RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15934
         (70 letters)



>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
          jannaschii [TaxId: 2190]}
          Length = 100

 Score = 26.7 bits (59), Expect = 0.12
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 1  MVTSNIANTFISLLLNLD--EKQLKALHTRSNLKRFLEYVNNSQVEKIA 47
          +++   + T ISL+++ +  +K LKAL           ++NN+ +  ++
Sbjct: 48 LISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVS 96


>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
          {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 25.4 bits (55), Expect = 0.62
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)

Query: 16 NLDEKQLKAL----HTRSNLKRFLEYVNNSQVEKIAKLCAKGLDPNFHC 60
          +L    L+AL     T   L       ++   EK+  LC +   P  + 
Sbjct: 3  DLKASSLRALKLMDLT--TLN------DDDTDEKVIALCHQAKTPVGNT 43


>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase
          {Plasmodium yoelii yoelii [TaxId: 73239]}
          Length = 256

 Score = 23.5 bits (50), Expect = 2.7
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 44 EKIAKLCAKGLDPNFHC 60
          + I +LC + +      
Sbjct: 27 DDIRELCNESVKTCPFA 43


>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
          {Thermus thermophilus [TaxId: 274]}
          Length = 211

 Score = 22.6 bits (48), Expect = 5.5
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 44 EKIAKLCAKGLDPNFHC 60
          E++AK   + L+  F+ 
Sbjct: 18 EEVAKAAEEALEYGFYG 34


>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
          {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 22.2 bits (47), Expect = 7.4
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 20 KQLKALHTRSNLKRFLEYVN---NSQVEKIAKLCAKGLDPNFHC 60
          K ++      ++K  +E+ N    +  + I KLC +  +  FH 
Sbjct: 24 KPVRESAGIEDVKSAIEHTNLKPFATPDDIKKLCLEARENRFHG 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,182
Number of extensions: 7597
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 7
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)