Query psy15935
Match_columns 202
No_of_seqs 188 out of 1909
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:51:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1559|consensus 100.0 1.5E-49 3.2E-54 315.8 10.7 196 2-202 142-340 (340)
2 cd01747 GATase1_Glutamyl_Hydro 100.0 2.9E-48 6.3E-53 322.9 15.7 184 2-186 87-272 (273)
3 COG0512 PabA Anthranilate/para 100.0 3.7E-28 8.1E-33 188.9 10.6 110 5-135 72-181 (191)
4 PRK08857 para-aminobenzoate sy 99.9 7.5E-25 1.6E-29 174.1 11.5 112 6-135 71-183 (193)
5 PLN02335 anthranilate synthase 99.9 9.7E-25 2.1E-29 176.9 11.8 110 4-132 88-200 (222)
6 PRK08007 para-aminobenzoate sy 99.9 9.4E-25 2E-29 172.7 10.6 106 6-133 71-176 (187)
7 TIGR00566 trpG_papA glutamine 99.9 1.8E-24 4E-29 171.2 11.4 108 6-134 71-178 (188)
8 PRK06895 putative anthranilate 99.9 1.4E-24 2.9E-29 172.2 10.1 109 6-135 71-179 (190)
9 TIGR00888 guaA_Nterm GMP synth 99.9 8.4E-24 1.8E-28 167.3 10.5 119 6-162 69-187 (188)
10 PRK05670 anthranilate synthase 99.9 8.1E-24 1.8E-28 167.6 10.4 103 6-130 71-173 (189)
11 PRK07649 para-aminobenzoate/an 99.9 1.3E-23 2.8E-28 167.2 11.4 106 6-133 71-176 (195)
12 PRK05637 anthranilate synthase 99.9 2.7E-23 5.8E-28 166.8 12.6 119 6-134 72-194 (208)
13 cd01743 GATase1_Anthranilate_S 99.9 1.5E-23 3.2E-28 165.3 10.8 106 6-135 70-177 (184)
14 CHL00101 trpG anthranilate syn 99.9 1.1E-23 2.4E-28 167.0 9.3 105 6-132 71-176 (190)
15 PRK06774 para-aminobenzoate sy 99.9 2.2E-23 4.8E-28 165.3 10.7 108 6-132 71-179 (191)
16 PRK07765 para-aminobenzoate sy 99.9 2E-23 4.3E-28 168.4 10.3 105 6-132 75-179 (214)
17 PRK00758 GMP synthase subunit 99.9 5.9E-23 1.3E-27 161.9 9.5 104 6-133 66-169 (184)
18 PF00117 GATase: Glutamine ami 99.9 5.6E-23 1.2E-27 162.6 7.7 120 6-158 71-191 (192)
19 cd01742 GATase1_GMP_Synthase T 99.9 9.7E-23 2.1E-27 160.0 8.8 103 7-133 70-172 (181)
20 PLN02347 GMP synthetase 99.9 2.3E-22 4.9E-27 180.8 11.4 123 7-165 86-208 (536)
21 TIGR01368 CPSaseIIsmall carbam 99.9 1.1E-21 2.4E-26 168.5 11.8 114 7-161 243-357 (358)
22 COG2071 Predicted glutamine am 99.9 3.1E-22 6.8E-27 160.5 7.2 123 6-163 106-241 (243)
23 PRK09065 glutamine amidotransf 99.9 5.8E-22 1.3E-26 162.2 8.2 104 6-130 87-190 (237)
24 COG0518 GuaA GMP synthase - Gl 99.9 4.8E-22 1E-26 158.1 7.2 101 7-130 79-179 (198)
25 PRK11366 puuD gamma-glutamyl-g 99.9 1.3E-21 2.8E-26 161.6 8.2 122 6-162 106-246 (254)
26 cd01744 GATase1_CPSase Small c 99.9 6.2E-21 1.3E-25 149.7 11.0 99 6-131 68-166 (178)
27 PRK00074 guaA GMP synthase; Re 99.8 3.4E-21 7.4E-26 173.0 10.8 121 6-164 74-194 (511)
28 PF07722 Peptidase_C26: Peptid 99.8 1.5E-21 3.3E-26 157.8 6.5 104 2-127 101-217 (217)
29 PLN02889 oxo-acid-lyase/anthra 99.8 4.6E-21 9.9E-26 179.5 10.6 114 7-134 162-324 (918)
30 PRK14607 bifunctional glutamin 99.8 8.7E-21 1.9E-25 171.3 11.3 106 6-133 72-177 (534)
31 PRK12564 carbamoyl phosphate s 99.8 1.2E-20 2.7E-25 162.2 11.7 99 6-131 247-345 (360)
32 PRK09522 bifunctional glutamin 99.8 1.5E-20 3.2E-25 169.2 12.5 105 6-135 76-180 (531)
33 TIGR01815 TrpE-clade3 anthrani 99.8 1.1E-20 2.3E-25 174.6 11.5 106 6-132 587-692 (717)
34 PRK13566 anthranilate synthase 99.8 1.1E-20 2.4E-25 174.8 11.5 105 6-131 597-701 (720)
35 PRK07567 glutamine amidotransf 99.8 4.8E-21 1E-25 157.2 8.1 105 5-131 91-195 (242)
36 CHL00197 carA carbamoyl-phosph 99.8 2.1E-20 4.6E-25 161.4 11.3 115 6-163 262-377 (382)
37 PRK12838 carbamoyl phosphate s 99.8 4E-20 8.6E-25 158.7 12.0 114 8-162 238-352 (354)
38 COG0505 CarA Carbamoylphosphat 99.8 2.1E-20 4.5E-25 157.1 9.8 119 5-164 248-366 (368)
39 PRK05665 amidotransferase; Pro 99.8 5.9E-20 1.3E-24 150.5 9.3 101 7-131 91-191 (240)
40 PLN02771 carbamoyl-phosphate s 99.8 4.5E-20 9.8E-25 160.1 9.1 99 7-132 310-408 (415)
41 cd01741 GATase1_1 Subgroup of 99.8 4E-20 8.7E-25 146.0 7.4 101 6-127 80-180 (188)
42 PRK08250 glutamine amidotransf 99.8 8E-20 1.7E-24 149.4 9.3 102 6-130 83-184 (235)
43 KOG0026|consensus 99.8 7.1E-20 1.5E-24 138.6 7.3 112 5-135 90-204 (223)
44 KOG3179|consensus 99.8 9.5E-20 2E-24 142.0 6.0 146 7-181 93-241 (245)
45 PRK06490 glutamine amidotransf 99.8 5E-19 1.1E-23 145.0 10.6 98 6-130 85-183 (239)
46 COG0118 HisH Glutamine amidotr 99.8 8.8E-19 1.9E-23 137.4 11.2 105 6-130 73-189 (204)
47 TIGR01823 PabB-fungal aminodeo 99.8 9.7E-19 2.1E-23 162.8 12.8 105 5-132 84-190 (742)
48 PRK07053 glutamine amidotransf 99.8 4.6E-19 1E-23 144.7 9.0 102 6-131 82-183 (234)
49 cd01746 GATase1_CTP_Synthase T 99.8 6E-19 1.3E-23 144.0 4.8 120 6-130 83-222 (235)
50 CHL00188 hisH imidazole glycer 99.7 8.1E-18 1.8E-22 135.2 10.1 106 6-133 73-198 (210)
51 cd01745 GATase1_2 Subgroup of 99.7 4E-18 8.8E-23 135.0 6.9 77 6-131 99-176 (189)
52 PRK13170 hisH imidazole glycer 99.7 2.8E-17 6E-22 130.9 10.7 100 7-134 70-186 (196)
53 cd01748 GATase1_IGP_Synthase T 99.7 1.5E-17 3.3E-22 132.5 8.9 100 6-129 70-186 (198)
54 PRK13146 hisH imidazole glycer 99.7 1.3E-17 2.9E-22 134.0 8.4 101 5-129 75-193 (209)
55 PRK13141 hisH imidazole glycer 99.7 2.7E-17 5.8E-22 131.8 9.9 101 6-129 71-187 (205)
56 PRK13181 hisH imidazole glycer 99.7 1.7E-17 3.6E-22 132.4 7.8 100 6-129 71-185 (199)
57 PRK14004 hisH imidazole glycer 99.7 1E-16 2.3E-21 128.8 10.7 104 6-130 71-196 (210)
58 PRK13527 glutamine amidotransf 99.7 1.1E-16 2.4E-21 127.8 10.4 100 6-129 76-184 (200)
59 PRK13152 hisH imidazole glycer 99.7 1.3E-16 2.7E-21 127.6 9.4 100 6-129 72-187 (201)
60 PRK13525 glutamine amidotransf 99.7 1.8E-16 3.9E-21 125.6 10.1 97 6-130 71-175 (189)
61 PRK13143 hisH imidazole glycer 99.7 3E-16 6.5E-21 125.3 11.3 100 6-129 70-183 (200)
62 TIGR01855 IMP_synth_hisH imida 99.7 1.3E-16 2.9E-21 127.0 8.8 99 6-129 70-182 (196)
63 KOG1622|consensus 99.7 3.7E-17 8E-22 140.5 5.8 138 7-180 88-226 (552)
64 PRK06186 hypothetical protein; 99.7 9E-17 2E-21 129.9 6.7 53 73-130 157-210 (229)
65 PRK05380 pyrG CTP synthetase; 99.6 4.6E-16 1E-20 138.4 8.4 139 6-163 371-529 (533)
66 PLN02327 CTP synthase 99.6 1.8E-15 3.9E-20 135.0 10.0 141 5-165 389-551 (557)
67 KOG1224|consensus 99.6 1.4E-15 3.1E-20 133.0 8.1 112 6-134 94-206 (767)
68 TIGR00337 PyrG CTP synthase. C 99.6 3.8E-15 8.3E-20 132.6 9.8 120 6-130 371-510 (525)
69 cd01749 GATase1_PB Glutamine A 99.6 7E-15 1.5E-19 115.9 7.9 95 6-130 68-174 (183)
70 PRK13142 hisH imidazole glycer 99.5 2.6E-14 5.6E-19 113.1 8.7 98 6-130 69-174 (192)
71 PLN02617 imidazole glycerol ph 99.5 5.4E-14 1.2E-18 126.7 11.9 102 6-130 78-196 (538)
72 PRK05368 homoserine O-succinyl 99.5 5.2E-14 1.1E-18 118.3 8.3 105 7-130 135-240 (302)
73 TIGR03800 PLP_synth_Pdx2 pyrid 99.5 1.4E-13 3.1E-18 108.5 9.1 43 73-129 131-173 (184)
74 TIGR01737 FGAM_synth_I phospho 99.5 3.9E-14 8.4E-19 115.3 5.0 122 6-133 77-210 (227)
75 KOG0370|consensus 99.4 4.8E-13 1.1E-17 123.5 8.4 119 8-167 241-359 (1435)
76 COG0504 PyrG CTP synthase (UTP 99.4 4.6E-13 1E-17 116.9 5.0 74 73-164 456-530 (533)
77 PLN02832 glutamine amidotransf 99.3 5.4E-11 1.2E-15 97.6 11.3 51 69-130 152-202 (248)
78 PRK03619 phosphoribosylformylg 99.1 9.9E-11 2.1E-15 94.8 4.4 121 6-132 78-202 (219)
79 KOG0623|consensus 99.0 1.2E-09 2.7E-14 91.9 6.1 109 6-130 73-194 (541)
80 KOG2387|consensus 98.9 1.1E-09 2.4E-14 94.7 4.1 58 73-134 477-535 (585)
81 COG0047 PurL Phosphoribosylfor 98.7 3.2E-08 6.9E-13 79.3 5.0 25 109-133 189-213 (231)
82 cd01740 GATase1_FGAR_AT Type 1 98.5 3.8E-07 8.3E-12 74.7 7.8 26 109-134 195-220 (238)
83 PRK01175 phosphoribosylformylg 98.5 2.1E-07 4.5E-12 77.3 5.9 25 109-133 208-232 (261)
84 PRK13526 glutamine amidotransf 98.5 1.5E-06 3.2E-11 68.1 9.2 35 89-130 134-168 (179)
85 PF13507 GATase_5: CobB/CobQ-l 98.1 1E-05 2.2E-10 67.1 6.9 26 109-134 209-234 (259)
86 COG0311 PDX2 Predicted glutami 97.8 0.00019 4E-09 56.1 9.3 34 90-130 145-178 (194)
87 PRK05297 phosphoribosylformylg 97.8 7.2E-05 1.6E-09 74.3 8.0 26 109-134 1239-1264(1290)
88 PF01174 SNO: SNO glutamine am 97.8 7.6E-05 1.6E-09 58.6 6.4 32 92-130 142-173 (188)
89 TIGR01735 FGAM_synt phosphorib 97.7 7.2E-05 1.6E-09 74.2 7.3 26 109-134 1260-1285(1310)
90 TIGR01857 FGAM-synthase phosph 97.7 0.00012 2.6E-09 72.0 8.3 25 109-133 1195-1219(1239)
91 PF04204 HTS: Homoserine O-suc 97.6 8.4E-05 1.8E-09 62.5 5.4 105 7-131 134-240 (298)
92 PLN03206 phosphoribosylformylg 97.6 0.00016 3.5E-09 71.6 7.6 26 109-134 1252-1277(1307)
93 cd03131 GATase1_HTS Type 1 glu 97.2 0.00011 2.5E-09 57.4 0.6 77 6-98 97-174 (175)
94 PHA03366 FGAM-synthase; Provis 97.1 0.0024 5.1E-08 63.8 8.4 26 109-134 1247-1272(1304)
95 TIGR01739 tegu_FGAM_synt herpe 96.9 0.0043 9.4E-08 61.6 8.9 26 109-134 1148-1173(1202)
96 TIGR01001 metA homoserine O-su 96.9 0.0011 2.4E-08 55.6 3.7 103 7-130 135-239 (300)
97 KOG3210|consensus 96.6 0.0098 2.1E-07 46.0 6.7 23 6-28 90-112 (226)
98 cd01750 GATase1_CobQ Type 1 gl 96.1 0.0033 7.1E-08 49.9 2.1 18 6-23 71-88 (194)
99 cd03130 GATase1_CobB Type 1 gl 95.7 0.0055 1.2E-07 48.7 1.9 21 6-26 74-94 (198)
100 PRK06278 cobyrinic acid a,c-di 95.5 0.0064 1.4E-07 54.8 1.5 19 7-25 65-83 (476)
101 KOG1907|consensus 95.1 0.059 1.3E-06 51.4 6.5 25 109-133 1265-1289(1320)
102 PF07685 GATase_3: CobB/CobQ-l 93.1 0.066 1.4E-06 40.9 2.3 20 5-24 40-59 (158)
103 COG1897 MetA Homoserine trans- 93.1 0.14 3E-06 42.3 4.1 104 10-131 138-241 (307)
104 TIGR00313 cobQ cobyric acid sy 92.8 0.067 1.4E-06 48.3 2.1 18 6-23 318-335 (475)
105 PRK00784 cobyric acid synthase 91.7 0.11 2.4E-06 47.0 2.2 18 6-23 324-341 (488)
106 TIGR00379 cobB cobyrinic acid 89.6 0.23 5E-06 44.5 2.3 18 6-23 320-337 (449)
107 PRK13896 cobyrinic acid a,c-di 88.4 0.29 6.3E-06 43.7 2.0 18 6-23 307-324 (433)
108 COG1492 CobQ Cobyric acid synt 87.9 0.3 6.5E-06 44.0 1.7 19 5-23 323-341 (486)
109 cd01653 GATase1 Type 1 glutami 87.4 0.3 6.5E-06 32.9 1.2 15 6-20 78-92 (115)
110 PRK01077 cobyrinic acid a,c-di 87.3 0.41 8.8E-06 42.9 2.3 18 6-23 321-338 (451)
111 cd03144 GATase1_ScBLP_like Typ 85.0 0.41 8.9E-06 34.8 0.9 15 6-20 76-90 (114)
112 cd03146 GAT1_Peptidase_E Type 82.9 0.72 1.6E-05 36.9 1.6 18 6-23 113-130 (212)
113 COG3442 Predicted glutamine am 82.2 0.62 1.3E-05 37.7 1.0 19 5-23 85-103 (250)
114 PF09075 STb_secrete: Heat-sta 72.2 1.1 2.4E-05 26.0 -0.2 14 10-23 32-45 (48)
115 cd03169 GATase1_PfpI_1 Type 1 70.1 3.2 6.9E-05 32.0 2.0 18 6-23 107-124 (180)
116 TIGR01382 PfpI intracellular p 61.0 6.7 0.00014 29.6 2.2 18 6-23 91-108 (166)
117 cd03134 GATase1_PfpI_like A ty 50.4 12 0.00027 28.0 2.1 18 6-23 93-110 (165)
118 cd03133 GATase1_ES1 Type 1 glu 35.0 33 0.00071 27.6 2.4 18 6-23 124-141 (213)
119 PRK11780 isoprenoid biosynthes 34.6 37 0.00079 27.4 2.6 19 6-25 127-145 (217)
120 PF08343 RNR_N: Ribonucleotide 31.4 33 0.00071 23.3 1.5 30 151-180 25-54 (82)
121 cd03140 GATase1_PfpI_3 Type 1 29.6 44 0.00095 25.3 2.2 18 6-23 90-107 (170)
122 cd03137 GATase1_AraC_1 AraC tr 28.4 47 0.001 25.4 2.2 18 6-23 95-112 (187)
123 PF09825 BPL_N: Biotin-protein 26.2 4.5E+02 0.0098 23.1 9.0 43 91-133 173-221 (367)
124 COG0693 ThiJ Putative intracel 25.0 53 0.0011 25.2 2.0 18 6-23 98-115 (188)
125 cd03135 GATase1_DJ-1 Type 1 gl 24.8 58 0.0013 24.0 2.1 18 6-23 92-109 (163)
126 PF00400 WD40: WD domain, G-be 23.3 1.3E+02 0.0029 15.9 3.6 20 109-128 4-23 (39)
127 TIGR01383 not_thiJ DJ-1 family 22.2 69 0.0015 24.2 2.1 18 6-23 95-112 (179)
128 PF01965 DJ-1_PfpI: DJ-1/PfpI 20.8 64 0.0014 23.8 1.6 18 6-23 70-87 (147)
No 1
>KOG1559|consensus
Probab=100.00 E-value=1.5e-49 Score=315.79 Aligned_cols=196 Identities=35% Similarity=0.675 Sum_probs=180.4
Q ss_pred CCCCCcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEecc-CCCccccccCChhHHHHhhhcceeeeeeeeeE
Q psy15935 2 NSRGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKN-GSKTGLYKTFPKKSLKALAKNNITYNYHIWCI 80 (202)
Q Consensus 2 n~~g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~-~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v 80 (202)
||+|+++||+|||+||++|..++.-++.++...+..+...+++++.. ...++||+.+|++++..|..++.++++|.+++
T Consensus 142 nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gi 221 (340)
T KOG1559|consen 142 NDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGI 221 (340)
T ss_pred cCCccccchhhhhhhHHHHHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeecccccc
Confidence 89999999999999999999985658888888887777888999864 34689999999999999999999999999999
Q ss_pred eecccccc-cCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHH
Q psy15935 81 TRATMNST-KLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTE 159 (202)
Q Consensus 81 ~~~~~~~~-~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ 159 (202)
+|.+|+.+ .|.+.|.|+.++.|.++.+||++++.+.||++|+|||||+.++||+. ..+||++++++++|+.|++|+++
T Consensus 222 sp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgs-s~IpHsedAiqvtqhaA~~lVsE 300 (340)
T KOG1559|consen 222 SPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGS-SDIPHSEDAIQVTQHAANYLVSE 300 (340)
T ss_pred chhhccCCHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCcccccc-CCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999 99999999999977778899999999999999999999999999997 56999999999999999999999
Q ss_pred HHhCCCCCCChHhhhhhcccccceeeecCCCCC-CCeeEEeecC
Q psy15935 160 ASKNKHAYPSHADLYKEVIYNYAPTMSYPLNNK-TSFEQIYFFD 202 (202)
Q Consensus 160 ar~~~~~f~~~~e~~~~li~n~~~~~~~~~~~~-~~~~~~y~f~ 202 (202)
|||+.|+++|. ++.+.|||||+|+|+ |-. .+|.|||||+
T Consensus 301 ARKs~nrp~Se-kvlsnLIYnykPtY~---Gy~gsg~devYIFt 340 (340)
T KOG1559|consen 301 ARKSLNRPESE-KVLSNLIYNYKPTYC---GYAGSGYDEVYIFT 340 (340)
T ss_pred HHhhcCCccHH-HHHHHHHhccCccee---ccccCccceEEeeC
Confidence 99999999765 778889999999999 844 7899999996
No 2
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=2.9e-48 Score=322.87 Aligned_cols=184 Identities=38% Similarity=0.709 Sum_probs=168.6
Q ss_pred CCCCCcccEEeEcHHHHHHHhhhcCCee-ccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeE
Q psy15935 2 NSRGDYFPILGICLGFELLLFVENKEKE-LRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCI 80 (202)
Q Consensus 2 n~~g~~~PilGIC~G~QlL~~~~~gg~~-~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v 80 (202)
|++|+++||||||+|||+|+.+ +||++ .+...+.++...|+++++....++||+++|.++...+.+...++++|++++
T Consensus 87 ~~~g~~~Pv~GiClG~QlL~~~-~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v 165 (273)
T cd01747 87 NDAGDYFPVWGTCLGFELLTYL-TSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGI 165 (273)
T ss_pred hhcCCCCcEEEEcHHHHHHHHH-hCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhccccc
Confidence 7899999999999999999999 89874 446667788889999988778899999999999999999999999999999
Q ss_pred eecccccc-cCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHH
Q psy15935 81 TRATMNST-KLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTE 159 (202)
Q Consensus 81 ~~~~~~~~-~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ 159 (202)
+++++..+ .|+..++++|++.++++.+||++++++++|+||+|||||++.+||+....++|+.++++.+|++++||+++
T Consensus 166 ~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e 245 (273)
T cd01747 166 SPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNE 245 (273)
T ss_pred CHhhcccccccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 98877655 78888999999755568999999999999999999999999999987667999999999999999999999
Q ss_pred HHhCCCCCCChHhhhhhcccccceeee
Q psy15935 160 ASKNKHAYPSHADLYKEVIYNYAPTMS 186 (202)
Q Consensus 160 ar~~~~~f~~~~e~~~~li~n~~~~~~ 186 (202)
||+|+|+|++.+|+.+.|||||+|+|+
T Consensus 246 ~r~n~~~f~~~~~~~~~lIyn~~p~~~ 272 (273)
T cd01747 246 ARKSNNRFESAEEETKHLIYNYKPTYT 272 (273)
T ss_pred HhcCCCCCCCHHHHHHhhhccCCCccC
Confidence 999999999999999999999999987
No 3
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=3.7e-28 Score=188.95 Aligned_cols=110 Identities=27% Similarity=0.481 Sum_probs=96.2
Q ss_pred CCcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 5 GDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
.+++||||||+|||.|+.+ +||++.+...+.||++..+. ..++.+|+++|..+. +..||+..+.+++
T Consensus 72 ~~~~PiLGVCLGHQai~~~-fGg~V~~a~~~~HGK~s~i~----h~g~~iF~glp~~f~--------v~RYHSLvv~~~~ 138 (191)
T COG0512 72 AGRIPILGVCLGHQAIAEA-FGGKVVRAKEPMHGKTSIIT----HDGSGLFAGLPNPFT--------VTRYHSLVVDPET 138 (191)
T ss_pred cCCCCEEEECccHHHHHHH-hCCEEEecCCCcCCeeeeee----cCCcccccCCCCCCE--------EEeeEEEEecCCC
Confidence 4679999999999999999 99999999999999877443 235789999998865 4899999999765
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccccc
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNT 135 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~ 135 (202)
+|+.++++|++ ++++. |++++++++|++|+|||||...++.+.
T Consensus 139 -----lP~~l~vtA~~-~d~~~--IMai~h~~~pi~gvQFHPESilT~~G~ 181 (191)
T COG0512 139 -----LPEELEVTAES-EDGGV--IMAVRHKKLPIYGVQFHPESILTEYGH 181 (191)
T ss_pred -----CCCceEEEEEe-CCCCE--EEEEeeCCCCEEEEecCCccccccchH
Confidence 99999999997 45567 999999999999999999999988864
No 4
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=7.5e-25 Score=174.08 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=87.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+.+|...++.. ..+.+|.+++..+ .++++|+++|.+.
T Consensus 71 ~~~PiLGIClG~Qlia~a-~Gg~v~~~~~~~~G~~~~~~~----~~~~l~~~~~~~~--------~v~~~H~~~v~~~-- 135 (193)
T PRK08857 71 GKLPILGVCLGHQAIAQV-FGGQVVRARQVMHGKTSPIRH----TGRSVFKGLNNPL--------TVTRYHSLVVKND-- 135 (193)
T ss_pred CCCCEEEEcHHHHHHHHH-hCCEEEeCCCceeCceEEEEE----CCCcccccCCCcc--------EEEEccEEEEEcC--
Confidence 579999999999999999 999998876666665444443 2456888876553 4699999999644
Q ss_pred ccccCCCcceEeeeeec-CCCceeEEEEeecCCCEEEEeeeCCccCccccc
Q psy15935 86 NSTKLSDAWDILTESKA-GNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNT 135 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~-~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~ 135 (202)
.||++++++|++.. +.....|+++++++.|+||+|||||+..++++.
T Consensus 136 ---~lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~ 183 (193)
T PRK08857 136 ---TLPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGH 183 (193)
T ss_pred ---CCCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchH
Confidence 49999999998731 222356999999999999999999999877753
No 5
>PLN02335 anthranilate synthase
Probab=99.92 E-value=9.7e-25 Score=176.88 Aligned_cols=110 Identities=21% Similarity=0.442 Sum_probs=88.7
Q ss_pred CCCcccEEeEcHHHHHHHhhhcCCeeccccCC-ccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEee
Q psy15935 4 RGDYFPILGICLGFELLLFVENKEKELRTDCN-CFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITR 82 (202)
Q Consensus 4 ~g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~-~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~ 82 (202)
.+.++||||||+|||+|+.+ +||++.+...+ .+|...++..+.. ..+.||+++|..+ .++++|+++|++
T Consensus 88 ~~~~~PiLGIClG~QlLa~a-lGg~v~~~~~~~~~G~~~~v~~~~~-~~~~Lf~~l~~~~--------~v~~~H~~~v~~ 157 (222)
T PLN02335 88 LGPLVPLFGVCMGLQCIGEA-FGGKIVRSPFGVMHGKSSPVHYDEK-GEEGLFSGLPNPF--------TAGRYHSLVIEK 157 (222)
T ss_pred hCCCCCEEEecHHHHHHHHH-hCCEEEeCCCccccCceeeeEECCC-CCChhhhCCCCCC--------EEEechhheEec
Confidence 46789999999999999999 99998877654 5677777766542 3567999988653 469999999986
Q ss_pred cccccccCCCc-ceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccCcc
Q psy15935 83 ATMNSTKLSDA-WDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNSYE 132 (202)
Q Consensus 83 ~~~~~~~L~~~-~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~~e 132 (202)
+. +|.+ ++++|++ .++. |++++++++| +||+|||||+...+
T Consensus 158 ~~-----lp~~~~~v~a~~--~~~~--v~ai~~~~~~~i~GvQfHPE~~~~~ 200 (222)
T PLN02335 158 DT-----FPSDELEVTAWT--EDGL--IMAARHRKYKHIQGVQFHPESIITT 200 (222)
T ss_pred cc-----CCCCceEEEEEc--CCCC--EEEEEecCCCCEEEEEeCCCCCCCh
Confidence 54 6766 9999985 4566 9999999888 99999999997544
No 6
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.92 E-value=9.4e-25 Score=172.71 Aligned_cols=106 Identities=20% Similarity=0.383 Sum_probs=87.3
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+.+|...++... .+.+|.+++.. ..++++|+++|.+.
T Consensus 71 ~~~PiLGIClG~Q~la~a-~Gg~v~~~~~~~~g~~~~v~~~----~~~l~~~~~~~--------~~v~~~H~~~v~~~-- 135 (187)
T PRK08007 71 GRLPILGVCLGHQAMAQA-FGGKVVRAAKVMHGKTSPITHN----GEGVFRGLANP--------LTVTRYHSLVVEPD-- 135 (187)
T ss_pred CCCCEEEECHHHHHHHHH-cCCEEEeCCCcccCCceEEEEC----CCCcccCCCCC--------cEEEEcchhEEccC--
Confidence 468999999999999999 9999988877778876666542 44588887654 34699999999654
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
.+|++++++|++ .++. |+++++++.|++|+|||||+...+.
T Consensus 136 ---~lp~~~~v~a~~--~~~~--i~a~~~~~~~i~GvQfHPE~~~t~~ 176 (187)
T PRK08007 136 ---SLPACFEVTAWS--ETRE--IMGIRHRQWDLEGVQFHPESILSEQ 176 (187)
T ss_pred ---CCCCCeEEEEEe--CCCc--EEEEEeCCCCEEEEEeCCcccCCcc
Confidence 389999999996 4566 9999999999999999999976554
No 7
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.92 E-value=1.8e-24 Score=171.16 Aligned_cols=108 Identities=19% Similarity=0.368 Sum_probs=86.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....+|...++..+ .+.+|.+++.. ..++++|++.|.+.
T Consensus 71 ~~~PvLGIC~G~Qll~~~-~GG~v~~~~~~~~g~~~~v~~~----~~~~~~~l~~~--------~~v~~~H~~~v~~~-- 135 (188)
T TIGR00566 71 GKLPILGVCLGHQAMGQA-FGGDVVRANTVMHGKTSEIEHN----GAGIFRGLFNP--------LTATRYHSLVVEPE-- 135 (188)
T ss_pred cCCCEEEECHHHHHHHHH-cCCEEeeCCCccccceEEEEEC----CCccccCCCCC--------cEEEEcccceEecc--
Confidence 478999999999999999 9999988766667766666653 34577777643 34699999999754
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
.+|++++++|++ +.++. |++++++++|+||+|||||+..++.+
T Consensus 136 ---~l~~~~~v~a~s-~~~~~--v~a~~~~~~~i~gvQfHPE~~~t~~G 178 (188)
T TIGR00566 136 ---TLPTCFPVTAWE-EENIE--IMAIRHRDLPLEGVQFHPESILSEQG 178 (188)
T ss_pred ---cCCCceEEEEEc-CCCCE--EEEEEeCCCCEEEEEeCCCccCCccc
Confidence 389999999997 44555 99999999999999999999866554
No 8
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.91 E-value=1.4e-24 Score=172.17 Aligned_cols=109 Identities=24% Similarity=0.407 Sum_probs=87.0
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....++...++.. .++++||+++|..+ .++++|++++++..
T Consensus 71 ~~~PiLGIClG~Qlla~~-~Gg~V~~~~~~~~g~~~~v~~---~~~~~l~~~~~~~~--------~v~~~Hs~~v~~~~- 137 (190)
T PRK06895 71 QHKSILGVCLGHQTLCEF-FGGELYNLNNVRHGQQRPLKV---RSNSPLFDGLPEEF--------NIGLYHSWAVSEEN- 137 (190)
T ss_pred CCCCEEEEcHHHHHHHHH-hCCeEeecCCCccCceEEEEE---CCCChhhhcCCCce--------EEEcchhheecccc-
Confidence 478999999999999999 999987654445665555543 34678999988654 36999999997543
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNT 135 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~ 135 (202)
+|+++.++|.+ .++. +++++++++|+||+|||||+..++++.
T Consensus 138 ----lp~~l~~~a~~--~~~~--i~a~~~~~~pi~GvQFHPE~~~~~~g~ 179 (190)
T PRK06895 138 ----FPTPLEITAVC--DENV--VMAMQHKTLPIYGVQFHPESYISEFGE 179 (190)
T ss_pred ----cCCCeEEEEEC--CCCc--EEEEEECCCCEEEEEeCCCcCCCcchH
Confidence 78888888875 3343 999999999999999999998888864
No 9
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.90 E-value=8.4e-24 Score=167.27 Aligned_cols=119 Identities=24% Similarity=0.435 Sum_probs=90.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.....+..| ..++.++. .++||..++..+ .++.+|++++.
T Consensus 69 ~~~PilGIC~G~Qll~~~-lgg~v~~~~~~~~g-~~~v~~~~---~~~l~~~~~~~~--------~~~~~H~~~v~---- 131 (188)
T TIGR00888 69 LGVPVLGICYGMQLMAKQ-LGGEVGRAEKREYG-KAELEILD---EDDLFRGLPDES--------TVWMSHGDKVK---- 131 (188)
T ss_pred CCCCEEEECHHHHHHHHh-cCceEecCCCccce-eEEEEEec---CCHhhcCCCCCc--------EEEeEccceee----
Confidence 468999999999999999 99998766554444 44566543 467888887653 35889999986
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASK 162 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~ 162 (202)
.||++++++|++ + ++. ++++++++.|+||+|||||++..+.+ .+.|.+|+.++||+
T Consensus 132 ---~l~~~~~vla~~-~-~~~--v~a~~~~~~~~~g~QfHPE~~~~~~g--------------~~i~~~f~~~~~~~ 187 (188)
T TIGR00888 132 ---ELPEGFKVLATS-D-NCP--VAAMAHEEKPIYGVQFHPEVTHTEYG--------------NELLENFVYDVCGC 187 (188)
T ss_pred ---cCCCCCEEEEEC-C-CCC--eEEEEECCCCEEEEeeCCccCCChhh--------------HHHHHHHHHHhhCC
Confidence 599999999996 3 344 99999988899999999999753222 24466665557764
No 10
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.90 E-value=8.1e-24 Score=167.57 Aligned_cols=103 Identities=25% Similarity=0.476 Sum_probs=82.7
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....+|...++.. ..+.+|.+++.. ..++++|+++|.+.
T Consensus 71 ~~~PvLGIClG~Qlla~a-lGg~v~~~~~~~~g~~~~v~~----~~~~l~~~~~~~--------~~v~~~H~~~v~~~-- 135 (189)
T PRK05670 71 GKVPILGVCLGHQAIGEA-FGGKVVRAKEIMHGKTSPIEH----DGSGIFAGLPNP--------FTVTRYHSLVVDRE-- 135 (189)
T ss_pred CCCCEEEECHHHHHHHHH-hCCEEEecCCcccCceeEEEe----CCCchhccCCCC--------cEEEcchhheeccc--
Confidence 458999999999999999 999988776556665555541 356688887754 34699999999642
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
.||++++++|++ + ++. ++++++++.|+||+|||||+..
T Consensus 136 ---~lp~~~~~la~s-~-~~~--i~a~~~~~~~~~gvQfHPE~~~ 173 (189)
T PRK05670 136 ---SLPDCLEVTAWT-D-DGE--IMGVRHKELPIYGVQFHPESIL 173 (189)
T ss_pred ---cCCCceEEEEEe-C-CCc--EEEEEECCCCEEEEeeCCCcCC
Confidence 389999999997 4 455 9999998899999999999964
No 11
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.90 E-value=1.3e-23 Score=167.20 Aligned_cols=106 Identities=21% Similarity=0.435 Sum_probs=85.1
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....+|...++.. ..+++|++++..+ .++++|++.+...
T Consensus 71 ~~~PvLGIClG~Qlla~~-lGg~V~~~~~~~~G~~~~i~~----~~~~lf~~~~~~~--------~v~~~H~~~v~~~-- 135 (195)
T PRK07649 71 GKIPIFGVCLGHQSIAQV-FGGEVVRAERLMHGKTSLMHH----DGKTIFSDIPNPF--------TATRYHSLIVKKE-- 135 (195)
T ss_pred CCCCEEEEcHHHHHHHHH-cCCEEeeCCCcccCCeEEEEE----CCChhhcCCCCCC--------EEEEechheEecc--
Confidence 468999999999999999 999998876666776554432 2457999887653 4699999999643
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
.+|++++++|.+ + ++. ++++++++.|+||+|||||+...+.
T Consensus 136 ---~lp~~~~~~a~s-~-~~~--v~a~~~~~~~i~gvQFHPE~~~t~~ 176 (195)
T PRK07649 136 ---TLPDCLEVTSWT-E-EGE--IMAIRHKTLPIEGVQFHPESIMTSH 176 (195)
T ss_pred ---cCCCCeEEEEEc-C-CCc--EEEEEECCCCEEEEEECCCCCCCcc
Confidence 389999999996 3 455 8999999999999999999875543
No 12
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.90 E-value=2.7e-23 Score=166.82 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=88.6
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhH----HHHhhhcceeeeeeeeeEe
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKS----LKALAKNNITYNYHIWCIT 81 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~----~~~~~~~~~~~~~H~~~v~ 81 (202)
+++||||||+|||+|+.+ +||++.... ..+|...++.+++....+++|.+++... ...++....++.+|++.|.
T Consensus 72 ~~~PiLGIClG~Qlla~a-lGG~V~~~~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~ 149 (208)
T PRK05637 72 GQIPLLGICLGFQALLEH-HGGKVEPCG-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCV 149 (208)
T ss_pred CCCCEEEEcHHHHHHHHH-cCCeeccCC-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhh
Confidence 479999999999999999 999987543 4566655566665555678998876321 1111233568999999997
Q ss_pred ecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 82 RATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 82 ~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
.+|++++++|++ +++....++++++++.++||+|||||...++.+
T Consensus 150 -------~lp~~~~vlA~s-~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G 194 (208)
T PRK05637 150 -------VAPDGMESLGTC-SSEIGPVIMAAETTDGKAIGLQFHPESVLSPTG 194 (208)
T ss_pred -------cCCCCeEEEEEe-cCCCCCEEEEEEECCCCEEEEEeCCccCcCCCH
Confidence 599999999996 332122388889888999999999999877654
No 13
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.90 E-value=1.5e-23 Score=165.33 Aligned_cols=106 Identities=23% Similarity=0.417 Sum_probs=85.7
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
+++||||||+|||+|+.+ +||++.+.+...++...++..+ .+.+|..++..+ .++++|+++|+.
T Consensus 70 ~~~PvlGIC~G~Qlla~~-~Gg~v~~~~~~~~g~~~~v~~~----~~~~~~~~~~~~--------~~~~~H~~~v~~--- 133 (184)
T cd01743 70 GKVPILGVCLGHQAIAEA-FGGKVVRAPEPMHGKTSEIHHD----GSGLFKGLPQPF--------TVGRYHSLVVDP--- 133 (184)
T ss_pred cCCCEEEECHhHHHHHHH-hCCEEEeCCCCCcCceeEEEEC----CCccccCCCCCc--------EEEeCcEEEEec---
Confidence 359999999999999999 9999888776666666666543 456888887653 469999999984
Q ss_pred ccccCCCc--ceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccccc
Q psy15935 86 NSTKLSDA--WDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNT 135 (202)
Q Consensus 86 ~~~~L~~~--~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~ 135 (202)
++.+ ++++|.+ .++. |++++++++|+||+|||||+..++|+.
T Consensus 134 ----~~~~~~~~~la~~--~~~~--v~a~~~~~~~i~gvQfHPE~~~~~~g~ 177 (184)
T cd01743 134 ----DPLPDLLEVTAST--EDGV--IMALRHRDLPIYGVQFHPESILTEYGL 177 (184)
T ss_pred ----CCCCceEEEEEeC--CCCe--EEEEEeCCCCEEEEeeCCCcCCCcchH
Confidence 5555 8999996 3444 999999988999999999999888864
No 14
>CHL00101 trpG anthranilate synthase component 2
Probab=99.90 E-value=1.1e-23 Score=167.02 Aligned_cols=105 Identities=26% Similarity=0.462 Sum_probs=83.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+.+|....+. ...+++|.+++..+ .++++|++.|++.
T Consensus 71 ~~~PiLGIClG~Qlla~~-~Gg~V~~~~~~~~g~~~~~~----~~~~~l~~~~~~~~--------~v~~~H~~~v~~~-- 135 (190)
T CHL00101 71 PYIPILGVCLGHQSIGYL-FGGKIIKAPKPMHGKTSKIY----HNHDDLFQGLPNPF--------TATRYHSLIIDPL-- 135 (190)
T ss_pred CCCcEEEEchhHHHHHHH-hCCEEEECCCcccCceeeEe----eCCcHhhccCCCce--------EEEcchhheeecc--
Confidence 579999999999999999 99999887766677654332 13456888887653 4699999999743
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccCcc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNSYE 132 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~~e 132 (202)
.||++++++|++ .++. +++++++++| +||+|||||+...+
T Consensus 136 ---~lp~~~~vla~s--~~~~--v~a~~~~~~~~i~gvQfHPE~~~~~ 176 (190)
T CHL00101 136 ---NLPSPLEITAWT--EDGL--IMACRHKKYKMLRGIQFHPESLLTT 176 (190)
T ss_pred ---cCCCceEEEEEc--CCCc--EEEEEeCCCCCEEEEEeCCccCCCh
Confidence 389999999996 3455 9999999999 99999999996443
No 15
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=2.2e-23 Score=165.32 Aligned_cols=108 Identities=24% Similarity=0.407 Sum_probs=81.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....+|... +... ..+++|++++.. ..++++|++++.+.
T Consensus 71 ~~~PiLGIC~G~Qlla~~-~GG~v~~~~~~~~G~~~-~~~~---~~~~lf~~l~~~--------~~v~~~Hs~~v~~~-- 135 (191)
T PRK06774 71 DKLPILGVCLGHQALGQA-FGARVVRARQVMHGKTS-AICH---SGQGVFRGLNQP--------LTVTRYHSLVIAAD-- 135 (191)
T ss_pred CCCCEEEECHHHHHHHHH-hCCEEEeCCcceecceE-EEEe---cCchhhcCCCCC--------cEEEEeCcceeecc--
Confidence 479999999999999999 99998876544555432 2221 345688887654 35799999999643
Q ss_pred ccccCCCcceEeeeeecCCCc-eeEEEEeecCCCEEEEeeeCCccCcc
Q psy15935 86 NSTKLSDAWDILTESKAGNGK-KFVSTVQSKKYPFVGIQFHPEKNSYE 132 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~-~~v~~i~~~~~pi~gvQfHPE~~~~e 132 (202)
.||++++++|+| +.++. +.|+++++++.|+||+|||||+...+
T Consensus 136 ---~lp~~~~vlA~s-~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~ 179 (191)
T PRK06774 136 ---SLPGCFELTAWS-ERGGEMDEIMGIRHRTLPLEGVQFHPESILSE 179 (191)
T ss_pred ---CCCCCeEEEEEe-CCCCCcceEEEEEeCCCCEEEEEECCCcCCCc
Confidence 489999999997 43442 45778899888999999999996443
No 16
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=2e-23 Score=168.36 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=84.0
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.+.+.+|...++.++ .+.+|.+++..+ .++++|++.+.+..
T Consensus 75 ~~~PiLGIC~G~Qlla~a-~GG~v~~~~~~~~g~~~~v~~~----~~~~~~~~~~~~--------~v~~~H~~~v~~~~- 140 (214)
T PRK07765 75 AGTPLLGVCLGHQAIGVA-FGATVDRAPELLHGKTSSVHHT----GVGVLAGLPDPF--------TATRYHSLTILPET- 140 (214)
T ss_pred CCCCEEEEccCHHHHHHH-hCCEEeeCCCCccCceeEEEEC----CCccccCCCCcc--------EEEecchheEeccc-
Confidence 469999999999999999 9999988766666665555543 334777776543 46899999997553
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYE 132 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e 132 (202)
||++++++|++ .++. ++++++++.++||+|||||+...+
T Consensus 141 ----lp~~~~vla~s--~~~~--vqa~~~~~~~i~gvQfHPE~~~t~ 179 (214)
T PRK07765 141 ----LPAELEVTART--DSGV--IMAVRHRELPIHGVQFHPESVLTE 179 (214)
T ss_pred ----CCCceEEEEEc--CCCc--EEEEEeCCCCEEEEeeCCCcccCc
Confidence 89999999996 4555 999999888999999999987544
No 17
>PRK00758 GMP synthase subunit A; Validated
Probab=99.89 E-value=5.9e-23 Score=161.90 Aligned_cols=104 Identities=28% Similarity=0.467 Sum_probs=81.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+..| ..++.++. .+.+|.++++.+ .++.+|++.+.
T Consensus 66 ~~~PilGIC~G~Q~L~~a-~Gg~v~~~~~~~~g-~~~i~~~~---~~~l~~~~~~~~--------~~~~~H~~~v~---- 128 (184)
T PRK00758 66 LDVPILGICLGHQLIAKA-FGGEVGRGEYGEYA-LVEVEILD---EDDILKGLPPEI--------RVWASHADEVK---- 128 (184)
T ss_pred CCCCEEEEeHHHHHHHHh-cCcEEecCCCceee-eEEEEEcC---CChhhhCCCCCc--------EEEeehhhhhh----
Confidence 369999999999999999 99998776554444 33455442 456888877653 46899999986
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
.+|++++++|++ + ++. |+++++++.|+||+|||||+...++
T Consensus 129 ---~l~~~~~~la~~-~-~~~--v~a~~~~~~~~~g~QfHPE~~~~~~ 169 (184)
T PRK00758 129 ---ELPDGFEILARS-D-ICE--VEAMKHKEKPIYGVQFHPEVAHTEY 169 (184)
T ss_pred ---hCCCCCEEEEEC-C-CCC--EEEEEECCCCEEEEEcCCccCCCch
Confidence 599999999996 3 444 8999998889999999999975443
No 18
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.88 E-value=5.6e-23 Score=162.63 Aligned_cols=120 Identities=24% Similarity=0.453 Sum_probs=91.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeecccc-CCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTD-CNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~-~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
.++||||||+|||+|+.+ +||++.... .+..+...++.... .+++|.+++..+ .++.+|++.|.+..
T Consensus 71 ~~~PilGIC~G~Q~la~~-~G~~v~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~--------~~~~~H~~~v~~~~ 138 (192)
T PF00117_consen 71 RKIPILGICLGHQILAHA-LGGKVVPSPEKPHHGGNIPISETP---EDPLFYGLPESF--------KAYQYHSDAVNPDD 138 (192)
T ss_dssp TTSEEEEETHHHHHHHHH-TTHEEEEEESEEEEEEEEEEEEEE---EHGGGTTSTSEE--------EEEEEECEEEEEGH
T ss_pred cceEEEEEeehhhhhHHh-cCCccccccccccccccccccccc---cccccccccccc--------ccccccceeeeccc
Confidence 579999999999999999 999988765 45566666555432 257888887654 45999999999432
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHH
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVT 158 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~ 158 (202)
.+|++++++|++ +.+.. ++++.+++.|+||+|||||++....+. ..+.+||.+
T Consensus 139 ----~~p~~~~~la~s-~~~~~--~~~~~~~~~~i~g~QfHPE~~~~~~~~--------------~~l~nf~~~ 191 (192)
T PF00117_consen 139 ----LLPEGFEVLASS-SDGCP--IQAIRHKDNPIYGVQFHPEFSSSPGGP--------------QLLKNFFLK 191 (192)
T ss_dssp ----HHHTTEEEEEEE-TTTTE--EEEEEECTTSEEEESSBTTSTTSTTHH--------------HHHHHHHHH
T ss_pred ----cccccccccccc-ccccc--cccccccccEEEEEecCCcCCCCCCcc--------------hhhhheeEe
Confidence 289999999997 33324 788888888999999999998765432 567888865
No 19
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.88 E-value=9.7e-23 Score=160.00 Aligned_cols=103 Identities=24% Similarity=0.418 Sum_probs=82.1
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
++||||||+|||+|+.+ +||++.+...+..| ..++..+ ..+++|++++..+ .++.+|+++|.
T Consensus 70 ~~PilGIC~G~Qll~~~-~gg~v~~~~~~~~G-~~~v~~~---~~~~l~~~~~~~~--------~~~~~H~~~v~----- 131 (181)
T cd01742 70 GVPVLGICYGMQLIAKA-LGGKVERGDKREYG-KAEIEID---DSSPLFEGLPDEQ--------TVWMSHGDEVV----- 131 (181)
T ss_pred CCCEEEEcHHHHHHHHh-cCCeEEeCCCCcce-EEEEEec---CCChhhcCCCCce--------EEEcchhhhhh-----
Confidence 78999999999999999 99998776554444 3445432 3578999887653 35899999986
Q ss_pred cccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 87 STKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
.+|++++++|++ + ++. ++++++++.++||+|||||++..+.
T Consensus 132 --~l~~~~~~la~~-~-~~~--i~a~~~~~~~~~g~QfHPE~~~~~~ 172 (181)
T cd01742 132 --KLPEGFKVIASS-D-NCP--VAAIANEEKKIYGVQFHPEVTHTEK 172 (181)
T ss_pred --hcCCCcEEEEeC-C-CCC--EEEEEeCCCcEEEEEcCCccccCcC
Confidence 599999999997 3 444 9999998889999999999986543
No 20
>PLN02347 GMP synthetase
Probab=99.88 E-value=2.3e-22 Score=180.78 Aligned_cols=123 Identities=17% Similarity=0.357 Sum_probs=96.8
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
++||||||+|||+|+.+ +||++.+.....+| ..++.+. .++.||++++... ...+|++|++.+.
T Consensus 86 ~iPILGIClG~QlLa~a-lGG~V~~~~~~e~G-~~~v~i~---~~~~Lf~~l~~~~------~~~v~~~Hsd~V~----- 149 (536)
T PLN02347 86 GVPVLGICYGMQLIVQK-LGGEVKPGEKQEYG-RMEIRVV---CGSQLFGDLPSGE------TQTVWMSHGDEAV----- 149 (536)
T ss_pred CCcEEEECHHHHHHHHH-cCCEEEecCCcccc-eEEEEEc---CCChhhhcCCCCc------eEEEEEEEEEEee-----
Confidence 69999999999999999 99998776544455 3445542 3667999887541 1356999999987
Q ss_pred cccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy15935 87 STKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKH 165 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~~~ 165 (202)
.+|++++++|++ .++. |+++++++.|+||+|||||+...+.+. +.+.||+.+.|+.+..
T Consensus 150 --~lP~g~~vlA~s--~~~~--iaai~~~~~~i~GvQFHPE~~~t~~G~--------------~iL~NFl~~ic~~~~~ 208 (536)
T PLN02347 150 --KLPEGFEVVAKS--VQGA--VVAIENRERRIYGLQYHPEVTHSPKGM--------------ETLRHFLFDVCGVTAD 208 (536)
T ss_pred --eCCCCCEEEEEe--CCCc--EEEEEECCCCEEEEEccCCCCccchHH--------------HHHHHHHHHHhCcCCC
Confidence 599999999996 3455 899999889999999999997554432 5589999999998753
No 21
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.87 E-value=1.1e-21 Score=168.48 Aligned_cols=114 Identities=22% Similarity=0.389 Sum_probs=87.0
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
++||||||+|||+|+.+ +||++.+...+.+|.+.|+.... .++++ .+.++|+++|.++.
T Consensus 243 ~~PILGIClG~QlLa~a-~Gg~v~kl~~gh~G~nhpV~~~~---~~~v~---------------itsqnH~~aV~~~~-- 301 (358)
T TIGR01368 243 KIPIFGICLGHQLLALA-FGAKTYKMKFGHRGGNHPVKDLI---TGRVE---------------ITSQNHGYAVDPDS-- 301 (358)
T ss_pred CCCEEEECHHHHHHHHH-hCCceeccCcCcCCCceeeEECC---CCcEE---------------EeecCCCcEEcccc--
Confidence 68999999999999999 99998887777777777765421 12222 24678999998764
Q ss_pred cccCC-CcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy15935 87 STKLS-DAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEAS 161 (202)
Q Consensus 87 ~~~L~-~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar 161 (202)
|+ +++++++++ ..++. |++++++++|++|||||||+.+... + +.++.+-|++.++
T Consensus 302 ---l~~~~l~vta~~-~nDg~--Vegi~h~~~pi~gVQfHPE~~~gp~--------d------~~~lF~~F~~~~~ 357 (358)
T TIGR01368 302 ---LPAGDLEVTHVN-LNDGT--VEGIRHKDLPVFSVQYHPEASPGPH--------D------TEYLFDEFIDLIK 357 (358)
T ss_pred ---cCCCceEEEEEE-CCCCc--EEEEEECCCCEEEEEECCCCCCCCC--------C------hHHHHHHHHHHhh
Confidence 56 789999997 35677 9999999999999999999975332 1 2456666776664
No 22
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.86 E-value=3.1e-22 Score=160.53 Aligned_cols=123 Identities=23% Similarity=0.297 Sum_probs=88.6
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCC-----cc-------ceeeeeeEeccCCCccccccCChhHHHHhhhcceee
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCN-----CF-------HENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITY 73 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~-----~~-------~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~ 73 (202)
+++||||||+|+|+|+++ +||++...... .| -.+.+++.. .++.|.+-+.+. ...++
T Consensus 106 ~~iPILgICRG~QllNVa-~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~---~~s~La~i~g~~-------~~~VN 174 (243)
T COG2071 106 RGIPILGICRGLQLLNVA-LGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIE---PGSKLAKILGES-------EFMVN 174 (243)
T ss_pred cCCCEEEEccchHHHHHH-hcCeeehhhhcccccccccCCCCcccceeEEEec---CCccHHHhcCcc-------ceeec
Confidence 579999999999999999 99997643221 11 112233332 344444433322 03468
Q ss_pred eeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecC-CCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHH
Q psy15935 74 NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKK-YPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLF 152 (202)
Q Consensus 74 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~-~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~ 152 (202)
++|+++|. +|.++++++|.+ .||. |+||++++ ..++|||||||+...+. ..++.+
T Consensus 175 S~HhQaIk-------~La~~L~V~A~a--~DG~--VEAie~~~~~fvlGVQWHPE~~~~~~-------------~~~~~L 230 (243)
T COG2071 175 SFHHQAIK-------KLAPGLVVEARA--PDGT--VEAVEVKNDAFVLGVQWHPEYLVDTN-------------PLSLAL 230 (243)
T ss_pred chHHHHHH-------HhCCCcEEEEEC--CCCc--EEEEEecCCceEEEEecChhhhccCC-------------hHHHHH
Confidence 99999998 699999999995 6898 99999986 45899999999864322 245778
Q ss_pred HHHHHHHHHhC
Q psy15935 153 YDWIVTEASKN 163 (202)
Q Consensus 153 ~~~f~~~ar~~ 163 (202)
.+.|+++|++.
T Consensus 231 Fe~F~~~~~~~ 241 (243)
T COG2071 231 FEAFVNACKKH 241 (243)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 23
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.86 E-value=5.8e-22 Score=162.18 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=84.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.+.+.+....++.++.....+.+|++++..+. ++.+|++.|.
T Consensus 87 ~~~PvlGIC~G~Qlla~a-lGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~--------v~~~H~d~v~---- 153 (237)
T PRK09065 87 AGMPLLGICYGHQLLAHA-LGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFP--------AHLTHLQSVL---- 153 (237)
T ss_pred CCCCEEEEChhHHHHHHH-cCCccccCCCCCccceEEEEEccccccChhhhcCCccCc--------Eeeehhhhhh----
Confidence 369999999999999999 999988766544444567887766666789988887644 5899999986
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
.||++++++|++ +.+. +++++.++ ++||+|||||++.
T Consensus 154 ---~lp~~~~~la~s-~~~~---iqa~~~~~-~i~gvQfHPE~~~ 190 (237)
T PRK09065 154 ---RLPPGAVVLARS-AQDP---HQAFRYGP-HAWGVQFHPEFTA 190 (237)
T ss_pred ---hCCCCCEEEEcC-CCCC---eeEEEeCC-CEEEEEeCCcCCH
Confidence 599999999997 4444 89998864 6999999999864
No 24
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.86 E-value=4.8e-22 Score=158.10 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=82.9
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
.+||||||+|||+|+.+ +||++........| ..+++.++ ..+.+|++++.... .++++|.+.++
T Consensus 79 ~~pvLGIC~G~Ql~A~~-lGg~V~~~~~~E~G-~~~v~~~~--~~~~l~~gl~~~~~-------~v~~sH~D~v~----- 142 (198)
T COG0518 79 GKPVLGICLGHQLLAKA-LGGKVERGPKREIG-WTPVELTE--GDDPLFAGLPDLFT-------TVFMSHGDTVV----- 142 (198)
T ss_pred CCCEEEEChhHHHHHHH-hCCEEeccCCCccc-eEEEEEec--CccccccCCccccC-------ccccchhCccc-----
Confidence 46899999999999999 99999887664444 56788764 23479999886642 25999999998
Q ss_pred cccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 87 STKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
+||++++++|.| +.+. +++++.. .++||+|||||.+.
T Consensus 143 --~lP~g~~vlA~s-~~cp---~qa~~~~-~~~~gvQFHpEv~~ 179 (198)
T COG0518 143 --ELPEGAVVLASS-ETCP---NQAFRYG-KRAYGVQFHPEVTH 179 (198)
T ss_pred --cCCCCCEEEecC-CCCh---hhheecC-CcEEEEeeeeEEeH
Confidence 699999999998 6666 7899987 78999999999863
No 25
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.85 E-value=1.3e-21 Score=161.64 Aligned_cols=122 Identities=25% Similarity=0.390 Sum_probs=82.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccC--C---ccce------------eeeeeEeccCCCccccccC-ChhHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDC--N---CFHE------------NLSLRFLKNGSKTGLYKTF-PKKSLKALA 67 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~--~---~~~~------------~~~i~~~~~~~~s~lf~~~-~~~~~~~~~ 67 (202)
.++||||||+|||+|+.+ +||++..... + .|+. ...+.++. +.++..+ +..
T Consensus 106 ~~~PILGICrG~Qllnva-~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~----~s~l~~i~~~~------ 174 (254)
T PRK11366 106 RRIPIFAICRGLQELVVA-TGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEE----GGLLSALLPEC------ 174 (254)
T ss_pred CCCCEEEECHhHHHHHHH-hCCeEeecccccccccccccCCccccccccCCceEEEECC----CCcHHHhcCCC------
Confidence 479999999999999999 9999876421 0 1111 12233322 2222221 110
Q ss_pred hcceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccCcccccccCCCCCHHHH
Q psy15935 68 KNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNSYEWNTVAHVNHSRIAI 146 (202)
Q Consensus 68 ~~~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~~e~~~~~~~~h~~~~~ 146 (202)
+...++.+|+++|. .|+++++++|++ .+|. |+++++++.+ ++|||||||+...+.+
T Consensus 175 ~~~~Vns~H~q~V~-------~l~~gl~v~A~s--~dg~--ieAie~~~~~~~~GVQwHPE~~~~~~~------------ 231 (254)
T PRK11366 175 SNFWVNSLHGQGAK-------VVSPRLRVEARS--PDGL--VEAVSVINHPFALGVQWHPEWNSSEYA------------ 231 (254)
T ss_pred ceEEeehHHHHHHh-------hcccceEEEEEc--CCCc--EEEEEeCCCCCEEEEEeCCCcCCCCCc------------
Confidence 12346889999987 599999999995 5677 9999998888 4999999998754321
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15935 147 ETSRLFYDWIVTEASK 162 (202)
Q Consensus 147 ~~~~~~~~~f~~~ar~ 162 (202)
..+.+.+.|++.|++
T Consensus 232 -~~~~lf~~fv~~~~~ 246 (254)
T PRK11366 232 -LSRILFEGFITACQH 246 (254)
T ss_pred -hHHHHHHHHHHHHHH
Confidence 124467777888875
No 26
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.85 E-value=6.2e-21 Score=149.73 Aligned_cols=99 Identities=25% Similarity=0.431 Sum_probs=75.2
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.....+.++...++.... .+.. ..+.++|++++.++
T Consensus 68 ~~~PvlGIC~G~Q~l~~~-~Gg~v~~~~~~~~g~~~~v~~~~---~~~~---------------~~v~~~H~~~v~~~-- 126 (178)
T cd01744 68 KKIPIFGICLGHQLLALA-LGAKTYKMKFGHRGSNHPVKDLI---TGRV---------------YITSQNHGYAVDPD-- 126 (178)
T ss_pred CCCCEEEECHHHHHHHHH-cCCceecCCCCCCCCceeeEEcC---CCCc---------------EEEEcCceEEEccc--
Confidence 359999999999999999 99998776555555544554321 1111 23478999999754
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
.+|++++++|+| ..++. ++++++++.|+||+|||||+...
T Consensus 127 ---~lp~~~~v~a~s-~~~~~--i~a~~~~~~~i~GvQfHPE~~~~ 166 (178)
T cd01744 127 ---SLPGGLEVTHVN-LNDGT--VEGIRHKDLPVFSVQFHPEASPG 166 (178)
T ss_pred ---ccCCceEEEEEE-CCCCc--EEEEEECCCCeEEEeeCCCCCCC
Confidence 389999999996 34565 99999999999999999998653
No 27
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.85 E-value=3.4e-21 Score=173.01 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=93.8
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++........| ..++.++. ++.||++++.. ..++.+|+++|.
T Consensus 74 ~~~PvLGIC~G~QlLa~~-lGG~V~~~~~~e~G-~~~i~i~~---~~~Lf~~l~~~--------~~v~~~H~d~V~---- 136 (511)
T PRK00074 74 LGVPVLGICYGMQLMAHQ-LGGKVERAGKREYG-RAELEVDN---DSPLFKGLPEE--------QDVWMSHGDKVT---- 136 (511)
T ss_pred CCCCEEEECHHHHHHHHH-hCCeEEecCCcccc-eEEEEEcC---CChhhhcCCCc--------eEEEEECCeEEE----
Confidence 369999999999999999 99998776544455 34465532 56799888764 346899999997
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNK 164 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~~ 164 (202)
.+|++++++|+| + ++. ++++++.+.++||+|||||++..+.+ .+.|.+|..+.|....
T Consensus 137 ---~lp~g~~vlA~s-~-~~~--v~ai~~~~~~i~GvQFHPE~~~t~~G--------------~~il~nFl~~i~~~~~ 194 (511)
T PRK00074 137 ---ELPEGFKVIAST-E-NCP--IAAIANEERKFYGVQFHPEVTHTPQG--------------KKLLENFVFDICGCKG 194 (511)
T ss_pred ---ecCCCcEEEEEe-C-CCC--EEEEEeCCCCEEEEeCCCCcCCchhH--------------HHHHHHHHHHhcCCCC
Confidence 599999999997 3 444 89999988899999999999754332 2567787778886543
No 28
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.84 E-value=1.5e-21 Score=157.77 Aligned_cols=104 Identities=24% Similarity=0.435 Sum_probs=69.0
Q ss_pred CCCCCcccEEeEcHHHHHHHhhhcCCeeccccCCc-----c------ceeeeeeEeccCCCccccccCChhHHHHhhhcc
Q psy15935 2 NSRGDYFPILGICLGFELLLFVENKEKELRTDCNC-----F------HENLSLRFLKNGSKTGLYKTFPKKSLKALAKNN 70 (202)
Q Consensus 2 n~~g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~-----~------~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~ 70 (202)
|..++++||||||+|||+|+++ +||++....... + ....++.+. .+.++..+.. .+..
T Consensus 101 ~a~~~~~PilGICrG~Q~lnv~-~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~----~~s~l~~~~~------~~~~ 169 (217)
T PF07722_consen 101 NALGRGKPILGICRGMQLLNVA-FGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIV----PGSLLAKILG------SEEI 169 (217)
T ss_dssp HHCCTT--EEEETHHHHHHHHH-CCSSEESCCCCSS-EEECEE-S-TS--EEEEEE----TTSTCCCTSH------HCTE
T ss_pred HHHhcCCCEEEEcHHHHHHHHH-hCCCceeecccCcCcccccccccccccccceec----cCchHHHHhC------cCcc
Confidence 4578999999999999999999 999875433221 0 112223332 2233333321 1346
Q ss_pred eeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecC--CCEEEEeeeCC
Q psy15935 71 ITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKK--YPFVGIQFHPE 127 (202)
Q Consensus 71 ~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~--~pi~gvQfHPE 127 (202)
.++++|+++|+ .|+++|+++|++ . +|. |++|+..+ +|++|+|||||
T Consensus 170 ~vns~Hhq~v~-------~l~~~l~v~A~s-~-Dg~--iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 170 EVNSFHHQAVK-------PLGEGLRVTARS-P-DGV--IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EEEEEECEEEC-------CHHCCEEEEEEE-C-TSS--EEEEEECCESS-EEEESS-CC
T ss_pred eeecchhhhhh-------ccCCCceEEEEe-c-CCc--EEEEEEcCCCCCEEEEEeCCC
Confidence 78999999998 599999999997 3 555 67776666 57999999999
No 29
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.84 E-value=4.6e-21 Score=179.52 Aligned_cols=114 Identities=21% Similarity=0.373 Sum_probs=89.4
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
.+||||||+|||+|+.+ +||++.+.+.+.||....+.. ..+.||.++|... .+.-.+..||++.|.+.
T Consensus 162 ~iPILGICLGhQ~i~~~-~Gg~V~~~~~~~HG~~s~I~h----~~~~lF~glp~~~----~~~f~v~RYHSL~v~~~--- 229 (918)
T PLN02889 162 DIPILGVCLGHQALGYV-HGARIVHAPEPVHGRLSEIEH----NGCRLFDDIPSGR----NSGFKVVRYHSLVIDAE--- 229 (918)
T ss_pred CCcEEEEcHHHHHHHHh-cCceEEeCCCceeeeeeeEee----cCchhhcCCCcCC----CCCceEEeCCCcccccC---
Confidence 59999999999999999 999999988889998766653 3567999998620 01124689999999755
Q ss_pred cccCCCcceEeeeeecCC------------------------------------C-------------ceeEEEEeecCC
Q psy15935 87 STKLSDAWDILTESKAGN------------------------------------G-------------KKFVSTVQSKKY 117 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~------------------------------------~-------------~~~v~~i~~~~~ 117 (202)
.||+.++++|++.+.+ + ...||+++|+..
T Consensus 230 --~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~ 307 (918)
T PLN02889 230 --SLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTR 307 (918)
T ss_pred --CCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCC
Confidence 3899999999863211 0 024999999999
Q ss_pred CEEEEeeeCCccCcccc
Q psy15935 118 PFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 118 pi~gvQfHPE~~~~e~~ 134 (202)
|+||||||||....+.+
T Consensus 308 P~~GVQfHPESi~t~~G 324 (918)
T PLN02889 308 PHYGLQFHPESIATCYG 324 (918)
T ss_pred ceEEEEeCCccccCchh
Confidence 99999999999877653
No 30
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=8.7e-21 Score=171.27 Aligned_cols=106 Identities=25% Similarity=0.505 Sum_probs=85.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....+|...++.. ..+.+|++++..+ .++++|++++...
T Consensus 72 ~~~PvLGIClG~QlLa~a-~Gg~V~~~~~~~~G~~~~v~~----~~~~lf~~~~~~~--------~v~~~Hs~~v~~~-- 136 (534)
T PRK14607 72 GKVPILGVCLGHQAIGYA-FGGKIVHAKRILHGKTSPIDH----NGKGLFRGIPNPT--------VATRYHSLVVEEA-- 136 (534)
T ss_pred cCCCEEEEcHHHHHHHHH-cCCeEecCCccccCCceeEEE----CCCcchhcCCCCc--------EEeeccchheecc--
Confidence 468999999999999999 999988877666776655543 2456888887653 4699999999643
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
.||++++++|++ .++. |+++++++.|+||+|||||+..++.
T Consensus 137 ---~lp~~~~vlA~s--~d~~--i~a~~~~~~pi~GvQFHPE~~~t~~ 177 (534)
T PRK14607 137 ---SLPECLEVTAKS--DDGE--IMGIRHKEHPIFGVQFHPESILTEE 177 (534)
T ss_pred ---cCCCCeEEEEEc--CCCC--EEEEEECCCCEEEEEeCCCCCCChh
Confidence 389999999996 3455 9999999999999999999865443
No 31
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.84 E-value=1.2e-20 Score=162.20 Aligned_cols=99 Identities=24% Similarity=0.433 Sum_probs=79.3
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+.++...|+.... .++. ..+.++|+++|.++.
T Consensus 247 ~~~PilGIClG~QlLa~a-~Gg~v~kl~~gh~G~~~pv~~~~---~~~~---------------~its~~H~~~V~~~~- 306 (360)
T PRK12564 247 KKIPIFGICLGHQLLALA-LGAKTYKMKFGHRGANHPVKDLE---TGKV---------------EITSQNHGFAVDEDS- 306 (360)
T ss_pred cCCeEEEECHHHHHHHHH-hCCcEeccCCCccCCceeeEECC---CCcE---------------EEEecCcccEEcccc-
Confidence 369999999999999999 99998887777777767765432 1111 234789999998654
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
||+++++++++ ..++. |++++++++|+||||||||+.+.
T Consensus 307 ----lp~~l~v~a~~-~~Dg~--iegi~~~~~pi~gVQfHPE~~~g 345 (360)
T PRK12564 307 ----LPANLEVTHVN-LNDGT--VEGLRHKDLPAFSVQYHPEASPG 345 (360)
T ss_pred ----cCCceEEEEEe-CCCCc--EEEEEECCCCEEEEEeCCcCCCC
Confidence 88999999997 34666 99999999999999999999754
No 32
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=1.5e-20 Score=169.16 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=84.1
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.....+|....+.. ....+|.+++..+ .++++|++.+.
T Consensus 76 ~~iPILGIClG~QlLa~a-~GG~V~~~~~~~~G~~~~i~~----~~~~lf~~~~~~~--------~v~~~Hs~~v~---- 138 (531)
T PRK09522 76 GKLPIIGICLGHQAIVEA-YGGYVGQAGEILHGKASSIEH----DGQAMFAGLTNPL--------PVARYHSLVGS---- 138 (531)
T ss_pred cCCCEEEEcHHHHHHHHh-cCCEEEeCCceeeeeEEEEee----cCCccccCCCCCc--------EEEEehheecc----
Confidence 469999999999999999 999998766555665433321 2456888887653 46999999986
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCccccc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNT 135 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~ 135 (202)
.+|++++++|.+ ++. ++++++++.|+||+|||||+..++.+.
T Consensus 139 ---~lP~~l~vlA~s---d~~--v~ai~~~~~~i~GVQFHPEs~~T~~G~ 180 (531)
T PRK09522 139 ---NIPAGLTINAHF---NGM--VMAVRHDADRVCGFQFHPESILTTQGA 180 (531)
T ss_pred ---cCCCCcEEEEec---CCC--EEEEEECCCCEEEEEecCccccCcchH
Confidence 599999999974 355 899999989999999999999887653
No 33
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.84 E-value=1.1e-20 Score=174.64 Aligned_cols=106 Identities=21% Similarity=0.394 Sum_probs=86.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+.+|...++..+ ..+++|.+++..+ .++++|++++...
T Consensus 587 ~~iPvLGICLG~QlLa~a-~GG~V~~~~~p~~G~~~~V~~~---~~~~Lf~~lp~~~--------~v~~~HS~~~~~~-- 652 (717)
T TIGR01815 587 RGLPVFGVCLGLQGMVEA-FGGALDVLPEPVHGKASRIRVL---GPDALFAGLPERL--------TVGRYHSLFARRD-- 652 (717)
T ss_pred CCCCEEEECHHHHHHhhh-hCCEEEECCCCeeCcceEEEEC---CCChhhhcCCCCC--------EEEEECCCCcccc--
Confidence 479999999999999999 9999988777777765556543 2457898887664 4699999987543
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYE 132 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e 132 (202)
.||++++++|++ .++. ++++++++.|+||+|||||+...+
T Consensus 653 ---~LP~~~~vlA~s--~d~~--v~Ai~~~~~~i~GVQFHPEsi~T~ 692 (717)
T TIGR01815 653 ---RLPAELTVTAES--ADGL--IMAIEHRRLPLAAVQFHPESIMTL 692 (717)
T ss_pred ---cCCCCeEEEEEe--CCCc--EEEEEECCCCEEEEEeCCeeCCcc
Confidence 489999999996 4455 999999989999999999996543
No 34
>PRK13566 anthranilate synthase; Provisional
Probab=99.84 E-value=1.1e-20 Score=174.76 Aligned_cols=105 Identities=21% Similarity=0.370 Sum_probs=87.1
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.....+.++...++..+. .+.||++++.++ .++++|++++...
T Consensus 597 ~~iPILGIClG~QlLa~a-lGG~V~~~~~~~~G~~~~V~v~~---~~~Lf~~lp~~~--------~v~~~Hs~~v~~~-- 662 (720)
T PRK13566 597 RNLPIFGVCLGLQAIVEA-FGGELGQLAYPMHGKPSRIRVRG---PGRLFSGLPEEF--------TVGRYHSLFADPE-- 662 (720)
T ss_pred CCCcEEEEehhHHHHHHH-cCCEEEECCCCccCCceEEEECC---CCchhhcCCCCC--------EEEEecceeEeec--
Confidence 469999999999999999 99999877777777767777643 457999888664 4699999988744
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
.||++++++|.+ .++. |++++++++|+||+|||||+...
T Consensus 663 ---~Lp~~~~vlA~s--~dg~--V~ai~~~~~pi~GVQFHPE~i~t 701 (720)
T PRK13566 663 ---TLPDELLVTAET--EDGV--IMAIEHKTLPVAAVQFHPESIMT 701 (720)
T ss_pred ---cCCCceEEEEEe--CCCc--EEEEEECCCCEEEEeccCeeCCc
Confidence 389999999996 4455 99999998999999999999754
No 35
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.84 E-value=4.8e-21 Score=157.17 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=82.9
Q ss_pred CCcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 5 GDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
..++||||||+|||+|+.+ +||++.+ ..+.+....++.++..+..+++|..++..+. ++++|++.|.
T Consensus 91 ~~~~PvLGIC~G~Qlla~a-~GG~V~~-~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~~--------~~~~H~d~V~--- 157 (242)
T PRK07567 91 ARDFPFLGACYGVGTLGHH-QGGVVDR-TYGEPVGAVTVSLTDAGRADPLLAGLPDTFT--------AFVGHKEAVS--- 157 (242)
T ss_pred hcCCCEEEEchhHHHHHHH-cCCEEec-CCCCcCccEEEEECCccCCChhhcCCCCceE--------EEeehhhhhh---
Confidence 3569999999999999999 9999877 3333333567777766666789988876643 5889999987
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
.||++++++|+| +.+. +++++.. .++||+|||||++..
T Consensus 158 ----~lp~~~~vlA~s-~~~~---vqa~~~~-~~~~gvQfHPE~~~~ 195 (242)
T PRK07567 158 ----ALPPGAVLLATS-PTCP---VQMFRVG-ENVYATQFHPELDAD 195 (242)
T ss_pred ----hCCCCCEEEEeC-CCCC---EEEEEeC-CCEEEEEeCCcCCHH
Confidence 599999999997 4444 8999874 479999999999754
No 36
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.83 E-value=2.1e-20 Score=161.42 Aligned_cols=115 Identities=19% Similarity=0.409 Sum_probs=86.2
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+...+..+...|+.. ..++ ..+.++|++.+.++.
T Consensus 262 ~~~PilGIClGhQlLa~a-~Gg~v~k~~~Gh~g~n~pv~~-----~~~v---------------~itsq~H~~~v~~~s- 319 (382)
T CHL00197 262 YNIPIFGICMGHQILSLA-LEAKTFKLKFGHRGLNHPSGL-----NQQV---------------EITSQNHGFAVNLES- 319 (382)
T ss_pred CCCCEEEEcHHHHHHHHH-hCCEEeccCCCCCCCCEecCC-----CCce---------------EEeecchheEeeccc-
Confidence 368999999999999999 999988877665554444431 1111 123578999998664
Q ss_pred ccccCCC-cceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy15935 86 NSTKLSD-AWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKN 163 (202)
Q Consensus 86 ~~~~L~~-~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~ 163 (202)
++. ++.+++.+ ..++. |++++++++|+||||||||+.+.+ |+ ++++.++|++.++++
T Consensus 320 ----v~~~~~~vt~~~-~nDgt--vegi~h~~~pi~gVQFHPE~~~gp--------~d------~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 320 ----LAKNKFYITHFN-LNDGT--VAGISHSPKPYFSVQYHPEASPGP--------HD------ADYLFEYFIEIIKHS 377 (382)
T ss_pred ----cCCCCcEEEEEE-CCCCC--EEEEEECCCCcEEEeeCCCCCCCC--------CC------HHHHHHHHHHHHHhh
Confidence 553 68888886 34677 999999999999999999997533 32 256899999999874
No 37
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.83 E-value=4e-20 Score=158.66 Aligned_cols=114 Identities=23% Similarity=0.417 Sum_probs=85.2
Q ss_pred ccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccccc
Q psy15935 8 FPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMNS 87 (202)
Q Consensus 8 ~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~~ 87 (202)
+||||||+|||+|+.+ +||++.+...+.++...|+.... .++++ .+.++|+++|.++.
T Consensus 238 ~PvlGIClG~QlLa~a-~Gg~v~kl~~gh~G~~hpV~~~~---~~~~~---------------~ts~~H~~aV~~~s--- 295 (354)
T PRK12838 238 YPILGICLGHQLIALA-LGADTEKLPFGHRGANHPVIDLT---TGRVW---------------MTSQNHGYVVDEDS--- 295 (354)
T ss_pred CCEEEECHHHHHHHHH-hCCEEecCCCCccCCceEEEECC---CCeEE---------------EeccchheEecccc---
Confidence 8999999999999999 99999887767777777776432 22222 23578999997643
Q ss_pred ccCC-CcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy15935 88 TKLS-DAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASK 162 (202)
Q Consensus 88 ~~L~-~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~ 162 (202)
++ .++++++.+ ..++. |++++++++|++|||||||..... |+ ++.+.+.|++.+++
T Consensus 296 --l~~~~l~v~a~~-~~Dg~--Veai~~~~~pi~gVQfHPE~~~gp--------~d------~~~lF~~F~~~~~~ 352 (354)
T PRK12838 296 --LDGTPLSVRFFN-VNDGS--IEGLRHKKKPVLSVQFHPEAHPGP--------HD------AEYIFDEFLEMMEK 352 (354)
T ss_pred --cCCCCcEEEEEE-CCCCe--EEEEEECCCCEEEEEeCCCCCCCC--------cc------HHHHHHHHHHHHHh
Confidence 65 358899985 35677 999999999999999999986532 21 34566667777754
No 38
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.83 E-value=2.1e-20 Score=157.12 Aligned_cols=119 Identities=24% Similarity=0.425 Sum_probs=94.8
Q ss_pred CCcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 5 GDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
+..+||+|||+|||+|+.| +|++..+..++.+|.+.|+.-. ...+. ..+.++|.|+|+++.
T Consensus 248 ~~~iPifGICLGHQllalA-~Ga~T~KmkFGHrG~NhPV~dl---~tgrv---------------~ITSQNHGyaVd~~s 308 (368)
T COG0505 248 GTKIPIFGICLGHQLLALA-LGAKTYKMKFGHRGANHPVKDL---DTGRV---------------YITSQNHGYAVDEDS 308 (368)
T ss_pred ccCCCeEEEcHHHHHHHHh-cCCceeecccCCCCCCcCcccc---cCCeE---------------EEEecCCceecChhh
Confidence 4567999999999999999 9999999999999988887532 12222 345799999999874
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNK 164 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~~ 164 (202)
++...+++..+ -.|+. ++++++++.|+++||||||.++-.+. +.++++-|++.++...
T Consensus 309 -----~~~~~~vth~n-lnDgT--vEGi~h~~~P~fSVQ~HPEAsPGPhD--------------t~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 309 -----LVETLKVTHVN-LNDGT--VEGIRHKDLPAFSVQYHPEASPGPHD--------------TRYLFDEFIELMEAAK 366 (368)
T ss_pred -----cCCCceeEEEe-CCCCC--ccceecCCCceEEEccCCCCCCCCcc--------------cHHHHHHHHHHHHHhh
Confidence 45433778887 46777 99999999999999999999876542 3688888888877643
No 39
>PRK05665 amidotransferase; Provisional
Probab=99.81 E-value=5.9e-20 Score=150.46 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=78.8
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
++||||||+|||+|+.+ +||++.+.+.+......++.++. ...+|..+++.+ .++.+|++.|.
T Consensus 91 ~~PilGIC~GhQlla~A-lGG~V~~~~~G~e~G~~~~~~~~---~~~~~~~~~~~~--------~~~~~H~D~V~----- 153 (240)
T PRK05665 91 GDKLLGVCFGHQLLALL-LGGKAERASQGWGVGIHRYQLAA---HAPWMSPAVTEL--------TLLISHQDQVT----- 153 (240)
T ss_pred CCCEEEEeHHHHHHHHH-hCCEEEeCCCCcccceEEEEecC---CCccccCCCCce--------EEEEEcCCeee-----
Confidence 58999999999999999 99999877654433344455543 345777776553 46899999997
Q ss_pred cccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 87 STKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
.||++++++|+| +.+. +++++. +.++||+|||||++..
T Consensus 154 --~LP~ga~~La~s-~~~~---~q~~~~-~~~~~g~QfHPE~~~~ 191 (240)
T PRK05665 154 --ALPEGATVIASS-DFCP---FAAYHI-GDQVLCFQGHPEFVHD 191 (240)
T ss_pred --eCCCCcEEEEeC-CCCc---EEEEEe-CCCEEEEecCCcCcHH
Confidence 599999999997 5666 788876 3579999999998753
No 40
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.81 E-value=4.5e-20 Score=160.05 Aligned_cols=99 Identities=19% Similarity=0.358 Sum_probs=81.3
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
++||||||+|||+|+.+ +||++.+...+.+|.+.|+.... ..++ ..+.++|+++|.++.
T Consensus 310 ~iPIlGICLGhQlLa~A-lGGkv~K~~~Gh~G~n~pV~~~~---~~~v---------------~itsqnHg~aVd~~s-- 368 (415)
T PLN02771 310 KVPVFGICMGHQLLGQA-LGGKTFKMKFGHHGGNHPVRNNR---TGRV---------------EISAQNHNYAVDPAS-- 368 (415)
T ss_pred CCCEEEEcHHHHHHHHh-cCCeEEECCCCcccceEEEEECC---CCCE---------------EEEecCHHHhhcccc--
Confidence 68999999999999999 99999998888888888776421 1122 134789999997654
Q ss_pred cccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcc
Q psy15935 87 STKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYE 132 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e 132 (202)
||+++++++.+ ..|+. |+++++++.|++|||||||..+..
T Consensus 369 ---Lp~~~~vt~~n-lnDgt--vegi~~~~~pi~gVQFHPEa~pgp 408 (415)
T PLN02771 369 ---LPEGVEVTHVN-LNDGS--CAGLAFPALNVMSLQYHPEASPGP 408 (415)
T ss_pred ---CCCceEEEEEe-CCCCc--EEEEEECCCCEEEEEcCCCCCCCC
Confidence 89999999986 35677 999999999999999999997644
No 41
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.81 E-value=4e-20 Score=146.01 Aligned_cols=101 Identities=24% Similarity=0.321 Sum_probs=82.0
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
..+|+||||+|+|+|+.+ +||++.+...+.+....++.++.....+.+|++++..+ .++++|+++|.
T Consensus 80 ~~~pilgiC~G~q~l~~~-lGG~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~--------~v~~~H~~~v~---- 146 (188)
T cd01741 80 AGKPVLGICLGHQLLARA-LGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEF--------PVFHWHGDTVV---- 146 (188)
T ss_pred CCCCEEEECccHHHHHHH-hCCEEecCCCcceeEEEEEEeccccccCchhhcCCCcc--------eEEEEeccChh----
Confidence 458999999999999999 99998877665455567787776555677888777654 46999999997
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCC
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE 127 (202)
.+|++++++|++ +. +. +++++.+ .++||+|||||
T Consensus 147 ---~lp~~~~~la~~-~~-~~--v~~~~~~-~~~~g~QfHPE 180 (188)
T cd01741 147 ---ELPPGAVLLASS-EA-CP--NQAFRYG-DRALGLQFHPE 180 (188)
T ss_pred ---hCCCCCEEeecC-CC-CC--cceEEec-CCEEEEccCch
Confidence 599999999997 34 44 8898875 68999999999
No 42
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.81 E-value=8e-20 Score=149.35 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=83.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|+|+|+.+ +||++.+.+....| ..++.++..+..+++|+.+|..+. ++++|++.+.
T Consensus 83 ~~~PvlGIC~G~Qlla~a-lGg~V~~~~~~e~G-~~~v~lt~~g~~d~l~~~~~~~~~--------v~~~H~d~~~---- 148 (235)
T PRK08250 83 AGKAVIGVCLGAQLIGEA-LGAKYEHSPEKEIG-YFPITLTEAGLKDPLLSHFGSTLT--------VGHWHNDMPG---- 148 (235)
T ss_pred cCCCEEEEChhHHHHHHH-hCceeccCCCCcee-EEEEEEccccccCchhhcCCCCcE--------EEEEecceec----
Confidence 479999999999999999 99999877654455 457888877777889988886643 5889998643
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
||++++++|+| +.+. +++++.. .++||+|||||.+.
T Consensus 149 ----lP~~a~~LA~s-~~~~---~qa~~~~-~~~~g~QfHPE~~~ 184 (235)
T PRK08250 149 ----LTDQAKVLATS-EGCP---RQIVQYS-NLVYGFQCHMEFTV 184 (235)
T ss_pred ----CCCCCEEEECC-CCCC---ceEEEeC-CCEEEEeecCcCCH
Confidence 99999999998 6666 6888763 46999999999875
No 43
>KOG0026|consensus
Probab=99.80 E-value=7.1e-20 Score=138.62 Aligned_cols=112 Identities=21% Similarity=0.413 Sum_probs=92.9
Q ss_pred CCcccEEeEcHHHHHHHhhhcCCeeccccCC-ccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeec
Q psy15935 5 GDYFPILGICLGFELLLFVENKEKELRTDCN-CFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRA 83 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~-~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~ 83 (202)
+..+|+||||+|.|+|..+ +||++....+. .||+..+++.- ....-.+|+++|..+. +..+|+..+..+
T Consensus 90 ~~~iP~fGvCMGlQCi~e~-fGGkv~~a~~~i~HGK~S~i~~D-~~~~~G~f~g~~q~~~--------V~RYHSLa~~~s 159 (223)
T KOG0026|consen 90 GPLVPLFGVCMGLQCIGEA-FGGKIVRSPFGVMHGKSSMVHYD-EKGEEGLFSGLSNPFI--------VGRYHSLVIEKD 159 (223)
T ss_pred CCCCceeeeehhhhhhhhh-hCcEEeccCcceeeccccccccC-CccccccccCCCCCeE--------EEeeeeeeeecc
Confidence 5689999999999999999 99999888754 68887777642 1224679999998755 589999999866
Q ss_pred ccccccCC-CcceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccCccccc
Q psy15935 84 TMNSTKLS-DAWDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNSYEWNT 135 (202)
Q Consensus 84 ~~~~~~L~-~~~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~~e~~~ 135 (202)
. || +.++++|+ +.+|. |++.+|+.|. +-|||||||....+.+.
T Consensus 160 S-----lP~d~L~VTaw--TEnG~--iMgaRHkKY~~ieGVQfHPESIlteeGk 204 (223)
T KOG0026|consen 160 S-----FPSDELEVTAW--TEDGL--VMAARHRKYKHIQGVQFHPESIITTEGK 204 (223)
T ss_pred c-----CCccceeeeEe--ccCcE--EEeeeccccccccceeecchhhhhhhhH
Confidence 4 78 88999999 57898 9999999998 99999999998877653
No 44
>KOG3179|consensus
Probab=99.79 E-value=9.5e-20 Score=142.01 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=112.6
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCC---ccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeec
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCN---CFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRA 83 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~---~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~ 83 (202)
++||+|||+|||+|+.+ .||++.+.+.+ ..+...-+... .+..+.|+.+|.++.. ...|++.|-
T Consensus 93 kkkvlGICFGHQiiara-~Gg~Vgra~KG~~~~lg~itivk~~--~~~~~yFG~~~~~l~I--------ikcHqDevl-- 159 (245)
T KOG3179|consen 93 KKKVLGICFGHQIIARA-KGGKVGRAPKGPDLGLGSITIVKDA--EKPEKYFGEIPKSLNI--------IKCHQDEVL-- 159 (245)
T ss_pred ccceEEEeccHHHHHHh-hCCccccCCCCCcccccceEEEEec--ccchhhcccchhhhhH--------Hhhccccee--
Confidence 58999999999999999 99999887765 33332223332 3567899988877543 688999988
Q ss_pred ccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy15935 84 TMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKN 163 (202)
Q Consensus 84 ~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~ 163 (202)
.+|++++++|.| +.+. ++++... ..++++|.|||++..-. ..-.+.+.....+...|.+.|++.
T Consensus 160 -----e~PE~a~llasS-e~ce---ve~fs~~-~~~l~fQGHPEyn~eil------~~ivdrv~~~k~~~eef~~~ak~~ 223 (245)
T KOG3179|consen 160 -----ELPEGAELLASS-EKCE---VEMFSIE-DHLLCFQGHPEYNKEIL------FEIVDRVLGTKLVEEEFAEKAKKT 223 (245)
T ss_pred -----cCCchhhhhccc-cccc---eEEEEec-ceEEEecCCchhhHHHH------HHHHHHHhcchhhHHHHHHHHHHh
Confidence 699999999998 6777 6777653 46999999999974221 112233344467889999999999
Q ss_pred CCCCCChHhhhhhccccc
Q psy15935 164 KHAYPSHADLYKEVIYNY 181 (202)
Q Consensus 164 ~~~f~~~~e~~~~li~n~ 181 (202)
+..+.+...+|..++.||
T Consensus 224 ~En~~~d~~~~~~icKnf 241 (245)
T KOG3179|consen 224 MENPEPDRQLAVSICKNF 241 (245)
T ss_pred hhCCCccHHHHHHHHHHH
Confidence 999999999999999998
No 45
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.79 E-value=5e-19 Score=144.96 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=73.2
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCc-cceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNC-FHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~-~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
.++||||||+|||+|+.+ +||++.+...+. +.+..++.++. .+.++..++. .++++|++.+
T Consensus 85 ~~~PvLGIC~G~Qlla~a-lGG~V~~~~~G~~e~G~~~i~~~~---~~~~~~~~~~----------~~~~~H~d~~---- 146 (239)
T PRK06490 85 ENKPFLGICLGAQMLARH-LGARVAPHPDGRVEIGYYPLRPTE---AGRALMHWPE----------MVYHWHREGF---- 146 (239)
T ss_pred CCCCEEEECHhHHHHHHH-cCCEeecCCCCCCccceEEeEECC---CcccccCCCC----------EEEEECCccc----
Confidence 468999999999999999 999998765442 33345566553 2334444432 3688999883
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
.||++++++|+| +.+. +++++..+ ++||+|||||++.
T Consensus 147 ----~lP~~~~~LA~s-~~~~---~qa~~~~~-~v~g~QfHPE~~~ 183 (239)
T PRK06490 147 ----DLPAGAELLATG-DDFP---NQAFRYGD-NAWGLQFHPEVTR 183 (239)
T ss_pred ----cCCCCCEEEEeC-CCCC---eEEEEeCC-CEEEEeeCccCCH
Confidence 399999999997 4545 78998844 7999999999874
No 46
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.79 E-value=8.8e-19 Score=137.37 Aligned_cols=105 Identities=23% Similarity=0.316 Sum_probs=71.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCee--ccccCCccce-------eeee---eEeccCCCccccccCChhHHHHhhhcceee
Q psy15935 6 DYFPILGICLGFELLLFVENKEKE--LRTDCNCFHE-------NLSL---RFLKNGSKTGLYKTFPKKSLKALAKNNITY 73 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~--~~~~~~~~~~-------~~~i---~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~ 73 (202)
..+|+||||+|||+|...+..+.. .++..+.... ..|. +.+....+++||.++++. ..+|
T Consensus 73 ~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~--------~~~Y 144 (204)
T COG0118 73 SGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDG--------AYFY 144 (204)
T ss_pred cCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccCCChhhcCCCCC--------CEEE
Confidence 349999999999999987555532 3443333221 1121 112112467899988764 4579
Q ss_pred eeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 74 NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 74 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
+.|||++.+. +.-.++++ +++|.+|.++|+. .+++|+||||||+.
T Consensus 145 FVHSY~~~~~--------~~~~v~~~--~~YG~~f~AaV~k--~N~~g~QFHPEKSg 189 (204)
T COG0118 145 FVHSYYVPPG--------NPETVVAT--TDYGEPFPAAVAK--DNVFGTQFHPEKSG 189 (204)
T ss_pred EEEEEeecCC--------CCceEEEe--ccCCCeeEEEEEe--CCEEEEecCcccch
Confidence 9999999851 12246676 4678779999987 57999999999974
No 47
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.79 E-value=9.7e-19 Score=162.78 Aligned_cols=105 Identities=26% Similarity=0.350 Sum_probs=78.9
Q ss_pred CCcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 5 GDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
..++||||||+|||+|+.+ +||++.....+.+|....+.. ....+|.+++. + .++++|++++.+.
T Consensus 84 ~~~iPvLGIClG~QlLa~a-~GG~v~~~~~~~hG~~~~v~~----~~~~lf~gl~~-~--------~v~~~Hs~~v~~~- 148 (742)
T TIGR01823 84 LDEVPVLGICLGFQSLCLA-QGADISRLPTPKHGQVYEMHT----NDAAIFCGLFS-V--------KSTRYHSLYANPE- 148 (742)
T ss_pred cCCCcEEEEchhhHHHHhh-cCCEEEECCCCCcCeEEEEEE----CCccccCCCCC-C--------ceeEEEEEEccCC-
Confidence 3579999999999999999 999998877777776554543 24558888864 3 2589999998642
Q ss_pred cccccCCCc--ceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcc
Q psy15935 85 MNSTKLSDA--WDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYE 132 (202)
Q Consensus 85 ~~~~~L~~~--~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e 132 (202)
.++. +.+++.+ +.++. |+++++++.|+||||||||+...+
T Consensus 149 -----~~~~l~~~~~a~~-~~~~~--i~ai~h~~~pi~GVQFHPE~~~s~ 190 (742)
T TIGR01823 149 -----GIDTLLPLCLTED-EEGII--LMSAQTKKKPWFGVQYHPESCCSE 190 (742)
T ss_pred -----CCCcceEEEEEEc-CCCCe--EEEEEEcCCceEEEEeCcccCCCC
Confidence 3343 4455554 33445 999999999999999999987554
No 48
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.78 E-value=4.6e-19 Score=144.74 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|+|+|+.+ +||++.+... .+.+..++.+++.+..+.++ +++.. ..++++|++.++
T Consensus 82 ~~~PvlGIC~G~Qlla~a-lGg~V~~~~~-~e~G~~~i~~t~~g~~~pl~-~~~~~--------~~~~~~H~d~~~---- 146 (234)
T PRK07053 82 AGLPTLGICLGAQLIARA-LGARVYPGGQ-KEIGWAPLTLTDAGRASPLR-HLGAG--------TPVLHWHGDTFD---- 146 (234)
T ss_pred CCCCEEEECccHHHHHHH-cCCcEecCCC-CeEeEEEEEEeccccCChhh-cCCCc--------ceEEEEeCCEEe----
Confidence 368999999999999999 9999887543 33335678877765555554 45533 346899999875
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
||++.+++|+| +.+. +++++. +.++||+|||||++..
T Consensus 147 ----lP~ga~~La~s-~~~~---~qaf~~-g~~~~g~QfHpE~~~~ 183 (234)
T PRK07053 147 ----LPEGATLLAST-PACR---HQAFAW-GNHVLALQFHPEARED 183 (234)
T ss_pred ----cCCCCEEEEcC-CCCC---eeEEEe-CCCEEEEeeCccCCHH
Confidence 99999999998 5666 688876 3579999999999764
No 49
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.75 E-value=6e-19 Score=144.02 Aligned_cols=120 Identities=21% Similarity=0.246 Sum_probs=73.8
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCc-----cceeeeeeE-eccC-CCcccc----------ccCChhHHH-Hhh
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNC-----FHENLSLRF-LKNG-SKTGLY----------KTFPKKSLK-ALA 67 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~-----~~~~~~i~~-~~~~-~~s~lf----------~~~~~~~~~-~~~ 67 (202)
.++|+||||+|||+|+.+ +||++....... .+...|+.. .... ...+.. .-.+.+.+. .+.
T Consensus 83 ~~~PvlGIClG~Q~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g 161 (235)
T cd01746 83 NNIPFLGICLGMQLAVIE-FARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYG 161 (235)
T ss_pred CCceEEEEEhHHHHHHHH-HHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhC
Confidence 479999999999999999 999864332221 111122211 1000 000000 001112222 222
Q ss_pred hc-ceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEE-EEeeeCCccC
Q psy15935 68 KN-NITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFV-GIQFHPEKNS 130 (202)
Q Consensus 68 ~~-~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~-gvQfHPE~~~ 130 (202)
+. ..+.++|+++|+++.+++ -+..+++++|++ .++|. |+++|.+++|++ |+|||||+..
T Consensus 162 ~~~~~~n~~H~~~v~~~~~~~-~~~~~l~v~a~~-~ddg~--ieaie~~~~pf~lgvQ~HPE~~~ 222 (235)
T cd01746 162 KDEVEERHRHRYEVNPEYVDE-LEEAGLRFSGTD-PDGGL--VEIVELPDHPFFVGTQFHPEFKS 222 (235)
T ss_pred CCEEEEecCcccccCHHHHHH-HhhCCeEEEEEe-CCCCe--EEEEEcCCCCcEEEEECCCCCcC
Confidence 22 357889999998755431 137899999997 34677 999999999976 9999999864
No 50
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.75 E-value=8.1e-18 Score=135.24 Aligned_cols=106 Identities=23% Similarity=0.308 Sum_probs=66.1
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccc----------------eeeeeeEeccCC---CccccccCChhHHHHh
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFH----------------ENLSLRFLKNGS---KTGLYKTFPKKSLKAL 66 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~----------------~~~~i~~~~~~~---~s~lf~~~~~~~~~~~ 66 (202)
.++||||||+|||+|+.. .++.......-.+| .+.++.++.... ++.||++++..
T Consensus 73 ~~~pvlGIClG~Qll~~~-~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~----- 146 (210)
T CHL00188 73 EGNPFIGICLGLHLLFET-SEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLN----- 146 (210)
T ss_pred cCCCEEEECHHHHHHhhc-cccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCC-----
Confidence 468999999999999987 44322111100111 123343332211 14588888765
Q ss_pred hhcceeeeeeeeeEeecccccccCCCcceEeeeeecCCC-ceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 67 AKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNG-KKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 67 ~~~~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~-~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
..++++|++.+.|. +...++.+ +.++ ..++++++. .+++|+|||||++ .+.
T Consensus 147 ---~~v~~~HS~~v~p~---------~~~~l~~t-~~~~~~~~v~a~~~--~~i~GvQFHPE~s-~~~ 198 (210)
T CHL00188 147 ---PWAYFVHSYGVMPK---------SQACATTT-TFYGKQQMVAAIEY--DNIFAMQFHPEKS-GEF 198 (210)
T ss_pred ---CEEEEeCccEecCC---------CCceEEEE-EecCCcceEEEEec--CCEEEEecCCccc-cHh
Confidence 45699999988632 23445554 3343 456999996 5899999999997 444
No 51
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.74 E-value=4e-18 Score=135.00 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=64.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.++||||||+|||+|+.+ +||++.+.. .++.+|++.|.
T Consensus 99 ~~~PilgiC~G~Q~l~~~-~Gg~v~~~~-------------------------------------~v~~~H~~~v~---- 136 (189)
T cd01745 99 RGKPILGICRGMQLLNVA-LGGTLYQDI-------------------------------------RVNSLHHQAIK---- 136 (189)
T ss_pred CCCCEEEEcchHHHHHHH-hCCeEEcCC-------------------------------------ceechHHHHHh----
Confidence 468999999999999999 999975433 13688999886
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecC-CCEEEEeeeCCccCc
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKK-YPFVGIQFHPEKNSY 131 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~-~pi~gvQfHPE~~~~ 131 (202)
.+|++++++|++ .++. |+++++++ .+++|+|||||+...
T Consensus 137 ---~~~~~~~vla~~--~d~~--vea~~~~~~~~~~gvQfHPE~~~~ 176 (189)
T cd01745 137 ---RLADGLRVEARA--PDGV--IEAIESPDRPFVLGVQWHPEWLAD 176 (189)
T ss_pred ---hcCCCCEEEEEC--CCCc--EEEEEeCCCCeEEEEecCCCcCcc
Confidence 589999999995 4455 99999987 689999999999754
No 52
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.73 E-value=2.8e-17 Score=130.95 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=65.0
Q ss_pred cccEEeEcHHHHHHHhhhcCC------------eecccc-----CCccceeeeeeEeccCCCccccccCChhHHHHhhhc
Q psy15935 7 YFPILGICLGFELLLFVENKE------------KELRTD-----CNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKN 69 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg------------~~~~~~-----~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~ 69 (202)
++||||||+|||+|+.+ +++ ++.+.. .+..| ..++.. .+++++|++++++
T Consensus 70 ~~PilGIClG~Qll~~~-~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G-~~~v~~---~~~~~l~~~l~~~-------- 136 (196)
T PRK13170 70 TQPVLGICLGMQLLGER-SEESGGVDCLGIIDGPVKKMTDFGLPLPHMG-WNQVTP---QAGHPLFQGIEDG-------- 136 (196)
T ss_pred CCCEEEECHHHHHHhhh-cccCCCCCCcccccEEEEECCCCCCCCCccc-cceeEe---CCCChhhhCCCcC--------
Confidence 48999999999999998 632 111110 01111 222332 2356788888765
Q ss_pred ceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 70 NITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 70 ~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
..++++|++++. .+..++|++ ..+..++++++. .++||+|||||++. +.+
T Consensus 137 ~~v~~~Hs~~lp----------~~~~~la~s--~~~~~~~~~~~~--~~i~G~QFHPE~~~-~~G 186 (196)
T PRK13170 137 SYFYFVHSYAMP----------VNEYTIAQC--NYGEPFSAAIQK--DNFFGVQFHPERSG-AAG 186 (196)
T ss_pred CEEEEECeeecC----------CCCcEEEEe--cCCCeEEEEEEc--CCEEEEECCCCCcc-ccc
Confidence 457999998754 334578875 445666777665 67999999999984 443
No 53
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.73 E-value=1.5e-17 Score=132.52 Aligned_cols=100 Identities=32% Similarity=0.447 Sum_probs=66.3
Q ss_pred CcccEEeEcHHHHHHHhhh-----------cCCeeccccCC------ccceeeeeeEeccCCCccccccCChhHHHHhhh
Q psy15935 6 DYFPILGICLGFELLLFVE-----------NKEKELRTDCN------CFHENLSLRFLKNGSKTGLYKTFPKKSLKALAK 68 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~-----------~gg~~~~~~~~------~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~ 68 (202)
.++||||||+|+|+|+.++ ++|++.+.... ..| ..++.. ..++.+|++++..
T Consensus 70 ~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G-~~~v~~---~~~~~lf~~l~~~------- 138 (198)
T cd01748 70 SGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMG-WNQLEI---TKESPLFKGIPDG------- 138 (198)
T ss_pred CCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEec-cceEEE---CCCChhhhCCCCC-------
Confidence 4689999999999999973 33554443321 223 223333 2356788888765
Q ss_pred cceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 69 NNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 69 ~~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
..++++|++.+. +++.+.++|++ +. +.++++.. .+.++||+|||||++
T Consensus 139 -~~v~~~Hs~~v~--------~~~~~~~la~s-~~-~~~~~~~~--~~~~i~GvQFHPE~~ 186 (198)
T cd01748 139 -SYFYFVHSYYAP--------PDDPDYILATT-DY-GGKFPAAV--EKDNIFGTQFHPEKS 186 (198)
T ss_pred -CeEEEEeEEEEe--------cCCcceEEEEe-cC-CCeEEEEE--EcCCEEEEECCCccc
Confidence 346999999997 34457788886 33 33444443 346899999999986
No 54
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.72 E-value=1.3e-17 Score=134.00 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=66.0
Q ss_pred CCcccEEeEcHHHHHHHhhh-----------cCCeeccc-c------CCccceeeeeeEeccCCCccccccCChhHHHHh
Q psy15935 5 GDYFPILGICLGFELLLFVE-----------NKEKELRT-D------CNCFHENLSLRFLKNGSKTGLYKTFPKKSLKAL 66 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~-----------~gg~~~~~-~------~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~ 66 (202)
..++||||||+|||+|+.++ ++|++.+. + .+..| ..++.. .+++++|+++|..+
T Consensus 75 ~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G-~~~v~~---~~~~~lf~~~~~~~---- 146 (209)
T PRK13146 75 AAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMG-WNTVDQ---TRDHPLFAGIPDGA---- 146 (209)
T ss_pred hCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccC-hHHeee---CCCChhccCCCCCC----
Confidence 35789999999999999862 34444332 1 11112 223333 23577999887653
Q ss_pred hhcceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 67 AKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 67 ~~~~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
.++++|++.+.+ ++ ...++|++ +.+. . ++++.. +.++||+|||||++
T Consensus 147 ----~v~~~Hs~~v~~-------~~-~~~~la~s-~~~~-~-~~a~~~-~~~i~GvQFHPE~s 193 (209)
T PRK13146 147 ----RFYFVHSYYAQP-------AN-PADVVAWT-DYGG-P-FTAAVA-RDNLFATQFHPEKS 193 (209)
T ss_pred ----EEEEEeEEEEEc-------CC-CCcEEEEE-cCCC-E-EEEEEe-cCCEEEEEcCCccc
Confidence 469999999973 33 45888886 3333 3 344443 36899999999986
No 55
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.72 E-value=2.7e-17 Score=131.81 Aligned_cols=101 Identities=26% Similarity=0.329 Sum_probs=67.3
Q ss_pred CcccEEeEcHHHHHHHhhh-----------cCCeeccccCC-----ccceeeeeeEeccCCCccccccCChhHHHHhhhc
Q psy15935 6 DYFPILGICLGFELLLFVE-----------NKEKELRTDCN-----CFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKN 69 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~-----------~gg~~~~~~~~-----~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~ 69 (202)
.++||||||+|+|+|+.+. ++|++.+...+ .+....++..+ ..++||+.++..+
T Consensus 71 ~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~---~~~~l~~~l~~~~------- 140 (205)
T PRK13141 71 SGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELK---KESPLLKGIPDGA------- 140 (205)
T ss_pred CCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeC---CCChhhhCCCCCC-------
Confidence 4589999999999999862 33555443311 12122334433 3678888887553
Q ss_pred ceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 70 NITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 70 ~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
.++.+|++++. +++++.++|.+ +. +.+ ++++.. +.++||+|||||+.
T Consensus 141 -~v~~~Hs~~v~--------~~~~~~v~a~~-~~-~~~-~~a~~~-~~~i~GvQfHPE~~ 187 (205)
T PRK13141 141 -YVYFVHSYYAD--------PCDEEYVAATT-DY-GVE-FPAAVG-KDNVFGAQFHPEKS 187 (205)
T ss_pred -EEEEECeeEec--------cCCcCeEEEEE-eC-CcE-EEEEEe-cCCEEEEeCCCccc
Confidence 35889999986 56678899986 43 333 455544 45899999999985
No 56
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.72 E-value=1.7e-17 Score=132.42 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=66.8
Q ss_pred CcccEEeEcHHHHHHHhhh----------cCCeeccccC-----CccceeeeeeEeccCCCccccccCChhHHHHhhhcc
Q psy15935 6 DYFPILGICLGFELLLFVE----------NKEKELRTDC-----NCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNN 70 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~----------~gg~~~~~~~-----~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~ 70 (202)
.++||||||+|+|+|+.++ +++++.+.+. +..| ..++.. ..+++||+.++.. .
T Consensus 71 ~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G-~~~v~~---~~~~~lf~~l~~~--------~ 138 (199)
T PRK13181 71 KKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMG-WNSVKP---LKESPLFKGIEEG--------S 138 (199)
T ss_pred CCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccC-cccccc---CCCChhHcCCCCC--------C
Confidence 4689999999999999973 2334433221 1122 222332 2356788888765 3
Q ss_pred eeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 71 ITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 71 ~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
.++++|++.+.+ .+ ...++|++ + .+..|+++++. .++||+|||||+.
T Consensus 139 ~~~~~Hs~~v~~-------~~-~~~~lA~s-~-~~~~~~~~~~~--~~i~GvQFHPE~~ 185 (199)
T PRK13181 139 YFYFVHSYYVPC-------ED-PEDVLATT-E-YGVPFCSAVAK--DNIYAVQFHPEKS 185 (199)
T ss_pred EEEEeCeeEecc-------CC-cccEEEEE-c-CCCEEEEEEEC--CCEEEEECCCccC
Confidence 468999999863 33 34688886 3 35666777775 5799999999986
No 57
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.70 E-value=1e-16 Score=128.83 Aligned_cols=104 Identities=26% Similarity=0.342 Sum_probs=62.8
Q ss_pred CcccEEeEcHHHHHHHhhhcC------------------Ceecccc----CCccceeeeeeEeccCCCccccccCChhHH
Q psy15935 6 DYFPILGICLGFELLLFVENK------------------EKELRTD----CNCFHENLSLRFLKNGSKTGLYKTFPKKSL 63 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~g------------------g~~~~~~----~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~ 63 (202)
.++||||||+|||+|+.+ ++ |++.+.+ ...|..+.++..+. ...+++|.+++..
T Consensus 71 ~~~pilGiC~G~Q~l~~~-~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~~~~lf~~l~~~-- 146 (210)
T PRK14004 71 SGKPLFGICIGFQILFES-SEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRR-KDKSKLLKGIGDQ-- 146 (210)
T ss_pred cCCCEEEECHhHHHHHHh-cccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceecc-CCCCccccCCCCC--
Confidence 578999999999999997 43 1111110 00111223333322 2456789988765
Q ss_pred HHhhhcceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 64 KALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 64 ~~~~~~~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
..+|++|++.+.+ +....+++.+ +.++..|.+.+ .+.++||+|||||++.
T Consensus 147 ------~~v~~~HS~~~~~--------~~~l~~sa~~-~~~g~~~~a~~--~~~~i~GvQFHPE~s~ 196 (210)
T PRK14004 147 ------SFFYFIHSYRPTG--------AEGNAITGLC-DYYQEKFPAVV--EKENIFGTQFHPEKSH 196 (210)
T ss_pred ------CEEEEeceeecCC--------CCcceEEEee-eECCEEEEEEE--ecCCEEEEeCCcccCc
Confidence 4579999986531 2223455554 33254444444 3578999999999986
No 58
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.70 E-value=1.1e-16 Score=127.79 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=66.4
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccc-cCCccceeeeeeEeccC--------CCccccccCChhHHHHhhhcceeeeee
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRT-DCNCFHENLSLRFLKNG--------SKTGLYKTFPKKSLKALAKNNITYNYH 76 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~-~~~~~~~~~~i~~~~~~--------~~s~lf~~~~~~~~~~~~~~~~~~~~H 76 (202)
.++||||||+|+|+|+.+ +||..+.. .....| ..+...++.. ..+.+|.+++..+ .++++|
T Consensus 76 ~~~pilGIC~G~Qll~~~-~gg~~v~~~~~~~lG-~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~H 145 (200)
T PRK13527 76 EGLPILGTCAGLILLAKE-VGDDRVTKTEQPLLG-LMDVTVKRNAFGRQRDSFEAEIDLSGLDGPF--------HAVFIR 145 (200)
T ss_pred CCCeEEEECHHHHHHHhh-hcCCccCCCCCceee-eeEEEEeeccccCccccEEEeEeccccCCcc--------eEEEEc
Confidence 468999999999999999 88853322 222233 2333332211 0123455555443 458899
Q ss_pred eeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 77 IWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 77 ~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
++.+. .+|++++++|++ .++. .+++. .++||+|||||.+
T Consensus 146 ~~~v~-------~lp~~~~~la~~--~~~~---~a~~~--~~~~g~QfHPE~~ 184 (200)
T PRK13527 146 APAIT-------KVGGDVEVLAKL--DDRI---VAVEQ--GNVLATAFHPELT 184 (200)
T ss_pred ccccc-------ccCCCeEEEEEE--CCEE---EEEEE--CCEEEEEeCCCCC
Confidence 99987 599999999986 3443 35554 5799999999976
No 59
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.69 E-value=1.3e-16 Score=127.60 Aligned_cols=100 Identities=29% Similarity=0.399 Sum_probs=65.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCC-----------eeccccC-----CccceeeeeeEeccCCCccccccCChhHHHHhhhc
Q psy15935 6 DYFPILGICLGFELLLFVENKE-----------KELRTDC-----NCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKN 69 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg-----------~~~~~~~-----~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~ 69 (202)
.++||||||+|||+|+.++.+| ++.+... ..+....+++. ..++++|+.++..+
T Consensus 72 ~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~---~~~~~l~~~l~~~~------- 141 (201)
T PRK13152 72 QKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEI---LKQSPLYQGIPEKS------- 141 (201)
T ss_pred CCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEE---CCCChhhhCCCCCC-------
Confidence 5799999999999999863332 2322110 01223334443 24677888887543
Q ss_pred ceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 70 NITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 70 ~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
.++++|++++.. ++ ..+++.+ .++..++++++. .++||+|||||++
T Consensus 142 -~~~~vHS~~v~~-------~~--~~v~a~~--~~g~~~~~a~~~--~~i~GvQFHPE~~ 187 (201)
T PRK13152 142 -DFYFVHSFYVKC-------KD--EFVSAKA--QYGHKFVASLQK--DNIFATQFHPEKS 187 (201)
T ss_pred -eEEEEcccEeec-------CC--CcEEEEE--CCCCEEEEEEec--CCEEEEeCCCeec
Confidence 458999999973 33 3566764 345455778874 5799999999986
No 60
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.69 E-value=1.8e-16 Score=125.59 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=63.5
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEecc--------CCCccccccCChhHHHHhhhcceeeeeee
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKN--------GSKTGLYKTFPKKSLKALAKNNITYNYHI 77 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~--------~~~s~lf~~~~~~~~~~~~~~~~~~~~H~ 77 (202)
.++||||||+|+|+|+.+ +||.. ...-|. .++..... ...+.++.++++. ..++++|+
T Consensus 71 ~g~PilGIC~G~QlL~~~-~gg~~----~~~lg~-~~~~v~~~~~g~~~g~~~~~~~~~~~~~~--------~~~~~~H~ 136 (189)
T PRK13525 71 SGLPVFGTCAGMILLAKE-IEGYE----QEHLGL-LDITVRRNAFGRQVDSFEAELDIKGLGEP--------FPAVFIRA 136 (189)
T ss_pred CCCeEEEECHHHHHHHhh-cccCC----CCceee-EEEEEEEccCCCceeeEEecccccCCCCC--------eEEEEEeC
Confidence 458999999999999999 88741 111110 11111100 0123345554432 35699999
Q ss_pred eeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 78 WCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 78 ~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
+.|. .||++++++|+| + .. +.+++. .++||+|||||+..
T Consensus 137 d~v~-------~lp~~~~vlA~~-~-~~---~~~~~~--~~~~g~QfHPE~~~ 175 (189)
T PRK13525 137 PYIE-------EVGPGVEVLATV-G-GR---IVAVRQ--GNILATSFHPELTD 175 (189)
T ss_pred ceee-------ccCCCcEEEEEc-C-CE---EEEEEe--CCEEEEEeCCccCC
Confidence 9997 599999999996 3 23 456664 48999999999864
No 61
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.68 E-value=3e-16 Score=125.33 Aligned_cols=100 Identities=24% Similarity=0.354 Sum_probs=64.1
Q ss_pred CcccEEeEcHHHHHHHhhh-----------cCCeeccccC---CccceeeeeeEeccCCCccccccCChhHHHHhhhcce
Q psy15935 6 DYFPILGICLGFELLLFVE-----------NKEKELRTDC---NCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNI 71 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~-----------~gg~~~~~~~---~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~ 71 (202)
.++||||||+|+|+|+.++ +||++..... ..+....++..+ .++++|++++.. .
T Consensus 70 ~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~---~~~~l~~~l~~~---------~ 137 (200)
T PRK13143 70 SGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV---KDCPLFEGIDGE---------Y 137 (200)
T ss_pred cCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc---CCChhhccCCCc---------E
Confidence 4589999999999999852 3444433211 011122334332 356778776432 2
Q ss_pred eeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 72 TYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 72 ~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
++.+|++.+. ++++..++|++ +++..++++++. .++||+|||||+.
T Consensus 138 ~~~~Hs~~~~--------~~~~~~~la~~--~~~~~~~~~~~~--~~~~gvQfHPE~~ 183 (200)
T PRK13143 138 VYFVHSYYAY--------PDDEDYVVATT--DYGIEFPAAVCN--DNVFGTQFHPEKS 183 (200)
T ss_pred EEEEeeeeeC--------CCCcceEEEEE--cCCCEEEEEEEc--CCEEEEeCCCccc
Confidence 4789999886 45567899986 344444555553 5999999999986
No 62
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.68 E-value=1.3e-16 Score=126.98 Aligned_cols=99 Identities=26% Similarity=0.360 Sum_probs=64.1
Q ss_pred CcccEEeEcHHHHHHHhhh-----------cCCeecccc---CCccceeeeeeEeccCCCccccccCChhHHHHhhhcce
Q psy15935 6 DYFPILGICLGFELLLFVE-----------NKEKELRTD---CNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNI 71 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~-----------~gg~~~~~~---~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~ 71 (202)
.++||||||+|+|+|+.+. +||++.+.. .+..+. ..+. ....++||+.++.. ..
T Consensus 70 ~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~-~~~~---~~~~~~l~~~l~~~--------~~ 137 (196)
T TIGR01855 70 LGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGW-NEVH---PVKESPLLNGIDEG--------AY 137 (196)
T ss_pred CCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccC-eeee---eCCCChHHhCCCCC--------CE
Confidence 4689999999999999973 244444332 112221 1122 23456788888765 34
Q ss_pred eeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 72 TYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 72 ~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
++++|++.+++ .+ + .+++.+ + ++..+++..+. .++||+|||||++
T Consensus 138 v~~~Hs~~v~~-------~~-~-~~~a~~-~-~g~~~~~~~~~--~~i~GvQFHPE~~ 182 (196)
T TIGR01855 138 FYFVHSYYAVC-------EE-E-AVLAYA-D-YGEKFPAAVQK--GNIFGTQFHPEKS 182 (196)
T ss_pred EEEECeeEecC-------CC-C-cEEEEE-c-CCcEEEEEEec--CCEEEEECCCccC
Confidence 69999999973 33 3 356654 3 45555665554 6799999999986
No 63
>KOG1622|consensus
Probab=99.68 E-value=3.7e-17 Score=140.46 Aligned_cols=138 Identities=18% Similarity=0.285 Sum_probs=100.3
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMN 86 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~ 86 (202)
.+||||||+|||+|+.. +||.+.+......|.. .+.. .....||+++..... ..++..|++.+.
T Consensus 88 ~vpvLGICYGmQ~i~~~-~Gg~V~~~~~RE~G~~-eI~v---~~~~~lF~~~~~~~~------~~VlltHgdsl~----- 151 (552)
T KOG1622|consen 88 GVPVLGICYGMQLINKL-NGGTVVKGMVREDGED-EIEV---DDSVDLFSGLHKTEF------MTVLLTHGDSLS----- 151 (552)
T ss_pred CCcceeehhHHHHHHHH-hCCccccccccCCCCc-eEEc---Cchhhhhhhhcccce------eeeeeccccchh-----
Confidence 48999999999999999 9999988776666632 2332 224458887754321 136889999988
Q ss_pred cccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q psy15935 87 STKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHA 166 (202)
Q Consensus 87 ~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~~~~ 166 (202)
+++++|++.|+| .+.. ++++.+...++||+|||||.....-+. +.+.||..+.|....|.
T Consensus 152 --~v~~g~kv~a~s--~n~~--va~i~~e~kkiyglqfhpEV~~t~~g~--------------~ll~nFl~~vc~~~~n~ 211 (552)
T KOG1622|consen 152 --KVPEGFKVVAFS--GNKP--VAGILNELKKIYGLQFHPEVTLTPNGK--------------ELLKNFLFDVCGCSGNF 211 (552)
T ss_pred --hccccceeEEee--cCcc--eeeehhhhhhhhcCCCCCcccccCchh--------------HHHHHHHHHHcCCccCc
Confidence 699999999997 3444 789998888999999999987665443 66888998999877654
Q ss_pred -CCChHhhhhhcccc
Q psy15935 167 -YPSHADLYKEVIYN 180 (202)
Q Consensus 167 -f~~~~e~~~~li~n 180 (202)
..+.+++.-.-|+.
T Consensus 212 tmenre~e~I~~i~k 226 (552)
T KOG1622|consen 212 TMENREEECINEIRK 226 (552)
T ss_pred chhhhhHHHHHHHHH
Confidence 33444433233443
No 64
>PRK06186 hypothetical protein; Validated
Probab=99.67 E-value=9e-17 Score=129.85 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=39.6
Q ss_pred eeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccC
Q psy15935 73 YNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNS 130 (202)
Q Consensus 73 ~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~ 130 (202)
-+-|+|.|.+..-+. -...+++++|++ .||. |+++|.++.| ++|||||||+..
T Consensus 157 rhrHryeVNs~h~q~-i~~~GL~vsa~s--~DG~--iEaiE~~~hpf~lGVQwHPE~~s 210 (229)
T PRK06186 157 GYHCRYGVNPEFVAA-LESGDLRVTGWD--EDGD--VRAVELPGHPFFVATLFQPERAA 210 (229)
T ss_pred eccccEEECHHHHHH-HhcCCeEEEEEc--CCCC--EEEEEeCCCCcEEEEeCCCCccC
Confidence 455677777533222 137899999995 5677 9999998888 679999999864
No 65
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.64 E-value=4.6e-16 Score=138.45 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=75.5
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeec-cccC-C-cc--ceeeee-eEeccCC-----Ccccc-c-----cCChhHHHH-hh
Q psy15935 6 DYFPILGICLGFELLLFVENKEKEL-RTDC-N-CF--HENLSL-RFLKNGS-----KTGLY-K-----TFPKKSLKA-LA 67 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~-~~~~-~-~~--~~~~~i-~~~~~~~-----~s~lf-~-----~~~~~~~~~-~~ 67 (202)
.++|+||||+|||+|+.+ +||++. .... . .. +...|+ .+..... ...|- . -.+.+.+.. +.
T Consensus 371 ~~iPiLGIClGmQll~va-~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l~~iyg 449 (533)
T PRK05380 371 NNIPFLGICLGMQLAVIE-FARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYG 449 (533)
T ss_pred CCCcEEEEchHHHHHHHH-hcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCCChHHHHhC
Confidence 579999999999999999 999863 1111 0 00 001111 1110000 00000 0 001111111 11
Q ss_pred hc-ceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEE-EEeeeCCccCcccccccCCCCCHHH
Q psy15935 68 KN-NITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFV-GIQFHPEKNSYEWNTVAHVNHSRIA 145 (202)
Q Consensus 68 ~~-~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~-gvQfHPE~~~~e~~~~~~~~h~~~~ 145 (202)
+. ..--+.|++.|.+..-+..+ ..+++++|++ .+++. |+++|.+++|++ |+|||||+......
T Consensus 450 ~~~i~ErhrHryeVNs~h~qal~-~~GL~vsa~s-~Dggl--VEaIEl~~hpfflGVQwHPE~~s~p~~----------- 514 (533)
T PRK05380 450 KEEIYERHRHRYEVNNKYREQLE-KAGLVFSGTS-PDGRL--VEIVELPDHPWFVGVQFHPEFKSRPRR----------- 514 (533)
T ss_pred CCceeeecccceecCHHHHHHHh-hcCeEEEEEc-CCCCc--EEEEEeCCCCEEEEEeCCCCCCCCCCc-----------
Confidence 11 11245677777754322111 2489999996 34456 999999999954 99999998642221
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy15935 146 IETSRLFYDWIVTEASKN 163 (202)
Q Consensus 146 ~~~~~~~~~~f~~~ar~~ 163 (202)
...+...|+++|++.
T Consensus 515 ---~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 515 ---PHPLFAGFVKAALEN 529 (533)
T ss_pred ---hHHHHHHHHHHHHHH
Confidence 134666678888753
No 66
>PLN02327 CTP synthase
Probab=99.62 E-value=1.8e-15 Score=135.01 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=82.1
Q ss_pred CCcccEEeEcHHHHHHHhhhcCCeec-cccCC--c--cceeeee-eEeccC----CCccc-ccc----C--ChhH-HHHh
Q psy15935 5 GDYFPILGICLGFELLLFVENKEKEL-RTDCN--C--FHENLSL-RFLKNG----SKTGL-YKT----F--PKKS-LKAL 66 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~~gg~~~-~~~~~--~--~~~~~~i-~~~~~~----~~s~l-f~~----~--~~~~-~~~~ 66 (202)
..++|+||||+|||+|+.+ +++.+. +.... . .....|+ .+.++. ..+.| ++. + +... ...+
T Consensus 389 e~~iP~LGIClGmQl~vie-faRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iY 467 (557)
T PLN02327 389 ENKVPYLGICLGMQIAVIE-FARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLY 467 (557)
T ss_pred HcCCCEEEEcHHHHHHHHH-HHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCCCHHHHHh
Confidence 3579999999999999998 877532 21111 0 0112222 222111 11112 100 1 1111 2222
Q ss_pred hhcc--eeeeeeeeeEeecccccccC-CCcceEeeeeecCCCceeEEEEeecCCCEE-EEeeeCCccCcccccccCCCCC
Q psy15935 67 AKNN--ITYNYHIWCITRATMNSTKL-SDAWDILTESKAGNGKKFVSTVQSKKYPFV-GIQFHPEKNSYEWNTVAHVNHS 142 (202)
Q Consensus 67 ~~~~--~~~~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~~~v~~i~~~~~pi~-gvQfHPE~~~~e~~~~~~~~h~ 142 (202)
.+.. ...+.|+|+|.++..+ .| ..+++++|++ .+++. |+++|.+++|++ |+|||||+...... +
T Consensus 468 g~~~~VnerHrHRYeVN~q~v~--~le~~gL~vsa~s-~dg~~--IEaiE~~~~pffvGVQfHPE~~s~p~~-----~-- 535 (557)
T PLN02327 468 GNVSFVDERHRHRYEVNPEMVP--RLEKAGLSFVGKD-ETGRR--MEIVELPSHPFFVGVQFHPEFKSRPGK-----P-- 535 (557)
T ss_pred CCccceeeeeccccccCHHHHH--HHhhcCcEEEEEc-CCCCE--EEEEEeCCCCEEEEEEcCCCCCCCCCC-----c--
Confidence 2222 3567788999876543 35 5889999997 34445 999999999976 99999998643221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Q psy15935 143 RIAIETSRLFYDWIVTEASKNKH 165 (202)
Q Consensus 143 ~~~~~~~~~~~~~f~~~ar~~~~ 165 (202)
+.+...|+++|.++..
T Consensus 536 -------~pLF~~Fv~Aa~~~~~ 551 (557)
T PLN02327 536 -------SPLFLGLIAAASGQLD 551 (557)
T ss_pred -------hHHHHHHHHHHHHhHH
Confidence 3467777777766443
No 67
>KOG1224|consensus
Probab=99.61 E-value=1.4e-15 Score=133.02 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=84.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
+.+||||||+|||.|+.+ -|..+.....+.||....++......-+.++.+.+..+. +..||+..+.+
T Consensus 94 ~~iPilGICLGfQal~l~-hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK--------~~RYHSL~in~--- 161 (767)
T KOG1224|consen 94 RDIPILGICLGFQALGLV-HGAHVVHANEPVHGRVSGIEHDGNILFSGIPSGRNSDFK--------VVRYHSLIINS--- 161 (767)
T ss_pred CCCceeeeehhhHhHhhh-cccceecCCCcccceeeeEEecCcEEEccCCCCCcccce--------eEEeEEEEecC---
Confidence 479999999999999998 999988778888997766665433334555555555554 48999999984
Q ss_pred ccccCCC-cceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 86 NSTKLSD-AWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 86 ~~~~L~~-~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
+|- -+.+++++.|++| -.++++.+++.|.||+|||||....+.+
T Consensus 162 ----~pid~l~il~t~~ddng-~ilMsi~~~~fPhfG~qyHPES~~s~~g 206 (767)
T KOG1224|consen 162 ----LPIDLLPILWTIYDDNG-HILMSIMHSSFPHFGLQYHPESIASTYG 206 (767)
T ss_pred ----CchhhhcceeEeecCCc-eEEEEeeccCCCccceeeChHHhhhhhh
Confidence 443 3456777644444 4589999999999999999999877654
No 68
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.60 E-value=3.8e-15 Score=132.58 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=69.8
Q ss_pred CcccEEeEcHHHHHHHhhhcCCeeccccCCcc-----ceeeeee-EeccCC-----Cccccc------cCChhHHH-Hhh
Q psy15935 6 DYFPILGICLGFELLLFVENKEKELRTDCNCF-----HENLSLR-FLKNGS-----KTGLYK------TFPKKSLK-ALA 67 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~-----~~~~~i~-~~~~~~-----~s~lf~------~~~~~~~~-~~~ 67 (202)
.++|+||||+|||+|+.+ +|+++.......+ +...|+. +..... .+.|-- -.+.+.+. .+.
T Consensus 371 ~~iP~LGIClG~Qll~i~-~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG 449 (525)
T TIGR00337 371 NNIPFLGICLGMQLAVIE-FARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYG 449 (525)
T ss_pred cCCCEEEEcHHHHHHHHH-HHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChHHHHhC
Confidence 469999999999999999 8887543221111 2223332 111100 000000 01111111 122
Q ss_pred hcc-eeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEE-EEeeeCCccC
Q psy15935 68 KNN-ITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFV-GIQFHPEKNS 130 (202)
Q Consensus 68 ~~~-~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~-gvQfHPE~~~ 130 (202)
+.. ..-+.|++.|.+...+.. ...+++++|++ .+++. |+++|.+++|++ |||||||+..
T Consensus 450 ~~~i~erhrHry~VNs~h~q~l-~~~GL~vsa~s-~Dgg~--VEaIE~~~hpfflGVQwHPE~~s 510 (525)
T TIGR00337 450 KEEVYERHRHRYEVNNEYREQL-ENKGLIVSGTS-PDGRL--VEIIELPDHPFFVACQFHPEFTS 510 (525)
T ss_pred CCceeecccceEEECHHHHHhh-hhCCeEEEEEE-CCCCE--EEEEEECCCCeEEEEecCCCCCC
Confidence 221 345778888886543221 13789999997 44467 999999999965 9999999864
No 69
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.57 E-value=7e-15 Score=115.89 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred CcccEEeEcHHHHHHHhhhcCCe------------eccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceee
Q psy15935 6 DYFPILGICLGFELLLFVENKEK------------ELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITY 73 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~------------~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~ 73 (202)
..+||||||+|+|+|+.+ +|+. +.+...+....+...++ .+..++. +...++
T Consensus 68 ~g~PvlGiC~G~qlL~~~-~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l--------~~~~~~~-------~~~~~~ 131 (183)
T cd01749 68 AGKPVFGTCAGLILLAKE-VEDQGGQPLLGLLDITVRRNAFGRQVDSFEADL--------DIPGLGL-------GPFPAV 131 (183)
T ss_pred cCCeEEEECHHHHHHHHH-hcccCCCCccCceeEEEEeeccccccceEEEcC--------CCCcCCC-------CccEEE
Confidence 468999999999999999 7763 11111111111111111 1222210 123458
Q ss_pred eeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 74 NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 74 ~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
..|.+.|. .+|++++++|.| + .. +.+++. .++||+|||||.+.
T Consensus 132 ~~h~~~v~-------~~p~~~~~la~~-~-~~---~~a~~~--~~~~g~qfHPE~~~ 174 (183)
T cd01749 132 FIRAPVIE-------EVGPGVEVLAEY-D-GK---IVAVRQ--GNVLATSFHPELTD 174 (183)
T ss_pred EEECcEEE-------EcCCCcEEEEec-C-CE---EEEEEE--CCEEEEEcCCccCC
Confidence 89999887 599999999996 3 23 346765 36999999999873
No 70
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.54 E-value=2.6e-14 Score=113.12 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=57.8
Q ss_pred CcccEEeEcHHHHHHHhhhcCCe-eccccCCccceeee--eeEeccCC-----CccccccCChhHHHHhhhcceeeeeee
Q psy15935 6 DYFPILGICLGFELLLFVENKEK-ELRTDCNCFHENLS--LRFLKNGS-----KTGLYKTFPKKSLKALAKNNITYNYHI 77 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~-~~~~~~~~~~~~~~--i~~~~~~~-----~s~lf~~~~~~~~~~~~~~~~~~~~H~ 77 (202)
.++||||||+|||+|+..+..|. ..++..+....+.+ +.+...++ ..++|+ ..+|+.|+
T Consensus 69 ~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~~~~l~~-------------~~~yFVhS 135 (192)
T PRK13142 69 TDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVSKHPMLN-------------QDVYFVHS 135 (192)
T ss_pred CCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCCCCcccc-------------cEEEEECC
Confidence 46899999999999999842332 23333332222111 00000011 111111 35799999
Q ss_pred eeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 78 WCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 78 ~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
+++. .++ .+++++ ..+..++++++. .+++|+|||||++.
T Consensus 136 y~v~--------~~~--~v~~~~--~yg~~~~~~v~~--~n~~g~QFHPEkS~ 174 (192)
T PRK13142 136 YQAP--------MSE--NVIAYA--QYGADIPAIVQF--NNYIGIQFHPEKSG 174 (192)
T ss_pred CeEC--------CCC--CEEEEE--ECCCeEEEEEEc--CCEEEEecCcccCc
Confidence 9983 122 355664 335567888875 67999999999974
No 71
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.54 E-value=5.4e-14 Score=126.73 Aligned_cols=102 Identities=25% Similarity=0.312 Sum_probs=62.6
Q ss_pred CcccEEeEcHHHHHHHhhhc--CCeeccccCC--------------ccceeeeeeEeccCCCccccccCChhHHHHhhhc
Q psy15935 6 DYFPILGICLGFELLLFVEN--KEKELRTDCN--------------CFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKN 69 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~--gg~~~~~~~~--------------~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~ 69 (202)
..+|+||||+|||+|+.++. |+...+...+ .+..+.++.. ...++||.+++.
T Consensus 78 ~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~---~~~spL~~~l~~--------- 145 (538)
T PLN02617 78 NDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQI---TKDSELLDGVGG--------- 145 (538)
T ss_pred cCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEe---cCCChhHhcCCC---------
Confidence 36899999999999998621 2211111111 0111233332 235678877642
Q ss_pred ceeeeeeeeeEeecccccccCCCcc-eEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 70 NITYNYHIWCITRATMNSTKLSDAW-DILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 70 ~~~~~~H~~~v~~~~~~~~~L~~~~-~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
..++++|++.+.+ ++... .+++++ .++..+|++++. .++||+|||||++.
T Consensus 146 ~~vy~vHSy~v~~-------~p~~~~~v~a~~--~~g~~~IaAI~~--gnI~GVQFHPE~s~ 196 (538)
T PLN02617 146 RHVYFVHSYRATP-------SDENKDWVLATC--NYGGEFIASVRK--GNVHAVQFHPEKSG 196 (538)
T ss_pred cEEEEEeEEEEEe-------cCCCCcEEEEEE--ccCCCcEEEEEe--CCEEEEEcCCccCc
Confidence 2468999999763 44333 344543 333346999997 48999999999964
No 72
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.51 E-value=5.2e-14 Score=118.30 Aligned_cols=105 Identities=21% Similarity=0.146 Sum_probs=76.1
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccC-CccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDC-NCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATM 85 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~-~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~ 85 (202)
.+|+||||+|+|+++.+ +||....... ...| ..+...+. ..++|++++++.+.+ .+.|...|..+..
T Consensus 135 ~~s~LgICwGaQa~a~a-lgGi~k~~~~~K~~G-v~~~~~~~--~~~pL~~g~~d~F~~--------phSr~~~V~~~~i 202 (302)
T PRK05368 135 VTSTLFICWAAQAALYH-LYGIPKYTLPEKLSG-VFEHRVLD--PHHPLLRGFDDSFLV--------PHSRYTEVREEDI 202 (302)
T ss_pred CCCEEEEcHHHHHHHHH-cCCCccCCCCCceeE-EEEEEEcC--CCChhhcCCCCcccc--------ceeehhhccHHHh
Confidence 58999999999999999 9995221111 1233 23333332 367899999987764 6777777753332
Q ss_pred ccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 86 NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 86 ~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
.++++++++|.| +.+| +.++..++..++++|+|||+..
T Consensus 203 ---~~~~~l~vLA~S-~~~g---v~~~~~~~~r~~~vQgHPEYd~ 240 (302)
T PRK05368 203 ---RAATGLEILAES-EEAG---VYLFASKDKREVFVTGHPEYDA 240 (302)
T ss_pred ---ccCCCCEEEecC-CCCC---eEEEEeCCCCEEEEECCCCCCH
Confidence 478999999998 6788 6788776778999999999974
No 73
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.49 E-value=1.4e-13 Score=108.54 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=34.2
Q ss_pred eeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCcc
Q psy15935 73 YNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKN 129 (202)
Q Consensus 73 ~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~ 129 (202)
...|...|. .+|++++++|++ + + . +.+++. .++||+|||||++
T Consensus 131 ~~~h~~~v~-------~lp~~~~vla~~-~-~-~--~~a~~~--~~~~gvQfHPE~~ 173 (184)
T TIGR03800 131 VFIRAPKIV-------SVGNGVEILAKV-G-N-R--IVAVRQ--GNILVSSFHPELT 173 (184)
T ss_pred EEEcCCCcc-------cCCCCeEEEEEe-C-C-e--eEEEEe--CCEEEEEeCCccC
Confidence 478888887 599999999996 3 3 3 556664 4799999999986
No 74
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.47 E-value=3.9e-14 Score=115.29 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=74.6
Q ss_pred CcccEEeEcHHHHHHHhh-hcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 6 DYFPILGICLGFELLLFV-ENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~-~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
.++||+|||.|+|+|+.+ .++|.+.......++ ...+.+......+.+++.+++.... .-+..+.-+++.++++.
T Consensus 77 ~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~-~~~~~~~v~~~~~~~~~~~~~g~~~---~~pi~H~eG~y~~~~~~ 152 (227)
T TIGR01737 77 KGVPVLGICNGFQILVEAGLLPGALLPNDSLRFI-CRWVYLRVENADTIFTKNYKKGEVI---RIPIAHGEGRYYADDET 152 (227)
T ss_pred cCCEEEEECHHHHHHHHcCCCCCceeecCCCceE-EEeEEEEECCCCChhhccCCCCCEE---EEEeEcCCcCeEcCHHH
Confidence 468999999999999984 377876655443322 2334443233456677777642110 00122333455555443
Q ss_pred cccccCCCcceEeeeeec----------CCC-ceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 85 MNSTKLSDAWDILTESKA----------GNG-KKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~----------~~~-~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
++ +|.+...|+..-.| .+| ...|+++++++++++|+|||||+....|
T Consensus 153 l~--~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~ 210 (227)
T TIGR01737 153 LA--RLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKL 210 (227)
T ss_pred HH--HHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccc
Confidence 32 46555565554323 222 3469999999999999999999987665
No 75
>KOG0370|consensus
Probab=99.41 E-value=4.8e-13 Score=123.51 Aligned_cols=119 Identities=25% Similarity=0.434 Sum_probs=90.1
Q ss_pred ccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccccc
Q psy15935 8 FPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMNS 87 (202)
Q Consensus 8 ~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~~ 87 (202)
.||+|||+|||+|+.+ .|++..+...+.+|.+.|..... ...- ..+-++|.|++.+..
T Consensus 241 ~PvfGIClGHQllA~A-aGakT~KmKyGNRGhNiP~~~~~---tGrc---------------~ITSQNHGYAVD~~t--- 298 (1435)
T KOG0370|consen 241 VPVFGICLGHQLLALA-AGAKTYKMKYGNRGHNIPCTCRA---TGRC---------------FITSQNHGYAVDPAT--- 298 (1435)
T ss_pred CCeEEEehhhHHHHHh-hCCceEEeeccccCCCccceecc---CceE---------------EEEecCCceeecccc---
Confidence 9999999999999999 99999998888888777764321 1111 234689999999876
Q ss_pred ccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy15935 88 TKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHAY 167 (202)
Q Consensus 88 ~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~~~~~f~~~ar~~~~~f 167 (202)
||.+|+.+-++. .++. =+++.|...|++.+|||||..+.. |+ ..++.+-|++..++.+..-
T Consensus 299 --Lp~gWk~lFvN~-NDgS--NEGI~Hss~P~fSvQFHPEat~GP--------~D------TeyLFDiFi~lvkk~kst~ 359 (1435)
T KOG0370|consen 299 --LPAGWKPLFVNA-NDGS--NEGIMHSSKPFFSVQFHPEATPGP--------HD------TEYLFDVFIELVKKSKSTP 359 (1435)
T ss_pred --ccCCCchheeec-ccCC--CceEecCCCCceeeecCCcCCCCC--------cc------hHHHHHHHHHHHHHHhcCC
Confidence 899999999984 4444 588889889999999999987643 32 2466666777666655443
No 76
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.37 E-value=4.6e-13 Score=116.92 Aligned_cols=74 Identities=24% Similarity=0.265 Sum_probs=51.1
Q ss_pred eeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccCcccccccCCCCCHHHHHHHHH
Q psy15935 73 YNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRL 151 (202)
Q Consensus 73 ~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~~e~~~~~~~~h~~~~~~~~~~ 151 (202)
-+-|+|.+.++..+. -...++++.++| .+++. |+++|..++| ++|+|||||+..... -||.
T Consensus 456 RHRHRYEvN~~y~~~-le~~Gl~~sg~s-~d~~l--vEivE~~~hpfFv~~QfHPEf~SrP~-----~phP--------- 517 (533)
T COG0504 456 RHRHRYEVNNDYRDQ-LEKAGLVFSGTS-PDGGL--VEIVELPDHPFFVATQFHPEFKSRPL-----RPHP--------- 517 (533)
T ss_pred eccchhhcCHHHHHH-HHhCCeEEEEEc-CCCCe--EEEEEcCCCceEEEEcccccccCCCC-----CCCc---------
Confidence 567889998765332 235689999997 33455 9999999999 569999999875433 3454
Q ss_pred HHHHHHHHHHhCC
Q psy15935 152 FYDWIVTEASKNK 164 (202)
Q Consensus 152 ~~~~f~~~ar~~~ 164 (202)
+..-|+++|.+.+
T Consensus 518 lf~~fv~Aa~~~~ 530 (533)
T COG0504 518 LFVGFVKAALEYK 530 (533)
T ss_pred cHHHHHHHHHHhh
Confidence 3444666665543
No 77
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.27 E-value=5.4e-11 Score=97.56 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=34.2
Q ss_pred cceeeeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 69 NNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 69 ~~~~~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
...++..|++...++. + -.++|++ +.....++++++. .+++|+|||||++.
T Consensus 152 ~~~v~~l~sy~~~~~~------~--~~~~a~~-~y~~~~~~~aV~q--gnvlatqFHPEls~ 202 (248)
T PLN02832 152 GPGVEVLAEYPLPSEK------A--LYSSSTD-AEGRDKVIVAVKQ--GNLLATAFHPELTA 202 (248)
T ss_pred CCcEEEEEEecccccc------c--ccccccc-cccCCceEEEEEe--CCEEEEEccCccCC
Confidence 4567888988765432 1 1244553 3322267888887 68999999999974
No 78
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.08 E-value=9.9e-11 Score=94.81 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=69.6
Q ss_pred CcccEEeEcHHHHHHHhh-hcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 6 DYFPILGICLGFELLLFV-ENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~-~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
..+||+|||.|+|+|+.+ .++|++......... ...+.+......+.+++.+...... .-+++++-|++.+.++.
T Consensus 78 ~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~-~~~v~v~i~~~~~~~~~~~~~g~~~---~~~~aH~~~r~~~~~~~ 153 (219)
T PRK03619 78 KGKPVLGICNGFQILTEAGLLPGALTRNASLKFI-CRDVHLRVENNDTPFTSGYEKGEVI---RIPIAHGEGNYYADEET 153 (219)
T ss_pred CCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEE-EEEEEEEECCCCChhhcCCCCCCEE---EEEEEcCcccEEECHHH
Confidence 468999999999999984 256666544333221 2233333223456778777432110 01234555667665433
Q ss_pred cccccC-CCcceEeeee-ecCCC-ceeEEEEeecCCCEEEEeeeCCccCcc
Q psy15935 85 MNSTKL-SDAWDILTES-KAGNG-KKFVSTVQSKKYPFVGIQFHPEKNSYE 132 (202)
Q Consensus 85 ~~~~~L-~~~~~vla~s-~~~~~-~~~v~~i~~~~~pi~gvQfHPE~~~~e 132 (202)
.+ .| ..++.++..+ .+.+| ..-|+++...+..++|+|||||+....
T Consensus 154 ~~--~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~ 202 (219)
T PRK03619 154 LK--RLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEP 202 (219)
T ss_pred HH--HHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccC
Confidence 22 34 3455545543 12233 223778887677899999999998644
No 79
>KOG0623|consensus
Probab=98.95 E-value=1.2e-09 Score=91.91 Aligned_cols=109 Identities=20% Similarity=0.339 Sum_probs=64.3
Q ss_pred CcccEEeEcHHHHHHHhhhcCCe--eccccCC-------ccceeeee---eEeccCCCccccccCChhHHHHhhhcceee
Q psy15935 6 DYFPILGICLGFELLLFVENKEK--ELRTDCN-------CFHENLSL---RFLKNGSKTGLYKTFPKKSLKALAKNNITY 73 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~--~~~~~~~-------~~~~~~~i---~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~ 73 (202)
..+|++|||.|.|+|...+.... ..+..++ ...+..|. +-.....++.+|+..|. ..+|
T Consensus 73 sgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~p~---------~~~Y 143 (541)
T KOG0623|consen 73 SGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDVPN---------RHVY 143 (541)
T ss_pred cCCCeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCCcccccccCCC---------ceEE
Confidence 57899999999999986533221 1222222 11112221 11112345566666654 3569
Q ss_pred eeeeeeEeecccccccC-CCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 74 NYHIWCITRATMNSTKL-SDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 74 ~~H~~~v~~~~~~~~~L-~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
+.|++-...... .| +.+|++ |+. .....+||++|+. .++.++|||||++.
T Consensus 144 FVHSyl~~ek~~---~len~~wki-at~-kYG~E~Fi~ai~k--nN~~AtQFHPEKSG 194 (541)
T KOG0623|consen 144 FVHSYLNREKPK---SLENKDWKI-ATC-KYGSESFISAIRK--NNVHATQFHPEKSG 194 (541)
T ss_pred EEeeeccccccc---CCCCCCceE-eee-ccCcHHHHHHHhc--CceeeEeccccccc
Confidence 999985442211 23 456775 443 2334679999986 67999999999975
No 80
>KOG2387|consensus
Probab=98.90 E-value=1.1e-09 Score=94.75 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=42.3
Q ss_pred eeeeeeeEeecccccccCCCcceEeeeeecCCCceeEEEEeecCCC-EEEEeeeCCccCcccc
Q psy15935 73 YNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNSYEWN 134 (202)
Q Consensus 73 ~~~H~~~v~~~~~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~p-i~gvQfHPE~~~~e~~ 134 (202)
-+-|+|.|.|+.... -...|+..++.+ .+|. -++++|-+++| +.|+|||||+..-...
T Consensus 477 RHRHRyEVNP~~v~~-le~~Gl~FvGkd--~~g~-rmeI~El~~HP~fVg~QfHPE~~srp~k 535 (585)
T KOG2387|consen 477 RHRHRYEVNPEMVKQ-LEQAGLSFVGKD--VTGK-RMEIIELESHPFFVGVQFHPEFKSRPDK 535 (585)
T ss_pred hhhcceecCHHHHHH-HHhcCcEEEeec--CCCc-EEEEEEcCCCCceeeeccCHHHhcCCCC
Confidence 467899998865332 234688888984 4442 28899999999 5699999999765543
No 81
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.66 E-value=3.2e-08 Score=79.30 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.9
Q ss_pred EEEEeecCCCEEEEeeeCCccCccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
|++|...+++++|++.||||....|
T Consensus 189 IaGI~n~~G~V~gmMPHPERa~~~~ 213 (231)
T COG0047 189 IAGITNEDGNVLGMMPHPERASESL 213 (231)
T ss_pred ceeEEcCCCCEEEecCCchhhhhcc
Confidence 8999999999999999999987665
No 82
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.52 E-value=3.8e-07 Score=74.75 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=23.7
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|..++++++|++.|||+....|.
T Consensus 195 iAgi~~~~GrvlglMphPer~~~~~q 220 (238)
T cd01740 195 IAGICNEDGRVLGMMPHPERAVEPWQ 220 (238)
T ss_pred ceEEEcCCCCEEEEcCChHHcccccc
Confidence 89999999999999999999887763
No 83
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.50 E-value=2.1e-07 Score=77.26 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=23.2
Q ss_pred EEEEeecCCCEEEEeeeCCccCccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
|++|...+++++|++.|||+....|
T Consensus 208 IAGi~~~~G~vlglMpHPEr~~~~~ 232 (261)
T PRK01175 208 IAGITNEKGNVIGLMPHPERAFYGY 232 (261)
T ss_pred cceeECCCCCEEEEcCCHHHhhchh
Confidence 8999999999999999999987766
No 84
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.45 E-value=1.5e-06 Score=68.10 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.0
Q ss_pred cCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 89 KLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 89 ~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
+..++.+++|+- ++. +-+++. .+++|+-||||-+.
T Consensus 134 ~~~~~v~vla~~---~~~--~v~v~q--~~~l~~~FHPElt~ 168 (179)
T PRK13526 134 VVGNQVDILSKY---QNS--PVLLRQ--ANILVSSFHPELTQ 168 (179)
T ss_pred EcCCCcEEEEEE---CCE--EEEEEE--CCEEEEEeCCccCC
Confidence 467899999984 344 666665 68999999999863
No 85
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.08 E-value=1e-05 Score=67.10 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=23.2
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|...+++++|+..|||+....|.
T Consensus 209 IAGics~~GrvlglMpHPEr~~~~~~ 234 (259)
T PF13507_consen 209 IAGICSPDGRVLGLMPHPERAFEPWQ 234 (259)
T ss_dssp EEEEE-TTSSEEEESSBCCGTTCCCC
T ss_pred eeEEEcCCCCEEEEcCChHHhCchhh
Confidence 99999999999999999999988774
No 86
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.83 E-value=0.00019 Score=56.11 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=25.0
Q ss_pred CCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 90 LSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 90 L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
..++.+++|+= ++. +-+++. .+++|+-||||.+.
T Consensus 145 vg~~V~vLa~l---~~~--iVav~q--gn~LatsFHPELT~ 178 (194)
T COG0311 145 VGDGVEVLATL---DGR--IVAVKQ--GNILATSFHPELTD 178 (194)
T ss_pred hcCcceEeeee---CCE--EEEEEe--CCEEEEecCccccC
Confidence 55578999983 343 555554 68999999999863
No 87
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.78 E-value=7.2e-05 Score=74.30 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=23.8
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|...+++++|++.|||+....|.
T Consensus 1239 IaGi~s~dGrvlglMpHPEr~~~~~q 1264 (1290)
T PRK05297 1239 ITGLTTADGRVTIMMPHPERVFRTVQ 1264 (1290)
T ss_pred ceEeECCCCCEEEEcCChHHhcchhh
Confidence 89999999999999999999887764
No 88
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.77 E-value=7.6e-05 Score=58.60 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=22.3
Q ss_pred CcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 92 DAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 92 ~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
++..+++.. + +. |-+++. .+++++-||||-+.
T Consensus 142 ~~v~vla~~--~-g~--iVav~q--gn~latsFHPELT~ 173 (188)
T PF01174_consen 142 EGVEVLAEL--D-GK--IVAVRQ--GNILATSFHPELTD 173 (188)
T ss_dssp TTEEEEEEE--T-TE--EEEEEE--TTEEEESS-GGGSS
T ss_pred ccccccccc--c-cc--eEEEEe--cCEEEEEeCCcccC
Confidence 677888874 2 43 455554 68999999999874
No 89
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.74 E-value=7.2e-05 Score=74.24 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.6
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|...+++++|++.||||....|.
T Consensus 1260 IaGi~s~dGrvl~~MpHPEr~~~~~q 1285 (1310)
T TIGR01735 1260 IAGITSCDGRVTIMMPHPERVFRAWQ 1285 (1310)
T ss_pred ceEeECCCCCEEEEcCCHHHhhhHhh
Confidence 89999999999999999999877663
No 90
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.72 E-value=0.00012 Score=72.04 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.4
Q ss_pred EEEEeecCCCEEEEeeeCCccCccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
|++|...+++++|++.||||....+
T Consensus 1195 IaGi~s~dGrvlg~MpHpER~~~~~ 1219 (1239)
T TIGR01857 1195 IEGITSPDGRIFGKMGHSERYGDGL 1219 (1239)
T ss_pred hhEeECCCCCEEEECCCcccccCcc
Confidence 8999999999999999999986554
No 91
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.65 E-value=8.4e-05 Score=62.53 Aligned_cols=105 Identities=26% Similarity=0.243 Sum_probs=57.9
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeee--eEeecc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIW--CITRAT 84 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~--~v~~~~ 84 (202)
.++.|.||.|.|.......|-..........|. .+...+ ...++|+++++..+ +.=|+- .+..+.
T Consensus 134 v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGV-f~~~~~--~~~~pLl~Gfdd~f----------~~PhSR~t~i~~~~ 200 (298)
T PF04204_consen 134 VTSTLFICWGAQAALYHFYGIPKYPLPEKLFGV-FEHRVL--DPDHPLLRGFDDTF----------FAPHSRYTEIDRDD 200 (298)
T ss_dssp EEEEEEETHHHHHHHHHHH----EEEEEEEEEE-EEEEES---SS-GGGTT--SEE----------EEEEEEEEE--HHH
T ss_pred CCcchhhhHHHHHHHHHHcCCCcccCCCcceec-eeeecc--CCCChhhcCCCccc----------cCCcccccCCCHHH
Confidence 468899999999955442665433332223332 333322 24688999998654 333443 344333
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
+ ...++++|+|.| +..| +..+..+++..+=++.|||+...
T Consensus 201 i---~~~~~L~vLa~s-~~~G---~~l~~~~d~r~vfi~GH~EYd~~ 240 (298)
T PF04204_consen 201 I---KKAPGLEVLAES-EEAG---VFLVASKDGRQVFITGHPEYDAD 240 (298)
T ss_dssp H---CT-TTEEEEEEE-TTTE---EEEEEECCCTEEEE-S-TT--TT
T ss_pred H---hcCCCcEEEecc-CCcc---eEEEEcCCCCEEEEeCCCccChh
Confidence 2 247789999998 6678 67777777787889999999753
No 92
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.61 E-value=0.00016 Score=71.56 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.7
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|...+++++|++.||||....|.
T Consensus 1252 IAGi~s~dGRvlgmMpHPER~~~~~q 1277 (1307)
T PLN03206 1252 IAALCSPDGRHLAMMPHPERCFLMWQ 1277 (1307)
T ss_pred ceeeECCCCCEEEEcCCHHHhhhhhh
Confidence 89999999999999999999887764
No 93
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.18 E-value=0.00011 Score=57.40 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=48.9
Q ss_pred CcccEEeEcHHHHHHHhhhcCCee-ccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeecc
Q psy15935 6 DYFPILGICLGFELLLFVENKEKE-LRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRAT 84 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~~-~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 84 (202)
...|+||||.|+|+...+ ++|.. ...+....| ..+..... .++|+++++..+.+ .+.|...|..+.
T Consensus 97 ~v~stl~iCWgaqaal~~-~yGi~k~~~~~K~~G-vf~~~~~~---~hpL~~g~~d~F~~--------PhSR~~~v~~~~ 163 (175)
T cd03131 97 HVTSTLFSCWAAMAALYY-FYGIKKHQLPEKIFG-VFPHTILE---PHPLLRGLDDGFDV--------PHSRYAEVDRED 163 (175)
T ss_pred hCcchHHHHHHHHHHHHH-HcCcccccCCCceEE-EEEeeecC---CCccccCCCCceee--------cCcccccCCHHH
Confidence 347999999999999999 88874 333333344 23333322 67899999877654 566666666443
Q ss_pred cccccCCCcceEee
Q psy15935 85 MNSTKLSDAWDILT 98 (202)
Q Consensus 85 ~~~~~L~~~~~vla 98 (202)
+ ...++++|+|
T Consensus 164 ~---~~~~~l~il~ 174 (175)
T cd03131 164 I---EEAAGLTILA 174 (175)
T ss_pred H---hhCCCCEEcc
Confidence 2 1345556554
No 94
>PHA03366 FGAM-synthase; Provisional
Probab=97.05 E-value=0.0024 Score=63.81 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.8
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|...+++++|+..|||+....|.
T Consensus 1247 IaGi~s~dGR~l~mMphPer~~~~~q 1272 (1304)
T PHA03366 1247 VAGLCSADGRHLALLFDPSLSFHPWQ 1272 (1304)
T ss_pred eeeEECCCCCEEEecCCHHHhhhhhh
Confidence 89999999999999999999987764
No 95
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=96.91 E-value=0.0043 Score=61.58 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.7
Q ss_pred EEEEeecCCCEEEEeeeCCccCcccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEWN 134 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~~ 134 (202)
|++|...+++++|+..|||+....|.
T Consensus 1148 IAGi~s~dGR~l~lMphPer~~~~~q 1173 (1202)
T TIGR01739 1148 VAGLCSADGRHLALLIDPSLSFFPWQ 1173 (1202)
T ss_pred eeeEECCCCCEEEecCCHHHhhhhhh
Confidence 89999999999999999999877664
No 96
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=96.85 E-value=0.0011 Score=55.63 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=63.9
Q ss_pred cccEEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeee--eEeecc
Q psy15935 7 YFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIW--CITRAT 84 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~--~v~~~~ 84 (202)
....|.||.|.|.-...-.|=.....+....| ..+...+ ..++|+++++..+.+ =|+- .|..+.
T Consensus 135 v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG-Vf~h~~~---~~~pL~rGfdd~f~~----------PhSR~t~i~~~~ 200 (300)
T TIGR01001 135 VTSTMFICWAAQAGLKYFYGIPKYTLPEKLSG-VYKHDIA---PDSLLLRGFDDFFLA----------PHSRYADFDAED 200 (300)
T ss_pred CcchHHHHHHHHHHHHHHcCCCccccCCceEE-eecCccC---CCCccccCCCCcccc----------CCCCCCCCCHHH
Confidence 45678999999996655255333332223333 2333222 367899999876643 2333 344333
Q ss_pred cccccCCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccC
Q psy15935 85 MNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNS 130 (202)
Q Consensus 85 ~~~~~L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~ 130 (202)
. ...++++|+|.| +..| +..+..++..-+=++.|||+..
T Consensus 201 i---~~~~~L~vla~s-~e~G---~~l~~s~d~r~vfi~GH~EYd~ 239 (300)
T TIGR01001 201 I---DKVTDLEILAES-DEAG---VYLAANKDERNIFVTGHPEYDA 239 (300)
T ss_pred H---hcCCCCeEEecC-CCcc---eEEEEcCCCCEEEEcCCCccCh
Confidence 2 234689999998 5667 5677666666556999999975
No 97
>KOG3210|consensus
Probab=96.57 E-value=0.0098 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.0
Q ss_pred CcccEEeEcHHHHHHHhhhcCCe
Q psy15935 6 DYFPILGICLGFELLLFVENKEK 28 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~gg~ 28 (202)
..+|+||+|.||-+|+.-+.|++
T Consensus 90 ~~k~~WGTCAGmI~LS~ql~nek 112 (226)
T KOG3210|consen 90 PSKVTWGTCAGMIYLSQQLSNEK 112 (226)
T ss_pred CCccceeechhhhhhhhhhcCCc
Confidence 35899999999999998845554
No 98
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=96.12 E-value=0.0033 Score=49.88 Aligned_cols=18 Identities=39% Similarity=0.635 Sum_probs=16.8
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
..+||||||.|+|+|+..
T Consensus 71 ~g~pvlgiC~G~qlL~~~ 88 (194)
T cd01750 71 AGGPVLGICGGYQMLGKY 88 (194)
T ss_pred CCCcEEEECHHHHHhhhh
Confidence 478999999999999998
No 99
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=95.75 E-value=0.0055 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=17.6
Q ss_pred CcccEEeEcHHHHHHHhhhcC
Q psy15935 6 DYFPILGICLGFELLLFVENK 26 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~g 26 (202)
+.+||+|||.|+|+|+..+..
T Consensus 74 ~g~pilgICgG~qlL~~~~~d 94 (198)
T cd03130 74 SGGPIYAECGGLMYLGESLDD 94 (198)
T ss_pred cCCCEEEEcccHHHHHHHhhc
Confidence 457999999999999987443
No 100
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.50 E-value=0.0064 Score=54.76 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=16.8
Q ss_pred cccEEeEcHHHHHHHhhhc
Q psy15935 7 YFPILGICLGFELLLFVEN 25 (202)
Q Consensus 7 ~~PilGIC~G~QlL~~~~~ 25 (202)
..||||||.|||+|+..+.
T Consensus 65 g~pvlGICgG~QmLg~~~~ 83 (476)
T PRK06278 65 DGYIIGICSGFQILSEKID 83 (476)
T ss_pred CCeEEEEcHHHHhcccccc
Confidence 5899999999999998743
No 101
>KOG1907|consensus
Probab=95.10 E-value=0.059 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.3
Q ss_pred EEEEeecCCCEEEEeeeCCccCccc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
|++|...+++.++++-||||...-|
T Consensus 1265 IAgicSpdGRhLAMMPHpER~~l~~ 1289 (1320)
T KOG1907|consen 1265 IAGICSPDGRHLAMMPHPERVFLMW 1289 (1320)
T ss_pred ceeeeCCCCCeeeccCCchheeeee
Confidence 8999999999999999999976544
No 102
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=93.13 E-value=0.066 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=17.4
Q ss_pred CCcccEEeEcHHHHHHHhhh
Q psy15935 5 GDYFPILGICLGFELLLFVE 24 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~~ 24 (202)
....||+|+|-|+|+|+...
T Consensus 40 ~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 40 EAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred HcCCcEEEEchHHHHHHHHH
Confidence 35689999999999999883
No 103
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.14 Score=42.28 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=61.0
Q ss_pred EEeEcHHHHHHHhhhcCCeeccccCCccceeeeeeEeccCCCccccccCChhHHHHhhhcceeeeeeeeeEeeccccccc
Q psy15935 10 ILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMNSTK 89 (202)
Q Consensus 10 ilGIC~G~QlL~~~~~gg~~~~~~~~~~~~~~~i~~~~~~~~s~lf~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~~~~ 89 (202)
.|-||.|.|.-..+-.|-.....+....|. .+.... ...+.++.++++++.+ -+...-.+..+...
T Consensus 138 Tl~ICWgaqAaly~~yGv~K~~l~~Kl~GV-y~h~~l--~p~~~l~rGfdd~f~~--------PhSR~t~~~~e~i~--- 203 (307)
T COG1897 138 TLHICWGAQAALYYFYGVPKYTLPEKLSGV-YKHDIL--SPHSLLTRGFDDSFLA--------PHSRYTDVPKEDIL--- 203 (307)
T ss_pred hhhhHHHHHHHHHHHcCCCccccchhhhce-eecccc--CccchhhccCCccccC--------cccccccCCHHHHh---
Confidence 467999999988772343322222222332 222222 2467788888877653 22222223333322
Q ss_pred CCCcceEeeeeecCCCceeEEEEeecCCCEEEEeeeCCccCc
Q psy15935 90 LSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSY 131 (202)
Q Consensus 90 L~~~~~vla~s~~~~~~~~v~~i~~~~~pi~gvQfHPE~~~~ 131 (202)
--++++|++.| +.-| +..+..++.+-+=+-.|||+...
T Consensus 204 ~~~~LeIL~es-~e~G---~~l~a~k~~r~ifv~gH~EYD~~ 241 (307)
T COG1897 204 AVPDLEILAES-KEAG---VYLLASKDGRNIFVTGHPEYDAT 241 (307)
T ss_pred hCCCceeeecc-cccc---eEEEecCCCCeEEEeCCcchhhh
Confidence 22458999998 5667 67777777776668899998753
No 104
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=92.78 E-value=0.067 Score=48.29 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.4
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
.+.||||||.|||+|+..
T Consensus 318 ~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 318 EGGIVIGICGGYQMLGKE 335 (475)
T ss_pred cCCcEEEEcHHHHHhhhh
Confidence 467999999999999986
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=91.74 E-value=0.11 Score=47.00 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=16.5
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
...||||||.|+|+|+..
T Consensus 324 ~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 324 RGGPVLGICGGYQMLGRR 341 (488)
T ss_pred cCCeEEEECHHHHHHhhh
Confidence 468999999999999998
No 106
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=89.62 E-value=0.23 Score=44.51 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=16.3
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
++.||||||-|+|+|+..
T Consensus 320 ~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 320 QGLPIYGECGGLMYLSQS 337 (449)
T ss_pred cCCCEEEEcHHHHHHHhh
Confidence 457999999999999987
No 107
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=88.39 E-value=0.29 Score=43.69 Aligned_cols=18 Identities=39% Similarity=0.587 Sum_probs=16.5
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
++.||+|+|-|+|+|+..
T Consensus 307 ~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 307 DGLPVLGECGGLMALAES 324 (433)
T ss_pred CCCcEEEEehHHHHhhcc
Confidence 468999999999999987
No 108
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=87.86 E-value=0.3 Score=43.97 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.7
Q ss_pred CCcccEEeEcHHHHHHHhh
Q psy15935 5 GDYFPILGICLGFELLLFV 23 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~ 23 (202)
+...||+|||-|||+|...
T Consensus 323 ~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 323 RKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred hCCCCEEEEcchHHhhhhh
Confidence 3478999999999999986
No 109
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=87.39 E-value=0.3 Score=32.90 Aligned_cols=15 Identities=67% Similarity=1.068 Sum_probs=13.8
Q ss_pred CcccEEeEcHHHHHH
Q psy15935 6 DYFPILGICLGFELL 20 (202)
Q Consensus 6 ~~~PilGIC~G~QlL 20 (202)
.+.|++|+|.|+|++
T Consensus 78 ~~~~i~~~c~g~~~l 92 (115)
T cd01653 78 AGKPILGICLGAQLL 92 (115)
T ss_pred cCCEEEEECchhHhH
Confidence 468999999999999
No 110
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=87.35 E-value=0.41 Score=42.93 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=16.4
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
++.||+|||.|+|+|+..
T Consensus 321 ~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 321 AGKPIYAECGGLMYLGES 338 (451)
T ss_pred cCCCEEEEcHHHHHHHhh
Confidence 457999999999999998
No 111
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=85.03 E-value=0.41 Score=34.78 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=12.7
Q ss_pred CcccEEeEcHHHHHH
Q psy15935 6 DYFPILGICLGFELL 20 (202)
Q Consensus 6 ~~~PilGIC~G~QlL 20 (202)
+..|+||||+|.=+.
T Consensus 76 ~g~p~LGIClGAy~a 90 (114)
T cd03144 76 NGGNYLGICAGAYLA 90 (114)
T ss_pred CCCcEEEEecCccce
Confidence 468999999998776
No 112
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=82.88 E-value=0.72 Score=36.95 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=16.0
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
++.|++|||.|+|++...
T Consensus 113 ~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 113 RGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred CCCEEEEECHhHHhhCCC
Confidence 468999999999999984
No 113
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=82.22 E-value=0.62 Score=37.72 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=17.2
Q ss_pred CCcccEEeEcHHHHHHHhh
Q psy15935 5 GDYFPILGICLGFELLLFV 23 (202)
Q Consensus 5 g~~~PilGIC~G~QlL~~~ 23 (202)
.+..|+|.||-|.|+|...
T Consensus 85 ~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 85 ENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred hcCCcEEEEccchhhccce
Confidence 5689999999999999976
No 114
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=72.18 E-value=1.1 Score=26.02 Aligned_cols=14 Identities=21% Similarity=0.683 Sum_probs=10.4
Q ss_pred EEeEcHHHHHHHhh
Q psy15935 10 ILGICLGFELLLFV 23 (202)
Q Consensus 10 ilGIC~G~QlL~~~ 23 (202)
.-|.|+|.|+|..+
T Consensus 32 tagacfgaqimvaa 45 (48)
T PF09075_consen 32 TAGACFGAQIMVAA 45 (48)
T ss_dssp S--TTTTTHHHHTT
T ss_pred ccccccchhhhhhc
Confidence 35889999999876
No 115
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=70.09 E-value=3.2 Score=32.00 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=16.3
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
..+||.|||.|.++|+.+
T Consensus 107 ~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 107 ANKPVAAICHGPQILAAA 124 (180)
T ss_pred cCCEEEEECcHHHHHHHc
Confidence 467999999999999986
No 116
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=61.05 E-value=6.7 Score=29.56 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=16.1
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
..+||.|||.|.++|+.+
T Consensus 91 ~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 91 KGKPVAAICHGPQLLISA 108 (166)
T ss_pred cCCEEEEEChHHHHHHhc
Confidence 468999999999999976
No 117
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=50.45 E-value=12 Score=28.01 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.1
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
..+||.|||.|.++|+.+
T Consensus 93 ~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 93 AGKPVAAICHGPWVLISA 110 (165)
T ss_pred cCCeEEEEchHHHHHHhc
Confidence 568999999999999876
No 118
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=35.03 E-value=33 Score=27.62 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=16.1
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
.++||.+||.|-++|+.+
T Consensus 124 ~gK~VaAIChgp~~L~~~ 141 (213)
T cd03133 124 AGKPIGAICIAPALAAKI 141 (213)
T ss_pred CCCeEEEECHHHHHHHHH
Confidence 467999999999999887
No 119
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=34.63 E-value=37 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.189 Sum_probs=16.6
Q ss_pred CcccEEeEcHHHHHHHhhhc
Q psy15935 6 DYFPILGICLGFELLLFVEN 25 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~~~ 25 (202)
.++||.+||.|-++|+.+ +
T Consensus 127 ~gK~vaAIChgp~iL~~~-~ 145 (217)
T PRK11780 127 AGKPIGFICIAPAMLPKI-L 145 (217)
T ss_pred CCCEEEEECHHHHHHHHH-h
Confidence 467999999999999887 5
No 120
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=31.40 E-value=33 Score=23.33 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCCCChHhhhhhcccc
Q psy15935 151 LFYDWIVTEASKNKHAYPSHADLYKEVIYN 180 (202)
Q Consensus 151 ~~~~~f~~~ar~~~~~f~~~~e~~~~li~n 180 (202)
.+..||.+....+.-+|.|..|..++||.|
T Consensus 25 A~~~y~~~~V~pnt~~F~S~~Erl~yLv~~ 54 (82)
T PF08343_consen 25 AVRAYFKEHVNPNTVKFNSLKERLDYLVEN 54 (82)
T ss_dssp HHHHHHHHTTGGGB---SSHHHHHHHHHHT
T ss_pred HHHHHHHHhcccceeecCCHHHHHHHHHHc
Confidence 456677777999999999999999999987
No 121
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=29.61 E-value=44 Score=25.32 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=16.1
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
...+|.+||-|..+|+.+
T Consensus 90 ~~~~i~aic~G~~~La~a 107 (170)
T cd03140 90 QGKPVAAICGATLALARA 107 (170)
T ss_pred cCCEEEEEChHHHHHHHC
Confidence 457999999999999987
No 122
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.39 E-value=47 Score=25.38 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=16.0
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
...+|.+||-|-.+|+.+
T Consensus 95 ~~~~i~aic~g~~~La~a 112 (187)
T cd03137 95 RGARVASVCTGAFVLAEA 112 (187)
T ss_pred cCCEEEEECHHHHHHHHc
Confidence 467999999999999987
No 123
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=26.22 E-value=4.5e+02 Score=23.09 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCcceEeeeeecC------CCceeEEEEeecCCCEEEEeeeCCccCccc
Q psy15935 91 SDAWDILTESKAG------NGKKFVSTVQSKKYPFVGIQFHPEKNSYEW 133 (202)
Q Consensus 91 ~~~~~vla~s~~~------~~~~~v~~i~~~~~pi~gvQfHPE~~~~e~ 133 (202)
+.+.+|||.=.+. .+...|-..+.-++.++-+-.|||..+...
T Consensus 173 ~~~v~vLA~Y~~~~~v~~~~~~aAvV~c~vGkG~aiLsG~HpE~~~~~l 221 (367)
T PF09825_consen 173 DKNVEVLARYEDDLDVPGGEGKAAVVYCKVGKGRAILSGPHPEFSPSNL 221 (367)
T ss_pred CCCeEEEEEEecCCCCCCCCCCcEEEEEEeCCceEEEEecccccChhhc
Confidence 5688999984221 122112222223456888899999986543
No 124
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=25.01 E-value=53 Score=25.20 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=16.4
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
..+||.+||-|-++|..+
T Consensus 98 ~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 98 NGKPVAAICHGPAVLAAA 115 (188)
T ss_pred cCCEEEEEChhHHHHhcc
Confidence 478999999999999987
No 125
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=24.78 E-value=58 Score=24.02 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=16.0
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
..++|.+||-|-.+|+.+
T Consensus 92 ~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 92 KGKLIAAICAAPAVLAKA 109 (163)
T ss_pred cCCEEEEEchhHHHHHHc
Confidence 467999999999999986
No 126
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=23.30 E-value=1.3e+02 Score=15.91 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.9
Q ss_pred EEEEeecCCCEEEEeeeCCc
Q psy15935 109 VSTVQSKKYPFVGIQFHPEK 128 (202)
Q Consensus 109 v~~i~~~~~pi~gvQfHPE~ 128 (202)
+..+++-..++.++.|||..
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~ 23 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDG 23 (39)
T ss_dssp EEEEESSSSSEEEEEEETTS
T ss_pred EEEEcCCCCcEEEEEEeccc
Confidence 56666666789999999983
No 127
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=22.19 E-value=69 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=16.2
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
...||.+||-|-.+|+.+
T Consensus 95 ~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 95 KGKLVAAICAAPAVLLAA 112 (179)
T ss_pred CCCEEEEEChhHHHHHhc
Confidence 467999999999999987
No 128
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=20.84 E-value=64 Score=23.76 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.9
Q ss_pred CcccEEeEcHHHHHHHhh
Q psy15935 6 DYFPILGICLGFELLLFV 23 (202)
Q Consensus 6 ~~~PilGIC~G~QlL~~~ 23 (202)
.++||.+||.|-.+|+.+
T Consensus 70 ~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 70 AGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp TT-EEEEETTCHHHHHHT
T ss_pred cCCeEEecCCCcchhhcc
Confidence 478999999999888876
Done!