RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15934
         (70 letters)



>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
          Length = 557

 Score = 28.6 bits (64), Expect = 0.18
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 43  VEKIAKLCAKGLDPNFH 59
           VE+     A G DP+FH
Sbjct: 430 VERFNGFAATGTDPDFH 446


>gnl|CDD|188402 TIGR03887, thiocyan_alph, thiocyanate hydrolase, gamma subunit.
          Members of this family are the gamma subunit of
          thiocyanate hydrolase. This family is closely related
          to the nitrile hydratase, alpha subunit (TIGR01323).
          Length = 200

 Score = 27.5 bits (61), Expect = 0.46
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 23 KALHTRSNLKRFLEYVNNSQVEKIAKLCAKG-LDPNF 58
          K L +  + +RF E+         A+L AK  LDP F
Sbjct: 20 KGLFSAEDHRRFTEWAETLGPLPAARLVAKAWLDPEF 56


>gnl|CDD|215165 PLN02292, PLN02292, ferric-chelate reductase.
          Length = 702

 Score = 26.4 bits (58), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 11/43 (25%)

Query: 28  RSNLKRFLEYVNNSQV-----------EKIAKLCAKGLDPNFH 59
           R NL + L  +  S V           +K+AK+C+ GL  N H
Sbjct: 652 RPNLNKLLVGLKGSSVGVLVCGPKKMRQKVAKICSSGLAENLH 694


>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain.  The
           central domain of Poly(A) polymerase shares structural
           similarity with the allosteric activity domain of
           ribonucleotide reductase R1, which comprises a
           four-helix bundle and a three-stranded mixed beta-
           sheet. Even though the two enzymes bind ATP, the
           ATP-recognition motifs are different.
          Length = 349

 Score = 25.3 bits (56), Expect = 2.3
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 12  SLLLNLDEKQLKALH-TRSNLKRFLEYVNNSQVEKIA----KLCAK 52
           SLL NLDEK +++L+  R      L  V N  V + A    KL AK
Sbjct: 172 SLLRNLDEKSVRSLNGCRVT-DEILRLVPNKDVFRTALRAIKLWAK 216


>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE;
           Provisional.
          Length = 266

 Score = 25.5 bits (56), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 1   MVTSNIANTFISLLLNLDEKQLKALHTRSNLKRFLEYVNNS 41
           +   NIA T ++L LN  + +  A      LKR ++YVN +
Sbjct: 227 LKEGNIAITPLTLNLNALDGERAA--DLEALKRLVDYVNEA 265


>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation,
           ribosomal structure and biogenesis].
          Length = 323

 Score = 25.0 bits (55), Expect = 3.5
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 43  VEKIAKLCAKGLDPNFHCP 61
            +   +L A  +D N  CP
Sbjct: 85  AKIAEELGADIIDLNCGCP 103


>gnl|CDD|132857 cd07218, Pat_iPLA2, Calcium-independent phospholipase A2;
           Classified as Group IVA-1 PLA2.  Calcium-independent
           phospholipase A2; otherwise known as Group IVA-1 PLA2.
           It contains the lipase consensus sequence
           (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the
           role of this serine as a nucleophile. Some members of
           this group show triacylglycerol lipase activity (EC
           3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3
           from Aedes aegypti and show acylglycerol
           transacylase/lipase activity. Also includes putative
           iPLA2-eta from Pediculus humanus corporis which shows
           patatin-like phospholipase activity.
          Length = 245

 Score = 25.0 bits (55), Expect = 3.8
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 13/51 (25%)

Query: 5   NIANTFISLLLNLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLD 55
           N ANT I L             +R N+ R +  +   + E ++ LC +G D
Sbjct: 196 NWANTSIEL-------------SRQNIYRLVRILFPPRPEVLSSLCQQGFD 233


>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and
           modification].
          Length = 552

 Score = 24.9 bits (54), Expect = 4.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 12  SLLLNLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAK 52
           +LL ++DEK + +L+        L  V + +V   A    K
Sbjct: 175 NLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIK 215


>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit;
           Provisional.
          Length = 846

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 17  LDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCA--KGLDPN 57
           L EK    +    NLKRFL+ +  SQ EK+ K     K  +PN
Sbjct: 304 LREKYHVIISGSENLKRFLDEIGFSQEEKLEKALKLIKKENPN 346


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,309,427
Number of extensions: 231573
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 12
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)