RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15933
         (59 letters)



>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
           coli, RepD [TaxId: 562]}
          Length = 333

 Score = 24.4 bits (51), Expect = 0.87
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 5   NFNATFKTYWFTEFKEGFNYGLFYPPANGKAGKFLDEERRL 45
             +A+    +   +  G   G   P  +      +DEERRL
Sbjct: 249 TLHASKGLEFPYVYMVGMEEGFL-PHQSSIDEDNIDEERRL 288


>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 333

 Score = 24.3 bits (51), Expect = 1.1
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 5   NFNATFKTYWFTEFKEGFNYGLFYPPANGKAGKFLDEERRL 45
             +A     +   F  G   G+F    + +    ++EERRL
Sbjct: 245 TLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRL 285


>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 340

 Score = 23.4 bits (50), Expect = 2.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 39  LDEERRLGDYPFNGPV 54
           ++  R  G++P NGPV
Sbjct: 186 IEFYRAKGEFPLNGPV 201


>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle
           domain {Bacillus anthracis [TaxId: 1392]}
          Length = 287

 Score = 23.0 bits (49), Expect = 2.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 15  FTEFKEGFNYGLFY 28
           F EFK+ F Y +  
Sbjct: 205 FNEFKKNFKYSISS 218


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.146    0.482 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 255,012
Number of extensions: 9298
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)