RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15933
         (59 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 0.49
 Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 8/59 (13%)

Query: 7    NATFKTYWFTEFK-----EGFNYGLFYPPANGKAGK---FLDEERRLGDYPFNGPVGYL 57
            N    T  F   K     E ++  +F    +GK      F +       Y F    G L
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726


>3rpw_A ABC transporter; structural genomics, PSI-biology, protein
           structure initiati midwest center for structural
           genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas
           palustris}
          Length = 365

 Score = 24.7 bits (54), Expect = 1.7
 Identities = 1/26 (3%), Positives = 5/26 (19%)

Query: 26  LFYPPANGKAGKFLDEERRLGDYPFN 51
                 +        ++     +  N
Sbjct: 300 FPVALPSKVVFDAATDKNIARYWANN 325


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.146    0.482 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 995,721
Number of extensions: 44106
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 6
Length of query: 59
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 29
Effective length of database: 5,864,163
Effective search space: 170060727
Effective search space used: 170060727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)