RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15934
(70 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.009
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 19 EKQ-LKALHTRSNLKRF-------LEYVNNSQVE 44
EKQ LK L +++LK + L + +E
Sbjct: 18 EKQALKKL--QASLKLYADDSAPALAI--KATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.011
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 13 LLLNLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPN 57
L++ + ++ + ++VN ++ I + L+P
Sbjct: 328 RRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPA 369
Score = 25.6 bits (55), Expect = 1.3
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 10/47 (21%)
Query: 11 ISLLLNLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPN 57
I L L + + ALH + +++ N + L P
Sbjct: 431 IYLELKVKLENEYALH-----RSIVDHYN-----IPKTFDSDDLIPP 467
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single
cryo-EM, high resolution, late protein, VIR virus; 4.20A
{Bovine papillomavirus type 1}
Length = 495
Score = 26.3 bits (58), Expect = 0.66
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 2 VTSNIANTFISLLLNLDEKQLKALHTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPN 57
V N T +++ + D L + S + ++ ++ I +LC+ +
Sbjct: 330 VGDNTRGTNLTISVASDGTPL-TEYDSSKFNVYHRHMEEYKLAFILELCSVEITAQ 384
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 26.1 bits (58), Expect = 0.81
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 1 MVTSNIANTFISLLLNLDEKQLKALHTRSNLKRFLEYVN---NSQVEKIAKLCAKGLDPN 57
M+ I + K ++ ++K +E+ N + + I KLC + +
Sbjct: 13 MIEYRIEEAVAKYREFYEFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKKLCLEARENR 72
Query: 58 F 58
F
Sbjct: 73 F 73
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia
reductive methylation, structural genomics, PSI-2,
protein initiative; HET: MLY; 2.00A {Streptococcus
pneumoniae} PDB: 2ho5_A
Length = 325
Score = 25.8 bits (57), Expect = 1.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 3 TSNIANTFISLLLNLDEKQLKALHTRS 29
T I++ FI E QL A+++R
Sbjct: 9 TGAISHHFIEAAHTSGEYQLVAIYSRK 35
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 24.9 bits (55), Expect = 2.3
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 3 TSNIANTFISLLLNLDEKQLKALHTRS 29
T+ +A FI + ++ A+ +R+
Sbjct: 13 TAKVAPRFIEGVRLAGNGEVVAVSSRT 39
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 24.5 bits (54), Expect = 2.7
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 36 EYVNNSQVEKIAKLCAKGLDPNFH 59
Y +++AK+ + P+F
Sbjct: 23 RYNLTKDPKELAKIAFIEVRPDFA 46
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta
TIM barrel, riken S genomics/proteomics initiative,
RSGI, structural genomics,; 2.00A {Aeropyrum pernix}
SCOP: c.1.10.1
Length = 234
Score = 24.5 bits (54), Expect = 2.8
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 16 NLDEKQLKALHTRSNLKRFLEYVN---NSQVEKIAKLCAKGLDPNFHC 60
++ ++ L L + +L ++ + E + L + D F C
Sbjct: 5 DILQQGLDRLGSPEDLASRIDSTLLSPRATEEDVRNLVREASDYGFRC 52
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 24.6 bits (54), Expect = 3.0
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 3 TSNIANTFISLLLNLDEKQLKALHTRS 29
++IA + + + +RS
Sbjct: 14 CADIARKVSRAIHLAPNATISGVASRS 40
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 24.5 bits (54), Expect = 3.5
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 3 TSNIANTFISLLLNLDEKQLKALHTRS 29
T+ I F++ L + +++ + +R
Sbjct: 13 TAQIVPRFVAGLRESAQAEVRGIASRR 39
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel,
DEOC, DERA, structur genomics, structural genomics
consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP:
c.1.10.1
Length = 281
Score = 24.3 bits (53), Expect = 3.7
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 44 EKIAKLCAKGLDPNFHC 60
+ I +LC + +
Sbjct: 48 DDIRELCNESVKTCPFA 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 964,239
Number of extensions: 40304
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 13
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)