccCC-cccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHH
Q psy15928 327 TMFSQYCEDKYHVESCEVLRSDGTSARYPE-LKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKV 405 (485)
Q Consensus 327 ~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~-~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 405 (485)
.|+.+++|+.+. .+..+.++. .+.+.+.++.++|+++||. +++.++|
T Consensus 382 ~ll~~~~gg~v~---------~~v~~~~~~~~~~~~i~l~~~~i~~~lG~-----------------------~i~~~~i 429 (795)
T 2rhq_B 382 YLLQELASGEVL---------QDRVSSGDLGSFVTPIDITAEKVNKTIGF-----------------------NLSNDEI 429 (795)
T ss_dssp HHHHHHSCCEEC---------BCCEEEECCCCSEEEEEEEHHHHHHHHTC-----------------------CCCHHHH
T ss_pred HHHHHHcCCccc---------cceEEccCCCCCCeeEEecHHHHHHHhCC-----------------------CCCHHHH
Confidence 999999987531 334444542 4567899999999999999 9999999
Q ss_pred HHHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCC-c-ccccccc
Q psy15928 406 ASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPR-F-ASIARQL 469 (485)
Q Consensus 406 ~~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~-~-~~~~~~~ 469 (485)
.++|++|||++.. +++.|.|+||+||+||.+++||||||||+|||||||+++|. . .+.|+.+
T Consensus 430 ~~iL~~Lg~~v~~--~~~~~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~tlP~~~~~~~g~~~ 493 (795)
T 2rhq_B 430 QSIFRQLGFETTL--KGETLTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELT 493 (795)
T ss_dssp HHHHHHTTCEEEE--ETTEEEEEEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCC
T ss_pred HHHHHHCCCeEEe--CCceEEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCC
Confidence 9999999999975 34579999999999999999999999999999999999996 3 3444443
No 19
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.96 E-value=1.9e-28 Score=250.38 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=162.6
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhh-hHHHhcccCCC-----CCcEEeeCCCc----------hhhhhhhhhch
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDD-VSVKLRQKMED-----IPAVHIGNPKT----------LEFQIARTTLV 65 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~-~~~~~~~~~~~-----~~~v~I~NPls----------~e~s~LR~SLl 65 (485)
|++++.+++|++|+++||+|++ |+++.++. .++.++++.++ .+.+.|.||++ +++++||||++
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~ts 180 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSST
T ss_pred HHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccch
Confidence 7889999999999999999999 88987754 23566665321 34689999999 69999999999
Q ss_pred HHHHHHHHHhcCCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccc
Q psy15928 66 PGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCAR 145 (485)
Q Consensus 66 pgLLe~~~~N~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (485)
|+++++++++ ..++|+||+|+||++++.+..+..|.++++++++|+.
T Consensus 181 p~llr~l~~~---~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~------------------------------ 227 (350)
T 1b7y_A 181 PMQVRYMVAH---TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEG------------------------------ 227 (350)
T ss_dssp HHHHHHHHHC---CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETT------------------------------
T ss_pred HHHHHHHHhc---CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCC------------------------------
Confidence 9999999984 4479999999999976523334567889999998852
Q ss_pred cccchhhhhcCCCCCHHHHHHHHHHHHHHh-CCCCCCCCceEEeeCCCCCccCCceEEEEE--CC--EEEEEEEeeCHHH
Q psy15928 146 NQRNLVAVYYNKSPGFEIIHGLLDRVMQLL-QIPLDKTEGYCIQAADNATFFPQRCANVML--RG--SKIGTMGVLHPEV 220 (485)
Q Consensus 146 ~~~~~~~~~~~~~~~f~~lKg~ve~ll~~l-gi~~~~~~~~~~~~~~~~~~hpgrsa~I~~--~g--~~iG~iG~lhP~v 220 (485)
.||+++||+++.+++.+ |.+. .++|++..+|++|||++++|++ +| ..||.+|+|||+|
T Consensus 228 -------------v~f~dLKg~le~ll~~lfG~~~----~~r~rps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~VhP~V 290 (350)
T 1b7y_A 228 -------------IAMAHLKGAIYELAQALFGPDS----KVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKV 290 (350)
T ss_dssp -------------CCHHHHHHHHHHHHHHHSCSSC----CEEEEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHH
T ss_pred -------------CCHHHHHHHHHHHHHhhcCCCc----eEEEecCCCCCCCCccEEEEEEEeCCCeEEEEEEEEEeHHH
Confidence 57899999999999998 8642 3789888889999999999998 78 6899999999999
Q ss_pred HHhC-------CCCC-----CEEEEEecccccccccc
Q psy15928 221 LGKF-------ELTL-----PCSILEINIEPFNFAKM 245 (485)
Q Consensus 221 l~~~-------di~~-----~v~~~Ei~ld~L~~~~~ 245 (485)
++++ ||+. ++|+|||+|++|...+-
T Consensus 291 l~~~~~~~~~~gid~~~~~~~~~afglglerl~ml~~ 327 (350)
T 1b7y_A 291 FQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRY 327 (350)
T ss_dssp HHHHHHHHHHTTCCCCCTTCEEEEEEEEHHHHHHHHT
T ss_pred HHhhccccccCCCCCccccceEEEEEEeHHHHHHHHc
Confidence 9999 9975 79999999999987643
No 20
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.96 E-value=4.4e-29 Score=278.89 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=137.3
Q ss_pred CCCceeec----CCCcccccCccccCcccceecCCceEEEEee--------------------------ccChHhHHHHH
Q psy15928 273 PVYPVITD----QNGVVLSLPPIINSHHSRISVNTRNIFIECT--------------------------ATDLTKAKIVL 322 (485)
Q Consensus 273 ~~~p~i~D----~~~~ilslaGImg~~~s~V~~~Tk~IllE~a--------------------------~~d~~~~~~al 322 (485)
+..++|+| ++++ +|+||||||.+|+|+++|++||+|+| |+||+.+..|+
T Consensus 295 ~~~lvi~D~~~~~~~~-~~lagi~gg~~s~v~~~T~~i~lE~a~F~p~~Ir~tar~~~l~tdas~RfERGvD~~~~~~al 373 (785)
T 1b7y_B 295 PEDLVIAGWRGEESFP-LGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQ 373 (785)
T ss_dssp TTCEEEEEEETTEEEE-EEETTTEEBTTTBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHHCCCTTCHHHHH
T ss_pred CCcEEEEeccCCCCCe-EEecceeCCCceEeecCCceEEEEEEeeCHHHHHHHHHHcCCCchhhhhhccCCCHHHHHHHH
Confidence 56899999 7774 89999999999999999999999999 67777888899
Q ss_pred HHHHHHHHhhcCCcceeeeEEEEccCCceeccCCcccceEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCH
Q psy15928 323 DTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSEST 402 (485)
Q Consensus 323 ~~~~~L~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (485)
++++.|+.++||+.+. .+..+.++..+.+.+.++.++|+++||. +++.
T Consensus 374 ~~~~~ll~~~~gg~v~---------~~v~~~~~~~~~~~i~l~~~~i~~~lG~-----------------------~i~~ 421 (785)
T 1b7y_B 374 RRALSLLQALAGARVA---------EALLEAGSPKPPEAIPFRPEYANRLLGT-----------------------SYPE 421 (785)
T ss_dssp HHHHHHHHHHSCCEEE---------SCCEEECCCCCCCCEEECHHHHHHHHTC-----------------------CCCH
T ss_pred HHHHHHHHHHcCCccc---------cceEEeccCCCCeeEEecHHHHHHHhCC-----------------------CCCH
Confidence 9999999999987531 3455555544567899999999999999 9999
Q ss_pred HHHHHHHHhcCCEEEEecCCCeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCCCCCc
Q psy15928 403 DKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRF 462 (485)
Q Consensus 403 ~~i~~~L~~l~~~~~~~~~~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~~p~~ 462 (485)
++|.++|++|||++.. +++.|.|+||+||+||.+++||||||||+|||||||+++|..
T Consensus 422 ~~i~~iL~~Lg~~v~~--~~~~~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~~~p~~ 479 (785)
T 1b7y_B 422 AEQIAILKRLGCRVEG--EGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAF 479 (785)
T ss_dssp HHHHHHHHHTTCEEES--SSSSEEEECCTTCCSCCSHHHHHHHHHHHHCGGGSCCCCCCC
T ss_pred HHHHHHHHHCCCeEEe--CCceEEEECCCcccccCCccHHHHHHHHHhCcccCCccCCCc
Confidence 9999999999999963 345699999999999999999999999999999999999965
No 21
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=248.79 Aligned_cols=201 Identities=19% Similarity=0.199 Sum_probs=163.9
Q ss_pred ChhhHHHHHHHHHHHHCCCeEeeccceechh-hhHHHhcccCCC-----CCcEEeeCCCch-------------------
Q psy15928 1 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRD-DVSVKLRQKMED-----IPAVHIGNPKTL------------------- 55 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~Gf~Evitysf~s~~-~~~~~~~~~~~~-----~~~v~I~NPls~------------------- 55 (485)
.|++++.+++|++|.++||+|++|++++..+ +.+++|++|.++ .+.+.|.||++.
T Consensus 225 HPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~ 304 (508)
T 3l4g_A 225 HPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGG 304 (508)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccc
Confidence 3789999999999999999999986666543 345777776543 235899999864
Q ss_pred ---------------hhhhhhhhchHHHHHHHHHhcC-C-CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCCh
Q psy15928 56 ---------------EFQIARTTLVPGLLKTLAANKK-M-PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGF 118 (485)
Q Consensus 56 ---------------e~s~LR~SLlpgLLe~~~~N~~-~-~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~ 118 (485)
+.++|||+++|++++++++|.+ + ..++|+||+|+||+++..+..+..+.+.+.++++|+
T Consensus 305 ~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~---- 380 (508)
T 3l4g_A 305 YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADH---- 380 (508)
T ss_dssp TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEE----
T ss_pred cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECC----
Confidence 5799999999999999999976 3 468999999999998754434445567787777653
Q ss_pred hHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCC
Q psy15928 119 EIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQ 198 (485)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpg 198 (485)
..+|+++||+++.+++.+|+. +++|++...|++||+
T Consensus 381 ---------------------------------------~v~f~dLKg~Le~~l~~lG~~-----~~rfrps~fPftePS 416 (508)
T 3l4g_A 381 ---------------------------------------GLTLGHLMGVLREFFTKLGIT-----QLRFKPAYNPYTEPS 416 (508)
T ss_dssp ---------------------------------------SCCHHHHHHHHHHHHHTTTCC-----CCEEEECCCTTCSSE
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHHcCCc-----ceEeeccCCCCCCCe
Confidence 267999999999999999874 378999889999998
Q ss_pred ceEEEEECC----EEEEEEEeeCHHHHHhCCCC--CCEEEEEeccccccccccccCC
Q psy15928 199 RCANVMLRG----SKIGTMGVLHPEVLGKFELT--LPCSILEINIEPFNFAKMLYSP 249 (485)
Q Consensus 199 rsa~I~~~g----~~iG~iG~lhP~vl~~~di~--~~v~~~Ei~ld~L~~~~~~~~~ 249 (485)
..+.++.+| ..||.+|++||++++++||+ .++|+|||+|++|...+-....
T Consensus 417 ~ev~i~~~G~~~W~EIGg~G~vhP~VL~~~Gipe~~~v~AfgLgLeRLaml~~gi~d 473 (508)
T 3l4g_A 417 MEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINN 473 (508)
T ss_dssp EEEEECCSTTSSCEEEEEEECCCHHHHGGGTCCTTEEEEEEEEESHHHHTTTTTCSC
T ss_pred EEEEEEECCccceEEEEeeeeEcHHHHHHCCCCCCceEEEEEecHHHHHHHHcCCcH
Confidence 888777777 69999999999999999997 3899999999999876533333
No 22
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.94 E-value=8.5e-27 Score=235.74 Aligned_cols=189 Identities=13% Similarity=0.167 Sum_probs=151.7
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCC-----CcEEeeCCCchhhhhhhhhchHHHHHHHHHhc
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDI-----PAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 76 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~-----~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~ 76 (485)
|++++.+++|+.|+++||+|+.+|.+.+..+.++.++++.++. +.+.| + +.++||||++|++++++++|
T Consensus 108 p~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i----~-e~~vLRThtsp~~lr~l~~~- 181 (327)
T 3pco_A 108 PVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF----D-TTRLLRTQTSGVQIRTMKAQ- 181 (327)
T ss_dssp HHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS----S-SSCEECSCTHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe----C-CCceecccCCHHHHHHHHhC-
Confidence 7899999999999999999999999877666668888765431 12333 2 78999999999999999875
Q ss_pred CCCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcC
Q psy15928 77 KMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYN 156 (485)
Q Consensus 77 ~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (485)
+.++|+||+|+||+++. +..+....+.+.+++.|+
T Consensus 182 --~~pirifeiGrVyR~d~-d~th~p~fhqlegl~v~~------------------------------------------ 216 (327)
T 3pco_A 182 --QPPIRIIAPGRVYRNDY-DQTHTPMFHQMEGLIVDT------------------------------------------ 216 (327)
T ss_dssp --CSSCCBCCEECCBCSCC-BTTBCSBCCEEEEEEEET------------------------------------------
T ss_pred --CCCeeEEeeccEEecCC-CcccCCcccEEEEEEECC------------------------------------------
Confidence 34799999999999863 222333445566666553
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEE-CCE--EEEEEEeeCHHHHHhCCCCCC---E
Q psy15928 157 KSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVML-RGS--KIGTMGVLHPEVLGKFELTLP---C 230 (485)
Q Consensus 157 ~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~-~g~--~iG~iG~lhP~vl~~~di~~~---v 230 (485)
.++|+++||+++.+++.+ +.. ..+++|+++..|++|||++|+|++ +|+ .||.+|+|||+|++++||+.+ +
T Consensus 217 -~v~f~dLKg~Le~~l~~l-fg~--~~~vr~rps~fPftePs~eadI~~~~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g 292 (327)
T 3pco_A 217 -NISFTNLKGTLHDFLRNF-FEE--DLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSG 292 (327)
T ss_dssp -TCCHHHHHHHHHHHHHHH-HCS--CSEEEEEEECCTTEEEEEEEEEECSSSCEEEEEEEEEECHHHHHTTTCCTTTCEE
T ss_pred -CCCHHHHHHHHHHHHHHH-hCC--CceEEEecCcCCCCCCcEEEEEEEeCCCeEEEEEEEEECHHHHHHcCCCCccceE
Confidence 367999999999999998 221 014788998899999999999999 675 899999999999999999864 9
Q ss_pred EEEEecccccccccc
Q psy15928 231 SILEINIEPFNFAKM 245 (485)
Q Consensus 231 ~~~Ei~ld~L~~~~~ 245 (485)
|+||+++++|...+-
T Consensus 293 ~AFglgleRlaml~~ 307 (327)
T 3pco_A 293 FAFGMGMERLTMLRY 307 (327)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EEEEechHHHHHHHc
Confidence 999999999987643
No 23
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.93 E-value=4.8e-27 Score=245.42 Aligned_cols=251 Identities=14% Similarity=0.101 Sum_probs=166.6
Q ss_pred ChhhHHHHHHHHHHHHC--------CCeEeec-cceechhhhHHHhcccCCC-----CCcEEeeCCCchhhhhhhhhchH
Q psy15928 1 VPLNKLSDQLRGDIAQA--------GFTEVLT-FALCSRDDVSVKLRQKMED-----IPAVHIGNPKTLEFQIARTTLVP 66 (485)
Q Consensus 1 ~~~~~~~~klr~~L~~~--------Gf~Evit-ysf~s~~~~~~~~~~~~~~-----~~~v~I~NPls~e~s~LR~SLlp 66 (485)
.|+..+.+++|+.|.++ ||+|+.+ +.+++..+.++.|++|.++ .+.+.| | +..+|||+++|
T Consensus 48 hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi-~----~~~vLRThts~ 122 (415)
T 3cmq_A 48 HPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL-N----RTHMLRAHTSA 122 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS-S----SSEEECSSGGG
T ss_pred CHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe-c----CCeEEcCCCcH
Confidence 38899999999999999 9999999 8999998888889887543 112333 2 35899999999
Q ss_pred HHHHHHHHhcCCCCCeeEEEeCcEEecCCccccccccceEEEEEEe---cCCCChhHhhhhHHHHHHhhCC---C-Cccc
Q psy15928 67 GLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYY---NKSPGFEIIHGLLDRVMQLLQI---P-LDKT 139 (485)
Q Consensus 67 gLLe~~~~N~~~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~---G~~~~~~~~~~~~~~~~~~~~~---~-~~~~ 139 (485)
++++.++.|. + |+||+|+||++++.+..+....+.+-++.. |.. |.... + -..+.. . ....
T Consensus 123 ~~~~~l~~~~----~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~--f~~~~---~--~~~la~~~~g~~~~~ 190 (415)
T 3cmq_A 123 HQWDLLHAGL----D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHEL--FAGIK---D--GESLQLFEQSSRSAH 190 (415)
T ss_dssp GHHHHHHTTC----S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHH--TTTST---T--GGGCCSBCCCCCCSS
T ss_pred HHHHHHHHCC----C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccce--ecccc---c--cceEEEEEecCcccc
Confidence 9999998873 3 999999999987543333223332322221 100 00000 0 000000 0 0000
Q ss_pred cccccccccchhhhhcCCCCCHHHHHHHHHHHHHHh-CCCCCCCCceEEeeCCCCCccCCceEEEEECCE---EEEEEEe
Q psy15928 140 EGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL-QIPLDKTEGYCIQAADNATFFPQRCANVMLRGS---KIGTMGV 215 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~l-gi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~---~iG~iG~ 215 (485)
.+|+... ..+ ..+|+++||+++++++.+ |++. .+++++..+|++|||++|+|+++|+ .+|+ |+
T Consensus 191 ~~~~~~~--~~v------d~~f~dlKg~le~ll~~lfg~~~----~~~~~~~~~p~~hPgr~a~I~~~g~wlE~lG~-G~ 257 (415)
T 3cmq_A 191 KQETHTM--EAV------KLVEFDLKQTLTRLMAHLFGDEL----EIRWVDCYFPFTHPSFEMEINFHGEWLEVLGC-GV 257 (415)
T ss_dssp CCTTBCH--HHH------HHHHHHHHHHHHHHHHHHHCTTC----CEEEEEEEETTEEEEEEEEEEETTEEEEEEEE-EE
T ss_pred ccccccc--ccc------cccHHHHHHHHHHHHHHHcCCCc----eEEEecCCCCCCCCceEEEEEECCeeEEEEEE-EE
Confidence 2333210 000 123899999999999996 9853 3778887789999999999999998 9999 99
Q ss_pred eCHHHHHhCCCCCCE-EEEEeccccccccccccCCCCccccc------c---c-ccccccccccccCCCCCceeecCCCc
Q psy15928 216 LHPEVLGKFELTLPC-SILEINIEPFNFAKMLYSPFNSCFSS------Q---T-HSQLKQYLPIIRDSPVYPVITDQNGV 284 (485)
Q Consensus 216 lhP~vl~~~di~~~v-~~~Ei~ld~L~~~~~~~~~~s~~~~s------~---~-~~~~~~Y~~l~~~~~~~p~i~D~~~~ 284 (485)
|||++++++||+.++ |+|||+|++|...+-....+.-|-+. | . ..+..+|.++ |+||.+.+|-..
T Consensus 258 lhP~Vl~~~gl~~~vg~afel~le~l~~~~~~i~DiR~~~~~d~rfl~qf~~~~~~~~~~~~~~----skfP~v~RDla~ 333 (415)
T 3cmq_A 258 MEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPL----SKYPAVINDISF 333 (415)
T ss_dssp ECHHHHHHTTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCC----CCCCCEEEEEEE
T ss_pred eCHHHHHHcCCCCcceEEEEEcHHHHhhhhcCcchhhhhhcccHHHHHhcccccccccccccCc----CCCCCcceeEEE
Confidence 999999999999889 99999999997532111222212111 0 0 0011345555 999988877664
Q ss_pred c
Q psy15928 285 V 285 (485)
Q Consensus 285 i 285 (485)
+
T Consensus 334 ~ 334 (415)
T 3cmq_A 334 W 334 (415)
T ss_dssp E
T ss_pred E
Confidence 3
No 24
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.93 E-value=1.2e-25 Score=224.80 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CC
Q psy15928 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PL 80 (485)
Q Consensus 2 ~~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~ 80 (485)
|++++++.+|+.|.++||+|++||+|++.+. ++..+... +.+.+.+.||++++. +|||++.|+++.++++|.++ +.
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l-~~~~g~~~-~~~m~~~~npl~e~~-~LRp~l~p~l~~~~r~~~~~~~~ 148 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSA-LAKMTIGE-DHPLFSQVFWLDGKK-CLRPMLAPNLYTLWRELERLWDK 148 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HHTTSSCC---CCTTTSCEEETTE-EECSCSHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HhhcCCCc-ccccEEeecccccch-hhhhcChHHHHHHHHHHHhCCCC
Confidence 6789999999999999999999999999875 35554422 113567889999776 99999999999999999664 56
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhhCCCCccccccccccccchhhhhcCCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPG 160 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
++|+||+|+||+.+..+..+..|.+.+++++.|+. ...+
T Consensus 149 PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~-----------------------------------------~~~~ 187 (288)
T 3dsq_A 149 PIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTP-----------------------------------------LEER 187 (288)
T ss_dssp CEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCC-----------------------------------------GGGH
T ss_pred CEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCC-----------------------------------------chhh
Confidence 89999999999987544333457788999988852 1246
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEECCEEEEEEEeeCHHHH-HhCCCCCCEEEEEecccc
Q psy15928 161 FEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVL-GKFELTLPCSILEINIEP 239 (485)
Q Consensus 161 f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~lhP~vl-~~~di~~~v~~~Ei~ld~ 239 (485)
|+++||+++.+++.+|+. .+.+.+... .++++++++..+|..||.+| +||.++ ++|||+.|+++||++|++
T Consensus 188 f~elkg~le~ll~~LGl~-----~~~~~~~s~--e~~~~~~~l~~~~~eig~~G-v~p~vl~~~~gi~~~~~gfglgler 259 (288)
T 3dsq_A 188 HQRLEDMARWVLEAAGIR-----EFELVTESS--VVYGDTVDVMKGDLELASGA-MGPHFLDEKWEIFDPWVGLGFGLER 259 (288)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCEEEECCC--CSSCCCEEEEETTEEEEEEE-EESCTTTTTTTCCSCEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHcCCC-----CcEEecCCc--ceEEEEEEEEeCCEEEEEEE-ecHHHHHHhcCCCCCeEEEEECHHH
Confidence 899999999999999985 256665433 36799999999999999999 999999 999998899999999999
Q ss_pred ccccc
Q psy15928 240 FNFAK 244 (485)
Q Consensus 240 L~~~~ 244 (485)
|....
T Consensus 260 l~m~~ 264 (288)
T 3dsq_A 260 LLMIR 264 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 25
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.30 E-value=0.0018 Score=68.41 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCC-cEEeeCCC--------------chhhhhhhhhchHHH
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIP-AVHIGNPK--------------TLEFQIARTTLVPGL 68 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~-~v~I~NPl--------------s~e~s~LR~SLlpgL 68 (485)
+.+++.+|+.+...||.|+.|..|-..+.+... | . ..+. .+++.+.. +...-+||+-++|++
T Consensus 30 ~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~-~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~ 106 (465)
T 3net_A 30 LYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-N-QGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPL 106 (465)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-C-C--CBEEEEEEEC----------------CCEEECSCSHHHH
T ss_pred HHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-C-CCccceEEEecccccccccccccccCCCCCEEEeCCCChHHH
Confidence 467889999999999999999999887653233 4 2 2344 67776653 245568999999999
Q ss_pred HHHHHHhcCC-CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCChh----HhhhhHHHHHHhhCCC
Q psy15928 69 LKTLAANKKM-PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFE----IIHGLLDRVMQLLQIP 135 (485)
Q Consensus 69 Le~~~~N~~~-~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~----~~~~~~~~~~~~~~~~ 135 (485)
...++.|.+. ..++|+|.+|+||+.+.......+|.+.+++=+.|...... ++-.+..+.++.+|++
T Consensus 107 aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~lgl~ 178 (465)
T 3net_A 107 AAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIG 178 (465)
T ss_dssp HHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHcCCC
Confidence 9999998653 46899999999999754321124566677776777543322 4566666778888875
No 26
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.29 E-value=0.0017 Score=67.25 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~~ 82 (485)
+.+++.+|+.+...||.|+.|..|-..+.. ..-+ ....+..+++..+ +.+.-+||+-++|++...++.|.+. ..++
T Consensus 28 ~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~-~~~g-~~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~ 104 (400)
T 3od1_A 28 KNICDQMTEEINLWGYDMIETPTLEYYETV-GVVS-AILDQQLFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYPL 104 (400)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEETTTH-HHHS-SSCGGGSCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSCE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccccHHHH-hhcC-CccccceEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCCe
Confidence 568899999999999999999999876643 3333 1112345677665 3445589999999999999998754 4689
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
|+|++|+||+.+.......+|.+..++=+.|.... -.++-.+..++++.+|++
T Consensus 105 r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~ 159 (400)
T 3od1_A 105 RLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS 159 (400)
T ss_dssp EEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC
Confidence 99999999996543211245666777767775432 234455566777888874
No 27
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.26 E-value=0.0019 Score=66.27 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-CCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MPL 80 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~~~ 80 (485)
.+.+++.+|+.+...||.|+.|..|...+. +..-+ .... +..+++..+ +.+.-+||+-++|++...++.|.+ +..
T Consensus 40 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~el-~~~~g-~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 40 RRAVETRLLSFVEDAGYEPVTSGLFEYVDT-LLRAR-SPESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHTTS-CTTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCeEEECCceeeHHH-HhhcC-CccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 356889999999999999999999987664 23322 1112 345666655 445568999999999999998864 456
Q ss_pred CeeEEEeCcEEecCCc------cccccccceEEEEEEecCC-CC--hhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDAT------AEVGARNQRNLVAVYYNKS-PG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~------~~~~~~e~~~l~~~l~G~~-~~--~~~~~~~~~~~~~~~~~~ 135 (485)
++|+|++|+||+.+.. .....+|.+..++=+.|.. .. -.++-.+..++++.+|++
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999997643 1112345566777677754 22 234555666777888874
No 28
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.14 E-value=0.0018 Score=65.75 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHH-hcc--cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQ--KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP 79 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~-~~~--~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~ 79 (485)
.+++++.+|+.+...||+|+.|..|...+. +.. ++- ....+..+++..+ +...-+||+-++|++...++.| .+.
T Consensus 39 ~~~i~~~i~~~~~~~Gy~eI~tP~le~~el-~~~s~~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~-~~~ 115 (344)
T 1z7m_A 39 LRQIEGRLRKLFSLKNYQEVMPPSFEYTQL-YTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI-KDS 115 (344)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC-CSC
T ss_pred HHHHHHHHHHHHHHcCCEEecCcccCcHHH-HhhccCCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc-CCC
Confidence 457889999999999999999999887664 333 211 1112346677666 4556689999999999999998 445
Q ss_pred CCeeEEEeCcEEecCCccccccccceEEEEEEecC
Q psy15928 80 LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNK 114 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~ 114 (485)
.++|+|++|+||+.+.......+|.+..++=+.|.
T Consensus 116 ~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~ 150 (344)
T 1z7m_A 116 TSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGE 150 (344)
T ss_dssp CCEEEEEEEECCCCCC-------CCEEEEEEEESS
T ss_pred CCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcC
Confidence 68999999999987532211245556666666664
No 29
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.04 E-value=0.00019 Score=71.34 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.6
Q ss_pred ccchhhhhhHhhhccCCCCCCCCCc-ccccccc
Q psy15928 438 HTCDIYEDIAIAYGYNNIPKTMPRF-ASIARQL 469 (485)
Q Consensus 438 ~~~DiiEei~r~yGy~~i~~~~p~~-~~~~~~~ 469 (485)
-++||||||+|+|||||||.++|.. .+.|..+
T Consensus 21 ~~~DliEEv~R~~gyd~i~~tlp~~~~~~g~~~ 53 (294)
T 2rhq_A 21 MGTELMEKLNQQLAEETIDVTLPSRQISIGSKH 53 (294)
T ss_dssp ----CTTHHHHHTTTTCCCTTSCCCCCCCCCCC
T ss_pred CcchHHHHHHHHhCcccCCccCCCcccCCCCCC
Confidence 4679999999999999999999954 3444443
No 30
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.91 E-value=0.0043 Score=65.34 Aligned_cols=129 Identities=16% Similarity=0.051 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-CCCe
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPL 82 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~~~~ 82 (485)
+.+++.+|+.+...||.|+.|..|-..+......|-. -.+..+++... +.+.-+||+-++|++...+..|... ..++
T Consensus 47 ~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~-~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~ 124 (456)
T 3lc0_A 47 RHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE-ITEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLPA 124 (456)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH-HHHTCEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCCSSE
T ss_pred HHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc-hhhceEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccCCCE
Confidence 4678899999999999999999988765321011110 01245677665 4556689999999999999998653 4589
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCC
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQI 134 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~ 134 (485)
|+|++|.||+.+.......+|.+..++=+.|.... -.++-.+..++++.+|+
T Consensus 125 r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 125 KWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGL 178 (456)
T ss_dssp EEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 99999999997543211245566777777775433 23455566677788887
No 31
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=96.75 E-value=0.0065 Score=64.11 Aligned_cols=111 Identities=7% Similarity=0.031 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC--CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-CCC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME--DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MPL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~--~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~~~ 80 (485)
+.+++.+++.+...||.|+.|..|...+......|-..+ .+..+++...-+.+.-+||+.+.|++...+..|.. ...
T Consensus 50 ~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~l 129 (467)
T 4e51_A 50 EFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDG 129 (467)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccCC
Confidence 467889999999999999999999877643222132111 12455665532144568999999999999988744 346
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecC
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNK 114 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~ 114 (485)
++|+|++|.||+.+.......+|.+..++=+.|.
T Consensus 130 P~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~ 163 (467)
T 4e51_A 130 PKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGF 163 (467)
T ss_dssp CEEEEEEEEEECCCCC---CCSEEEEEEEEEETC
T ss_pred CEEEEEEccEEccCCCCCCCcCceEEEEEEEEeC
Confidence 8999999999986543221234445555555554
No 32
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=96.73 E-value=0.0056 Score=63.73 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHH-hcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
.+++++.+|+.+...||+|+.|..|...+. +.. .|- ...+..+++... +.+.=+|||.+.|++...++.|.....+
T Consensus 23 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~-~~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~~~~lP 99 (434)
T 1wu7_A 23 EKFIFKTAEEAAEAFGFRRIDFPSLEYLDL-YRIKSGE-ELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQRP 99 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETHH-HHTTSCT-TGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTCCSS
T ss_pred HHHHHHHHHHHHHHcCCEEeeccccccHHH-hhhccCC-ccccceEEEECC-CCCEEEeCCCChHHHHHHHHhcCCCCCC
Confidence 357889999999999999999999987654 232 221 111245677665 4456689999999999999988222458
Q ss_pred eeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 82 LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
+|+|.+|.||+.+.......+|.+..++=+.|.... ..++-.+..++++.+|++
T Consensus 100 ~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~ 155 (434)
T 1wu7_A 100 LRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ 155 (434)
T ss_dssp EEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT
T ss_pred eEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCC
Confidence 999999999986532211245555666666665322 234445566778888875
No 33
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=96.71 E-value=0.01 Score=61.37 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHh-cccCC--CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHh-cCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKL-RQKME--DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN-KKM 78 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~~~--~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N-~~~ 78 (485)
.+++++.+|+.+...||+|+.|..|...+.. ..- |-..+ .+..+++... +.+.=+|||-++|++...+..| ...
T Consensus 20 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el~-~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~~ 97 (421)
T 1h4v_B 20 HQRIVATARKVLEAAGALELVTPIFEETQVF-EKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKV 97 (421)
T ss_pred HHHHHHHHHHHHHHcCCEEecccccccHHHh-hhccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhccccc
Confidence 3578899999999999999999999876642 222 21111 1245677655 4556699999999999999877 443
Q ss_pred -CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 79 -PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
..++|+|++|+||+.+.......+|.+..++=+.|.... ..++-.+..++++.+|++
T Consensus 98 ~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 98 WPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLR 157 (421)
T ss_pred cCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCC
Confidence 468999999999986532211134555555545554322 234556666778888875
No 34
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=96.50 E-value=0.012 Score=60.81 Aligned_cols=130 Identities=10% Similarity=0.051 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHh-cccCC--CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKL-RQKME--DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M 78 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~~~--~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~ 78 (485)
.+++++.+|+.+...||+|+.|..|...+. +..- |-..+ .+..+++... +.+.=+|||-+++++...+..|.. +
T Consensus 21 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~ 98 (423)
T 1htt_A 21 WQRIEGTLKNVLGSYGYSEIRLPIVEQTPL-FKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLY 98 (423)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEEHHH-HHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHcCCEEecccccCHHHH-HhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhccccc
Confidence 357889999999999999999999987664 2322 31110 1245777766 455669999999999999987754 3
Q ss_pred CCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQI 134 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~ 134 (485)
..++|+|++|+||+.+.......+|.+..++=+.|.... ..++-.+..++++.+|+
T Consensus 99 ~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl 156 (423)
T 1htt_A 99 NQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGI 156 (423)
T ss_dssp TCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCC
Confidence 568999999999986632211234555666656664332 23445666677888887
No 35
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.46 E-value=0.00035 Score=74.56 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=27.6
Q ss_pred CCCCCCCCccchhhhhhHhhhccCCCCCCC
Q psy15928 430 PPTRHDIIHTCDIYEDIAIAYGYNNIPKTM 459 (485)
Q Consensus 430 P~~R~Di~~~~DiiEei~r~yGy~~i~~~~ 459 (485)
+..|.||.+++|++|||+|+||||++|+++
T Consensus 10 ~~tR~Di~~~~DliEEvaR~yGyd~i~~~~ 39 (534)
T 2du3_A 10 ELAEKDFEAAWKAGKEILAERSPNELYPRV 39 (534)
T ss_dssp HHHHHCHHHHHHHGGGGSCCCCGGGSTTSS
T ss_pred cCChhhcchhhHHHhhhhhccCCCCCCCcc
Confidence 446899999999999999999999999887
No 36
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=96.36 E-value=0.0073 Score=62.44 Aligned_cols=131 Identities=10% Similarity=0.033 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHh-cccC--CCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC--
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKL-RQKM--EDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-- 77 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~~--~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-- 77 (485)
.+.+++.+++.+...||+|+.|..|...+.. ..- |-.. ..+..+++... +.+.-+|||.+.+++...++.+..
T Consensus 19 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~-~~~~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~~ 96 (420)
T 1qe0_A 19 WRYIENQLDELMTFYNYKEIRTPIFESTDLF-ARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQG 96 (420)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHHH-CC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHcCCEEccCcccchHHHh-hhccCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhccccc
Confidence 3568889999999999999999999986532 211 1100 01234555432 334568999999999999987643
Q ss_pred -CCCCeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 78 -MPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 78 -~~~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
+..++|+|.+|+||+.+.......+|.+...+=+.|.... -.++-....++++.+|++
T Consensus 97 ~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~ 157 (420)
T 1qe0_A 97 NPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLK 157 (420)
T ss_dssp CSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCC
Confidence 3458999999999987633221235556666666675432 144556666788888886
No 37
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=96.35 E-value=0.097 Score=51.71 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCC-CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MED-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 81 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~-~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~ 81 (485)
.++.+.+|++|...||.|+-|..+.+..+ .+.-+ ..+ .+...+. -......||+|--- .++.+. ..+ .
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~---~~~~~~~~e~a~~f~~~--~~~~~~~L~~Spe~-~~~~l~---~~g-~ 88 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD---PLWPDPAGEGMEPAEVE--IYGVKMRLTHSMIL-HKQLAI---AMG-L 88 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC---CCCSCTTCCCCCCCEEE--ETTEEEEECSCSHH-HHHHHH---HTT-C
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc---hhccCCCCCcceeEEEE--cCCCCEEeccChHH-HHHHHh---hcC-c
Confidence 35788899999999999999999987711 11111 000 1222221 11123456655422 122222 122 5
Q ss_pred eeEEEeCcEEecCC--cc-ccccccceEEEEEEecCCCChhHhhhhHHHHHHhhC
Q psy15928 82 LKLFEISDIVYKDA--TA-EVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQ 133 (485)
Q Consensus 82 ~rlFEiG~Vf~~~~--~~-~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~~ 133 (485)
.|+|+||+||+.+. .+ ..+..|.+.+.+-++|. ++.++....+.++..+.
T Consensus 89 ~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~--~~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 89 KKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA--KMEDIMRLIERLVYGLF 141 (294)
T ss_dssp CEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHH
T ss_pred cceEEEEccEeCCCCCCCCCccccceeEEEEEecCC--CHHHHHHHHHHHHHHHH
Confidence 79999999999876 32 23334677888888875 37777777777666554
No 38
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=96.32 E-value=0.025 Score=59.11 Aligned_cols=127 Identities=16% Similarity=0.057 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
+.+++.+|+.+...||+|+.|..|-..+......+ .+.+..+++... +.+.=+|||=+++++...++.|. ..++|
T Consensus 32 ~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~k 106 (464)
T 4g84_A 32 EKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNIK 106 (464)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTT--CSCEE
T ss_pred HHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcC--CCCce
Confidence 56889999999999999999999976553211111 111234566555 55666899999999999988874 34799
Q ss_pred EEEeCcEEecCCccc-c-ccccceEEEEEEecCCCC---hhHhhhhHHHHHHhhCCC
Q psy15928 84 LFEISDIVYKDATAE-V-GARNQRNLVAVYYNKSPG---FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~-~-~~~e~~~l~~~l~G~~~~---~~~~~~~~~~~~~~~~~~ 135 (485)
+|.+|.||+.+.... . ..+|.+..++=+.|...+ -.++-.+..++++.+|++
T Consensus 107 ~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~ 163 (464)
T 4g84_A 107 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIG 163 (464)
T ss_dssp EEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCC
Confidence 999999998653211 1 134555666656664322 233444555677888875
No 39
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.27 E-value=0.023 Score=60.60 Aligned_cols=127 Identities=17% Similarity=0.087 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
+.+++.+|+.+...||+|+.|..|-..+.+....|. +.+..+++... +.+.=+||+=+++++...++.|. ..++|
T Consensus 85 ~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge--~~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~k 159 (517)
T 4g85_A 85 EKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGE--DSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNIK 159 (517)
T ss_dssp HHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTT--CSCEE
T ss_pred HHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCc--CcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCC--CCCce
Confidence 468899999999999999999999765532111221 11223455554 55566899999999999988874 34799
Q ss_pred EEEeCcEEecCCccc-cc-cccceEEEEEEecCCCC---hhHhhhhHHHHHHhhCCC
Q psy15928 84 LFEISDIVYKDATAE-VG-ARNQRNLVAVYYNKSPG---FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~-~~-~~e~~~l~~~l~G~~~~---~~~~~~~~~~~~~~~~~~ 135 (485)
+|++|.||+.+.... .+ .+|.+..++=+.|...+ -.++-.+..++++.+|++
T Consensus 160 ~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~ 216 (517)
T 4g85_A 160 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIG 216 (517)
T ss_dssp EEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred eEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 999999998653211 12 35556666666674322 233445556677888875
No 40
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=95.53 E-value=0.33 Score=50.96 Aligned_cols=207 Identities=16% Similarity=0.206 Sum_probs=116.0
Q ss_pred hHHHHHHHHHH-HHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCC-CchhhhhhhhhchHHHHHHHHHhcC-C-
Q psy15928 4 NKLSDQLRGDI-AQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNP-KTLEFQIARTTLVPGLLKTLAANKK-M- 78 (485)
Q Consensus 4 ~~~~~klr~~L-~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NP-ls~e~s~LR~SLlpgLLe~~~~N~~-~- 78 (485)
+.+++.+++.+ ...||+|+.|..|.+.+. ++.-|.-.. .++...+... ...+.-+|||..-|++....+.... +
T Consensus 68 ~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r 146 (460)
T 3uh0_A 68 NKLIEFMKLQQKFKFGFNEVVTPLIYKKTL-WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYN 146 (460)
T ss_dssp HHHHHHHHHHHHHTSCCEECCCCSEEEHHH-HHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGG
T ss_pred HHHHHHHHHHHHHhcCCEEEECCeeccHHH-HHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcccccc
Confidence 46788899999 889999999999999875 344443111 1234454332 1234558999999999887666543 2
Q ss_pred CCCeeEEEeCcEEecCCccc-cc---cccceEEEEEEecCCCC----hhHhhhhHHHHH-HhhCCC---------Ccccc
Q psy15928 79 PLPLKLFEISDIVYKDATAE-VG---ARNQRNLVAVYYNKSPG----FEIIHGLLDRVM-QLLQIP---------LDKTE 140 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~-~~---~~e~~~l~~~l~G~~~~----~~~~~~~~~~~~-~~~~~~---------~~~~~ 140 (485)
..++|++++|.||+.+.... .| .+|.+...+-+.+...+ +.++-.....++ +.||++ +..
T Consensus 147 ~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~-- 224 (460)
T 3uh0_A 147 ELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFI-- 224 (460)
T ss_dssp GCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEE--
T ss_pred ccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEE--
Confidence 45899999999999765431 22 23434444444343211 223445556666 777875 111
Q ss_pred ccccccccchhhhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEE---CC--EEEEEEEe
Q psy15928 141 GYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVML---RG--SKIGTMGV 215 (485)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~---~g--~~iG~iG~ 215 (485)
....+.+ . |.+....+......+...++.+|++ +.+.+..-.+|-| ..++.+ .| ..+|++ +
T Consensus 225 ~l~t~pe----~-~~G~~~~w~~ae~~L~~~l~~~g~~------~~~~~g~gafygp--kid~~~~d~~gr~~q~~Ti-q 290 (460)
T 3uh0_A 225 NFSTRPD----H-FIGDLKVWNHAEQVLKEILEESGKP------WKLNPGDGAFYGP--KLDIMVTDHLRKTHQVATI-Q 290 (460)
T ss_dssp EEECCCS----S-CCSCHHHHHHHHHHHHHHHHHHTCC------EEEETTCSCSSCC--EEEEEEECTTSCEEEEEEE-E
T ss_pred EEccCCc----c-cCCCHHHHHHHHHHHHHHHHHhCCC------eeECCCccccccc--eEEEEEEccCCCeeeeccc-c
Confidence 0001000 0 0000012334445666777888875 5665554455534 455544 12 345665 4
Q ss_pred eCHHHHHhCCCC
Q psy15928 216 LHPEVLGKFELT 227 (485)
Q Consensus 216 lhP~vl~~~di~ 227 (485)
|.=..-+.||+.
T Consensus 291 ld~~~~~rf~l~ 302 (460)
T 3uh0_A 291 LDFQLPERFDLK 302 (460)
T ss_dssp EESHHHHHTTCC
T ss_pred cccccccccceE
Confidence 544555677765
No 41
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=95.35 E-value=0.047 Score=57.29 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhh---chHHHHHHHHHhcCC
Q psy15928 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTT---LVPGLLKTLAANKKM 78 (485)
Q Consensus 3 ~~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~S---LlpgLLe~~~~N~~~ 78 (485)
.+++++.+|+.+...||+|+.|..|...+. ++.-+. +...+..+++... ....-+|||+ +++++......+.+
T Consensus 70 ~~~i~~~ir~~~~~~G~~ei~tP~l~~~el-~~~sg~~d~~~~em~~~~d~-~~~~~~LrPt~ee~t~~i~r~~~~s~~- 146 (458)
T 2i4l_A 70 LKKIEQIVREEQNRAGAIELLMPTLQLADL-WRESGRYDAYGPEMLRIADR-HKRELLYGPTNEEMITEIFRAYIKSYK- 146 (458)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSCTTSEEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGG-
T ss_pred HHHHHHHHHHHHHHcCCEEEEcCccCcHHH-HHhcCCccccccceEEEEeC-CCCeEEECCCChHHHHHHHHHHHhhcc-
Confidence 357888999999999999999999998764 344332 0112345666554 2334589994 66677666555432
Q ss_pred CCCeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC-----ChhHhhhhHHHHHHhhCCC
Q psy15928 79 PLPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~ 135 (485)
..++|+|++|++|+.+.....| .+|.+...+-+.|... .+..+.....++++.+|++
T Consensus 147 ~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~ 211 (458)
T 2i4l_A 147 SLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLK 211 (458)
T ss_dssp GCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4689999999999976222122 3455566666666321 1333445566777888876
No 42
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=95.32 E-value=0.033 Score=61.03 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCCCCcEEeeCCCch-hhhhhhhhchHHHHHHHHHhcC--CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEDIPAVHIGNPKTL-EFQIARTTLVPGLLKTLAANKK--MP 79 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~~~~v~I~NPls~-e~s~LR~SLlpgLLe~~~~N~~--~~ 79 (485)
+.+++.+|+.+...||+|+.|..|...+. ++.-|.. .-.+..+++.. ... +.-+|||...|++....+.+.. +.
T Consensus 275 ~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l-~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~~~~syr~ 352 (645)
T 1nyr_A 275 REIERYIVDKEVSMGYDHVYTPVLANVDL-YKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKPHSYRE 352 (645)
T ss_dssp HHHHHHHHHHHHHTTEEECBCCSEEETHH-HHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSCCBGGG
T ss_pred HHHHHHHHHHHHHcCCEEEECCeeccHHH-HhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHhhhhhccC
Confidence 56788899999999999999999998874 3443310 01122333211 122 3457999999999999988855 24
Q ss_pred CCeeEEEeCcEEecCCccc-cc---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 80 LPLKLFEISDIVYKDATAE-VG---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~-~~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
.++|+|++|+||+.+.... .| .+|.+...+-+.|... .|.++-....++++.||++
T Consensus 353 LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~ 416 (645)
T 1nyr_A 353 LPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE 416 (645)
T ss_dssp CCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6899999999999765422 12 2444555555555422 2566677778899999984
No 43
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=95.05 E-value=0.054 Score=57.03 Aligned_cols=128 Identities=14% Similarity=0.067 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC--C--
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M-- 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~--~-- 78 (485)
+.+++.+|+.+...||+|+.|..|...+. +..-+. +.-.+..+++ --..+.-+|||...+++....+.+.+ +
T Consensus 53 ~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~ 129 (471)
T 3a32_A 53 YALAEVLAKFHARRGYYVVETPIIASTEL-FKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKHRSK 129 (471)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCCEEEECCeeeehHH-hhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhcccc
Confidence 46788899999999999999999998875 344331 1001234555 12345568999999999999988843 2
Q ss_pred -CCCeeEEEeCcEEecCCccc-cc---cccceEEEEEEecCCCC----hhHhhhhHHHHHHh-hCC
Q psy15928 79 -PLPLKLFEISDIVYKDATAE-VG---ARNQRNLVAVYYNKSPG----FEIIHGLLDRVMQL-LQI 134 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~~~~-~~---~~e~~~l~~~l~G~~~~----~~~~~~~~~~~~~~-~~~ 134 (485)
..++|+|.+|+||+.+.... .| .+|.+...+-+.|.... +.++..+..+++.. +|+
T Consensus 130 ~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 130 LPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp SCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 46899999999999764431 22 34444555545453221 35566777788888 998
No 44
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=94.77 E-value=0.093 Score=56.48 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC--CCC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MPL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~--~~~ 80 (485)
+.+++.+|+.+...||+|+.|..|...+. ++.-|. +.-.+..+++..- ..+.-+|||...|++...++.+.. +..
T Consensus 51 ~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~~m~~~~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~l 128 (572)
T 2j3l_A 51 EKLKTIMREEFEKIDAVEMLMPALLPAEL-WKESGRYETYGPNLYRLKDR-NDRDYILGPTHEETFTELIRDEINSYKRL 128 (572)
T ss_dssp HHHHHHHHHHHHTTTCEECBCCSEEETHH-HHHHSHHHHSCTTSCEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHHH-HHhcCCccccchheEEEecC-CCCeEEEccccHHHHHHHHHhhccChhhc
Confidence 56788899999999999999999998874 444332 1012234555432 334558999999999998888854 246
Q ss_pred CeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC-----ChhHhhhhHHHHHHhhCCCC
Q psy15928 81 PLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~~ 136 (485)
++|+|++|++|+.+.....| .+|.+...+-+.|... .+..+.....++++.||+++
T Consensus 129 P~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~ 192 (572)
T 2j3l_A 129 PLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEF 192 (572)
T ss_dssp CEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 89999999999976542111 2455566666666421 13333446677888899874
No 45
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=94.01 E-value=0.13 Score=53.61 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++.+++.+...||+|+.|..|...+.. ..-|.-.. ....+++. .+.-+|||+.-+++....+.+.. . ..
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sG~~~~f~~emy~~~----~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPEIL-IGTGQLPKFEEDLYKCE----RDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHSCTTTTGGGSCBCT----TTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHHHH-HhcCCCCcChhhheEec----CCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 356777888999999999999999998854 55453111 12344443 23458999999998888776643 3 45
Q ss_pred CeeEEEeCcEEecCCcc---cc-c---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATA---EV-G---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~~-~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
++|++++|+||+.+.+. +. | ..|.+.+-+...+... .+.++.....++++.||++
T Consensus 251 Plrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 251 PIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp CEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 89999999999976532 11 1 2344445444444322 1567777788888888887
No 46
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=93.81 E-value=0.075 Score=54.60 Aligned_cols=165 Identities=13% Similarity=0.069 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++.+|+.+...||+|+.|..|...+. ++.-|.- .-.+..+++. ...+.-+|||...+++...++.+.. . ..
T Consensus 34 ~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~em~~~d--~~~~~~~LrP~~~~~~~~~~~~~~~s~~~l 110 (401)
T 1evl_A 34 RELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQIFNQGLKSYRDL 110 (401)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSGGGCCEEE--ETTEEEEECSCSHHHHHHHHTSSCCBGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEECCeeccHHH-HHhcCcHhhhchhhEeEe--cCCceEEEcCCCCHHHHHHHHhhhhhhhhC
Confidence 46788899999999999999999999874 3443321 0011223321 1234558999999999999877744 2 45
Q ss_pred CeeEEEeCcEEecCCcc-ccc---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCC-CCccccccccccccchh
Q psy15928 81 PLKLFEISDIVYKDATA-EVG---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQI-PLDKTEGYCARNQRNLV 151 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~-~~~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (485)
++|+|++|++|+.+..+ ..| .+|.+...+-+.+... .|.++.....++++.+|+ ++.+ ..+.+.+
T Consensus 111 P~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~--~~~~~~~---- 184 (401)
T 1evl_A 111 PLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV--KLSTRPE---- 184 (401)
T ss_dssp SEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEE--EEECCCS----
T ss_pred ChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEE--EEecCCc----
Confidence 89999999999976541 112 2444455544444321 144566777788899998 4211 1111100
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHhCCC
Q psy15928 152 AVYYNKSPGFEIIHGLLDRVMQLLQIP 178 (485)
Q Consensus 152 ~~~~~~~~~f~~lKg~ve~ll~~lgi~ 178 (485)
........+......+..++..+|++
T Consensus 185 -~~~~~~~~~~~a~~~~~~~l~~~g~~ 210 (401)
T 1evl_A 185 -KRIGSDEMWDRAEADLAVALEENNIP 210 (401)
T ss_dssp -SCCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred -ccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 00000011334556677888888875
No 47
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=93.76 E-value=0.16 Score=53.32 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCC---chhhhhhhhhchHHHHHHHHHhcC-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK-M 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPl---s~e~s~LR~SLlpgLLe~~~~N~~-~ 78 (485)
+.+++.+|+.+...||+|+.|..|...+...+..|.-.. .+....+..-- ..+.-+|||...+++....+.+.. +
T Consensus 42 ~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~ 121 (459)
T 1nj8_A 42 RYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVH 121 (459)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhc
Confidence 467888999999999999999999987743222331100 12234443210 134568999999999999988854 3
Q ss_pred -CCCeeEEEeCcEEecCCccccc---cccce-EEEEEEecCCC-----ChhHhhhhHHHHHHhhCCC
Q psy15928 79 -PLPLKLFEISDIVYKDATAEVG---ARNQR-NLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~~~~~~---~~e~~-~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~ 135 (485)
..++|+|++|+||+.+.....+ .+|.+ ...+-..|... .+.++..+..++++.||++
T Consensus 122 r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~ 188 (459)
T 1nj8_A 122 TDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIP 188 (459)
T ss_dssp TSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4689999999999976431112 23434 44433333221 1334666777888888887
No 48
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=93.05 E-value=0.26 Score=52.01 Aligned_cols=130 Identities=10% Similarity=-0.009 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHH-hcc-cCCCCCcEEeeCCC---chhhhhhhhhchHHHHHHHHHhcC-
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQ-KMEDIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK- 77 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~-~~~-~~~~~~~v~I~NPl---s~e~s~LR~SLlpgLLe~~~~N~~- 77 (485)
+.+++.+|+.+...||+|+.|..|...+.. .. -+. +.-.+...++..-= ..+.-+|||...+++....+.+..
T Consensus 48 ~~I~~~~r~~~~~~G~~ei~tP~l~~~el~-~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s 126 (477)
T 1hc7_A 48 ENIQQVLDRMFKETGHQNAYFPLFIPMSFL-RKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRS 126 (477)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEESTTC----------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHcCCEEEecCccccHHHH-hhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhc
Confidence 467888999999999999999999988743 22 221 00012344443210 034558999999999999998855
Q ss_pred C-CCCeeEEEeCcEEecCCccccc---cccceEEEEEEecCCCC-----hhHhhhhHHHHH-HhhCCC
Q psy15928 78 M-PLPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSPG-----FEIIHGLLDRVM-QLLQIP 135 (485)
Q Consensus 78 ~-~~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~~-----~~~~~~~~~~~~-~~~~~~ 135 (485)
+ ..++|+|++|+||+.+.. ..+ .+|.+...+-..|...+ +..+..+..+++ +.||++
T Consensus 127 ~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~ 193 (477)
T 1hc7_A 127 WRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIP 193 (477)
T ss_dssp GGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 3 468999999999997632 112 23333444433343211 222333456677 678876
No 49
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=92.61 E-value=0.11 Score=56.75 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccC-CCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~-~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++.+|+.+...||+|+.|..|.+.+. ++.-|.-. -.+..+... ...+.-+|||..-|++....+.+.. . ..
T Consensus 275 ~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l-~~~sGh~~~~~~~my~~d--~~~~~~~LrP~~~~~~~~~~~~~~~syr~L 351 (642)
T 1qf6_A 275 RELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQIFNQGLKSYRDL 351 (642)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHHSHHHHHGGGCEEEE--ETTEEEEECSSSHHHHHHHHTTSCEEGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEECCcCccHHH-HhhcCccccccccceeee--cCCceEEecCCCCHHHHHHHHhhhhhcccc
Confidence 46788899999999999999999999874 34433210 011233311 1223448999999999999887743 2 46
Q ss_pred CeeEEEeCcEEecCCcccc-c---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCC-CCccccccccccccchh
Q psy15928 81 PLKLFEISDIVYKDATAEV-G---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQI-PLDKTEGYCARNQRNLV 151 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~-~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (485)
++|+|++|.+|+.+..+.. | .+|.+...+-+.+... .+..+.....++++.||+ ++.+ ..+.+.++
T Consensus 352 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~~~v--~l~~~~e~--- 426 (642)
T 1qf6_A 352 PLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV--KLSTRPEK--- 426 (642)
T ss_dssp SEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEE--EEECCCSS---
T ss_pred CeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCceEE--EEecCccc---
Confidence 8999999999997765221 2 2344444444444321 144456667788888998 4321 11111000
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHhCCCCCCCCceEEeeCCCCCccCCceEEEEE
Q psy15928 152 AVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVML 205 (485)
Q Consensus 152 ~~~~~~~~~f~~lKg~ve~ll~~lgi~~~~~~~~~~~~~~~~~~hpgrsa~I~~ 205 (485)
+......+....+.+..++...|++ +...+..-.+|-| ..++.+
T Consensus 427 --~~g~~e~w~~a~~~l~~~l~~~g~~------~~~~~g~~afygp--k~d~~~ 470 (642)
T 1qf6_A 427 --RIGSDEMWDRAEADLAVALEENNIP------FEYQLGEGAFYGP--KIEFTL 470 (642)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHTTTCC------CEEETTCSCTTCC--EEEEEE
T ss_pred --ccCCHHHHHHHHHHHHHHHHHcCCC------cEEcCCCcccccC--cccEEE
Confidence 0000012345567788888888885 4555544455545 355543
No 50
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=92.14 E-value=0.2 Score=48.79 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=75.6
Q ss_pred hHHHHHHH--HHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCC-C-
Q psy15928 4 NKLSDQLR--GDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-P- 79 (485)
Q Consensus 4 ~~~~~klr--~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~-~- 79 (485)
+.+++.+| +.+...||.|+.|..|-..+.. .. + .+... +.+.=.||+-+.|+.. +.+... .
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~-~~--------d--~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~ 68 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEP-AG--------N--FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPD 68 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSC-CS--------S--CEEET-TSCEEEECCCHHHHHH---HHHTTCTTC
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhh-cc--------c--ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCC
Confidence 34566666 9999999999999999875532 11 1 22222 4456689999999999 444433 4
Q ss_pred CCeeEEEeCcEEecCCccccccccceEEEEEEecCCCC--hhHhhhhHHHHHHhhCCC
Q psy15928 80 LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPG--FEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~--~~~~~~~~~~~~~~~~~~ 135 (485)
.++|+|++|.||+.+... .+|.+..++=+.|.... -.++-.+..++++.+|++
T Consensus 69 ~p~R~~y~g~vfR~e~~~---~Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~ 123 (275)
T 1usy_A 69 SQIKVWYADFVYRYSGSD---LVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG 123 (275)
T ss_dssp CCEEEECCEEEEEEETTE---EEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS
T ss_pred CceEEEEeceEEecCCCC---CCeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC
Confidence 689999999999965432 15555666666665322 234445555677777764
No 51
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=91.42 E-value=0.35 Score=50.15 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeCCCchhhhhhhhhchHHHHHHHHHhc-CC-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK-KM-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~-~~-~~ 80 (485)
+.+++.+++.+...||+|+.+..|+..+.. ..-|.-... ...+++.+ +.-+||++--+++......+. +. ..
T Consensus 170 ~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sG~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~L 244 (421)
T 1ses_A 170 LALLRFAMDFMARRGFLPMTLPSYAREKAF-LGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 244 (421)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHTCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCceecHHHH-HhcCCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchhC
Confidence 356777888889999999999999998864 555532111 23445532 344799999998887766653 23 35
Q ss_pred CeeEEEeCcEEecCCcc---c-cc---cccceEEEEEEecCC------CChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATA---E-VG---ARNQRNLVAVYYNKS------PGFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l~G~~------~~~~~~~~~~~~~~~~~~~~ 135 (485)
++|++++|.+|+.+.+. + .| ..|.+.+-+...... ..|.++.....++++.||++
T Consensus 245 Plr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~ 312 (421)
T 1ses_A 245 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 312 (421)
T ss_dssp SEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 89999999999977421 1 12 133334433333322 12567777888888899987
No 52
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=90.64 E-value=1.7 Score=46.15 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCC---chhhhhhhhhchHHHHHHHHHhcC-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK-M 78 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPl---s~e~s~LR~SLlpgLLe~~~~N~~-~ 78 (485)
+.+++.+++.+...||+|+.+..|...+...+.-+. +.-..+...+..-- ..+.-+|||+--+++....+.... .
T Consensus 59 ~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~Sy 138 (518)
T 3ial_A 59 NAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSY 138 (518)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBG
T ss_pred HHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhccc
Confidence 467888899999999999999999987642111110 00011233443210 123458999999999999877754 2
Q ss_pred -CCCeeEEEeCcEEecCC
Q psy15928 79 -PLPLKLFEISDIVYKDA 95 (485)
Q Consensus 79 -~~~~rlFEiG~Vf~~~~ 95 (485)
..++|++++|++|+.+.
T Consensus 139 rdLPlrl~q~~~~fR~E~ 156 (518)
T 3ial_A 139 KDLPLKIHQTCTIFRHET 156 (518)
T ss_dssp GGCCEEEEEEEEEECTTC
T ss_pred ccCCeEEEEEeceecCCC
Confidence 46899999999999763
No 53
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=90.39 E-value=0.4 Score=50.24 Aligned_cols=127 Identities=19% Similarity=0.101 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~~ 80 (485)
+.+++.+++.+...||+|+.+..|++.+.. ..-|.-.. .....++. .+.-+||++--+++......+.. . ..
T Consensus 197 ~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sG~~~~f~~emy~~~----d~~l~LrPt~e~~~~~~~~~~~~s~~~L 271 (455)
T 2dq0_A 197 LALIRFALDRLIEKGFTPVIPPYMVRRFVE-EGSTSFEDFEDVIYKVE----DEDLYLIPTAEHPLAGMHANEILDGKDL 271 (455)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHHHH-HTTSCTTHHHHTCCBBT----TSSCEECSSTHHHHHHTTTTEEEETTTC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCcccCHHHH-HhcCCCCCChHhhCeec----CCcEEEcCcCcHHHHHHHHhCccCchhC
Confidence 356777888888899999999999998853 44442110 11234443 23458999999999888877743 3 46
Q ss_pred CeeEEEeCcEEecCCcc---c-cc---cccceEEEEEEecCCC----ChhHhhhhHHHHHHhhCCC
Q psy15928 81 PLKLFEISDIVYKDATA---E-VG---ARNQRNLVAVYYNKSP----GFEIIHGLLDRVMQLLQIP 135 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l~G~~~----~~~~~~~~~~~~~~~~~~~ 135 (485)
++|++++|.||+.+... + .| ..+.+.+-++...... .+.++.....++++.||++
T Consensus 272 Plr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~ 337 (455)
T 2dq0_A 272 PLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP 337 (455)
T ss_dssp SEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 89999999999976531 1 11 1233333333322211 1567777888888889987
No 54
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=90.13 E-value=0.66 Score=49.18 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHH-hcc-cCCCCCcEEeeCCC---chhhhhhhhhchHHHHHHHHHhcC-
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQ-KMEDIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK- 77 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~-~~~-~~~~~~~v~I~NPl---s~e~s~LR~SLlpgLLe~~~~N~~- 77 (485)
+.+++.+++.+.. ||+|+.+..|...+.+ .. -|. +.-.+...++..-= ..+.-+|||+.-+++....+.+..
T Consensus 75 ~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~-~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s 152 (501)
T 1nj1_A 75 KNTLKILRRILDR-DHEEVLFPLLVPEDEL-AKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRS 152 (501)
T ss_dssp HHHHHHHHHHHTT-TCEECCCCSEEEHHHH-TTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHc-CCEEEecCcEecHHHH-hcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcc
Confidence 4577888999988 9999999999987743 22 221 00012233442100 023458999999999999998854
Q ss_pred C-CCCeeEEEeCcEEecCCccccc---cccce-EEEEEEecCCC-----ChhHhhhhHHHHHHhhCCCC
Q psy15928 78 M-PLPLKLFEISDIVYKDATAEVG---ARNQR-NLVAVYYNKSP-----GFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 78 ~-~~~~rlFEiG~Vf~~~~~~~~~---~~e~~-~l~~~l~G~~~-----~~~~~~~~~~~~~~~~~~~~ 136 (485)
. ..++|+|.+|.+|+.+..+..+ .+|.. ...+-..+... .+..+.....++++.||+++
T Consensus 153 ~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~ 221 (501)
T 1nj1_A 153 HTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPY 221 (501)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 3 4689999999999976532222 23334 34432333221 14445666778888888873
No 55
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=89.97 E-value=1.3 Score=46.03 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.|+-|..+++... + ...+...+. - ....-+||+|---- ++.+... ..|+
T Consensus 139 ~i~~~ir~ff~~~gF~eV~TP~l~~~~~--e------~~~~~f~~~-~-~~~~~~L~~Spql~-~~~~~~g-----~~rv 202 (429)
T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIASAT--E------GGAQLFPVI-Y-FGKEAFLAQSPQLY-KELMAGV-----VERV 202 (429)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS--S------TTCCCCEEE-E-TTEEEEECSCCHHH-HHHHHHH-----HSEE
T ss_pred HHHHHHHHHHhhCCCEEEECCEEEeeCC--C------CCceeEEEe-c-CCceEEecCCcHHH-HHHHHhC-----cCce
Confidence 5678899999999999999999986531 1 011122221 1 11123555443322 1222222 3599
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHHHHHHhh
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL 132 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~ 132 (485)
|+||+||+.++... .+..|.+.+-+-+++. ++.++....+.++..+
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFA--DYNDVMQLLEKILHNI 249 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred EEEcccccccCCccccccceeeEeeeeecCC--CHHHHHHHHHHHHHHH
Confidence 99999999876432 2334677888877775 3677777766655443
No 56
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=89.48 E-value=1.1 Score=46.64 Aligned_cols=111 Identities=9% Similarity=-0.007 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
..+.+.+|++|.+.||.|+-|..+.+... +. ..+...+ + -....-+||+|---- ++.+.. + ..|
T Consensus 139 s~i~~~ir~~f~~~gF~eVeTP~l~~~~~--e~------~~~~f~~-~-~~~~~~~Lr~Spel~-~~~~~~----g-~~r 202 (434)
T 1x54_A 139 ETLIMAAREWLLKDGWHEVFPPILVTGAV--EG------GATLFKL-K-YFDKYAYLSQSAQLY-LEAAIF----G-LEK 202 (434)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCS--SC------GGGCCEE-E-ETTEEEEECSCSHHH-HHHHHH----H-HSE
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEeecC--CC------CceeEEE-e-ecCCcEEeccChHHH-HHHHhc----C-ccc
Confidence 35778899999999999999999986431 00 0111122 1 111223566433221 121211 1 369
Q ss_pred EEEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHHHHHHhh
Q psy15928 84 LFEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL 132 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~ 132 (485)
+|+||+||+.++... .+..|.+.+-+-+++. ++.++....+.++..+
T Consensus 203 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWM--DLWDIMKVEEELVSYM 250 (434)
T ss_dssp EEEEEEEECCCCCCCSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred eEEEecceecCCCCCcccccEEEEeeEEEcCC--CHHHHHHHHHHHHHHH
Confidence 999999999875432 2334677888888875 3777777777665544
No 57
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=88.94 E-value=1.4 Score=47.18 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHh-cCC-CC
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN-KKM-PL 80 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N-~~~-~~ 80 (485)
+.+.+-+++.+...||+|+.+..+++.+.. ..-|. +....+..++.+ +.-+||++-=+++....+.- ++. ..
T Consensus 279 ~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~-~~sG~~~~f~e~mf~~~~----~~~~L~PT~E~~~~~l~~~~i~s~~~L 353 (536)
T 3err_A 279 LALLRFAMDFMARRGFLPMTLPSYAREKAF-LGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 353 (536)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHTCTTTTGGGCCEETT----TTEEECSSTHHHHHHHTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeccccccHHHH-HhcCCcccChhhceEecC----CCEEEccCCcHHHHHHHhcccccHhhC
Confidence 345666788888899999999999998864 56664 221234556654 34578888877765543333 223 45
Q ss_pred CeeEEEeCcEEecCCcc---c-cc---cccceEEEEEEecCCC------ChhHhhhhHHHHHHhhCCCC
Q psy15928 81 PLKLFEISDIVYKDATA---E-VG---ARNQRNLVAVYYNKSP------GFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l~G~~~------~~~~~~~~~~~~~~~~~~~~ 136 (485)
++|++++|.+|+.+.+. + .| ..+....-+...-... .|..+....+++++.||+++
T Consensus 354 Plr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpy 422 (536)
T 3err_A 354 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY 422 (536)
T ss_dssp SEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 89999999999976531 1 12 1233333333222111 26667777788889999884
No 58
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=88.44 E-value=1.3 Score=45.82 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.|+-|..+++... +. ..+...+ + -....-+||+|---- ++.+. + + .-|+
T Consensus 130 ~i~~~ir~~f~~~gF~EV~TPil~~~~~--e~------~~~~f~~-~-~~g~~~~L~~Spel~-~~~l~-~---g-~~rv 193 (422)
T 1n9w_A 130 ALVRGFRRYLDRQDFTEIFTPKVVRAGA--EG------GSGLFGV-D-YFEKRAYLAQSPQLY-KQIMV-G---V-FERV 193 (422)
T ss_dssp HHHHHHHHHHHHTTCEECCCC--------------------------------------CHHH-HHHHH-H---H-HSEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEeCC--CC------CceeEEE-e-eCCCcEEeeeCHHHH-HHHHh-h---C-CCce
Confidence 5778899999999999999999885431 10 0111222 1 111234667554333 24443 2 1 2599
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
|+||+||+.++... .+..|.+.+-+-++|.. ++.++-...+.++.
T Consensus 194 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-d~~dlm~l~e~ll~ 239 (422)
T 1n9w_A 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA-DEEDLMRLEEALLA 239 (422)
T ss_dssp EEEEEC-------------CCEEEEEEEESCS-SHHHHHHHHHHHHH
T ss_pred eEEeCceECCCCCCCcccceeEEeeeeeeCCC-CHHHHHHHHHHHHH
Confidence 99999999875432 23346778888777741 35555555555443
No 59
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=87.96 E-value=2 Score=45.73 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCC-------CchhhhhhhhhchHHHHHHHHHh-
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNP-------KTLEFQIARTTLVPGLLKTLAAN- 75 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NP-------ls~e~s~LR~SLlpgLLe~~~~N- 75 (485)
.+.+-+++.+...||+||.+..|+..+.. ..-|. +.-..+..++... -..+.-+||++-=+++....+..
T Consensus 206 aL~~f~~d~~~~~Gy~EV~~P~lv~~el~-~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei 284 (522)
T 3vbb_A 206 ALIQYALRTLGSRGYIPIYTPFFMRKEVM-QEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEW 284 (522)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCE
T ss_pred HHHHHHHHHHHHcCCEEEECCcccchHHH-hhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhe
Confidence 45666788888899999999999998854 55543 2112334555432 11234478888877765443333
Q ss_pred cCC-CCCeeEEEeCcEEecCCcc---cc-c---cccceEEEEEE-ecCCC-----ChhHhhhhHHHHHHhhCCCC
Q psy15928 76 KKM-PLPLKLFEISDIVYKDATA---EV-G---ARNQRNLVAVY-YNKSP-----GFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 76 ~~~-~~~~rlFEiG~Vf~~~~~~---~~-~---~~e~~~l~~~l-~G~~~-----~~~~~~~~~~~~~~~~~~~~ 136 (485)
++. ..++|++++|.||+.+.+. ++ | ..+...+-++. +-... .|..+....+++++.||++|
T Consensus 285 ~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpy 359 (522)
T 3vbb_A 285 LRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPY 359 (522)
T ss_dssp ECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 333 3589999999999987531 11 2 12222332322 22211 16677777888899999884
No 60
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=87.58 E-value=2.1 Score=45.36 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCC-CcEEeeCCCchhhhhhhhhchHHHHHHHHHhcC-C-C
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDI-PAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-P 79 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~-~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~-~-~ 79 (485)
+.+.+-+++.+...||+||.+..|+..+.. +.-|. +.... +..++..- ..+.-+||++-=+.+....+.... . .
T Consensus 223 ~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l~~~~i~s~~~ 300 (501)
T 1wle_A 223 HGLVNFTLNKLIHRGFTPMTVPDLLRGVVF-EGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGYFMDHSVAFRD 300 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHHHTTEEEEGGG
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccccHHHH-HhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHHHhhccCCccc
Confidence 356677888888999999999999998853 55552 22122 34454211 112347898888877666554432 3 4
Q ss_pred CCeeEEEeCcEEecCCcc---ccc---cccceEEEEEEecCC------CChhHhhhhHHHHHHhhCCCC
Q psy15928 80 LPLKLFEISDIVYKDATA---EVG---ARNQRNLVAVYYNKS------PGFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 80 ~~~rlFEiG~Vf~~~~~~---~~~---~~e~~~l~~~l~G~~------~~~~~~~~~~~~~~~~~~~~~ 136 (485)
.+++++++|.+|+.+.+. ..| ..+...+-+...-.. ..|..+....+++++.||+++
T Consensus 301 LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpy 369 (501)
T 1wle_A 301 LPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHF 369 (501)
T ss_dssp CSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 689999999999977541 112 122223322222221 127778888889999999984
No 61
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=87.36 E-value=2.2 Score=45.03 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEee-CCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIG-NPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~-NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|..+++... | ....+.... |-... .-+||+|-- |.. +.=...+ --|
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----G---a~a~~F~~~~~~~~~-~~yLr~Spq--Lyl--k~l~v~G-~~r 244 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAG-----G---AAARPFITHHNALDM-TLYMRIAIE--LHL--KRLIVGG-LEK 244 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----S---SSSCCCEEEETTTTE-EEEECSCSH--HHH--HHHHHTT-CCE
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCC-----C---CcccceEecccCCCc-eeEEecCHH--HHH--HHHhhcc-cCc
Confidence 4677899999999999999999986421 1 011222222 43333 346776543 222 1111112 369
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVM 129 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~ 129 (485)
+||||++|+.++.+..+..|.+.+-+=+++. ++.++-.+.+.++
T Consensus 245 Vyeig~~FR~E~~~~rH~pEFT~lE~e~af~--d~~dlm~l~E~ll 288 (493)
T 3a74_A 245 VYEIGRVFRNEGISTRHNPEFTMLELYEAYA--DFRDIMKLTENLI 288 (493)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEETC--CHHHHHHHHHHHH
T ss_pred eEEECccccCCCCCcccCCceeEEEEEecCC--CHHHHHHHHHHHH
Confidence 9999999998765544455667777666653 3566666555443
No 62
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=86.95 E-value=1.2 Score=46.82 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhccc-CCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHh--cCC-CC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN--KKM-PL 80 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~-~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N--~~~-~~ 80 (485)
.+.+-+++.+...||+||++..++..+.. ..-|.. .-..+..++.+. .+.-+|+++-=+.+... .++ ++. ..
T Consensus 213 aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l-~~~~i~sy~dL 288 (484)
T 3lss_A 213 ALVSYSLDFLVKRGYTPFYPPFFLNRDVM-GEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAY-HRGRWFTELKE 288 (484)
T ss_dssp HHHHHHHHHHHTTTCEEEECCSEEEHHHH-HHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHH-TTTCEESCCSS
T ss_pred HHHHHHHHHHHHcCCEEEecCccccHHHH-HhcCCcccccccceEeecC--CcceEEeccCcHHHHHH-HhccccchhhC
Confidence 45666778888899999999999998753 444421 101234566542 33457888776666433 333 333 35
Q ss_pred CeeEEEeCcEEecCCcc---c-cc---cccceEEEEEE-ecCCC-----ChhHhhhhHHHHHHhhCCCC
Q psy15928 81 PLKLFEISDIVYKDATA---E-VG---ARNQRNLVAVY-YNKSP-----GFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l-~G~~~-----~~~~~~~~~~~~~~~~~~~~ 136 (485)
++|++++|.+|+.+.+. + .| ..+...+-++. +-... .|..+....+++++.||++|
T Consensus 289 Plr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpy 357 (484)
T 3lss_A 289 PLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPY 357 (484)
T ss_dssp CEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 89999999999977521 1 12 12333332222 22211 26677777888899999884
No 63
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=86.70 E-value=2.5 Score=44.72 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|.-+++... | ....+..+ .|-...+ -+||+|----| +.+.- .+ --|
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~-----G---a~ar~F~t~~~~~~~~-~yL~~SpqLyl-k~L~v---~G-~~r 253 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPG-----G---ASARPFITHHNALDLD-MYLRIAPELYL-KRLVV---GG-FER 253 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCC-----S---SCCCCCEEEETTTTEE-EEECSCSHHHH-HHHHH---HT-CCE
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCC-----C---CcccceEeccCCCCce-EEeccCHHHHH-HHHhh---cC-CCc
Confidence 4667899999999999999999986421 1 01112222 2443333 35776543211 22110 11 258
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
+||||++|+.++.+..+..|.+.+-+=+++. +++++-.+.+.++.
T Consensus 254 VyeIg~~FR~E~~~~rH~pEFt~lE~e~af~--d~~dlm~l~E~li~ 298 (504)
T 1e1o_A 254 VFEINRNFRNEGISVRHNPEFTMMELYMAYA--DYHDLIELTESLFR 298 (504)
T ss_dssp EEEEEEEECCCCCCC-CCSEEEEEEEEEESC--CHHHHHHHHHHHHH
T ss_pred EEEEcccccCCCCCccccCceeeeeeeecCC--CHHHHHHHHHHHHH
Confidence 9999999998765544455667776666653 35666666554433
No 64
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=85.28 E-value=0.98 Score=45.59 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=61.8
Q ss_pred eEEeehHHHHhhcCCccCCCCCCCCccCCCCCCCCcCCCCCHHHHHHHHHhcCCEEEEecCCCeEEEEcC-----CCCCC
Q psy15928 361 KEVVNVKKATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIP-----PTRHD 435 (485)
Q Consensus 361 ~i~~~~~~i~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~v~~P-----~~R~D 435 (485)
+|.++.+.+.+++|. +++.+++.+.+..+|..+... .+..+.+.++ +.|.|
T Consensus 3 ~i~v~~~~L~~~lg~-----------------------~~~~~el~~~~~~~G~~~~~~-~d~iiei~it~~~~~pNR~D 58 (348)
T 2cxi_A 3 KFDVSKSDLERLIGR-----------------------SFSIEEWEDLVLYAKCELDDV-WEENGKVYFKLDSKDTNRPD 58 (348)
T ss_dssp EEEEEHHHHHHHHTS-----------------------CCCHHHHHHHHHHTTEEEEEE-EEETTEEEEEEEECCTTCGG
T ss_pred EEEECHHHHHHHHCC-----------------------CCCHHHHHhhhhhccCCHHHc-CceEEEEEccCCCCCCChHH
Confidence 588999999999999 999999999999899998643 2345789999 99999
Q ss_pred CCccchhhhhhHhhhccCC
Q psy15928 436 IIHTCDIYEDIAIAYGYNN 454 (485)
Q Consensus 436 i~~~~DiiEei~r~yGy~~ 454 (485)
+..-.=|+-|++-++|-.-
T Consensus 59 ~lS~~GiARelaa~~~~~~ 77 (348)
T 2cxi_A 59 LWSAEGVARQIKWALGIEK 77 (348)
T ss_dssp GSSHHHHHHHHHHHTTSSC
T ss_pred HhHHHHHHHHHHHHhCCCC
Confidence 9999999999999988754
No 65
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=85.15 E-value=4.8 Score=42.78 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHH-HHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKT-LAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~-~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|.-+++... | ...+.-+.-.|-...+ .+||+| |.|..- +.- .+ --|
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~g-----G--a~a~~F~t~~~~~~~~-~yL~~S--pqL~lk~liv---~g-~~r 246 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIPG-----G--AVAKPFITYHNELDMN-LYMRIA--PELYHKMLVV---GG-IDR 246 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----S--SSCCCCEEEETTTTEE-EEECSC--SHHHHHHHHH---TT-CCE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccCC-----C--ccccceeeecccCCcc-eEeeCC--HHHHHHHHHh---cC-cCc
Confidence 4567899999999999999999986421 1 0011112223544433 378866 333321 111 12 248
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
+||||++|+.++.+..+..|.++|-+=++.. +++++-.+.+.++.
T Consensus 247 Vyeig~~FR~E~~~trH~pEFtmlE~e~af~--d~~dlm~l~E~li~ 291 (521)
T 3bju_A 247 VYEIGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYHDLMEITEKMVS 291 (521)
T ss_dssp EEEEEEEECCSCCBTTBCSEEEEEEEEEETC--CHHHHHHHHHHHHH
T ss_pred eEEEEcceeCCCCCCccchhhhhhhhhhhcC--CHHHHHHHHHHHHH
Confidence 9999999998765544455666776655543 36666666655443
No 66
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=84.49 E-value=0.7 Score=49.24 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHCCCeEeeccceechhhhHHH-hcccCC-CCCcEEeeCCCc---hhhhhhhhhchHHHHHHHHHhcC-
Q psy15928 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQKME-DIPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANKK- 77 (485)
Q Consensus 4 ~~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~-~~~~v~I~NPls---~e~s~LR~SLlpgLLe~~~~N~~- 77 (485)
+.+++.+++.+...||+|+.+..|.+.+.. .. -+.-.. ..+...+...-. .+.-+|||+--|++....+....
T Consensus 65 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~S 143 (519)
T 4hvc_A 65 EAIKDFFDAEIKKLGVENCYFPMFVSQSAL-EKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 143 (519)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEEHHHH-TTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCEEEeccccccHHHH-hcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccc
Confidence 467788899999999999999999987743 32 121000 112233321100 23458999999999998877754
Q ss_pred C-CCCeeEEEeCcEEecC
Q psy15928 78 M-PLPLKLFEISDIVYKD 94 (485)
Q Consensus 78 ~-~~~~rlFEiG~Vf~~~ 94 (485)
. ..++|++++|.||+.+
T Consensus 144 yrdLPlrl~q~g~~fR~E 161 (519)
T 4hvc_A 144 HRDLPIKLNQWCNVVRWE 161 (519)
T ss_dssp GGGCCEEEEEEEEEECCC
T ss_pred cccCCeEEEEEcCeeeCC
Confidence 3 4689999999999976
No 67
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=84.33 E-value=2.5 Score=42.55 Aligned_cols=108 Identities=10% Similarity=-0.043 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCC-CCcEEeeC--C---------------------Cchhhhhh
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMED-IPAVHIGN--P---------------------KTLEFQIA 60 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~~~v~I~N--P---------------------ls~e~s~L 60 (485)
.+++.+++ ....||.|+.+..+++.+.. +..|.-... .....+.. + +.++--+|
T Consensus 69 aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~-e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~L 146 (346)
T 3mf2_A 69 RLAALITS-HREAGTEALRFPPVMSRAQL-EKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVL 146 (346)
T ss_dssp HHHHHHHH-TCCTTCEEEECCSEEEHHHH-HHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEE
T ss_pred HHHHHHHh-hHhcCCeEEECCCccCHHHH-HhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEEE
Confidence 45666677 67789999999999999864 666631111 22233211 0 11123467
Q ss_pred hhhchHHHHHHHHHh-cCCCCCeeEEEeCcEEecCCcccc-ccccceEEEEEEecC
Q psy15928 61 RTTLVPGLLKTLAAN-KKMPLPLKLFEISDIVYKDATAEV-GARNQRNLVAVYYNK 114 (485)
Q Consensus 61 R~SLlpgLLe~~~~N-~~~~~~~rlFEiG~Vf~~~~~~~~-~~~e~~~l~~~l~G~ 114 (485)
.|+.=|.+....+.- .-...++|+.++|.||+.+..... ...+.+.+-++..+.
T Consensus 147 iPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~t 202 (346)
T 3mf2_A 147 SPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGT 202 (346)
T ss_dssp CSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEES
T ss_pred cccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeC
Confidence 888888888877642 222347999999999998763111 123344565665553
No 68
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=84.25 E-value=5.5 Score=42.40 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHH-H-HHHHhcCCCCCe
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLL-K-TLAANKKMPLPL 82 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLL-e-~~~~N~~~~~~~ 82 (485)
++.+.+|++|...||.||-|.-+++... | ...+.-+.-.|-+..++ +||+|- .|. + .+.- + --
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~g-----G--A~a~pF~t~~n~~~~~~-yL~~Sp--qLylk~L~v~----G-~~ 273 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIPG-----G--AAAKPFVTHHNALDMEM-FLRIAP--ELYLKRLIVG----G-FE 273 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----S--SSSCCCEEEETTTTEEE-EECSCS--HHHHHHHHHT----T-CS
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccCC-----C--CcccccccccccCCcce-ecccCH--HHHHHHHHhc----C-CC
Confidence 4667899999999999999999985421 1 00111122235444332 567663 333 1 1211 1 25
Q ss_pred eEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHH
Q psy15928 83 KLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVM 129 (485)
Q Consensus 83 rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~ 129 (485)
|+||||++|+.++.+..+..|.+.|-.=++.. +++++-.+.+.++
T Consensus 274 rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~--d~~dlm~l~E~li 318 (529)
T 4ex5_A 274 RVFEINRNFRNEGVSPRHNPEFTMMEFYAAYT--DYRWLMDFTERLI 318 (529)
T ss_dssp EEEEEEEEECCSCCBTTBCSEEEEEEEEEETC--CHHHHHHHHHHHH
T ss_pred cEEEeehheecCCCCCCcccHhHhhhhhhhcC--CHHHHHHHHHHHH
Confidence 89999999998765444445666766655542 3566666665543
No 69
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=81.02 E-value=6.7 Score=39.36 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEee--CCCc--hhhhhhhhhchHHHHHHHHHhcCCCC
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIG--NPKT--LEFQIARTTLVPGLLKTLAANKKMPL 80 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~--NPls--~e~s~LR~SLlpgLLe~~~~N~~~~~ 80 (485)
++.+.+|++|...||.||-|..++...-- +. ...+.++. .|-. ....+||+|-=--+=..++...
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~~-~a------~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~---- 109 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQATVT-DI------HLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGC---- 109 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCC-CT------TCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecCCC-CC------ccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCC----
Confidence 46778999999999999999999953310 01 01122221 1211 1234577662111111122221
Q ss_pred CeeEEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhh
Q psy15928 81 PLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL 132 (485)
Q Consensus 81 ~~rlFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~ 132 (485)
-|+||||+||+.++.+..+..|.+.|-.=+++. ++.++-...+.++..+
T Consensus 110 -~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~--d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 110 -GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHY--DMYRLMNEVDDLLQQV 158 (345)
T ss_dssp -CSEEEEEEEECCCCCBTTBCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred -CcEEEEEcceeCCCCcccccchhheeeeeeeCC--CHHHHHHHHHHHHHHH
Confidence 389999999998765444455667776656653 3677777777766544
No 70
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=79.75 E-value=3.1 Score=43.84 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcc-cCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHh--cC--C-
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN--KK--M- 78 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N--~~--~- 78 (485)
.+.+-+++.+...||+||.+..|+..+.. ..-|. +.-..+..++.+. ++.-+|+++.=-.+- .+.+| ++ .
T Consensus 190 aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~-~l~~~ei~~S~y~ 265 (485)
T 3qne_A 190 ALINYGLSFLSSKGYVPLQAPVMMNKEVM-AKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPIS-AYHAGEWFESPAE 265 (485)
T ss_dssp HHHHHHHHHHHTTTCEEEECCSEEEHHHH-HHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHH-HHTTTCEESSHHH
T ss_pred HHHHHHHHHHHHcCCEEEeCCccccHHHH-hhcCCccccccceEEEeCC--CCeEEEeccccHHHH-HHHhccccccchh
Confidence 35666778888899999999999998853 44442 1111234555432 233455544432333 33334 22 2
Q ss_pred CCCeeEEEeCcEEecCCcc---c-cc---cccceEEEEEE-ecCC---CChhHhhhhHHHHHHhhCCCC
Q psy15928 79 PLPLKLFEISDIVYKDATA---E-VG---ARNQRNLVAVY-YNKS---PGFEIIHGLLDRVMQLLQIPL 136 (485)
Q Consensus 79 ~~~~rlFEiG~Vf~~~~~~---~-~~---~~e~~~l~~~l-~G~~---~~~~~~~~~~~~~~~~~~~~~ 136 (485)
..++++++++.||+.+.+. + .| ..+...+-+.. +-.. ..|..+....+++++.||++|
T Consensus 266 dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpy 334 (485)
T 3qne_A 266 QLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPY 334 (485)
T ss_dssp HCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 3589999999999976532 1 12 12322332222 2111 126777778888999999984
No 71
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=79.22 E-value=10 Score=40.83 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEe-eCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I-~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|.-++...- + | ..+ ..+ .|-...++-.||+| |.|..-..- . .+ -=|
T Consensus 149 ~i~~~iR~fl~~~gF~EVeTPiL~~s~~--e--G----Ar~-F~v~~~~~~~~~y~L~qS--PQl~kq~Lm-v-~G-~~r 214 (580)
T 1l0w_A 149 RVIKAIWDFLDREGFVQVETPFLTKSTP--E--G----ARD-FLVPYRHEPGLFYALPQS--PQLFKQMLM-V-AG-LDR 214 (580)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS--S--S----SCC-CEEECTTSTTEEEECCSC--SHHHHHHHH-H-TT-CSE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCC--C--C----CCC-ccccccccCCceeECccC--HHHHHHHHH-H-hc-cCC
Confidence 4567899999999999999999985321 1 1 011 111 11111122236654 344333211 1 12 248
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhh
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL 132 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~ 132 (485)
+||||+||+.++.+..+-.|.+.|=+=++.. +++++..+.+.++..+
T Consensus 215 vfqI~~~FR~E~~~~~r~pEFT~lE~e~af~--d~~dvm~~~E~li~~i 261 (580)
T 1l0w_A 215 YFQIARCFRDEDLRADRQPDFTQLDLEMSFV--EVEDVLELNERLMAHV 261 (580)
T ss_dssp EEEEEEEECCCCCCSSCCSEEEEEEEEEESC--CHHHHHHHHHHHHHHH
T ss_pred eEEEeceeeCCCCCCCcCCCccceeeeecCC--CHHHHHHHHHHHHHHH
Confidence 9999999998765433323666776655553 3667666666655443
No 72
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=78.05 E-value=12 Score=40.35 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.||-|.-++...- + | ..+-+.=.|-...++-.||+| |.|..-..- . .+ -=|+
T Consensus 143 ~i~~~iR~fl~~~gFlEVeTPiL~~s~~--e--G----Ar~F~v~~~~~~~~~y~L~qS--PQl~kq~Lm-v-~G-~~rv 209 (585)
T 1c0a_A 143 KITSLVRRFMDDHGFLDIETPMLTKATP--E--G----ARDYLVPSRVHKGKFYALPQS--PQLFKQLLM-M-SG-FDRY 209 (585)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS--S--S----SCCCEEECSSSTTCEEECCSC--SHHHHHHHH-H-TT-CCEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCC--C--C----CccceecccccCCceEeCccC--HHHHHHHHH-h-cC-CCce
Confidence 4567899999999999999999995321 1 1 011111111111122236654 333322110 0 11 2489
Q ss_pred EEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHh
Q psy15928 85 FEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQL 131 (485)
Q Consensus 85 FEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~ 131 (485)
||||+||+.++.+...-.|.+.|=+=++.. +++++-.+.+.++..
T Consensus 210 fqI~~~FR~E~~~t~r~pEFT~lE~e~af~--d~~dvm~~~E~li~~ 254 (585)
T 1c0a_A 210 YQIVKCFRDEDLRADRQPEFTQIDVETSFM--TAPQVREVMEALVRH 254 (585)
T ss_dssp EEEEEEECCCCCBTTBCSEEEEEEEEEESC--CHHHHHHHHHHHHHH
T ss_pred EEEeceeecCCCCCCcCcccceeeeeecCC--CHHHHHHHHHHHHHH
Confidence 999999998765433323666776655543 366666666655543
No 73
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=77.23 E-value=7.2 Score=40.38 Aligned_cols=107 Identities=12% Similarity=0.068 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHH-HHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGL-LKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgL-Le~~~~N~~~~~~~r 83 (485)
++.+.+|++|...||.||-|..++...-. | ......+ |-. ....+||.| |.| ++.+.- + --|
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~e----G----~~~~F~~-~~~-g~~~~L~~S--pqLylq~l~~----g-~~r 199 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVE----G----GSTLFNL-DYF-GEQSFLTQS--SQLYLETCIP----T-LGD 199 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSS----C----TTSCCEE-EET-TEEEEECSC--SHHHHHHHHH----H-HCS
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCC----C----chhceee-ccC-CcccccCCC--hHHHHHHhhh----c-cCc
Confidence 46678999999999999999999754210 1 0111222 111 111244443 111 121111 1 138
Q ss_pred EEEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 84 LFEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
+||||++|+.++... .+..|.+.|-.=+++. +++++....+.++.
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~--d~~d~m~~~E~li~ 245 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFI--TLDDLMEKIEELVC 245 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESC--CHHHHHHHHHHHHH
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecC--CHHHHHHHHHHHHH
Confidence 999999999776432 3445667776666653 36666666665544
No 74
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=76.89 E-value=8.7 Score=40.41 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|++|...||.||-|..++...- + .......+.- ....-+||+|-=--+ +.+ ...+ .-|+
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~~--~------~ga~~f~~~~--~~~~~~L~~Spql~~-k~l---~~~g-~~rv 247 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPS--E------GGSSVFEVTY--FKGKAYLAQSPQFNK-QQL---IVAD-FERV 247 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS--S------SSSCCCEEEE--TTEEEEECSCTHHHH-HHH---HHTT-CCEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEecC--C------CCcccceecc--CCccEEcccChHHHH-HHH---HhcC-CCce
Confidence 4567789999999999999999987531 0 0112223321 122346664422111 211 1112 3599
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEE-ecCCCChhHhhhhHHHH
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVY-YNKSPGFEIIHGLLDRV 128 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l-~G~~~~~~~~~~~~~~~ 128 (485)
||||++|+.++... .+..|.+.+-+=+ .|.. ++++-.+.+.+
T Consensus 248 y~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~--~~dlm~l~E~l 291 (487)
T 1eov_A 248 YEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH--YHEVLDTLSEL 291 (487)
T ss_dssp EEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC--THHHHHHHHHH
T ss_pred EEEeccEecCCCCCCccchhhhhhhhhhhhhcC--HHHHHHHHHHH
Confidence 99999999765421 2223566665533 3432 34555555443
No 75
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=74.88 E-value=6.9 Score=41.33 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=47.3
Q ss_pred hhhhhhhchHHHHHHH----HHhcCCCCCeeEEEeCcEEecCCccccc---cccceEEEEEEecCCC----ChhHhhhhH
Q psy15928 57 FQIARTTLVPGLLKTL----AANKKMPLPLKLFEISDIVYKDATAEVG---ARNQRNLVAVYYNKSP----GFEIIHGLL 125 (485)
Q Consensus 57 ~s~LR~SLlpgLLe~~----~~N~~~~~~~rlFEiG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~----~~~~~~~~~ 125 (485)
.-+|||...++++-.. ..+ ++..++++++||++|+.+.....+ .+|.+..-+-+.+... .+..+....
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy-~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~ 260 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDAT-SRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEER 260 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHH-TCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred ceeecccchhHHHHHHHHHHHhc-CCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHH
Confidence 3479999999884333 333 135689999999999976322112 2343344333333221 155666777
Q ss_pred HHHHHhhCCC
Q psy15928 126 DRVMQLLQIP 135 (485)
Q Consensus 126 ~~~~~~~~~~ 135 (485)
.++++.||++
T Consensus 261 ~~i~~~LGl~ 270 (505)
T 1ati_A 261 LKWWQEMGLS 270 (505)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 7777888876
No 76
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=73.54 E-value=9.8 Score=40.63 Aligned_cols=108 Identities=8% Similarity=0.000 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
.+.+.+|++|...||.||-|..+++..- +. + ...+.+ |-... ..+||+|-=--+-..++ .+ --|+
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~--eg-g-----a~~F~v-~~~~~-~~yL~~Spql~~k~ll~----~g-~~rV 313 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSS--EG-G-----SNIFEV-KYFDR-KAYLAQSPQLYKQMAIM----GD-FRKV 313 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC-----------------------------CCBCSCTHHHHHHHHT----TT-CCEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecccC--CC-C-----cceeEE-ecCCC-ceEeccCHHHHHHHHHh----cC-cCcE
Confidence 4567789999999999999999987541 10 0 011111 22222 23777764333333332 12 2589
Q ss_pred EEeCcEEecCCcc-ccccccceEEEEEEe-cCCCChhHhhhhHHHHH
Q psy15928 85 FEISDIVYKDATA-EVGARNQRNLVAVYY-NKSPGFEIIHGLLDRVM 129 (485)
Q Consensus 85 FEiG~Vf~~~~~~-~~~~~e~~~l~~~l~-G~~~~~~~~~~~~~~~~ 129 (485)
||||++|+.++.. ..+..|.++|-.=++ +. +++++....+.++
T Consensus 314 feI~~~FR~E~~~t~RHl~EFtmlE~e~af~~--d~~d~m~~~E~li 358 (548)
T 3i7f_A 314 FEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE--NYHECIDVMEKLF 358 (548)
T ss_dssp EEEEEECCCSCCCSSSCCSCEEEEEEEEECSS--CTHHHHHHHHHHH
T ss_pred EEEeeeEecCCCCCCCcchhhhchhhhhhhhc--CHHHHHHHHHHHH
Confidence 9999999976642 223446666655432 22 2445555554443
No 77
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=72.86 E-value=9.8 Score=39.46 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.||-|..+++..- + | ..+.+.+... ....+||+|- .|.. +.-...+ --|+
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~--e--g----~~~~f~~~~~--~~~~yL~~Sp--ql~~--q~l~~~g-~~rv 206 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIATAT--E--G----GTELFPMKYF--EEDAFLAQSP--QLYK--QIMMASG-LDRV 206 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS--S--C----SSSCCEEEET--TEEEEECSCS--HHHH--HHGGGTT-CCEE
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecCCC--C--C----CccceeEeeC--CccEEEecCh--HHHH--HHHHhcC-CCce
Confidence 4677899999999999999999987531 1 1 0111121110 1123455543 3321 1222122 3599
Q ss_pred EEeCcEEecCCccc-cccccceEEEEEEecCCCChhHhhhhHHHHH
Q psy15928 85 FEISDIVYKDATAE-VGARNQRNLVAVYYNKSPGFEIIHGLLDRVM 129 (485)
Q Consensus 85 FEiG~Vf~~~~~~~-~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~ 129 (485)
||||++|+.++... .+..|.+.|-+=+++.. +++++....+.++
T Consensus 207 f~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~-~~~d~m~~~E~li 251 (438)
T 3nem_A 207 YEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE-DEEEVMSFLERLV 251 (438)
T ss_dssp EEEEEEECCCSSCCTTCCSEEEEEEEEEESCS-SHHHHHHHHHHHH
T ss_pred EEEcceEECCCCCCcccccceeeeeeeeccCc-cHHHHHHHHHHHH
Confidence 99999999776532 23346677776666532 1556655555443
No 78
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=71.82 E-value=2.5 Score=37.12 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCceeec-CCCcccccCccccCcccceecCCceEEE
Q psy15928 273 PVYPVITD-QNGVVLSLPPIINSHHSRISVNTRNIFI 308 (485)
Q Consensus 273 ~~~p~i~D-~~~~ilslaGImg~~~s~V~~~Tk~Ill 308 (485)
.+.|++++ +++ +++++|+..+....++++|++++.
T Consensus 91 ~~~Pll~~~~~~-IiwV~G~~~s~~~kv~~~T~~vl~ 126 (142)
T 3hj7_A 91 DRWPIVEDADGR-ILWVPGLKKSAFEAQNRGQARYIL 126 (142)
T ss_dssp TTCCEEECTTCC-EEEETTTEEBTTSCCCSCCSCEEE
T ss_pred CCceEEEECCCe-EEEEeCeeeccceeeCCCCCEEEE
Confidence 56899998 566 689999999999999999998763
No 79
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=71.15 E-value=3.3 Score=45.57 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=30.8
Q ss_pred chhhhhhhhhchHHH----HHHHHHhcCCCCCeeEEEeCcEEecC
Q psy15928 54 TLEFQIARTTLVPGL----LKTLAANKKMPLPLKLFEISDIVYKD 94 (485)
Q Consensus 54 s~e~s~LR~SLlpgL----Le~~~~N~~~~~~~rlFEiG~Vf~~~ 94 (485)
+...-+|||-...|+ -+.+..|. +..++++++||++|+.+
T Consensus 236 ~~~~~~LRPEtaqg~f~~f~r~~~~~~-~~LP~~~aqiG~~fRnE 279 (693)
T 2zt5_A 236 GNMPGYLRPETAQGIFLNFKRLLEFNQ-GKLPFAAAQIGNSFRNE 279 (693)
T ss_dssp SSSEEEECSCSHHHHHTTHHHHHHHTT-TCSCEEEEEEEEEECCC
T ss_pred CCcceeeccccchHHHHHHHHHHHHhC-cCCCEEEEeecceecCC
Confidence 345567899999998 56666663 35689999999999976
No 80
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=70.93 E-value=2.8 Score=44.59 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=78.2
Q ss_pred hHHHHHHHH-HHHHCCCeEeeccceechhhhHHHhcccCC-CCCcEEee-----C------------------------C
Q psy15928 4 NKLSDQLRG-DIAQAGFTEVLTFALCSRDDVSVKLRQKME-DIPAVHIG-----N------------------------P 52 (485)
Q Consensus 4 ~~~~~klr~-~L~~~Gf~Evitysf~s~~~~~~~~~~~~~-~~~~v~I~-----N------------------------P 52 (485)
+.+++.+++ .+...||+|+.+..|++.+.. +.-|.-.. ....+++. + +
T Consensus 235 ~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~-~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~ 313 (522)
T 2cja_A 235 RTFEKIVLEELLEPLGYREMIFPKLVTWEVW-MKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEK 313 (522)
T ss_dssp HHHHHHHHHHTHHHHTCEECBCCSEEEHHHH-HHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCCcccHHHH-hhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccc
Confidence 356666775 477889999999999998854 55553211 12344553 1 1
Q ss_pred CchhhhhhhhhchHHHHHHHHHhcC-C-CCCeeEEE-eCcEEecCCccccc---cccceEEEEEEecCCC----ChhHhh
Q psy15928 53 KTLEFQIARTTLVPGLLKTLAANKK-M-PLPLKLFE-ISDIVYKDATAEVG---ARNQRNLVAVYYNKSP----GFEIIH 122 (485)
Q Consensus 53 ls~e~s~LR~SLlpgLLe~~~~N~~-~-~~~~rlFE-iG~Vf~~~~~~~~~---~~e~~~l~~~l~G~~~----~~~~~~ 122 (485)
+..+.-+|||+--+++....+.+.. . ..+++++. +|++|+.+.+...+ .+|.+..-+...+... .+.++.
T Consensus 314 ~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i 393 (522)
T 2cja_A 314 IAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522)
T ss_dssp BCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred cCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHH
Confidence 1234458999888888877775532 2 35899999 99999987431111 2344444444444211 123333
Q ss_pred -hhHHHHHHhhCCC
Q psy15928 123 -GLLDRVMQLLQIP 135 (485)
Q Consensus 123 -~~~~~~~~~~~~~ 135 (485)
.....+++.||++
T Consensus 394 ~~~~~~~l~~LGLp 407 (522)
T 2cja_A 394 DRYMHIFNDILDIE 407 (522)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHcCCC
Confidence 4445555777775
No 81
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=67.69 E-value=20 Score=38.73 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=64.3
Q ss_pred HHHHHHHHHHH-HCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCee
Q psy15928 5 KLSDQLRGDIA-QAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 83 (485)
Q Consensus 5 ~~~~klr~~L~-~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~r 83 (485)
++.+.+|++|. ..||.||-|.-++.... . | ....+.-.|-. ...-+||+| |.|..-..- ..+ --|
T Consensus 153 ~i~~~iR~f~~~~~gF~EVeTPiL~~st~--~--G----A~~F~v~~~~~-g~~~~L~qS--pql~kq~l~--v~g-~~r 218 (617)
T 4ah6_A 153 QMVMKMREYLCNLHGFVDIETPTLFKRTP--G--G----AKEFLVPSREP-GKFYSLPQS--PQQFKQLLM--VGG-LDR 218 (617)
T ss_dssp HHHHHHHHHHHTTSCCEECCCCSSBCCCC--S--S----SCCCEEECSST-TCEEECCSS--TTHHHHHHH--HTS-CSE
T ss_pred HHHHHHHHHHHhcCCeEEEeCCeeccCCC--C--C----CcCceeccccC-CcccccccC--HHHHHHHHH--hcc-cCc
Confidence 45678999997 69999999999985321 0 1 01111111111 112245655 222221110 012 248
Q ss_pred EEEeCcEEecCCccccccccceEEEEEEecCCCChhHhhhhHHHHHHhh
Q psy15928 84 LFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLL 132 (485)
Q Consensus 84 lFEiG~Vf~~~~~~~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~~~ 132 (485)
+||||+||+.++.......|.+.|-.=++.- +++++....+.++..+
T Consensus 219 vfqi~~~FR~E~~~t~r~pEFt~lE~e~af~--d~~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 219 YFQVARCYRDEGSRPDRQPEFTQIDIEMSFV--DQTGIQSLIEGLLQYS 265 (617)
T ss_dssp EEEEEEEECCCSSCSSSCSEEEEEEEEEESC--CHHHHHHHHHHHHHHH
T ss_pred EEEEEhheecccCCCCcCcceecceeeecCC--CHHHHHHHHHHHHHHH
Confidence 9999999998765433344566776655552 4778888888777765
No 82
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=61.17 E-value=33 Score=35.62 Aligned_cols=108 Identities=12% Similarity=-0.024 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHCCCeEeeccceechhhhHHHhcccCCCCCcEEeeCCCchhhhhhhhhchHHHHHHHHHhcCCCCCeeE
Q psy15928 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 84 (485)
Q Consensus 5 ~~~~klr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~~~v~I~NPls~e~s~LR~SLlpgLLe~~~~N~~~~~~~rl 84 (485)
++.+.+|++|...||.||-|..++...- + |. .....+ |-... ..+||+|-=--+ +.+.- . --|+
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~--e--Gg----~~~f~~-~~~~~-~~~L~~SpqL~l-q~l~~----g-~~rV 224 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQC--E--GG----STLFKL-QYFNE-PAYLTQSSQLYL-ESVIA----S-LGKS 224 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEE-EETTE-EEEECSCCHHHH-HTTHH----H-HSSE
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCC--C--Cc----cccccc-cccCC-CcccccCHHHHH-HHHHh----c-cCcE
Confidence 4677899999999999999999976431 1 10 001111 11111 113333321111 11110 1 1478
Q ss_pred EEeCcEEecCCcc-ccccccceEEEEEEecCCCChhHhhhhHHHHHH
Q psy15928 85 FEISDIVYKDATA-EVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 130 (485)
Q Consensus 85 FEiG~Vf~~~~~~-~~~~~e~~~l~~~l~G~~~~~~~~~~~~~~~~~ 130 (485)
||||++|+.++.. ..+..|.+.|-.=+++. +++++-...+.++.
T Consensus 225 yeig~~FR~E~~~t~rH~pEFtmlE~e~af~--d~~d~m~~~E~li~ 269 (456)
T 3m4p_A 225 FCMLSSYRAEQSRTVRHLAEYLHLEAELPFI--SFEDLLNHLEDLVC 269 (456)
T ss_dssp EEEEEEECCCSCCCSSCCSEEEEEEEEEESC--CHHHHHHHHHHHHH
T ss_pred EEEEhheecCCCCCCcchHHHHHhHHHHhcC--CHHHHHHHHHHHHH
Confidence 9999999977542 23344666776666553 35666666655443
No 83
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=38.77 E-value=65 Score=23.90 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhcCCEEEEecC--------CCeEEEEcCCCCCCCCccchhhhhhHhhhccC
Q psy15928 399 SESTDKVASLLTKMCLQTKILGS--------GAELSVSIPPTRHDIIHTCDIYEDIAIAYGYN 453 (485)
Q Consensus 399 ~~~~~~i~~~L~~l~~~~~~~~~--------~~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~ 453 (485)
.++..|++++|++.||.....++ +.. .|+||..+.| ...-++..|.+-.|..
T Consensus 4 p~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~-~~~vP~h~~e--i~~g~lk~Ilkqagl~ 63 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKGGHRLYTHPDGR-IVVVPFHSGE--LPKGTFKRILRDAGLT 63 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEETTEEEEECTTSC-EEEEECSSSS--CCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHCCCEEeCCCCCCceEecCCCC-eeEecCCcCc--CCHHHHHHHHHHcCCC
Confidence 56789999999999998642211 122 6888865554 4556788888877763
No 84
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=25.06 E-value=47 Score=25.57 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=27.7
Q ss_pred hhhhhhhhchHHHHHHHHHhcCCCC-CeeEEEeCc
Q psy15928 56 EFQIARTTLVPGLLKTLAANKKMPL-PLKLFEISD 89 (485)
Q Consensus 56 e~s~LR~SLlpgLLe~~~~N~~~~~-~~rlFEiG~ 89 (485)
|+..|+...++-|.+.+..+...++ -+-+||||.
T Consensus 5 DLRhLk~~f~~rm~ei~~~~~~~gEV~IFlFEigD 39 (76)
T 2lxr_A 5 DLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGD 39 (76)
T ss_dssp ECGGGTTTTHHHHHHHHHTTSCTTCEEEEEECSSC
T ss_pred chhhhHHHHHHHHHHHHHhccCCCcEEEEEEEecC
Confidence 4556777889999999999987764 689999996
No 85
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=21.36 E-value=56 Score=26.13 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCCCCCccchhhhhhHhhhccCCCCCC
Q psy15928 423 AELSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKT 458 (485)
Q Consensus 423 ~~~~v~~P~~R~Di~~~~DiiEei~r~yGy~~i~~~ 458 (485)
+.|.|.||. -.|.+++||+-+||.|+-+.
T Consensus 13 n~waV~i~~-------g~~~A~~iA~k~GF~nlGqI 41 (90)
T 1kn6_A 13 NEWAAEIPG-------GQEAASAIAEELGYDLLGQI 41 (90)
T ss_dssp CCEEEECSS-------THHHHHHHHHHHTCEECCCC
T ss_pred eeEEEEccC-------cHHHHHHHHHHcCcEEeccC
Confidence 359999853 35799999999999998754
Done!