RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15928
(485 letters)
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta
chain.
Length = 597
Score = 262 bits (671), Expect = 6e-81
Identities = 103/210 (49%), Positives = 135/210 (64%), Gaps = 24/210 (11%)
Query: 261 QLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKAKI 320
+LK++L II +SPV+PVI D N VLSLPPIIN HS I+++T+N+FIECTATDLTKAKI
Sbjct: 211 KLKKFLHIIENSPVFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATDLTKAKI 270
Query: 321 VLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQ 380
VL+T+VTMFS+YC K+ VE EV+ DG S YP+L VR V++ IG++ +
Sbjct: 271 VLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYINSSIGVSLDAE 330
Query: 381 SPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILG-SGAELSVSIPPTRHDIIHT 439
+VASLL KM LQ + G + VS+PPTR DI+H
Sbjct: 331 -----------------------EVASLLNKMQLQAEQSSDDGCTIRVSVPPTRSDILHP 367
Query: 440 CDIYEDIAIAYGYNNIPKTMPRFASIARQL 469
CD+ ED+AIAYGYNNIPK P+ ++ +Q
Sbjct: 368 CDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397
Score = 246 bits (629), Expect = 8e-75
Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 40/239 (16%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
PLN+ SD LR ++A AGFTEVLT+ LCS + L ++ + AV IGNP++ +F++ R
Sbjct: 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVR 457
Query: 62 TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
T+L+PGLLKTL NK P P+KLFE+SD+V D + +VGARN R L A+Y + GFE+I
Sbjct: 458 TSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVI 517
Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
HGL+DR+M++L IP + +
Sbjct: 518 HGLVDRIMEVLGIP----------------------------------------FVEIGD 537
Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
GY ++ ++ +FP R A+++ +G +GT G++HPEVL F++ PCS LE+++EP
Sbjct: 538 NNGYYVEPSNEPEYFPGRQASIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPL 596
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit.
Every known example of the phenylalanyl-tRNA synthetase,
except the monomeric form of mitochondrial, is an alpha
2 beta 2 heterotetramer. The beta subunits break into
two subfamilies that are considerably different in
sequence, length, and pattern of gaps. This model
represents the subfamily that includes the beta subunit
from eukaryotic cytosol, the Archaea, and spirochetes
[Protein synthesis, tRNA aminoacylation].
Length = 551
Score = 166 bits (421), Expect = 2e-45
Identities = 75/209 (35%), Positives = 102/209 (48%), Gaps = 28/209 (13%)
Query: 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKA 318
H + +Y II DS +P+I D VLS+PPIINS ++++VNTRN+ I+ T TD T
Sbjct: 180 HPKGIRYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRNLLIDVTGTDKTAV 239
Query: 319 KIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQG 378
+I L+ TMF+ + + V EV R D P L R V+V+ +G+
Sbjct: 240 EITLNIACTMFADRGDGRITVV--EVERPDE-HLGQPNLAPRFMEVSVEYINSLLGLNL- 295
Query: 379 GQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIH 438
S D++A L KM L S +L V IP R DI+H
Sbjct: 296 ----------------------SADEIAHSLKKMRLDAVQ--SDEKLKVVIPAYRVDILH 331
Query: 439 TCDIYEDIAIAYGYNNIPKTMPRFASIAR 467
DI ED+AI YGYNN P +P +I R
Sbjct: 332 EVDIIEDVAIGYGYNNFPPELPLINTIGR 360
Score = 149 bits (377), Expect = 3e-39
Identities = 77/239 (32%), Positives = 108/239 (45%), Gaps = 51/239 (21%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
PLNK+SD +R + GF EV+ L S + ++R ED V + NPKTLE+ I R
Sbjct: 363 PLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI--EDNNDVKVANPKTLEYTIVR 420
Query: 62 TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
T+L+PGLL+TL+ NK LP K+FEI D+V KD +E +R L + F I
Sbjct: 421 TSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEI 480
Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
++ + + L I
Sbjct: 481 KSIVAALARELGI----------------------------------------------- 493
Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
Y I+ +++ +F P R A ++ G IG G +HPEVL FEL P S E+NIE F
Sbjct: 494 --EYEIEESEHPSFIPGRGAKIVFEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVF 550
>gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta
chain core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its
structure. While class II aaRSs generally aminoacylate
the 3'-OH ribose of the appropriate tRNA, PheRS is an
exception in that it attaches the amino acid at the
2'-OH group, like class I aaRSs. PheRS is an alpha-2/
beta-2 tetramer. While the alpha chain contains a
catalytic core domain, the beta chain has a
non-catalytic core domain.
Length = 198
Score = 152 bits (385), Expect = 1e-43
Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 43/240 (17%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
PL KL +LR +A GF EV+T++L S ++ + AV + NP + E+ + R
Sbjct: 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDG---GLDEAVELSNPLSEEYSVLR 57
Query: 62 TTLVPGLLKTLAANKKMP-LPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEI 120
T+L+PGLL LA N PL+LFEI + KD E G + +L A+
Sbjct: 58 TSLLPGLLDALARNLNRKNKPLRLFEIGRVFLKD---EDGPEEEEHLAALLSGNREP--- 111
Query: 121 IHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLD 180
Q P+D F G+L+ +++ L I ++
Sbjct: 112 ------ESWQGKGRPVD-----------------------FYDAKGILEALLRALGIIVE 142
Query: 181 KTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
+ ++ D F P R A + + G IG +G LHPEVL +F+L P E++++
Sbjct: 143 ----FELEELDADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 552
Score = 152 bits (386), Expect = 2e-40
Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 29/209 (13%)
Query: 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTKA 318
H + K+Y +++D YP+I D G VLS PPIINS +R++ TRN+FI+ T TDL
Sbjct: 178 HPKGKEYGHLLKDFDRYPLIVDSEGNVLSFPPIINSELTRVTEGTRNLFIDVTGTDLEAV 237
Query: 319 KIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQG 378
+ L+ + T + E +ES +V+ DG P+L R V+V+ K +GI
Sbjct: 238 LLALNIIATALA---ERGGTIESVKVIYPDGE-LTTPDLTPRTREVSVEYINKLLGI--- 290
Query: 379 GQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIH 438
D+SA +++ LL +M +I ++ V++PP R DI+H
Sbjct: 291 ------DLSA--------------EEIIELLERMRYDAEI--GDDKVKVTVPPYRVDILH 328
Query: 439 TCDIYEDIAIAYGYNNIPKTMPRFASIAR 467
D+ ED+AIAYGYNN+ +P+ +I R
Sbjct: 329 EVDVIEDVAIAYGYNNLEPELPKVFTIGR 357
Score = 136 bits (346), Expect = 7e-35
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 50/239 (20%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
P+ KL +R + GF EV+ F L S + + K+ + E+ V + NP + ++ + R
Sbjct: 360 PIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY-VEVLNPISEDYTVVR 418
Query: 62 TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
T+L+P LL+ L+ NK P K+FEI D+V D + E G R +R L A + F I
Sbjct: 419 TSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEI 478
Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
++ +++ L I +
Sbjct: 479 KSVVQALLRELGIEYE-------------------------------------------- 494
Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
++ +++ +F P RCA++++ G KIG +G +HPEVL F + +P EI++E
Sbjct: 495 -----VEESEHPSFIPGRCADILVNGKKIGVIGEIHPEVLENFGIEVPVVAFEIDLEAL 548
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit
[Translation, ribosomal structure and biogenesis].
Length = 650
Score = 143 bits (363), Expect = 6e-37
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 50/258 (19%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
PL K ++R + GF EV+T++L S ++ + + E A+ + NP + E+ + R
Sbjct: 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDE---ALELANPISEEYSVLR 408
Query: 62 TTLVPGLLKTLAANKKMPLP-LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEI 120
T+L+PGLL+ L+ NK P +++FEI D+ KD AE R+ L A +
Sbjct: 409 TSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAERETRHLAGLAAGLAGEES---- 464
Query: 121 IHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLD 180
+ F G L+ +++ L + +
Sbjct: 465 --------------------------------WQGKRPVDFYDAKGDLEALLEALGVEYE 492
Query: 181 KTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
+ A++ F P R A + L IG +G LHPEVL +F+L P + EI+++
Sbjct: 493 ------FEPAEHPAFHPGRSAAIYLNKEVIGFIGELHPEVLKEFDLPGPVYVFEIDLDAL 546
Query: 241 NFAKML----YSPFNSCF 254
K S F +
Sbjct: 547 LKRKKPAYKPISKFPAVR 564
Score = 123 bits (311), Expect = 5e-30
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 268 IIRDSPVYPVITDQNGVVLSLPPIINSHHSR-ISVNTRNIFIECTATDLTKAKIVLDTLV 326
DS V P TD V S PPII S SR + ++T F D + L+
Sbjct: 179 GGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEKALNRAT 238
Query: 327 TMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQGGQSPDQDV 386
T+ ++ C + V S ++ D ++++R E +N + +G+
Sbjct: 239 TLLAEICGGE--VSSVVIVGGDEKLTPPRKIELRLERIN-----RLLGLEL--------- 282
Query: 387 SADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDI 446
S +++ +L ++ + ++ G G L+V++P R DI+ D+ E++
Sbjct: 283 --------------SAEEIEKILKRLGFKVEVKGDG--LTVTVPSYRVDILIEADLIEEV 326
Query: 447 AIAYGYNNIPKTMPRFASIAR 467
A YGYNNIP +P +I R
Sbjct: 327 ARIYGYNNIPPELPSAFTIGR 347
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 791
Score = 87.1 bits (217), Expect = 4e-18
Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 45/238 (18%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
+L +LR +A G+ EV+T++ S +D + + + + NP + E + R
Sbjct: 488 EAQRLLRRLRRALAALGYQEVITYSFVSPED----AKLFGLNPEPLLLLNPISEELSVMR 543
Query: 62 TTLVPGLLKTLAANKKMPLP-LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEI 120
T+L+PGLL+ +A N + LFEI + D + +A +
Sbjct: 544 TSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG----DLPREPEHLAG---------V 590
Query: 121 IHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLD 180
+ G + P+D + K G ++ +++ L +P
Sbjct: 591 LTGNRVEESWGGKRPVD---------------FFDLK--------GDVEALLEALGLPEV 627
Query: 181 KTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIE 238
+ + A P R A + L G IG +G LHP+VL K +L + E++++
Sbjct: 628 EFV----AEFEAAALHPGRSAEIYLDGKVIGFIGELHPKVLKKLDLPGRTYVFELDLD 681
Score = 62.5 bits (153), Expect = 3e-10
Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 62/220 (28%)
Query: 277 VITDQNGVVLSLPPIINSHHSRISVNTRNIFIEC----------TA------TDLTK--- 317
VI D + +L ++ S ++ NT N+ +E TA TD +
Sbjct: 302 VIADDKKPL-ALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFE 360
Query: 318 -------AKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEV-VNVKKA 369
+ L+ + + EV +G YP L + + +++
Sbjct: 361 RGVDPALTLLALERATALILELG-------GGEV--VEGVVDVYP-LPKEPTITLRLERI 410
Query: 370 TKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSI 429
+ +G ++S ++ + +L ++ + G L+V++
Sbjct: 411 NRLLGT---------EISDEE--------------IVDILKRLGFEVTE-VDGDGLTVTV 446
Query: 430 PPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQL 469
P R DI D+ E++A YGY+NIP T P A L
Sbjct: 447 PSWRFDIEIEEDLVEEVARIYGYDNIPSTPPVAALTMGGL 486
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit,
non-spirochete bacterial. Every known example of the
phenylalanyl-tRNA synthetase, except the monomeric form
of mitochondrial, is an alpha 2 beta 2 heterotetramer.
The beta subunits break into two subfamilies that are
considerably different in sequence, length, and pattern
of gaps. This model represents the subfamily that
includes the beta subunit from Bacteria other than
spirochetes, as well as a chloroplast-encoded form from
Porphyra purpurea. The chloroplast-derived sequence is
considerably shorter at the amino end, however, so This
model was built in fragment mode [Protein synthesis,
tRNA aminoacylation].
Length = 797
Score = 79.6 bits (197), Expect = 9e-16
Identities = 63/279 (22%), Positives = 110/279 (39%), Gaps = 66/279 (23%)
Query: 3 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIART 62
L KL L G G EV+T++ + + + V I NP + E + RT
Sbjct: 496 LRKLRTLLVG----LGLNEVITYSFVDPEKA--EKFNFPKLENLVEIKNPLSNERSVLRT 549
Query: 63 TLVPGLLKTLA--ANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEI 120
+L+P LL+ LA N+K +K+FEI + KD A + Q L +
Sbjct: 550 SLLPSLLEVLAYNQNRKNKD-VKIFEIGKVFAKDGEA---VKEQLRLAILIS-------- 597
Query: 121 IHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLD 180
G + N + F + G ++ +++LL +
Sbjct: 598 --------------------GEKNPSSWNHKEEKVD----FYDLKGDVESLLELLGL--- 630
Query: 181 KTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
+ Y A+N P + A + L+G KIG +G LHPE+ K++L P + E++++
Sbjct: 631 SDDVYFKNTAENEELHPGQSATIYLKGKKIGFIGELHPEIAKKYDLKEPTFVFELDLD-- 688
Query: 241 NFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPVIT 279
++L + + +P R +P +T
Sbjct: 689 ---RLL--------------ESLKKVPKYRPISKFPAVT 710
Score = 56.9 bits (138), Expect = 1e-08
Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 62/219 (28%)
Query: 276 PVITDQNGVVLSLPPIINSHHSRISVNTRNIFIEC---TATDLTKAKI------------ 320
VI D L++ ++ S ++ T NIF+E + K
Sbjct: 304 LVIADDKKP-LAIAGVMGGKESGVTDTTTNIFLESAYFNPESIRKTARRLGISTDSSYRF 362
Query: 321 -----------VLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEV-VNVKK 368
LD + + + EV+ S Y E K++ + +KK
Sbjct: 363 ERGVDPELTELALDRALNLILEIF-------GGEVI--SVVSDNYKEKAKEKKISLRIKK 413
Query: 369 ATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVS 428
K +GI S ++V +L ++ + + V+
Sbjct: 414 LNKILGI-----------------------ELSDEEVRDILKRLGFKVEK--QKDGWEVT 448
Query: 429 IPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIAR 467
+P RHDI D+ E+IA YGY+NIP +S
Sbjct: 449 VPSYRHDIEIEEDLIEEIARIYGYDNIPAEPLSVSSKLN 487
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 68
Score = 60.2 bits (147), Expect = 8e-12
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 398 FSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGY 452
+++ +L ++ + ++ SG L V++P R DI+ D+ E++A YGY
Sbjct: 16 LEILAEEIEEILKRLGFEVEV--SGDTLEVTVPSYRFDILIEADLIEEVARIYGY 68
>gnl|CDD|202662 pfam03483, B3_4, B3/4 domain. This domain is found in tRNA
synthetase beta subunits as well as in some non tRNA
synthetase proteins.
Length = 159
Score = 62.2 bits (152), Expect = 1e-11
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 27/88 (30%)
Query: 272 SPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTA------------------- 312
P VI D +G V +L I+ S ++ +T NIF+E
Sbjct: 72 DPGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAYFDPVAIRKTSRKLGLRTDA 130
Query: 313 -------TDLTKAKIVLDTLVTMFSQYC 333
D ++ LD + + C
Sbjct: 131 SYRFERGVDPELVELALDRATALILELC 158
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 70
Score = 55.3 bits (134), Expect = 5e-10
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 401 STDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTCDIYEDIAIAYGY 452
S +++ +L ++ + ++ L V++P R DI+H D+ E+IA YGY
Sbjct: 20 SPEEIKKILKRLGFKVEVSDED-TLKVTVPSYRPDILHEVDLIEEIARLYGY 70
>gnl|CDD|214876 smart00873, B3_4, B3/4 domain. This domain is found in tRNA
synthetase beta subunits as well as in some non tRNA
synthetase proteins.
Length = 174
Score = 55.3 bits (134), Expect = 4e-09
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 262 LKQYLPIIRDSPVYPVITDQNGV----------VLSLPPIINSHHS-RISVNTRNIFIEC 310
L + +I D + G V+ L P I S + RI+ T N+F +
Sbjct: 86 LDEGDLVIADDEGPLALAGVMGGEESEVTENTTVIFLEPAIFSPRTIRITARTLNLFTDA 145
Query: 311 TA-----TDLTKAKIVLDTLVTMFSQYCE 334
+ D ++ LD + + C
Sbjct: 146 SGRFERGVDPELVELALDRAAALLLEICG 174
>gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain;
Provisional.
Length = 704
Score = 44.3 bits (105), Expect = 1e-04
Identities = 56/276 (20%), Positives = 93/276 (33%), Gaps = 52/276 (18%)
Query: 237 IEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYPV-----ITDQNGVVLSLPPI 291
IE ++ K+ S + + L++ I +S + + N V++S+ I
Sbjct: 157 IEIYDLDKIYSKNTTSSLALSSKFALQKSSFIASNSKNIELENNILVVQANNVIISIAGI 216
Query: 292 INSHHSRISVNTRNIFIE---CTATDLTKAKIVLDTLVTMFSQYCED--------KYHVE 340
I++ NT++I IE A + K+ L L T S E + +
Sbjct: 217 ISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLG-LRTDRSIRYEKSLKNDNLLEAYYR 275
Query: 341 SCEVLRSDG--------TSARYPELKVRKEVVNVKKATKYIG-ITQGGQSPDQDVSADKD 391
+LR + + R+ ++ KK +G I
Sbjct: 276 LVSLLRILNPKLKCKFHFIYKKIKNSSRRIKLSYKKIKDILGPIKINTN----------- 324
Query: 392 PLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRH-DIIHTCDIYEDIAIAY 450
L E T+ + L K+ + L V IP R DI+ D+ E+IA Y
Sbjct: 325 -TRYLSPKEITNALKRLNFKITYDSLKL----NWEVLIPSYRKDDIVREIDVIEEIARIY 379
Query: 451 GYNNIPKTMPRFASIARQLFF---------IFTCLG 477
G+NN +P I R LG
Sbjct: 380 GFNNFLSKLPNIKFIGRLDIDYNTRDKIRSYLRNLG 415
Score = 30.8 bits (70), Expect = 2.1
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 195 FFPQRCANVML-RGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPFNFAKMLYSPFNSC 253
F P + + L G KIG G LHP + K L + EIN++ ++ N+
Sbjct: 548 FHPYCTSEIFLSNGQKIGIFGQLHPLLANKLNLNTEIYLFEINLDILQYS----IQQNNL 603
Query: 254 FSSQTHSQLKQYLPIIRD 271
S Q +S Y IIRD
Sbjct: 604 ISYQPYS---SYPKIIRD 618
>gnl|CDD|225917 COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of
Phe-aaRS-beta [General function prediction only].
Length = 229
Score = 31.9 bits (73), Expect = 0.47
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 273 PVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFI------ECTATDLTKAKIVLDTLV 326
V+ D G +S + ++ +T+N+ + DL +A LD+L
Sbjct: 153 EGEIVLVDDEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVPGVEVEDLVEA---LDSLA 209
Query: 327 TMFSQYCE 334
+ +
Sbjct: 210 DLLEKLLG 217
>gnl|CDD|204198 pfam09324, DUF1981, Domain of unknown function (DUF1981). Members
of this family of functionally uncharacterized domains
are found in various plant and yeast protein transport
proteins.
Length = 86
Score = 29.5 bits (67), Expect = 0.83
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 240 FNFAKMLYSPFNSCFSSQTHSQLKQYL 266
F+F K PF S+ + ++K+ +
Sbjct: 12 FHFQKEFLKPFEYIMSNNQNVEVKELV 38
>gnl|CDD|131098 TIGR02043, ZntR, Zn(II)-responsive transcriptional regulator. This
model represents the zinc and cadmium (II) responsive
transcriptional activator of the gamma proteobacterial
zinc efflux system. This protein is a member of the MerR
family of transcriptional activators (pfam00376) and
contains a distinctive pattern of cysteine residues in
its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a
conserved and critical cysteine at the N-terminal end of
the dimerization helix [Regulatory functions, DNA
interactions].
Length = 131
Score = 29.4 bits (66), Expect = 1.7
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 24/80 (30%)
Query: 111 YYNKSPGFEIIHGLLDRVMQLLQIPLDKTEG----YCARNQRNLVAVYYNKSPGFEIIHG 166
+Y K +GL+ P +T+ Y +Q+ L + K GF
Sbjct: 20 FYEK-------NGLIK--------PAGRTDSGYRLYTDEDQKRLRFILKAKELGFT---- 60
Query: 167 LLDRVMQLLQIPLDKTEGYC 186
LD + +LL I LD TE C
Sbjct: 61 -LDEIKELLSIKLDATEHSC 79
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 30.7 bits (70), Expect = 1.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 342 CEVLRSDGTSARYPEL 357
CE+++ DGT AR P+L
Sbjct: 163 CEIMKDDGTMARLPDL 178
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate
synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is
biosynthesised from ribulose 5-phosphate and serves as
the biosynthetic precursor for the xylene ring of
riboflavin. Sometimes found as a bifunctional enzyme
with pfam00925.
Length = 193
Score = 29.4 bits (67), Expect = 2.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 342 CEVLRSDGTSARYPELKV 359
CE+L DGT AR P+L+
Sbjct: 157 CEILNDDGTMARLPDLEE 174
>gnl|CDD|183088 PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme
subunit McrB; Provisional.
Length = 459
Score = 29.7 bits (66), Expect = 3.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 178 PLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLH-PEVLGK 223
P+ KTE YC++ A N F P+ +L+ I +L P +GK
Sbjct: 161 PMSKTESYCLEDALNDLFIPETTIETILKRLTIKKNIILQGPPGVGK 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,109,921
Number of extensions: 2307571
Number of successful extensions: 1614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1585
Number of HSP's successfully gapped: 37
Length of query: 485
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 384
Effective length of database: 6,457,848
Effective search space: 2479813632
Effective search space used: 2479813632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)