RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15928
         (485 letters)



>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
           subunit, PheT, central domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 207

 Score = 73.0 bits (178), Expect = 2e-15
 Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 54/235 (22%)

Query: 5   KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEDIPAVHIGNPKTLEFQIARTTL 64
           +   +LR  ++  GF EV T++    +D     R+   D P + + NP   E    RT L
Sbjct: 19  RKEQRLREVLSGLGFQEVYTYSFMDPED----ARRFRLDPPRLLLLNPLAPEKAALRTHL 74

Query: 65  VPGLLKTLAANKKMPLP--LKLFEISDIVYKDATAEVGARNQRNLVAVYYNKSPGFEIIH 122
            PGL++ L  N  +  P    LFE+  +  +                             
Sbjct: 75  FPGLVRVLKENLDLDRPERALLFEVGRVFRERE--------------------------- 107

Query: 123 GLLDRVMQLLQIPLDKTEGYCARNQRNLVAVYYNKSPGFEIIHGLLDRVMQLLQIPLDKT 182
                         +         +   +     +  G+ ++ G L+ +   L +     
Sbjct: 108 --------------ETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA---- 149

Query: 183 EGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKFELTLPCSILEINI 237
             + ++A       P     V++ G ++G +G LHPE+  + EL  P  + E+ +
Sbjct: 150 --FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRL 201


>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
           {Thermus thermophilus [TaxId: 274]}
          Length = 75

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 382 PDQDVSADKDPLNGLC-FSESTDKVASLLTKMCLQTKILGSGAELSVSIPPTRHDIIHTC 440
           P + +    +  N L   S    +  ++L ++  + +  G    ++   P  R D+    
Sbjct: 1   PPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTP--PSHRLDLRLEE 58

Query: 441 DIYEDIAIAYGYNNIP 456
           D+ E++A   GY  IP
Sbjct: 59  DLVEEVARIQGYETIP 74


>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 279

 Score = 32.9 bits (75), Expect = 0.067
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)

Query: 57  FQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAEVGARNQRNLVA---VYYN 113
           +   R   +P      A          +  +   +Y +  A +    QRN VA   +Y  
Sbjct: 131 WCHCRQVYLPMSY-CYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 189

Query: 114 KSPGFEIIHGLLDRVMQ-----LLQIPLDKTEGYCARNQR--------------NLVAVY 154
            S    +++ LL+         L Q  + K   +   + R              N++  +
Sbjct: 190 HSWLLRVVYALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRW 249

Query: 155 YNKSPGFEIIHGLLDRV 171
           Y   P        + R+
Sbjct: 250 YVDGPASTAFQEHVSRI 266


>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
           synthase, DHBP synthase, RibB {Archaeon
           Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 219

 Score = 28.0 bits (62), Expect = 2.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 342 CEVLRSDGTSARYPELK 358
           CE++  DG +    E K
Sbjct: 183 CEMMGDDGNAMSKNETK 199


>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens
           [TaxId: 1502]}
          Length = 471

 Score = 27.5 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 296 HSRISVNTRNIFIECTATDLTKAKIVLD 323
           +S  +V+ +  +IE T+T+ +K KI LD
Sbjct: 341 NSVAAVHNKTDYIETTSTEYSKGKINLD 368


>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
           domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 277

 Score = 26.2 bits (57), Expect = 7.8
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 165 HGLLDRVMQLLQIPLDKTEGYCIQAADNATFFPQRCANVMLRGSKIGTMGVLHPEVLGKF 224
           +G++ R ++   I +  T    +     A        +V    + IGT   L PE     
Sbjct: 130 NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGD 189

Query: 225 ELTLPCSILEINIEPFNFAKMLYSPFNSCFSSQTHSQLKQYLPIIRDSPVYP 276
            +     +       ++   +LY            S +      +R+ P+ P
Sbjct: 190 SVDARSDV-------YSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPP 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,721,885
Number of extensions: 78950
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 7
Length of query: 485
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,185,626
Effective search space: 469507896
Effective search space used: 469507896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)