Query psy15933
Match_columns 59
No_of_seqs 33 out of 35
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 16:49:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15933.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15933hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya4 d.15.1.1 (A:1-77) Ubiq 42.7 3.8 0.00028 21.3 0.8 16 35-50 51-66 (77)
2 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo 40.6 4.1 0.0003 20.9 0.7 17 35-51 46-62 (73)
3 d1ttna1 d.15.1.1 (A:21-100) De 33.0 2.8 0.00021 22.0 -0.8 16 35-50 49-64 (80)
4 d1uela_ d.15.1.1 (A:) Ubiquiti 32.8 4.5 0.00033 21.7 0.1 16 35-50 49-64 (95)
5 d2faza1 d.15.1.1 (A:1-76) Ubiq 32.4 9.2 0.00067 20.0 1.3 17 35-51 48-64 (76)
6 d1ghca_ a.4.5.13 (A:) Histone 29.8 10 0.00075 20.4 1.3 30 9-38 41-71 (75)
7 d1we6a_ d.15.1.1 (A:) Splicing 29.8 13 0.00096 21.0 1.8 17 35-51 77-93 (111)
8 d1z2ma1 d.15.1.1 (A:3-78) Inte 27.7 10 0.00075 19.6 1.0 17 35-51 48-64 (76)
9 d1se9a_ d.15.1.1 (A:) Hypothet 27.5 6.3 0.00046 22.7 0.1 17 35-51 61-77 (101)
10 d2zeqa1 d.15.1.1 (A:1-78) Ubiq 26.9 11 0.00077 19.7 1.0 17 35-51 48-64 (78)
11 d1m94a_ d.15.1.1 (A:) Ubiquiti 24.9 6 0.00043 20.5 -0.4 17 35-51 47-63 (73)
12 d1z2ma2 d.15.1.1 (A:79-154) In 23.1 12 0.0009 18.9 0.8 17 35-51 49-65 (76)
13 d1a6qa1 a.159.1.1 (A:297-368) 22.8 12 0.00088 20.8 0.7 27 5-38 33-59 (72)
14 d1wgda_ d.15.1.1 (A:) Homocyst 22.0 4 0.00029 22.4 -1.5 15 35-49 57-71 (93)
15 d1dl5a2 d.197.1.1 (A:214-317) 21.7 6.1 0.00045 23.8 -0.8 11 42-52 7-17 (104)
16 d1gd6a_ d.2.1.2 (A:) Lysozyme 21.7 8.2 0.00059 22.9 -0.2 9 21-29 47-55 (119)
17 d2nwdx1 d.2.1.2 (X:1-130) Lyso 21.6 8.2 0.0006 23.1 -0.2 10 20-29 50-59 (130)
18 d1wx9a1 d.15.1.1 (A:8-80) Larg 20.9 4.4 0.00032 21.0 -1.4 18 35-52 46-63 (73)
19 d1hfxa_ d.2.1.2 (A:) alpha-Lac 20.5 7.1 0.00052 23.2 -0.7 11 19-29 45-55 (123)
20 d1lmqa_ d.2.1.2 (A:) Lysozyme 20.3 9.6 0.0007 23.0 -0.1 13 19-31 48-60 (129)
No 1
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.72 E-value=3.8 Score=21.28 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=14.6
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
+||-|+.++.|.+|-.
T Consensus 51 ~Gk~L~D~~tL~~y~I 66 (77)
T d1oqya4 51 AGKILSDDVPIRDYRI 66 (77)
T ss_dssp SSSEECSSSBTTTTCC
T ss_pred CCcCccCCCcHHHcCC
Confidence 6899999999999975
No 2
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.58 E-value=4.1 Score=20.87 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=15.0
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
+||.|+.++.|.||-..
T Consensus 46 ~Gk~L~d~~tL~~y~I~ 62 (73)
T d1bt0a_ 46 AGKQLADDKTAKDYNIE 62 (73)
T ss_dssp TTEECCTTSBTGGGTCC
T ss_pred CCeEcCCCCcHHHcCCC
Confidence 68999999999999863
No 3
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.00 E-value=2.8 Score=22.04 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=14.7
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
.||.|+.++.|.||-.
T Consensus 49 ~Gk~L~d~~tL~~y~I 64 (80)
T d1ttna1 49 SGRPLTDKMKFEELKI 64 (80)
T ss_dssp TTEECCTTSHHHHCCC
T ss_pred CceEcCCCCcHHHcCC
Confidence 6899999999999986
No 4
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.80 E-value=4.5 Score=21.68 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=14.6
Q ss_pred CCCccchhcccCCCCC
Q psy15933 35 AGKFLDEERRLGDYPF 50 (59)
Q Consensus 35 ~GKFLdEERlLreYP~ 50 (59)
.||.|+.++.|.||-.
T Consensus 49 ~Gk~L~d~~tL~~y~I 64 (95)
T d1uela_ 49 AGKILNDDTALKEYKI 64 (95)
T ss_dssp TTEECCTTSBGGGGTC
T ss_pred CCeEccCCCcHHHcCC
Confidence 6999999999999975
No 5
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.36 E-value=9.2 Score=20.02 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=15.0
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+.++.|.||...
T Consensus 48 ~Gk~L~D~~tL~~y~I~ 64 (76)
T d2faza1 48 RGKQMEDGHTLFDYEVR 64 (76)
T ss_dssp TTEECCTTCBTTTTTCC
T ss_pred eeEeccCCCcHHHcCCC
Confidence 68999999999999863
No 6
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=29.80 E-value=10 Score=20.35 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=25.1
Q ss_pred hhhhhhhhhccccccce-eecCCCCCCCCCc
Q psy15933 9 TFKTYWFTEFKEGFNYG-LFYPPANGKAGKF 38 (59)
Q Consensus 9 ~~~~~~~~~L~d~lNYG-Lf~Pp~~Gr~GKF 38 (59)
.+++.+.+.|+-...-| |-|+-+.|..|.|
T Consensus 41 ~~~~~l~~aLk~~v~~G~l~q~kG~GasGsf 71 (75)
T d1ghca_ 41 KNNSRIKLGLKSLVSKGTLVQTKGTGASGSF 71 (75)
T ss_dssp SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCC
T ss_pred chHHHHHHHHHHHHhcCCEEeeccCCcccee
Confidence 46778888898888888 7789899989988
No 7
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.77 E-value=13 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.3
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||+|+-++.|.+|...
T Consensus 77 ~Gk~L~D~~tL~~ynI~ 93 (111)
T d1we6a_ 77 KAGFLKDNMSLAHYNVG 93 (111)
T ss_dssp SSSBCCTTSBTTTTTCS
T ss_pred eeEEccccCCHHHcCCC
Confidence 68999999999999873
No 8
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.67 E-value=10 Score=19.60 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=15.0
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
+||.|+.++.|.+|...
T Consensus 48 ~Gk~L~D~~tL~~y~i~ 64 (76)
T d1z2ma1 48 SGVALQDRVPLASQGLG 64 (76)
T ss_dssp TCCBCCSSSCSGGGTCC
T ss_pred CCeeccCCCcHHHcCCC
Confidence 68999999999999863
No 9
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.54 E-value=6.3 Score=22.68 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=15.4
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||.|+.++.|.||-..
T Consensus 61 ~Gk~L~D~~tL~dy~i~ 77 (101)
T d1se9a_ 61 AGKVLENSKTVKDYRSP 77 (101)
T ss_dssp TTEECCTTSBGGGGSCC
T ss_pred CCeEecCCCCHHHcCCC
Confidence 69999999999999864
No 10
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.89 E-value=11 Score=19.71 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.1
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||.|+.++.|.||-..
T Consensus 48 ~Gk~L~d~~tL~~y~I~ 64 (78)
T d2zeqa1 48 AGKELPNHLTVQNCDLE 64 (78)
T ss_dssp TTEEECTTCBGGGSSCC
T ss_pred eeeEcCCCCCHHHcCCC
Confidence 68999999999999863
No 11
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.87 E-value=6 Score=20.47 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.9
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||.|+.++.|.+|...
T Consensus 47 ~Gk~L~d~~tL~~y~I~ 63 (73)
T d1m94a_ 47 GGSVLKDHISLEDYEVH 63 (73)
T ss_dssp SSCEECTTSBHHHHTCC
T ss_pred EeEEecccCcHHHcCCC
Confidence 68999999999999864
No 12
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.12 E-value=12 Score=18.93 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=14.8
Q ss_pred CCCccchhcccCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFN 51 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~ 51 (59)
.||-|+..+.|.+|-..
T Consensus 49 ~gk~L~d~~tL~~y~I~ 65 (76)
T d1z2ma2 49 EGKPLEDQLPLGEYGLK 65 (76)
T ss_dssp TTEECCTTSBGGGGTCC
T ss_pred CCeECCCCCcHHHcCCC
Confidence 58899999999999863
No 13
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.75 E-value=12 Score=20.77 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=20.4
Q ss_pred cccchhhhhhhhhccccccceeecCCCCCCCCCc
Q psy15933 5 NFNATFKTYWFTEFKEGFNYGLFYPPANGKAGKF 38 (59)
Q Consensus 5 ~~~~~~~~~~~~~L~d~lNYGLf~Pp~~Gr~GKF 38 (59)
.++.-++++-+..+++ +||+.|-+.|-
T Consensus 33 dl~~Vm~~L~~e~Ip~-------LPPGGGL~sK~ 59 (72)
T d1a6qa1 33 DLVHVMRTLASENIPS-------LPPGGELASKR 59 (72)
T ss_dssp CHHHHHHHHHHTTCSS-------CCTTTGGGGGH
T ss_pred hHHHHHHHHHhcCCCC-------CCCCccHHHHH
Confidence 4666777777777766 59999988875
No 14
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.97 E-value=4 Score=22.40 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.7
Q ss_pred CCCccchhcccCCCC
Q psy15933 35 AGKFLDEERRLGDYP 49 (59)
Q Consensus 35 ~GKFLdEERlLreYP 49 (59)
+||.|+.++.|.||=
T Consensus 57 ~Gk~L~D~~~L~d~~ 71 (93)
T d1wgda_ 57 SGKLLLDHQCLRDLL 71 (93)
T ss_dssp TTEECCSSSCHHHHS
T ss_pred CCeEccCCCCHHHhC
Confidence 699999999999993
No 15
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.75 E-value=6.1 Score=23.84 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=8.8
Q ss_pred hcccCCCCCCC
Q psy15933 42 ERRLGDYPFNG 52 (59)
Q Consensus 42 ERlLreYP~~~ 52 (59)
-|+|||+|+.+
T Consensus 7 r~llr~fpf~~ 17 (104)
T d1dl5a2 7 RKLLREFPFNR 17 (104)
T ss_dssp HTTCCCCCEEE
T ss_pred HHHHHcCCcch
Confidence 47999999854
No 16
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=21.69 E-value=8.2 Score=22.86 Aligned_cols=9 Identities=44% Similarity=0.755 Sum_probs=7.3
Q ss_pred cccceeecC
Q psy15933 21 GFNYGLFYP 29 (59)
Q Consensus 21 ~lNYGLf~P 29 (59)
+-+|||||=
T Consensus 47 s~dyGlFQI 55 (119)
T d1gd6a_ 47 SKDYGLFQI 55 (119)
T ss_dssp CEEETTTTE
T ss_pred Ccccceeee
Confidence 568999994
No 17
>d2nwdx1 d.2.1.2 (X:1-130) Lysozyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.63 E-value=8.2 Score=23.12 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=7.6
Q ss_pred ccccceeecC
Q psy15933 20 EGFNYGLFYP 29 (59)
Q Consensus 20 d~lNYGLf~P 29 (59)
..-+|||||=
T Consensus 50 gs~~YGlFQI 59 (130)
T d2nwdx1 50 RSTDYGIFQI 59 (130)
T ss_dssp TEEEETTTTE
T ss_pred Cccccceeee
Confidence 3567999993
No 18
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.92 E-value=4.4 Score=20.96 Aligned_cols=18 Identities=28% Similarity=0.826 Sum_probs=15.3
Q ss_pred CCCccchhcccCCCCCCC
Q psy15933 35 AGKFLDEERRLGDYPFNG 52 (59)
Q Consensus 35 ~GKFLdEERlLreYP~~~ 52 (59)
.||-|+.++.|.||-..+
T Consensus 46 ~Gk~L~d~~tL~dy~i~~ 63 (73)
T d1wx9a1 46 QGRVLQDDKKLQEYNVGG 63 (73)
T ss_dssp TTEECCSSSBHHHHTCTT
T ss_pred CCeEccCCCCHHHhCCCC
Confidence 688999999999998643
No 19
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia porcellus) [TaxId: 10141]}
Probab=20.52 E-value=7.1 Score=23.21 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=8.4
Q ss_pred cccccceeecC
Q psy15933 19 KEGFNYGLFYP 29 (59)
Q Consensus 19 ~d~lNYGLf~P 29 (59)
.+..+|||||=
T Consensus 45 ~~s~~yGlFQI 55 (123)
T d1hfxa_ 45 SDHKEYGLFQI 55 (123)
T ss_dssp TTEEEETTTTE
T ss_pred CCCcccccccc
Confidence 35568999993
No 20
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=20.32 E-value=9.6 Score=23.01 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=9.9
Q ss_pred cccccceeecCCC
Q psy15933 19 KEGFNYGLFYPPA 31 (59)
Q Consensus 19 ~d~lNYGLf~Pp~ 31 (59)
..+.+|||||=.+
T Consensus 48 ~gS~dyGiFQIn~ 60 (129)
T d1lmqa_ 48 DGSTDYGIFQINS 60 (129)
T ss_dssp TSCEEETTTTEET
T ss_pred CCCCCcceeeecc
Confidence 4578999999643
Done!