RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15935
(202 letters)
>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. Type 1 glutamine
amidotransferase (GATase1) domain found in
gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase
catalyzes the cleavage of the gamma-glutamyl chain of
folylpoly-gamma-glutamyl substrates and is a central
enzyme in folyl and antifolyl poly-gamma-glutamate
metabolism. GATase activity involves the removal of the
ammonia group from a glutamate molecule and its
subsequent transfer to a specific substrate, thus
creating a new carbon-nitrogen group on the substrate.
gamma-Glutamyl hydrolases belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 273
Score = 177 bits (450), Expect = 1e-55
Identities = 71/184 (38%), Positives = 109/184 (59%), Gaps = 1/184 (0%)
Query: 2 NSRGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKK 61
N GDYFP+ G CLGFELL ++ + E L + L L F ++ ++ L+K FP
Sbjct: 87 NDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPD 146
Query: 62 SLKALAKNNITYNYHIWCITRATM-NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFV 120
LK+LA +T N H + I+ + LSD +++LT + NG +F+STV++ KYP
Sbjct: 147 LLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIY 206
Query: 121 GIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHAYPSHADLYKEVIYN 180
G+Q+HPEKN++EW + + HS AI ++ F ++ V EA K+ + + S + K +IYN
Sbjct: 207 GVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNNRFESAEEETKHLIYN 266
Query: 181 YAPT 184
Y PT
Sbjct: 267 YKPT 270
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 186
Score = 47.6 bits (114), Expect = 5e-07
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 4 RGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSL 63
R + PILGICLG +LL + K ++ + + K
Sbjct: 67 RENKIPILGICLGHQLL-ALAFGGKVIK-----------AKKEPHHGKNSPVGHDKGL-F 113
Query: 64 KALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQ 123
L I YH + + T L D ++ S+ G + ++ K+ P G+Q
Sbjct: 114 YGLPNVFIVRRYHSYAVDPDT-----LPDGLEVTAASENGG----IMAIRHKENPIFGVQ 164
Query: 124 FHPEK 128
FHPE
Sbjct: 165 FHPES 169
>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have
gamma-glutamyl hydrolase activity; that is they catalyze
the cleavage of the gamma-glutamyl bond in
poly-gamma-glutamyl substrates. They are structurally
related to pfam00117, but contain extensions in four
loops and at the C terminus.
Length = 219
Score = 48.0 bits (115), Expect = 5e-07
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 35/137 (25%)
Query: 5 GDYFPILGICLGFELL-------LFVENKEKELRTDCNCFHENLSLRF-------LKNGS 50
PILGIC G +LL L+ + E +D H L++++ L+ GS
Sbjct: 104 ERGKPILGICRGMQLLNVALGGTLYQDIPEHPGNSD---HHHQLAVQYAPSHAVSLEPGS 160
Query: 51 KTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVS 110
L + + + + H I R L+ + + G + +
Sbjct: 161 L--LARLLGAEEIL-------VNSLHHQAIKR-------LAPGLRVEATAPDG-TIEAIE 203
Query: 111 TVQSKKYPFVGIQFHPE 127
+ + +G+Q+HPE
Sbjct: 204 SPNAPY-FVLGVQWHPE 219
>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 42.6 bits (100), Expect = 7e-05
Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 31/131 (23%)
Query: 2 NSRGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLS---LRFLKNG--SKTGLYK 56
+ D P+LGICLGF+ L C + L K+G +
Sbjct: 81 LANLDEVPVLGICLGFQSL---------------CLAQGADISRLPTPKHGQVYEMHTND 125
Query: 57 TFPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKK 116
L ++ + YH A LTE + G + + Q+KK
Sbjct: 126 AAIFCGLFSVK----STRYHS---LYANPEGIDTLLPL-CLTEDEEGI---ILMSAQTKK 174
Query: 117 YPFVGIQFHPE 127
P+ G+Q+HPE
Sbjct: 175 KPWFGVQYHPE 185
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 41.4 bits (98), Expect = 8e-05
Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 28/123 (22%)
Query: 8 FPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKN--GSKTGLYKTFPKKSLKA 65
PILG+CLG + + + KT K
Sbjct: 72 VPILGVCLGHQAI---------------AEAFGGKVVRAPEPMHGKTSEIHHDGSGLFKG 116
Query: 66 LAKNNIT-YNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
L T YH + L D ++ ++ G + ++ + P G+QF
Sbjct: 117 L-PQPFTVGRYHSLVVDPDP-----LPDLLEVTASTEDGV----IMALRHRDLPIYGVQF 166
Query: 125 HPE 127
HPE
Sbjct: 167 HPE 169
>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 39.1 bits (92), Expect = 5e-04
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 22/129 (17%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKT---GLYKTFPKKS--L 63
P LGICLG +LL F ++E + RF K G + + L
Sbjct: 76 PFLGICLGMQLL-FERSEEGGGVKGLGLIPGKVV-RFPAEDLKVPHMGWNQVEFVRGHPL 133
Query: 64 KALAKNNITYNY--HIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVG 121
+ Y Y H + + + ++ + G F + V K G
Sbjct: 134 FKGIPDG-AYFYFVHSYYVPP--------GNPETVVATTDYGE--PFPAAVA--KDNVFG 180
Query: 122 IQFHPEKNS 130
QFHPEK+
Sbjct: 181 TQFHPEKSG 189
>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 38.2 bits (89), Expect = 0.001
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 33/131 (25%)
Query: 3 SRGDYFPILGICLGFELLLFVEN----KEKELRTDCNCFHENLSLRFLKNGSKTGLYKTF 58
S Y PILG+CLG + + ++ K + H S + + L++
Sbjct: 68 SYAPYIPILGVCLGHQSIGYLFGGKIIKAPKP------MHGKTSKIY---HNHDDLFQGL 118
Query: 59 PKKSLKALAKNNITYN-YHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKY 117
P N T YH I + S AW TE +G + + KKY
Sbjct: 119 P---------NPFTATRYHSLIIDPLNLPSPLEITAW---TE----DG--LIMACRHKKY 160
Query: 118 PFV-GIQFHPE 127
+ GIQFHPE
Sbjct: 161 KMLRGIQFHPE 171
>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 37.9 bits (89), Expect = 0.001
Identities = 30/130 (23%), Positives = 44/130 (33%), Gaps = 43/130 (33%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCF-----------HENLSLRFLKNGSKTGLYKT 57
PILG+CLG + + F H S+ +GL+
Sbjct: 76 PILGVCLGHQAI-------------AEAFGGKVVRAKEPMHGKTSIITH---DGSGLFAG 119
Query: 58 FPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKY 117
P YH + T L + ++ ES+ G + V+ KK
Sbjct: 120 LPN-PFTVTR-------YHSLVVDPET-----LPEELEVTAESEDGG---VIMAVRHKKL 163
Query: 118 PFVGIQFHPE 127
P G+QFHPE
Sbjct: 164 PIYGVQFHPE 173
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 37.5 bits (88), Expect = 0.002
Identities = 33/130 (25%), Positives = 45/130 (34%), Gaps = 27/130 (20%)
Query: 9 PILGICLGFELLLF---VENKEKE----LRTDCNCFHENLSLRFLKNGSKTGLYKTFPKK 61
P LGICLG +LL F E + + F + L+ G L T
Sbjct: 73 PFLGICLGMQLL-FESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQ-LEITKESP 130
Query: 62 SLKALAKNNITY---NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP 118
K + + Y +Y+ D IL + G KF + V+
Sbjct: 131 LFKGIPDGSYFYFVHSYYAPP-----------DDPDYILATTDYGG--KFPAAVEKDN-- 175
Query: 119 FVGIQFHPEK 128
G QFHPEK
Sbjct: 176 IFGTQFHPEK 185
>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase.
Length = 222
Score = 37.9 bits (88), Expect = 0.002
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 5 GDYFPILGICLGFELL--LFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKS 62
G P+ G+C+G + + F K +R+ H S + GL+ P
Sbjct: 89 GPLVPLFGVCMGLQCIGEAF---GGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPF 145
Query: 63 LKALAKNNITYNYHIWCITRATMNSTKLS-DAWDILTESKAGNGKKFVSTVQSKKYPFV- 120
YH I + T S +L AW TE + + +KY +
Sbjct: 146 TAG--------RYHSLVIEKDTFPSDELEVTAW---TEDG------LIMAARHRKYKHIQ 188
Query: 121 GIQFHPE 127
G+QFHPE
Sbjct: 189 GVQFHPE 195
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 38.2 bits (89), Expect = 0.002
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 34/125 (27%)
Query: 9 PILGICLGFELLLF------VENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKS 62
PILG+CLG + + + V K H S NG GL++ P +
Sbjct: 75 PILGVCLGHQAIGYAFGGKIVHAK--------RILHGKTS-PIDHNG--KGLFRGIPNPT 123
Query: 63 LKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGI 122
+ T YH + A+ L + ++ +S G + ++ K++P G+
Sbjct: 124 V-------AT-RYHSLVVEEAS-----LPECLEVTAKSDDGE----IMGIRHKEHPIFGV 166
Query: 123 QFHPE 127
QFHPE
Sbjct: 167 QFHPE 171
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 35.2 bits (82), Expect = 0.010
Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSK------TGLYKTFPKKS 62
P+LGICLG +LL +E RF K +
Sbjct: 74 PVLGICLGMQLLF---ESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPL 130
Query: 63 LKALAKNNITY---NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPF 119
K + + + Y +Y++ D D+L + G F S V
Sbjct: 131 FKGIEEGSYFYFVHSYYV-----------PCEDPEDVL--ATTEYGVPFCSAVAKDN--I 175
Query: 120 VGIQFHPEKNS 130
+QFHPEK+
Sbjct: 176 YAVQFHPEKSG 186
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 34.8 bits (81), Expect = 0.011
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 46/130 (35%)
Query: 9 PILGICLGFELL--LF---VENKEKEL--RTDCNCFHENLSLRFLKNGSKTGLYKTFPKK 61
P+LGIC G +L+ VE +K + + + L++ P +
Sbjct: 72 PVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSS------------PLFEGLPDE 119
Query: 62 SLKALAKNNITYNYHIWCITRATMNS----TKLSDAWDILTESKAGNGKKFVSTVQSKKY 117
+W M+ KL + + ++ S N V+ + +++
Sbjct: 120 Q-------------TVW------MSHGDEVVKLPEGFKVIASSD--NCP--VAAIANEEK 156
Query: 118 PFVGIQFHPE 127
G+QFHPE
Sbjct: 157 KIYGVQFHPE 166
>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6 [Amino acid biosynthesis,
Histidine family].
Length = 196
Score = 34.6 bits (80), Expect = 0.018
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEKNS 130
G+KF + VQ G QFHPEK+
Sbjct: 160 GEKFPAAVQKGNI--FGTQFHPEKSG 183
>gnl|CDD|183101 PRK11366, puuD, gamma-glutamyl-gamma-aminobutyrate hydrolase;
Provisional.
Length = 254
Score = 34.5 bits (79), Expect = 0.021
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 99 ESKAGNGKKFVSTVQSKKYPFV-GIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIV 157
E+++ +G V V +PF G+Q+HPE NS E+ SR+ ++ +
Sbjct: 197 EARSPDG--LVEAVSVINHPFALGVQWHPEWNSSEY-------------ALSRILFEGFI 241
Query: 158 TEASKNKHA 166
T A ++ A
Sbjct: 242 T-ACQHHIA 249
>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 201
Score = 34.0 bits (78), Expect = 0.026
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 34/134 (25%)
Query: 9 PILGICLGFELLL-------------FVENKEKELRTDCNCFHENLSLRFLKNGSKTGLY 55
PILGICLG +L L F+E + + D N ++ L+ ++ LY
Sbjct: 75 PILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLY 134
Query: 56 KTFPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSK 115
+ P+KS +++++ C D +KA G KFV+++Q
Sbjct: 135 QGIPEKS-----DFYFVHSFYVKCK--------------DEFVSAKAQYGHKFVASLQ-- 173
Query: 116 KYPFVGIQFHPEKN 129
K QFHPEK+
Sbjct: 174 KDNIFATQFHPEKS 187
>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 205
Score = 34.0 bits (79), Expect = 0.027
Identities = 32/136 (23%), Positives = 43/136 (31%), Gaps = 39/136 (28%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSL------RFLKNGSKT-------GLY 55
P+LGICLG + LLF ++E E L L RF L
Sbjct: 74 PLLGICLGMQ-LLFESSEE-------FGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLE 125
Query: 56 KTFPKKSLKALAKNNITY---NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTV 112
LK + Y +Y+ D + + G +F + V
Sbjct: 126 LKKESPLLKGIPDGAYVYFVHSYYA-----------DPCDEEYVAATT--DYGVEFPAAV 172
Query: 113 QSKKYPFVGIQFHPEK 128
G QFHPEK
Sbjct: 173 GKDN--VFGAQFHPEK 186
>gnl|CDD|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol
Phosphatase domain of Thermotoga like. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. Thermotoga
PHP is an uncharacterized protein. HisPPase catalyzes
the eighth step of histidine biosynthesis, in which
L-histidinol phosphate undergoes dephosphorylation to
give histidinol. The HisPPase can be classified into two
types: the bifunctional HisPPase found in proteobacteria
that belongs to the DDDD superfamily and the
monofunctional Bacillus subtilis type that is a member
of the PHP family. The PHP domain has four conserved
sequence motifs and contains an invariant histidine that
is involved in metal ion coordination. The PHP domain of
HisPPase is structurally homologous to other members of
the PHP family that have a distorted (beta/alpha)7
barrel fold with a trinuclear metal site on the
C-terminal side of the barrel.
Length = 226
Score = 33.2 bits (76), Expect = 0.056
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 89 KLSDAWDILTESKAGNGKKFVSTVQSKKYPFVG-IQFHPEKNSYEWNTV 136
L DAW+I N + V KK P++ FH K+ Y W T+
Sbjct: 157 HLFDAWEI------ANRDDLFNVVGLKKLPYIANSDFHKPKHLYSWKTL 199
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. This protein of purine
de novo biosynthesis is well-conserved. However, it
appears to split into two separate polypeptide chains in
most of the Archaea. This N-terminal region would be the
smaller subunit [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 188
Score = 32.3 bits (74), Expect = 0.084
Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 43/148 (29%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAK 68
P+LGIC G +L+ E R + + + L L L++ P +S
Sbjct: 72 PVLGICYGMQLMAKQLGGEVG-RAEKREYGK-AELEILDEDD---LFRGLPDEST----- 121
Query: 69 NNITYNYHIWCITRATMNS----TKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQF 124
+W M+ +L + + +L S V+ + ++ P G+QF
Sbjct: 122 --------VW------MSHGDKVKELPEGFKVLATSDNCP----VAAMAHEEKPIYGVQF 163
Query: 125 HPEKNSYEWNTVAHVNHSRIAIETSRLF 152
HPE V H+ E F
Sbjct: 164 HPE-----------VTHTEYGNELLENF 180
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase
(GATase1)-like domain. Type 1 glutamine
amidotransferase (GATase1)-like domain. This group
includes proteins similar to Class I glutamine
amidotransferases, the intracellular PH1704 from
Pyrococcus horikoshii, the C-terminal of the large
catalase: Escherichia coli HP-II, Sinorhizobium
meliloti Rm1021 ThuA. and, the A4 beta-galactosidase
middle domain. The majority of proteins in this group
have a reactive Cys found in the sharp turn between a
beta strand and an alpha helix termed the nucleophile
elbow. For Class I glutamine amidotransferases
proteins which transfer ammonia from the amide side
chain of glutamine to an acceptor substrate, this Cys
forms a Cys-His-Glu catalytic triad in the active site.
Glutamine amidotransferases activity can be found in a
range of biosynthetic enzymes included in this cd:
glutamine amidotransferase, formylglycinamide
ribonucleotide, GMP synthetase, anthranilate synthase
component II, glutamine-dependent carbamoyl phosphate
synthase, cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as
CPSase.
Length = 115
Score = 31.0 bits (70), Expect = 0.14
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 9 PILGICLGFELLLF 22
PILGICLG +LL+
Sbjct: 81 PILGICLGAQLLVL 94
>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II;
Provisional.
Length = 189
Score = 31.6 bits (73), Expect = 0.14
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 112 VQSKKYPFVGIQFHPE 127
V+ K+ P G+QFHPE
Sbjct: 155 VRHKELPIYGVQFHPE 170
Score = 27.4 bits (62), Expect = 4.4
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 9 PILGICLG 16
PILG+CLG
Sbjct: 74 PILGVCLG 81
>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 354
Score = 31.8 bits (73), Expect = 0.18
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 8 FPILGICLGFELL 20
+PILGICLG +L+
Sbjct: 238 YPILGICLGHQLI 250
>gnl|CDD|171871 PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 192
Score = 31.3 bits (71), Expect = 0.24
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEKN 129
G + VQ Y +GIQFHPEK+
Sbjct: 151 GADIPAIVQFNNY--IGIQFHPEKS 173
>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
Provisional.
Length = 208
Score = 31.4 bits (71), Expect = 0.25
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 9 PILGICLGFELLL 21
P+LGICLGF+ LL
Sbjct: 75 PLLGICLGFQALL 87
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 30.2 bits (69), Expect = 0.43
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEKNS 130
G+ F + +Q F G+QFHPE++
Sbjct: 160 GEPFSAAIQKDN--FFGVQFHPERSG 183
Score = 28.3 bits (64), Expect = 2.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 9 PILGICLGFELL 20
P+LGICLG +LL
Sbjct: 72 PVLGICLGMQLL 83
>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
proteobacterial clade. This model represents a small
clade of anthranilate synthases from alpha
proteobacteria and Nostoc (a cyanobacterium). This
enzyme is the first step in the pathway for the
biosynthesis of tryprophan from chorismate [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 717
Score = 31.0 bits (70), Expect = 0.48
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAK 68
P+ G+CLG + + VE L L +G + + P L +
Sbjct: 590 PVFGVCLGLQGM--VEAFGGALDV----------LPEPVHGKASRIRVLGPDALFAGLPE 637
Query: 69 NNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
YH +L + ES G + ++ ++ P +QFHPE
Sbjct: 638 RLTVGRYH-----SLFARRDRLPAELTVTAESADG----LIMAIEHRRLPLAAVQFHPE 687
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This
group contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole
glycerol phosphate synthase and, cobyric acid synthase.
Glutamine amidotransferase (GATase) domains can occur
either as single polypeptides, as in glutamine
amidotransferases, or as domains in a much larger
multifunctional synthase protein, such as CPSase.
Length = 188
Score = 29.9 bits (68), Expect = 0.63
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 7 YFPILGICLGFELL 20
P+LGICLG +LL
Sbjct: 81 GKPVLGICLGHQLL 94
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to
be a serine peptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic
triad of typical GATase1 domains, by having a Ser in
place of the reactive Cys at the nucleophile elbow. The
E. coli HP-II C-terminal domain, S. meliloti Rm1021
ThuA and the A4 beta-galactosidase middle domain lack
the catalytic triad typical GATaseI domains.
GATase1-like domains can occur either as single
polypeptides, as in Class I glutamine
amidotransferases, or as domains in a much larger
multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 28.7 bits (64), Expect = 0.64
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 9 PILGICLGFELL 20
P+LGICLG +LL
Sbjct: 81 PVLGICLGAQLL 92
>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate
synthase or aminodeoxychorismate synthase. This model
describes the glutamine amidotransferase domain or
peptide of the tryptophan-biosynthetic pathway enzyme
anthranilate synthase or of the folate biosynthetic
pathway enzyme para-aminobenzoate synthase. In at least
one case, a single polypeptide from Bacillus subtilis
was shown to have both functions. This model covers a
subset of the sequences described by the PFAM model
GATase.
Length = 188
Score = 29.8 bits (67), Expect = 0.65
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 25/121 (20%)
Query: 9 PILGICLGFELLLFVENKE-KELRTDCNCFHENLS-LRFLKNGSKTGLYKTFPKKSLKAL 66
PILG+CLG + + + T H S + G GL+
Sbjct: 74 PILGVCLGHQAMGQAFGGDVVRANT---VMHGKTSEIEHNGAGIFRGLFNPLT------- 123
Query: 67 AKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHP 126
YH + T+ + AW+ N + + ++ + P G+QFHP
Sbjct: 124 -----ATRYHSLVVEPETLPTCFPVTAWEEE------NIE--IMAIRHRDLPLEGVQFHP 170
Query: 127 E 127
E
Sbjct: 171 E 171
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent
form of carbamoyl phosphate synthase, CPSase II. This
group of sequences represents the small chain of the
glutamine-dependent form of carbamoyl phosphate
synthase, CPSase II. CPSase II catalyzes the
production of carbomyl phosphate (CP) from bicarbonate,
glutamine and two molecules of MgATP. The reaction is
believed to proceed by a series of four biochemical
reactions involving a minimum of three discrete highly
reactive intermediates. The synthesis of CP is critical
for the initiation of two separate biosynthetic
pathways. In one CP is coupled to aspartate, its carbon
and nitrogen nuclei ultimately incorporated into the
aromatic moieties of pyrimidine nucleotides. In the
second pathway CP is condensed with ornithine at the
start of the urea cycle and is utilized for the
detoxification of ammonia and biosynthesis of arginine.
CPSases may be encoded by one or by several genes,
depending on the species. The E.coli enzyme is a
heterodimer consisting of two polypeptide chains
referred to as the small and large subunit. Ammonia an
intermediate during the biosynthesis of carbomyl
phosphate produced by the hydrolysis of glutamine in
the small subunit of the enzyme is delivered via a
molecular tunnel between the remotely located
carboxyphosphate active site in the large subunit.
CPSase IIs belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. This
group also contains the sequence from the mammalian
urea cycle form which has lost the active site Cys,
resulting in an ammonia-dependent form, CPSase I.
Length = 178
Score = 29.4 bits (67), Expect = 0.79
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
PI GICLG +LL
Sbjct: 71 PIFGICLGHQLL 82
Score = 26.7 bits (60), Expect = 7.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 115 KKYPFVGIQFHPE 127
K P +QFHPE
Sbjct: 150 KDLPVFSVQFHPE 162
>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II;
Provisional.
Length = 190
Score = 29.7 bits (67), Expect = 0.82
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 33/124 (26%)
Query: 10 ILGICLGFELLLFVENKEKELRTDCNCFHENL-SLRFLKNGSKTGLYKTFPKKSLKALAK 68
ILG+CLG + L C F L +L +++G + L L +
Sbjct: 75 ILGVCLGHQTL-------------CEFFGGELYNLNNVRHGQQRPLKVRSNSPLFDGLPE 121
Query: 69 N-NITYNYHIWCITR----ATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQ 123
NI YH W ++ + T + D + V +Q K P G+Q
Sbjct: 122 EFNIGL-YHSWAVSEENFPTPLEITAVCD-------------ENVVMAMQHKTLPIYGVQ 167
Query: 124 FHPE 127
FHPE
Sbjct: 168 FHPE 171
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 30.0 bits (68), Expect = 0.88
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 88 TKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIE 147
KL + ++++ +S G V +++++ G+Q+HPE V HS +E
Sbjct: 149 VKLPEGFEVVAKSVQGA----VVAIENRERRIYGLQYHPE-----------VTHSPKGME 193
Query: 148 TSRLF 152
T R F
Sbjct: 194 TLRHF 198
>gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 29.4 bits (67), Expect = 1.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 91 SDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEK 128
++ D++ G F + V + QFHPEK
Sbjct: 159 ANPADVVAW--TDYGGPFTAAV--ARDNLFATQFHPEK 192
>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEK 128
G +F + V + G QFHPEK
Sbjct: 161 GIEFPAAVCND--NVFGTQFHPEK 182
>gnl|CDD|233774 TIGR02195, heptsyl_trn_II, lipopolysaccharide heptosyltransferase
II. This family consists of examples of ADP-heptose:LPS
heptosyltransferase II, an enzyme of LPS inner core
region biosynthesis. LPS, composed of lipid A, a core
region, and O antigen, is found in the outer membrane of
Gram-negative bacteria [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 334
Score = 29.3 bits (66), Expect = 1.4
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 19/73 (26%)
Query: 49 GSKTGLYKTFPKKSLKALAKNNITYNYHIWC------------ITRATMN-------STK 89
G++ G K +P + LAK I Y + I T
Sbjct: 182 GAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETS 241
Query: 90 LSDAWDILTESKA 102
L +A D++ +KA
Sbjct: 242 LDEAVDLIALAKA 254
>gnl|CDD|233097 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type. This
model represents the signal peptide peptidase A (SppA,
protease IV) as found in E. coli, Treponema pallidum,
Mycobacterium leprae, and several other species, in
which it has a molecular mass around 67 kDa and a
duplication such that the N-terminal half shares
extensive homology with the C-terminal half. This enzyme
was shown in E. coli to form homotetramers. E. coli
SohB, which is most closely homologous to the C-terminal
duplication of SppA, is predicted to perform a similar
function of small peptide degradation, but in the
periplasm. Many prokaryotes have a single SppA/SohB
homolog that may perform the function of either or both
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 584
Score = 29.0 bits (65), Expect = 1.7
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 64 KALAKNNITYNYHI-WCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGI 122
KA + + + AT+ S L + WD L + + ++ +
Sbjct: 517 KAAKLAHCREQWSVEVYKDSATLGSELLQNLWDGLQKRSLAFLPAPLVILEREWGELA-- 574
Query: 123 QFHPEKNSY 131
QF+ K +Y
Sbjct: 575 QFNDPKGTY 583
>gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in Cytidine Triphosphate
Synthetase. Type 1 glutamine amidotransferase (GATase1)
domain found in Cytidine Triphosphate Synthetase (CTP).
CTP is involved in pyrimidine
ribonucleotide/ribonucleoside metabolism. CTPs produce
CTP from UTP and glutamine and regulate intracellular
CTP levels through interactions with four ribonucleotide
triphosphates. The enzyme exists as a dimer of identical
chains that aggregates as a tetramer. CTP is derived
form UTP in three separate steps involving two active
sites. In one active site, the UTP O4 oxygen is
activated by Mg-ATP-dependent phosphorylation, followed
by displacement of the resulting 4-phosphate moiety by
ammonia. At a separate site, ammonia is generated via
rate limiting glutamine hydrolysis (glutaminase)
activity. A gated channel that spans between the
glutamine hydrolysis and amidoligase active sites
provides a path for ammonia diffusion. CTPs belong to
the triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 235
Score = 28.7 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 109 VSTVQSKKYP-FVGIQFHPEKNS 130
V V+ +P FVG QFHPE S
Sbjct: 200 VEIVELPDHPFFVGTQFHPEFKS 222
>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase
glutamine amidotransferase component II; Validated.
Length = 195
Score = 28.6 bits (64), Expect = 1.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 75 YHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
YH + + T L D ++ + ++ G + ++ K P G+QFHPE
Sbjct: 127 YHSLIVKKET-----LPDCLEVTSWTEEGE----IMAIRHKTLPIEGVQFHPE 170
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEK 128
G +F+++V+ K +QFHPEK
Sbjct: 173 GGEFIASVR--KGNVHAVQFHPEK 194
>gnl|CDD|182323 PRK10236, PRK10236, hypothetical protein; Provisional.
Length = 237
Score = 28.4 bits (63), Expect = 2.3
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 89 KLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVA 137
+L++ +LT ++ GK +S+V + F ++ HPE++ W +A
Sbjct: 21 QLANFARLLTHNE--KGKTRLSSVLMRNELFKSMEGHPEQHRRNWQLIA 67
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 7 YFPILGICLGFELL 20
P+LGICLG +LL
Sbjct: 79 GKPVLGICLGHQLL 92
Score = 26.8 bits (60), Expect = 7.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 118 PFVGIQFHPE 127
G+QFHPE
Sbjct: 167 RAYGVQFHPE 176
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 189
Score = 27.9 bits (63), Expect = 2.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
PILGIC G +LL
Sbjct: 102 PILGICRGMQLL 113
Score = 27.2 bits (61), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 114 SKKYPFV-GIQFHPE 127
S PFV G+Q+HPE
Sbjct: 158 SPDRPFVLGVQWHPE 172
>gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 28.3 bits (64), Expect = 3.0
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 105 GKKFVSTVQSKKYP-FVGIQFHPEKNS 130
V V+ +P FV QFHPE S
Sbjct: 484 DGGLVEIVELPDHPFFVATQFHPEFKS 510
Score = 27.5 bits (62), Expect = 5.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 9 PILGICLGFEL 19
P LGICLG +L
Sbjct: 374 PFLGICLGMQL 384
>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
Length = 184
Score = 27.9 bits (63), Expect = 3.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 9 PILGICLGFELL 20
PILGICLG +L+
Sbjct: 69 PILGICLGHQLI 80
>gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 28.1 bits (64), Expect = 3.4
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 FVGIQFHPE 127
FVG+QFHPE
Sbjct: 499 FVGVQFHPE 507
>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
Reviewed.
Length = 360
Score = 27.7 bits (63), Expect = 3.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
PI GICLG +LL
Sbjct: 250 PIFGICLGHQLL 261
>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 27.7 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 109 VSTVQSKKYPFV-GIQFHPEKNSYEWNT 135
V V+ K FV G+Q+HPE Y +T
Sbjct: 199 VEAVEVKNDAFVLGVQWHPE---YLVDT 223
Score = 26.5 bits (59), Expect = 8.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
PILGIC G +LL
Sbjct: 109 PILGICRGLQLL 120
>gnl|CDD|215186 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 27.7 bits (62), Expect = 4.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 119 FVGIQFHPEKNS 130
FVG+QFHPE S
Sbjct: 519 FVGVQFHPEFKS 530
>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 27.1 bits (60), Expect = 7.1
Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 41/157 (26%)
Query: 9 PILGICLGFELLLFVENKE------------KELRTD-CNCFHENLSLRFLKNGSKTGLY 55
PILG+CLG + L +V E+ + C F + S R +G K Y
Sbjct: 164 PILGVCLGHQALGYVHGARIVHAPEPVHGRLSEIEHNGCRLFDDIPSGR--NSGFKVVRY 221
Query: 56 -------KTFPKK-----------SLKALAKNN-----ITYNYHIWCITRATMNSTKLSD 92
++ PK+ +L L Y I + S+KL +
Sbjct: 222 HSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKN 281
Query: 93 --AWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
+W + NGK + + S + P G+QFHPE
Sbjct: 282 GTSWPSSHSERMQNGKILMGIMHSTR-PHYGLQFHPE 317
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL. All proteins in
this family for which the functions are known are
involved in the process of generalized mismatch repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 312
Score = 26.8 bits (60), Expect = 7.8
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 38 HENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNI 71
H ++S +G K T P +S K ++
Sbjct: 182 HPDISFSLTHDGKKVLQLSTKPNQSTKENRIRSV 215
>gnl|CDD|232926 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in
pyrimidine ribonucleotide/ribonucleoside metabolism. The
enzyme catalyzes the reaction L-glutamine + H2O + UTP +
ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
exists as a dimer of identical chains that aggregates as
a tetramer. This gene has been found circa 500 bp 5'
upstream of enolase in both beta (Nitrosomonas europaea)
and gamma (E.coli) subdivisions of proteobacterium (FEMS
Microbiol Lett 1998 Aug 1;165(1):153-7) [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 525
Score = 26.9 bits (60), Expect = 8.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 97 LTESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNS 130
L S + V ++ +P FV QFHPE S
Sbjct: 476 LIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTS 510
>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino
acid transport and metabolism / Nucleotide transport and
metabolism].
Length = 368
Score = 26.8 bits (60), Expect = 8.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
PI GICLG +LL
Sbjct: 252 PIFGICLGHQLL 263
>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
subunit. This model represents the whole of the small
chain of the glutamine-dependent form (EC 6.3.5.5) of
carbamoyl phosphate synthase, CPSase II. The C-terminal
domain has glutamine amidotransferase activity. Note
that the sequence from the mammalian urea cycle form has
lost the active site Cys, resulting in an
ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
of pyrimidine biosynthesis, arginine biosynthesis, and
the urea cycle may be encoded by one or by several
genes, depending on the species [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 358
Score = 26.8 bits (60), Expect = 9.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 8 FPILGICLGFELL 20
PI GICLG +LL
Sbjct: 244 IPIFGICLGHQLL 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,798,021
Number of extensions: 843443
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 88
Length of query: 202
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 110
Effective length of database: 6,857,034
Effective search space: 754273740
Effective search space used: 754273740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)