BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15935
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 113/200 (56%), Gaps = 8/200 (4%)
Query: 5 GDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLK 64
GDYFP+ G CLGFE L + + E L T + + L F + +++ FP + L
Sbjct: 122 GDYFPVWGTCLGFEELSLLISGEC-LLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLL 180
Query: 65 ALAKNNITYNYHIWCITRA--TMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGI 122
+LA +T N+H W ++ TMN KL +++LT + G +F+ST++ KYP G+
Sbjct: 181 SLAVEPLTANFHKWSLSVKNFTMNE-KLKKFFNVLTTNTDGK-IEFISTMEGYKYPVYGV 238
Query: 123 QFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHAYPSHADLYKEVIYNYA 182
Q+HPEK YEW + ++H+ A++T+ ++ V EA KN H + S ++ K +IY ++
Sbjct: 239 QWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFS 298
Query: 183 PTMSYPLNNKTSFEQIYFFD 202
P + N +SF+Q Y FD
Sbjct: 299 PIYT---GNISSFQQCYIFD 315
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 5 GDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLK 64
G PILG+CLG + + + + +R FH +S L N S LY
Sbjct: 75 GKRTPILGVCLGHQAIGYAFGAK--IRRARKVFHGKISNIILVNNSPLSLYY-------- 124
Query: 65 ALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
+AK YH + ++ + DA I E + + ++YP G+QF
Sbjct: 125 GIAKEFKATRYHSLVVDE--VHRPLIVDA--ISAEDNE------IMAIHHEEYPIYGVQF 174
Query: 125 HPE 127
HPE
Sbjct: 175 HPE 177
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 10 ILGICLGFELLLFVENKEKELRTDCNCFHENL----SLRFLKNGSKTGLYK-TFPKKSLK 64
++G+CLG +LL F E++E + N+ S R G ++K TFP
Sbjct: 82 VVGVCLGMQLL-FEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPN---- 136
Query: 65 ALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
+ Y C + +T+ +G+ F S V+ + +G QF
Sbjct: 137 --GYYYFVHTYRAVCEEEHVLGTTEY-------------DGEIFPSAVRKGR--ILGFQF 179
Query: 125 HPEKNS 130
HPEK+S
Sbjct: 180 HPEKSS 185
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 10 ILGICLGFELLLFVENKEKELRTDCNCFHENL----SLRFLKNGSKTGLYK-TFPKKSLK 64
++G+CLG +LL F E++E + N+ S R G ++K TFP
Sbjct: 80 VVGVCLGMQLL-FEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPN---- 134
Query: 65 ALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
+ Y C + +T+ +G+ F S V+ + +G QF
Sbjct: 135 --GYYYFVHTYRAVCEEEHVLGTTEY-------------DGEIFPSAVRKGR--ILGFQF 177
Query: 125 HPEKNS 130
HPEK+S
Sbjct: 178 HPEKSS 183
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 65 ALAKNNITYN---YHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPF 119
A+ ++N N YH+ TR+ N+T D+W ++ AGN + ++ P+
Sbjct: 79 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPY 136
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 65 ALAKNNITYN---YHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPF 119
A+ ++N N YH+ TR+ N+T D+W ++ AGN + ++ P+
Sbjct: 86 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPY 143
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 9 PILGICLGFELLL-FVENKEKELRTDCNCFH-ENLSLRFLKNGSKTGLYKTFPKKSLKAL 66
P+LGICLG +LL E K ++ C + +R L+ G + + +K
Sbjct: 74 PLLGICLGXQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHXGWNTVQVKEG 133
Query: 67 AK--NNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
N I + + + + + T ++ G+ F + +Q+ Y G+QF
Sbjct: 134 HPLFNGIEPDAYFYFVH-------SFAXPVGDYTIAQCEYGQPFSAAIQAGNY--YGVQF 184
Query: 125 HPEKNS 130
HPE++S
Sbjct: 185 HPERSS 190
>pdb|4F0H|A Chain A, Unactivated Rubisco With Oxygen Bound
pdb|4F0K|A Chain A, Unactivated Rubisco With Magnesium And Carbon Dioxide
Bound
pdb|4F0M|A Chain A, Unactivated Rubisco With Magnesium And A Water Molecule
Bound
Length = 493
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 156 IVTEASKNKHAYPSHADLYKEVIYNYAPT 184
I+ EA+KN A + DL+K++ +NY T
Sbjct: 452 ILREAAKNXGALRTALDLWKDITFNYTST 480
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
Query: 10 ILGICLGFELLLFVENKEKELRTDCNCFHENL----SLRFLKNGSKTGLYK-TFPKKSLK 64
++G+CLG +LL F E++E + N+ S R G ++K TFP
Sbjct: 80 VVGVCLGMQLL-FEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPN---- 134
Query: 65 ALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
+ Y C + +T+ +G+ F S V+ + +G QF
Sbjct: 135 --GYYAFVHTYRAVCEEEHVLGTTEY-------------DGEIFPSAVRKGR--ILGFQF 177
Query: 125 HPEKNS 130
HPE +S
Sbjct: 178 HPEASS 183
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRF---LKNGSKTGLYKTFPKKSL-K 64
PI+GIC+G + LF + E T N LS RF K + G P ++L
Sbjct: 81 PIMGICVGLQ-ALFAGSVESPKSTGLNYIDFKLS-RFDDSEKPVPEIGWNSCIPSENLFF 138
Query: 65 ALAKNNITYNYHIWCITRATMNSTKL----SDAWDILTESKAGNGKKFVSTVQSKKYPFV 120
L Y H + A +NS K +D W I ++K G+ ++F++ V K
Sbjct: 139 GLDPYKRYYFVHSFA---AILNSEKKKNLENDGWKI-AKAKYGS-EEFIAAVN--KNNIF 191
Query: 121 GIQFHPEKNS 130
QFHPEK+
Sbjct: 192 ATQFHPEKSG 201
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 47 KNGSKTGLYKTFPKKSLKALAKNNITYN 74
+ GSK G +T PKKS + ++ N +N
Sbjct: 462 QGGSKLGSKRTLPKKSFEQISANITKFN 489
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,176,337
Number of Sequences: 62578
Number of extensions: 241348
Number of successful extensions: 655
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 26
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)