RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15928
(485 letters)
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 228 bits (583), Expect = 2e-68
Identities = 130/239 (54%), Positives = 160/239 (66%), Gaps = 42/239 (17%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
PLNKL++ LR D+A AGFTE LTFALCS++D++ KL + AVHI NPKT EFQ+AR
Sbjct: 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVAR 451
Query: 62 TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEII 121
TTL+PGLLKT+AAN+KMPLPLKLFEISDIV KD+ +VGA+N R+L AVYYNK+PGFEII
Sbjct: 452 TTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEII 511
Query: 122 HGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDK 181
HGLLDR+MQLL +P + +G
Sbjct: 512 HGLLDRIMQLLDVPPGEDKG---------------------------------------- 531
Query: 182 TEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEPF 240
GY I+A++ FFP RCA + RG +G +GVLHP+V+ KFELT+PCS LEINI PF
Sbjct: 532 --GYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPF 588
Score = 213 bits (544), Expect = 1e-62
Identities = 110/212 (51%), Positives = 141/212 (66%), Gaps = 23/212 (10%)
Query: 258 THSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFIECTATDLTK 317
T + LK YL II + P+YPVI D NGVVLS+PPIIN HSRI+VNTRNIFIECT TD TK
Sbjct: 203 TDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTK 262
Query: 318 AKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQ 377
AKIVLD +VTMFS+YCE+++ VE+ EV+ +G S +PEL RKE+V K +GI
Sbjct: 263 AKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGI-- 320
Query: 378 GGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDII 437
E+ + +A LLT+M L+++++G G ++ + IPPTR DII
Sbjct: 321 ---------------------RETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADII 359
Query: 438 HTCDIYEDIAIAYGYNNIPKTMPRFASIARQL 469
H CDI ED AIAYGYNNI T+P+ +IA Q
Sbjct: 360 HACDIVEDAAIAYGYNNIQMTLPKTYTIANQF 391
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 154 bits (390), Expect = 8e-43
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 259 HSQLKQYLPIIRDSPVYPVITDQNGVVLSLPPIINSHHS-RISVNTRNIFIECTATDLTK 317
H + ++Y +I+D YP++ D G VLS+PPIINS + R++ +T+N+FI+ T L K
Sbjct: 183 HEKGREYGHLIKDKQFYPLLIDSEGNVLSMPPIINSEFTGRVTTDTKNVFIDVTGWKLEK 242
Query: 318 AKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVKKATKYIGITQ 377
+ L+ +VT ++ + S V+ D P+L ++ V + K G+
Sbjct: 243 VMLALNVMVTALAERG---GKIRSVRVVYKDFEI-ETPDLTPKEFEVELDYIRKLSGL-- 296
Query: 378 GGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDII 437
+ ++ LL KM + +I S + P R DI+
Sbjct: 297 ---------------------ELNDGEIKELLEKMMYEVEI--SRGRAKLKYPAFRDDIM 333
Query: 438 HTCDIYEDIAIAYGY 452
H DI ED+ IAYGY
Sbjct: 334 HARDILEDVLIAYGY 348
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 89.1 bits (222), Expect = 6e-19
Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 43/240 (17%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
+ +++ + G+ EV+T++ + + A+ + +P ++E R
Sbjct: 490 EADLSLKRVKTLLNDKGYQEVITYSFVDPKV----QQMIHPGVEALLLPSPISVEMSAMR 545
Query: 62 TTLVPGLLKTLA--ANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFE 119
+L GLL T+ N++ +++FE D A +G R Q ++A
Sbjct: 546 LSLWTGLLATVVYNQNRQQN-RVRIFESGLRFVPDTQAPLGIR-QDLMLAG--------- 594
Query: 120 IIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPL 179
+I G ++ E + + V Y K G L+ V+ L
Sbjct: 595 VICG-------------NRYEEHWNLAKET-VDFYDLK--------GDLESVLDLTGKL- 631
Query: 180 DKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEP 239
+A N P + A + L+G +IG +GV+HPE+ K +L + E+
Sbjct: 632 ---NEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNK 688
Score = 60.2 bits (147), Expect = 9e-10
Identities = 38/221 (17%), Positives = 66/221 (29%), Gaps = 63/221 (28%)
Query: 277 VITDQNGVVLSLPPIINSHHSRISVNTRNIFIEC----------TA-------------- 312
VI D N + ++ I HS ++ T+N+ +EC A
Sbjct: 303 VIADHNKAL-AMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYE 361
Query: 313 --TDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARY-PELKVRKEV-VNVKK 368
D ++ + C E L R + + K
Sbjct: 362 RGVDPALQHKAMERATRLLIDIC-------GGEA--GPVIDITNEATLPKRATITLRRSK 412
Query: 369 ATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVS 428
+ IG ++ ++ V +L + L ++ E
Sbjct: 413 LDRLIGH---------HIADEQ--------------VTDILRR--LGCEVTEGKDEWQAV 447
Query: 429 IPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQL 469
P R D+ D+ E++A YGYNNIP + + I
Sbjct: 448 APSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTH 488
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 88.7 bits (221), Expect = 8e-19
Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 50/240 (20%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIAR 61
L + L G AG + +T++L S+D +++ P + + P + R
Sbjct: 498 KTRTLKETLEG----AGLNQAITYSLVSKDHAK---DFALQERPTISLLMPMSEAHATLR 550
Query: 62 TTLVPGLLKTLAAN--KKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFE 119
+L+P L++ A N +K ++L+EI + + + E+ ++ ++
Sbjct: 551 QSLLPHLIEATAYNVARKNK-DVRLYEIGRVFFGNGEGELP--DEVEYLSG--------- 598
Query: 120 IIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPL 179
I+ G + + + + K G++DRV + L +
Sbjct: 599 ILTG-------------EYVVNAWQGKKEE-IDFFIAK--------GVVDRVAEKLNLEF 636
Query: 180 DKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIEP 239
+A P R A V L G IG +G LHP+V +L + E+N +
Sbjct: 637 S------YKAGKIEGLHPGRTAIVSLEGQDIGFIGELHPQVAADNDLK-RTYVFELNYDA 689
Score = 67.9 bits (167), Expect = 3e-12
Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 62/217 (28%)
Query: 277 VITDQNGVVLSLPPIINSHHSRISVNTRNIFIEC----------TA-------------- 312
VI++ + +L ++ S ++ T N+ IE T+
Sbjct: 307 VISNGQEPI-ALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFE 365
Query: 313 --TDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEV-VNVKKA 369
+D + + S EV + + + +K
Sbjct: 366 KGIATEFVDEAVDRACYLLQELA-------SGEV--LQDRVSSGDLGSFVTPIDITAEKV 416
Query: 370 TKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSVSI 429
K IG ++S D+ + S+ + L + G L+V++
Sbjct: 417 NKTIGF---------NLSNDE--------------IQSIFRQ--LGFETTLKGETLTVNV 451
Query: 430 PPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA 466
P R DI D+ E++A YGY+ IP ++P F +
Sbjct: 452 PSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVT 488
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1,
phenylalanyl-tRNA SYNT beta subunit, structural
genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas
gingivalis}
Length = 213
Score = 83.5 bits (207), Expect = 1e-18
Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 51/245 (20%)
Query: 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIP---AVHIGNPKTLEFQIAR 61
K + + AGF E+L +L + + ++ P AV + NP + E R
Sbjct: 8 KWQTVVSEQLVGAGFNEILNNSL-----TAGSYYEGLKSHPREMAVELMNPLSQELNCMR 62
Query: 62 TTLVPGLLKTLA--ANKKMPLPLKLFEISDIVYKDATAE-----VGARNQRNLVAVYYNK 114
TL+ G L+TL+ +K L LFE A + A + + + +
Sbjct: 63 QTLLFGGLETLSHNLRRKHL-SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGI---- 117
Query: 115 SPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQL 174
I G + A + +V+ K ++++V+
Sbjct: 118 -----WICG-------------QRVHNSWAHPEEP-TSVFELK--------AVVEQVLCR 150
Query: 175 LQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILE 234
+ I + + G +GT G + E++ +FE+ P E
Sbjct: 151 VGIETGAYT----LKTADNDLYASAMEVKTRSGKLLGTFGTVSTELIKRFEIEQPVYFAE 206
Query: 235 INIEP 239
+ +
Sbjct: 207 LLWDA 211
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural
genomics, midwest center for structural GE protein
structure initiative; HET: MSE; 2.09A {Bacteroides
fragilis}
Length = 213
Score = 81.2 bits (201), Expect = 8e-18
Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 51/246 (20%)
Query: 4 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIP---AVHIGNPKTLEFQIA 60
NKL + + + GF E+L +L +E P V + NP + +
Sbjct: 7 NKLQNLVAEQLVGCGFNEILNNSL-----TRAAYYDGLESYPSKNLVMLLNPLSADLNCM 61
Query: 61 RTTLVPGLLKTLA--ANKKMPLPLKLFEISDIVYKDATAE-----VGARNQRNLVAVYYN 113
R TL+ G L+++A AN+K LK FE + + DA + + ++ + +
Sbjct: 62 RQTLLFGGLESIAHNANRKNA-DLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGL--- 117
Query: 114 KSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQ 173
+ G A N +VY K ++ + +
Sbjct: 118 ------WVTG-------------KMVSNSWAHADEN-TSVYELK--------AYVENIFK 149
Query: 174 LLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSIL 233
L + L + + G ++ T GV+ ++L F++
Sbjct: 150 RLGLDLHSLV----VGNLSDDIYSTALTVNTKGGKRLATFGVVTKKMLKAFDVDNEVYYA 205
Query: 234 EINIEP 239
++N +
Sbjct: 206 DLNWKE 211
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 81.4 bits (202), Expect = 2e-16
Identities = 47/236 (19%), Positives = 84/236 (35%), Gaps = 54/236 (22%)
Query: 5 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTL 64
+ +LR ++ GF EV T++ +D R+ D P + + NP E RT L
Sbjct: 493 RKEQRLREVLSGLGFQEVYTYSFMDPED----ARRFRLDPPRLLLLNPLAPEKAALRTHL 548
Query: 65 VPGLLKTLAAN--KKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIH 122
PGL++ L N P LFE+ V++ + +A ++
Sbjct: 549 FPGLVRVLKENLDLDRPERALLFEVGR-VFR--------EREETHLAG---------LLF 590
Query: 123 GLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKT 182
G + + + K G L+ + L +
Sbjct: 591 GEGVGLPWAKERLSG---------------YFLLK--------GYLEALFARLGLAFR-- 625
Query: 183 EGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINIE 238
++A P V++ G ++G +G LHPE+ + EL P + E+ +
Sbjct: 626 ----VEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLP 676
Score = 58.3 bits (142), Expect = 4e-09
Identities = 32/217 (14%), Positives = 57/217 (26%), Gaps = 63/217 (29%)
Query: 277 VITDQNGV---VLSLPPIINSHHSRISVNTRNIFIEC----------TA----------- 312
VI G L L ++ S + +T I +E TA
Sbjct: 299 VIAGWRGEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASH 358
Query: 313 -----TDLTKAKIVLDTLVTMFSQYCEDKYHVESCEVLRSDGTSARYPELKVRKEVVNVK 367
D +++ V ++ +
Sbjct: 359 RFERGVDPLGQVPAQRRALSLLQALA-------GARV--AEALLEAGSPKPPEAIPFRPE 409
Query: 368 KATKYIGITQGGQSPDQDVSADKDPLNGLCFSESTDKVASLLTKMCLQTKILGSGAELSV 427
A + +G + ++L + L ++ G G V
Sbjct: 410 YANRLLGT---------SYPEAE--------------QIAILKR--LGCRVEGEGPTYRV 444
Query: 428 SIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFAS 464
+ P R D+ D+ E++A GY IP +P F
Sbjct: 445 TPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFP 481
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 68/487 (13%), Positives = 138/487 (28%), Gaps = 134/487 (27%)
Query: 20 TEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP 79
E +D +SV +++ + + K++ + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDV----------------QDMPKSILSKE--- 49
Query: 80 LPLKLFEISDIVYKDATAEVGAR--------NQRNLVAVYYNKS--PGFEIIHGLLDRVM 129
EI I+ A G Q +V + + ++ L+ +
Sbjct: 50 ------EIDHII-MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIK 99
Query: 130 QLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQA 189
+ P T Y QR+ YN + F + + R+ L++ QA
Sbjct: 100 TEQRQPSMMTRMY--IEQRD---RLYNDNQVFAKYN--VSRLQPYLKL---------RQA 143
Query: 190 ADNATFFPQRCANVMLRGSKIGTMG-----VLHPEVL--GKFELTLPCSILEINI----E 238
+ NV++ G + + +V K + + I +N+
Sbjct: 144 LLEL----RPAKNVLIDG-----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 239 PFNFAKM---LYSPFNSCFSSQTHS---------QLKQYLPIIRDSPVYP---VITD--Q 281
P +M L + ++S++ ++ L + S Y ++ Q
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 282 NGVVLSLPPIINS--HHSRISVNTRNIFIECTATDLTKAKIVLDTL---------VTMFS 330
N N+ +I + TR + + T I LD ++
Sbjct: 255 N------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 331 QYCEDKYH---VESCEV--LRSDGTSARYPELKVRKE---VVNVKKATKYIGITQGGQSP 382
+Y + + E R + + + VN K T I + P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 383 D------QDVSA-DKD---PLNGLC---FSESTDKVASLLTKMCLQTKILGSGAELSVSI 429
+S P L F V ++ K+ + + E ++SI
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 430 PPTRHDI 436
I
Sbjct: 429 ----PSI 431
Score = 44.5 bits (104), Expect = 7e-05
Identities = 59/349 (16%), Positives = 108/349 (30%), Gaps = 102/349 (29%)
Query: 9 QLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPA-VHIGNP--------------K 53
+ D T +L + L + +D+P V NP
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLK-----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 54 TLEF-------QIART------TLVPGLLKT----LAA-NKKMPLPLKLFEI--SDIVYK 93
T + ++ L P + L+ +P L + D++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 94 DATAEVGARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCARNQRNLVAV 153
D V ++ +LV K P E + ++L ++ + R++V
Sbjct: 403 DVMVVVNKLHKYSLV----EKQP-KESTISIPSIYLELKVKLENEYALH-----RSIVD- 451
Query: 154 YYNKSPGFEIIHGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTM 213
+YN F+ + LD Y F+ S IG
Sbjct: 452 HYNIPKTFDSDDLIPP--------YLD---QY---------FY-----------SHIG-- 478
Query: 214 GVLHPEVLGKFELTLPCSILEINIEPFNF--AKMLYSPFNSCFSSQ---THSQLKQYLPI 268
H + + E ++ ++ F F K+ + S T QLK Y P
Sbjct: 479 --HHLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 269 IRDS-PVYP-VITDQNGVVLSLPP-IINSHHS---RISVNTRN--IFIE 309
I D+ P Y ++ + + +I S ++ RI++ + IF E
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 36.4 bits (83), Expect = 0.025
Identities = 33/204 (16%), Positives = 75/204 (36%), Gaps = 61/204 (29%)
Query: 20 TEVLTFALCSRD---------DVSVKLRQKMEDIPAVHIGNPKTL--EFQIARTTLVPGL 68
++ ++L + + ++L+ K+E+ A+H +++ + I
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----RSIVDHYNI--------- 455
Query: 69 LKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIHGLLD-R 127
KT ++ +P L + S I + E + + F ++ LD R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIE------------HPERMTLFRMV--FLDFR 501
Query: 128 VMQLLQIPLDKTEGYCARNQRNLVAV--YYNK-----SPGFE-IIHGLLDRVMQ------ 173
++ +I D T + + N + +Y P +E +++ +LD + +
Sbjct: 502 FLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 174 ------LLQIPL-DKTEGYCIQAA 190
LL+I L + E +A
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAH 584
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot,
ATP-binding, ligase, nucleoti binding, tRNA processing;
2.20A {Geobacillus kaustophilus}
Length = 142
Score = 30.2 bits (68), Expect = 0.68
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 259 HSQLKQYL------PIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFI 308
+LK+ + RD +P++ D +G +L +P + S + +
Sbjct: 73 TKKLKEIFIEAKIPRMERDR--WPIVEDADGRILWVPGLKKSAFEAQNRGQARYIL 126
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A
{Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB:
1pvy_A* 1pvw_A
Length = 227
Score = 30.7 bits (70), Expect = 0.76
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 342 CEVLRSDGTSARYPELKVRKEVVNVKKAT 370
CE++ DG + E K E N+ +
Sbjct: 184 CEMMGDDGNAMSKNETKRYAEKHNLIYLS 212
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
riboflavine biosynthesis, skeletal rearrangement,
antimicrobial target; 1.40A {Escherichia coli} SCOP:
d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Length = 217
Score = 30.2 bits (69), Expect = 1.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 342 CEVLRSDGTSARYPELKV 359
CE+ DGT AR PE
Sbjct: 173 CELTNDDGTMARAPECIE 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.0
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 4/19 (21%)
Query: 260 SQLKQYLPIIRDS-PVYPV 277
+ LK Y DS P +
Sbjct: 27 ASLKLYAD---DSAPALAI 42
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 262 LKQYL------PIIRDSPVYPVITDQNGVVLSLPPIINSHHSRISVNTRNIFI 308
LK+ + RD +P++ D +G +L +P + S + +
Sbjct: 406 LKEIFIEAKIPRMERDR--WPIVEDADGRILWVPGLKKSAFEAQNRGQARYIL 456
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 27.9 bits (62), Expect = 7.5
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 2 PLNKLSDQLRGDIAQAGFTEVLTFALCSRD------DVSVKLRQKMEDIPAVHIGNPKTL 55
L KL ++ GF E+ + L + + K + L
Sbjct: 78 YLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIF----RVDKNFCL 133
Query: 56 EFQIARTTLVPGLLKTLAANKK-MPLPLKLFEI 87
R L P L L + +P P+K+FEI
Sbjct: 134 -----RPMLTPNLYNYLRKLDRALPDPIKIFEI 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.402
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,164,469
Number of extensions: 423638
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 32
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)