Query psy15933
Match_columns 59
No_of_seqs 33 out of 35
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 16:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivf_A Talin-1; FERM domain, c 95.9 0.0028 9.5E-08 43.8 1.8 34 18-51 41-74 (371)
2 4b6w_A Tubulin-specific chaper 47.2 7.3 0.00025 22.3 1.1 18 34-51 56-73 (86)
3 1wgh_A Ubiquitin-like 3, HCG-1 42.9 6.5 0.00022 24.2 0.5 16 35-50 70-85 (116)
4 3tj5_B Metavinculin, SCA-famil 42.4 3.9 0.00013 21.0 -0.5 14 11-24 10-23 (27)
5 1v6e_A Cytoskeleton-associated 40.8 15 0.00051 20.7 1.8 19 33-51 55-77 (95)
6 1se9_A Ubiquitin family; ubiqu 40.1 6.2 0.00021 25.0 0.1 17 35-51 70-86 (126)
7 1lpl_A Hypothetical 25.4 kDa p 38.7 6.7 0.00023 23.8 0.1 21 22-42 71-91 (95)
8 2gow_A HCG-1 protein, ubiquiti 36.1 8.4 0.00029 23.9 0.2 17 35-51 71-87 (125)
9 4fbj_B NEDD8; effector-HOST ta 31.2 21 0.00072 19.7 1.3 17 35-51 46-62 (88)
10 2faz_A Ubiquitin-like containi 29.2 25 0.00084 18.4 1.3 17 35-51 50-66 (78)
11 3phx_B Ubiquitin-like protein 29.1 18 0.00061 19.1 0.8 17 35-51 50-66 (79)
12 2wyq_A HHR23A, UV excision rep 27.8 20 0.00067 19.0 0.8 17 35-51 54-70 (85)
13 2kj6_A Tubulin folding cofacto 27.6 15 0.00051 21.6 0.3 19 33-51 63-85 (97)
14 2kd0_A LRR repeats and ubiquit 27.1 27 0.00094 19.3 1.3 17 35-51 57-73 (85)
15 2bps_A YUKD protein; ubiquitin 26.0 19 0.00064 21.3 0.5 42 9-53 28-75 (81)
16 1ndd_A NEDD8, protein (ubiquit 26.0 22 0.00075 18.0 0.8 17 35-51 46-62 (76)
17 3m62_B UV excision repair prot 25.9 29 0.00099 20.0 1.3 16 35-50 47-62 (106)
18 2r2o_A Plexin-B1; effector dom 25.5 15 0.00051 24.2 0.0 11 37-47 8-18 (138)
19 2bwf_A Ubiquitin-like protein 25.2 23 0.00078 18.2 0.7 17 35-51 49-65 (77)
20 3dbh_I NEDD8; cell cycle, acti 24.8 24 0.00081 18.7 0.8 17 35-51 58-74 (88)
21 3n3k_B Ubiquitin; hydrolase, p 24.5 32 0.0011 18.0 1.3 17 35-51 49-65 (85)
22 2dzi_A Ubiquitin-like protein 23.8 25 0.00086 18.2 0.8 17 35-51 53-69 (81)
23 1wia_A Hypothetical ubiquitin- 23.7 32 0.0011 19.0 1.2 16 35-50 50-66 (95)
24 4dwf_A HLA-B-associated transc 23.4 18 0.00061 19.6 0.1 16 35-50 51-66 (90)
25 4eew_A Large proline-rich prot 23.2 18 0.00062 19.5 0.1 17 35-51 63-79 (88)
26 1we6_A Splicing factor, putati 22.8 47 0.0016 19.0 1.8 17 35-51 77-93 (111)
27 3a9j_A Ubiquitin; protein comp 22.5 28 0.00096 17.6 0.7 16 36-51 47-62 (76)
28 3m63_B Ubiquitin domain-contai 22.4 37 0.0013 19.5 1.3 17 35-51 73-89 (101)
29 3v6c_B Ubiquitin; structural g 22.1 28 0.00096 19.0 0.7 17 35-51 63-79 (91)
30 2dzj_A Synaptic glycoprotein S 22.0 40 0.0014 19.1 1.4 17 35-51 62-78 (88)
31 1uel_A HHR23B, UV excision rep 21.9 29 0.00098 19.4 0.8 16 35-50 49-64 (95)
No 1
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.94 E-value=0.0028 Score=43.76 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=31.5
Q ss_pred ccccccceeecCCCCCCCCCccchhcccCCCCCC
Q psy15933 18 FKEGFNYGLFYPPANGKAGKFLDEERRLGDYPFN 51 (59)
Q Consensus 18 L~d~lNYGLf~Pp~~Gr~GKFLdEERlLreYP~~ 51 (59)
..|.-+||||.|..+++.|++|+..|.|..|+..
T Consensus 41 ~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~ 74 (371)
T 3ivf_A 41 AGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLR 74 (371)
T ss_dssp SSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCC
T ss_pred CCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCC
Confidence 5678999999999999999999999999999973
No 2
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=47.17 E-value=7.3 Score=22.33 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCCccchhcccCCCCCC
Q psy15933 34 KAGKFLDEERRLGDYPFN 51 (59)
Q Consensus 34 r~GKFLdEERlLreYP~~ 51 (59)
.+||-|+.+|.|.+|...
T Consensus 56 ~~g~~l~d~~tL~~Y~i~ 73 (86)
T 4b6w_A 56 TIEKNMANDKQLGYYQCR 73 (86)
T ss_dssp EEESSCCTTSBGGGGTCC
T ss_pred ceeeEcCCCCCHHHCCCC
Confidence 468999999999999974
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.90 E-value=6.5 Score=24.24 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=14.8
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
+||.|+.++.|.+|-.
T Consensus 70 ~GK~LeD~~TL~~y~I 85 (116)
T 1wgh_A 70 QGRFLHGNVTLGALKL 85 (116)
T ss_dssp TTEEECSSCBTTTTTC
T ss_pred CCcCCCCCCcHHHcCC
Confidence 7999999999999975
No 4
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=42.35 E-value=3.9 Score=21.03 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=12.1
Q ss_pred hhhhhhhccccccc
Q psy15933 11 KTYWFTEFKEGFNY 24 (59)
Q Consensus 11 ~~~~~~~L~d~lNY 24 (59)
.+-||+|.+|.+||
T Consensus 10 A~~LS~sMQdLLn~ 23 (27)
T 3tj5_B 10 ATALSGSMQYLLNY 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36799999999997
No 5
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.83 E-value=15 Score=20.72 Aligned_cols=19 Identities=42% Similarity=0.796 Sum_probs=14.6
Q ss_pred CCCCCc----cchhcccCCCCCC
Q psy15933 33 GKAGKF----LDEERRLGDYPFN 51 (59)
Q Consensus 33 Gr~GKF----LdEERlLreYP~~ 51 (59)
|+.||. ++.++.|.+|...
T Consensus 55 ~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 55 GADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CSSSCEEEECCCSSSBTTSSSCC
T ss_pred CCCCccccccCCCcCCHhHCCCC
Confidence 445776 5889999999863
No 6
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=40.12 E-value=6.2 Score=25.00 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.4
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
+||.|+.++.|.||-..
T Consensus 70 ~GK~LeD~~TLsdy~I~ 86 (126)
T 1se9_A 70 AGKVLENSKTVKDYRSP 86 (126)
T ss_dssp TTEECCTTSBGGGGSCC
T ss_pred CCeECcCCCcHHHcCCC
Confidence 79999999999999864
No 7
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=38.75 E-value=6.7 Score=23.78 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=17.5
Q ss_pred ccceeecCCCCCCCCCccchh
Q psy15933 22 FNYGLFYPPANGKAGKFLDEE 42 (59)
Q Consensus 22 lNYGLf~Pp~~Gr~GKFLdEE 42 (59)
-|||+|.+|+.=+.|-|-+++
T Consensus 71 p~~G~Fvr~~~v~~gdfp~~d 91 (95)
T 1lpl_A 71 PKYGGFVRPVDVKVGDFPELS 91 (95)
T ss_dssp TTSEEEECGGGEEESCCCCCC
T ss_pred CCEEEEEcHHHceECCCCCCC
Confidence 589999999988888887766
No 8
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=36.14 E-value=8.4 Score=23.94 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=15.2
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
+||.|+.++.|.+|-..
T Consensus 71 ~GK~LeD~~TL~~y~I~ 87 (125)
T 2gow_A 71 QGRFLHGNVTLGALKLP 87 (125)
T ss_dssp SSSEEESSCBTGGGCCC
T ss_pred CCcCCCCCCcHHHcCCC
Confidence 79999999999999753
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=31.21 E-value=21 Score=19.66 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.8
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 46 ~Gk~L~D~~tL~~~~i~ 62 (88)
T 4fbj_B 46 SGKQMNDEKTAADYKIL 62 (88)
T ss_dssp TTEECCTTSBTTTTTCC
T ss_pred CCeECCCCCcHHHcCCC
Confidence 57899999999999863
No 10
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=29.22 E-value=25 Score=18.37 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.3
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 50 ~g~~L~d~~tL~~~~i~ 66 (78)
T 2faz_A 50 RGKQMEDGHTLFDYEVR 66 (78)
T ss_dssp TTEECCTTCBTTTTTCC
T ss_pred CCEECCCCCCHHHcCCC
Confidence 46889999999999863
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=29.10 E-value=18 Score=19.07 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=14.7
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 50 ~G~~L~d~~tL~~~~i~ 66 (79)
T 3phx_B 50 EGKPLEDQLPLGEYGLK 66 (79)
T ss_dssp TTEECCTTSBGGGGTCC
T ss_pred CCEECCCCCcHHHCCCC
Confidence 57899999999999863
No 12
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=27.82 E-value=20 Score=19.01 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.3
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 54 ~Gk~L~D~~tL~~~~i~ 70 (85)
T 2wyq_A 54 AGKILSDDVPIRDYRID 70 (85)
T ss_dssp TTEECCTTSBGGGGCCC
T ss_pred CCEECcCCCCHHHcCCC
Confidence 37889999999999863
No 13
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=27.63 E-value=15 Score=21.59 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=14.6
Q ss_pred CCCCCc----cchhcccCCCCCC
Q psy15933 33 GKAGKF----LDEERRLGDYPFN 51 (59)
Q Consensus 33 Gr~GKF----LdEERlLreYP~~ 51 (59)
|+.||. ++++|.|.+|...
T Consensus 63 g~~g~~~~~L~~D~~tL~~Y~I~ 85 (97)
T 2kj6_A 63 DDSGSKVAVLSDDSRPLGFFSPF 85 (97)
T ss_dssp CSSSCBCCCSSGGGSCHHHHCCC
T ss_pred cCCCcccceecCCcCCHHHCCCC
Confidence 445665 5999999999974
No 14
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=27.07 E-value=27 Score=19.26 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=14.5
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 57 ~Gk~L~D~~tL~~~gi~ 73 (85)
T 2kd0_A 57 KGKVLVETSTLKQSDVG 73 (85)
T ss_dssp TTEECCTTCBTTTTTCC
T ss_pred CCeECCCcCCHHHCCCC
Confidence 37899999999999864
No 15
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=26.02 E-value=19 Score=21.27 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=27.8
Q ss_pred hhhhhhhhhccccccceeecCCCCCC------CCCccchhcccCCCCCCCC
Q psy15933 9 TFKTYWFTEFKEGFNYGLFYPPANGK------AGKFLDEERRLGDYPFNGP 53 (59)
Q Consensus 9 ~~~~~~~~~L~d~lNYGLf~Pp~~Gr------~GKFLdEERlLreYP~~~~ 53 (59)
|+|.++ +.++++++-. .|+.+|. .+.+|.+.+.|.|||...+
T Consensus 28 tvK~Li-~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnG 75 (81)
T 2bps_A 28 PVKKVI-DIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNG 75 (81)
T ss_dssp BTTHHH-HHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTT
T ss_pred hHHHHH-HHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCC
Confidence 344433 3566665555 5555542 5789999999999998643
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=25.95 E-value=22 Score=18.02 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.2
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 46 ~g~~L~d~~tL~~~~i~ 62 (76)
T 1ndd_A 46 SGKQMNDEKTAADYKIL 62 (76)
T ss_dssp TTEECCTTSBGGGGTCC
T ss_pred CCEECCCCCcHHHcCCC
Confidence 37889999999999863
No 17
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.86 E-value=29 Score=19.99 Aligned_cols=16 Identities=19% Similarity=0.545 Sum_probs=14.3
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
.||-|+.++.|.+|..
T Consensus 47 ~Gk~L~D~~tL~~~~i 62 (106)
T 3m62_B 47 SGKVLQDSKTVSECGL 62 (106)
T ss_dssp TTEECCTTSBTTTTTC
T ss_pred CCEECCCcCCHHHcCC
Confidence 4789999999999985
No 18
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=25.46 E-value=15 Score=24.22 Aligned_cols=11 Identities=9% Similarity=-0.173 Sum_probs=0.0
Q ss_pred CccchhcccCC
Q psy15933 37 KFLDEERRLGD 47 (59)
Q Consensus 37 KFLdEERlLre 47 (59)
.-|.||+|||+
T Consensus 8 ~~lsEdkLLRq 18 (138)
T 2r2o_A 8 SSGRENLYFQG 18 (138)
T ss_dssp -----------
T ss_pred cccChhHhhcc
Confidence 34899999996
No 19
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=25.22 E-value=23 Score=18.23 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=14.2
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 49 ~gk~L~d~~tL~~~~i~ 65 (77)
T 2bwf_A 49 SGKILKDDQTVESYHIQ 65 (77)
T ss_dssp TTEECCTTSBTGGGTCC
T ss_pred CCeEcCCCCCHHHcCCC
Confidence 36889999999999864
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=24.79 E-value=24 Score=18.72 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.6
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 58 ~G~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 58 SGKQMNDEKTAADYKIL 74 (88)
T ss_dssp TTEECCTTSBGGGGTCC
T ss_pred CCeECCCCCcHHHcCCC
Confidence 57889999999999863
No 21
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.53 E-value=32 Score=17.98 Aligned_cols=17 Identities=47% Similarity=0.802 Sum_probs=14.4
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 49 ~g~~L~d~~tL~~~~i~ 65 (85)
T 3n3k_B 49 AGKQLEDGRTLSDYNIH 65 (85)
T ss_dssp TBEECCTTCBTTTTTCC
T ss_pred CCeECCCCCCHHHCCCC
Confidence 46889999999999863
No 22
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.84 E-value=25 Score=18.23 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=14.3
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 53 ~gk~L~d~~tL~~~~i~ 69 (81)
T 2dzi_A 53 KGKALADGKRLSDYSIG 69 (81)
T ss_dssp TTEECCTTSBGGGGTCC
T ss_pred CCeECCCCCcHHHcCCC
Confidence 37889999999999863
No 23
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.66 E-value=32 Score=18.95 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=13.7
Q ss_pred CCCccchh-cccCCCCC
Q psy15933 35 AGKFLDEE-RRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEE-RlLreYP~ 50 (59)
.||-|+.+ +.|.||..
T Consensus 50 ~Gk~L~D~~~tL~~y~i 66 (95)
T 1wia_A 50 QGRLLQDPARTLSSLNI 66 (95)
T ss_dssp TTEECCCSSCBTTTTTC
T ss_pred CCEEccCCcCCHHHcCC
Confidence 47899888 99999976
No 24
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=23.43 E-value=18 Score=19.60 Aligned_cols=16 Identities=25% Similarity=0.783 Sum_probs=14.3
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
.||-|+.++.|.+|..
T Consensus 51 ~Gk~L~d~~tL~~~~i 66 (90)
T 4dwf_A 51 QGRVLQDDKKLQEYNV 66 (90)
T ss_dssp TTEECCTTSBGGGGTC
T ss_pred CCeECCCCCCHHHcCC
Confidence 5789999999999986
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=23.22 E-value=18 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.745 Sum_probs=14.7
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|..+
T Consensus 63 ~Gk~L~D~~tL~~~~i~ 79 (88)
T 4eew_A 63 QGRVLQDDKKLQEYNVG 79 (88)
T ss_dssp TTEECCTTSBGGGGTCT
T ss_pred CCEECCCCCcHHHcCCC
Confidence 57899999999999763
No 26
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=22.78 E-value=47 Score=19.02 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.6
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||.|+.++.|.+|...
T Consensus 77 ~Gk~L~D~~tL~~y~I~ 93 (111)
T 1we6_A 77 KAGFLKDNMSLAHYNVG 93 (111)
T ss_dssp SSSBCCTTSBTTTTTCS
T ss_pred CCEECCCCCcHHHCCCC
Confidence 47899999999999863
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=22.45 E-value=28 Score=17.60 Aligned_cols=16 Identities=44% Similarity=0.792 Sum_probs=13.7
Q ss_pred CCccchhcccCCCCCC
Q psy15933 36 GKFLDEERRLGDYPFN 51 (59)
Q Consensus 36 GKFLdEERlLreYP~~ 51 (59)
||-|+.++.|.+|...
T Consensus 47 g~~L~d~~tL~~~~i~ 62 (76)
T 3a9j_A 47 GKQLEDGRTLSDYNIQ 62 (76)
T ss_dssp TEECCTTCBTGGGTCC
T ss_pred CeECCCCCcHHHcCCC
Confidence 6789999999999863
No 28
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=22.43 E-value=37 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=14.8
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 73 ~Gk~L~D~~tL~~~gI~ 89 (101)
T 3m63_B 73 SGKILKDDQTVESYHIQ 89 (101)
T ss_dssp TTEECCTTSBTTTTTCC
T ss_pred CCEECCCcCcHHHCCCC
Confidence 57999999999999864
No 29
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=22.12 E-value=28 Score=19.03 Aligned_cols=17 Identities=47% Similarity=0.792 Sum_probs=14.6
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 63 ~Gk~L~D~~tL~~~gi~ 79 (91)
T 3v6c_B 63 AGKQLEDGRTLSDYNIQ 79 (91)
T ss_dssp TTEECCTTCBTGGGTCC
T ss_pred CCeECCCcCcHHHCCCC
Confidence 47889999999999864
No 30
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.02 E-value=40 Score=19.05 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.7
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.+|...
T Consensus 62 ~Gk~L~D~~tL~~y~i~ 78 (88)
T 2dzj_A 62 KGKSLKDEDVLQKLPVG 78 (88)
T ss_dssp TSCCCCTTCBTTTSSCC
T ss_pred CCcCcCCCCCHHHcCCC
Confidence 48999999999999863
No 31
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.89 E-value=29 Score=19.36 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=13.9
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
.||-|+.++.|.+|..
T Consensus 49 ~Gk~L~D~~tL~~ygI 64 (95)
T 1uel_A 49 AGKILNDDTALKEYKI 64 (95)
T ss_dssp TTEECCTTSBGGGGTC
T ss_pred CCEECCCcCcHHHCCC
Confidence 4788999999999986
Done!