BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15934
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WV48|SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1 OS=Rattus
norvegicus GN=Shank1 PE=1 SV=1
Length = 2167
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 16 NLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
NLDEKQL LHT++ LK+FLEYV +K+A+L KGLDPN+H ++GE
Sbjct: 165 NLDEKQLAKLHTKTGLKKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGE 214
>sp|D3YZU1|SHAN1_MOUSE SH3 and multiple ankyrin repeat domains protein 1 OS=Mus musculus
GN=Shank1 PE=2 SV=1
Length = 2167
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 16 NLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
NLDEKQL LHT++ LK+FLEYV +K+A+L KGLDPN+H ++GE
Sbjct: 165 NLDEKQLAKLHTKTGLKKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGE 214
>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens
GN=SHANK1 PE=1 SV=2
Length = 2161
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 16 NLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
NLDEKQL LHT++ LK+FLEYV +K+A+L KGLDPN+H ++GE
Sbjct: 165 NLDEKQLAKLHTKTGLKKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGE 214
>sp|Q9JLU4|SHAN3_RAT SH3 and multiple ankyrin repeat domains protein 3 OS=Rattus
norvegicus GN=Shank3 PE=1 SV=2
Length = 1815
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 17 LDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
+D+KQ LHT++NLK+F++YV +K+A+L KGLDPNFH P++GE
Sbjct: 177 IDDKQFAKLHTKANLKKFMDYVQLHSTDKVARLLDKGLDPNFHDPDSGE 225
>sp|Q4ACU6|SHAN3_MOUSE SH3 and multiple ankyrin repeat domains protein 3 OS=Mus musculus
GN=Shank3 PE=1 SV=2
Length = 1805
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 17 LDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
+D+KQ LHT++NLK+F++YV +K+A+L KGLDPNFH P++GE
Sbjct: 177 IDDKQFAKLHTKANLKKFMDYVQLHSTDKVARLLDKGLDPNFHDPDSGE 225
>sp|Q9BYB0|SHAN3_HUMAN SH3 and multiple ankyrin repeat domains protein 3 OS=Homo sapiens
GN=SHANK3 PE=1 SV=2
Length = 1741
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 17 LDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
+D+KQ LHT++NLK+F++YV +K+A+L KGLDPNFH P++GE
Sbjct: 102 IDDKQFAKLHTKANLKKFMDYVQLHSTDKVARLLDKGLDPNFHDPDSGE 150
>sp|A9L9E2|YCF1_LEMMI Putative membrane protein ycf1 OS=Lemna minor GN=ycf1 PE=3 SV=1
Length = 1911
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 8 NTFISLLLNLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGL 54
NT +S N++ Q K L+ RSN K +LE N +Q EK KL + L
Sbjct: 1568 NTNLSPNNNINGNQKKDLNLRSNKKEYLELENQNQQEKKQKLSQRDL 1614
>sp|Q2SRI4|TRUA_MYCCT tRNA pseudouridine synthase A OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=truA PE=3 SV=1
Length = 249
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 17 LDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPET 63
LD+K L ++ L++F+ +N + E I L AK +DPNF+ E
Sbjct: 60 LDQKVLLIIYFTPILEKFINAINKALPEDIRILNAKFVDPNFNIREV 106
>sp|Q3SL45|PYRG_THIDA CTP synthase OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=pyrG PE=3 SV=1
Length = 546
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 16 NLDEKQLKA-LHTRSNLKRFLEYVNNSQVEKIAKLCAKGLD 55
+L E + A +HT+S +K + YV++ Q+EK C +G+D
Sbjct: 306 SLSEAMIHAGMHTKSRVK--IHYVDSEQIEKSGVDCLRGMD 344
>sp|Q92766|RREB1_HUMAN Ras-responsive element-binding protein 1 OS=Homo sapiens GN=RREB1
PE=1 SV=3
Length = 1687
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 16 NLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPETGE 65
+L +K LKA TR ++++ +EYV++S E + CA P+ C GE
Sbjct: 717 HLRKKHLKA--TRKDIEKNIEYVSSSAAELVDAFCA----PDTVCRLCGE 760
>sp|Q6MSQ4|TRUA_MYCMS tRNA pseudouridine synthase A OS=Mycoplasma mycoides subsp.
mycoides SC (strain PG1) GN=truA PE=3 SV=1
Length = 251
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 17 LDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHCPE 62
LD+K L ++ L++F++ +N + I L AK +DPNF+ E
Sbjct: 60 LDQKVLLIIYFTPILEKFIKAINKALPSDIKILDAKFVDPNFNIRE 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,926,698
Number of Sequences: 539616
Number of extensions: 655667
Number of successful extensions: 2335
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2325
Number of HSP's gapped (non-prelim): 12
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)