BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15933
         (59 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9JLU4|SHAN3_RAT SH3 and multiple ankyrin repeat domains protein 3 OS=Rattus
           norvegicus GN=Shank3 PE=1 SV=2
          Length = 1815

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 18  FKEGFNYGLFYPPANGKAGKFLDEERRLGDYPFN--GPVGYLEF 59
            ++  NYGLF PP+ G+AGKFLDEER L DYP N   P+ YLEF
Sbjct: 122 LQDALNYGLFQPPSRGRAGKFLDEERLLQDYPPNLDTPLPYLEF 165


>sp|Q4ACU6|SHAN3_MOUSE SH3 and multiple ankyrin repeat domains protein 3 OS=Mus musculus
           GN=Shank3 PE=1 SV=2
          Length = 1805

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 18  FKEGFNYGLFYPPANGKAGKFLDEERRLGDYPFN--GPVGYLEF 59
            ++  NYGLF PP+ G+AGKFLDEER L DYP N   P+ YLEF
Sbjct: 122 LQDALNYGLFQPPSRGRAGKFLDEERLLQDYPPNLDTPLPYLEF 165


>sp|Q9BYB0|SHAN3_HUMAN SH3 and multiple ankyrin repeat domains protein 3 OS=Homo sapiens
          GN=SHANK3 PE=1 SV=2
          Length = 1741

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 18 FKEGFNYGLFYPPANGKAGKFLDEERRLGDYPFN--GPVGYLEF 59
           ++  NYGLF PP+ G+AGKFLDEER L +YP N   P+ YLEF
Sbjct: 47 LQDALNYGLFQPPSRGRAGKFLDEERLLQEYPPNLDTPLPYLEF 90


>sp|D3YZU1|SHAN1_MOUSE SH3 and multiple ankyrin repeat domains protein 1 OS=Mus musculus
           GN=Shank1 PE=2 SV=1
          Length = 2167

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 18  FKEGFNYGLFYPPANGKAGKFLDEERRLGDYP--FNGPVGYLEF 59
            ++  NYGLF P  +G+   FL+EER L +YP  F   V YLEF
Sbjct: 111 LQDVLNYGLFQPATSGRDANFLEEERLLREYPQSFEKGVPYLEF 154


>sp|Q9WV48|SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1 OS=Rattus
           norvegicus GN=Shank1 PE=1 SV=1
          Length = 2167

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 18  FKEGFNYGLFYPPANGKAGKFLDEERRLGDYP--FNGPVGYLEF 59
            ++  NYGLF P  +G+   FL+EER L +YP  F   V YLEF
Sbjct: 111 LQDVLNYGLFQPATSGRDANFLEEERLLREYPQSFEKGVPYLEF 154


>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens
           GN=SHANK1 PE=1 SV=2
          Length = 2161

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 18  FKEGFNYGLFYPPANGKAGKFLDEERRLGDYP--FNGPVGYLEF 59
            ++  NYGLF P  +G+   FL+EER L +YP  F   V YLEF
Sbjct: 111 LQDVLNYGLFQPATSGRDANFLEEERLLREYPQSFEKGVPYLEF 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.146    0.482 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,901,048
Number of Sequences: 539616
Number of extensions: 993293
Number of successful extensions: 1680
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 6
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)