RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15935
(202 letters)
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 157 bits (399), Expect = 1e-47
Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 1 MNSRGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPK 60
GDYFP+ G CLGFE L + + + L T + + L F + +++ FP
Sbjct: 118 SFDDGDYFPVWGTCLGFEELSLLISG-ECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPT 176
Query: 61 KSLKALAKNNITYNYHIWCITRATM-NSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPF 119
+ L +LA +T N+H W ++ + KL +++LT + G +F+ST++ KYP
Sbjct: 177 ELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDG-KIEFISTMEGYKYPV 235
Query: 120 VGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHAYPSHADLYKEVIY 179
G+Q+HPEK YEW + ++H+ A++T+ ++ V EA KN H + S ++ K +IY
Sbjct: 236 YGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIY 295
Query: 180 NYAPTMSYPLNNKTSFEQIYFFD 202
++P + + +SF+Q Y FD
Sbjct: 296 QFSPIYTGNI---SSFQQCYIFD 315
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 34.0 bits (79), Expect = 0.018
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEK 128
G F + + K + QFHPEK
Sbjct: 160 GTPFTALLA--KENLLAPQFHPEK 181
Score = 27.5 bits (62), Expect = 2.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 9 PILGICLGFELLL 21
P LGIC+G ++L
Sbjct: 77 PFLGICVGMQVLY 89
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 33.6 bits (78), Expect = 0.023
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 105 GKKFVSTVQSKKYPFVGIQFHPEK 128
G+ F S V+ + +G QFHPEK
Sbjct: 160 GEIFPSAVRKGR--ILGFQFHPEK 181
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 32.8 bits (76), Expect = 0.043
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 112 VQSKKYPFVGIQFHPE 127
+ ++YP G+QFHPE
Sbjct: 162 IHHEEYPIYGVQFHPE 177
Score = 27.0 bits (61), Expect = 3.9
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 9 PILGICLG 16
PILG+CLG
Sbjct: 79 PILGVCLG 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.055
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 95 DILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYD 154
L + +KFV V Y F+ E+ T ++ +++F
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 155 WIVT 158
+ V+
Sbjct: 129 YNVS 132
Score = 26.7 bits (58), Expect = 6.1
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 64/132 (48%)
Query: 133 WNTVAHVNHSRI--AIETS----------RLFYD------------------W------- 155
W+ HVN ++ IE+S ++F W
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 156 ---IVTEASK----NKHAYPS----HADLY--------------KEVIYNYAPTMSYPLN 190
+V + K K S +Y + ++ +Y ++ +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 191 NKT-SFEQIYFF 201
+ + YF+
Sbjct: 463 DLIPPYLDQYFY 474
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 32.0 bits (74), Expect = 0.082
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 112 VQSKKYPFVGIQFHPE 127
V+ G QFHPE
Sbjct: 156 VRHDADRVCGFQFHPE 171
Score = 27.0 bits (61), Expect = 3.3
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 9 PILGICLG 16
PI+GICLG
Sbjct: 78 PIIGICLG 85
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 31.7 bits (72), Expect = 0.14
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFP--------- 59
PI+GI +G + L F + E T N LS RF + K P
Sbjct: 81 PIMGIXVGLQAL-FAGSVESPKSTGLNYIDFKLS-RFDDSE------KPVPEIGWNSCIP 132
Query: 60 -KKSLKALAKNNITY---NYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSK 115
+ L Y ++ I + +D W + ++K G+ ++F++ V
Sbjct: 133 SENLFFGLDPYKRYYFVHSFA--AILNSEKKKNLENDGW-KIAKAKYGS-EEFIAAVN-- 186
Query: 116 KYPFVGIQFHPEK 128
K QFHPEK
Sbjct: 187 KNNIFATQFHPEK 199
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 31.4 bits (72), Expect = 0.16
Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 39/152 (25%)
Query: 9 PILGICLGFELLLF-----VENKEK------ELRTDCNCFHENLSLRFLKNGSKTGLYKT 57
PI GIC G + + V+ + ++ N N++ S + +
Sbjct: 85 PIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLY 144
Query: 58 FPKKSLK---ALAKNNITYNYHIWCITRATMN----STKLSDAWDILTESKAGNGKKFVS 110
K + L +N + +W MN TK+ + + +++ S+ +
Sbjct: 145 SNYKLMNETCCLFENIKSDITTVW------MNHNDEVTKIPENFYLVSSSENCL----IC 194
Query: 111 TVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHS 142
++ +K+Y G+Q+HPE V S
Sbjct: 195 SIYNKEYNIYGVQYHPE-----------VYES 215
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 31.0 bits (70), Expect = 0.29
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 28/120 (23%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFH-ENLSLRFLKNGSKTGLYKTFPKKSLKALA 67
P + +CL ++L L + + + G Y T+ ++++
Sbjct: 523 PFMAVCLSHQIL--NAILGIPLVRREVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEM 580
Query: 68 KNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
+ I+R V ++ F +QFH E
Sbjct: 581 DVD---GVGTVAISRDPRTGE--------------------VHALRGP--TFSSMQFHAE 615
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.76
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 39 ENLSLRFLKNGSKTGLYKTFPKKSLKALAKN 69
E +L+ L+ K LY S ALA
Sbjct: 18 EKQALKKLQASLK--LYA--DD-SAPALAIK 43
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 28.8 bits (65), Expect = 0.87
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 34/124 (27%)
Query: 9 PILGICLGFELLLF-----VENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSL 63
PILGICLG +L+ V EK E + S + +
Sbjct: 74 PILGICLGHQLIAKFFGGKVGRGEK---------AE-----Y----SLVEIEIIDEXEIF 115
Query: 64 KALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQ 123
K L K + H +L + IL S+ + ++ ++ P G+Q
Sbjct: 116 KGLPKRLKVWESH-------MDEVKELPPKFKILARSETCP----IEAMKHEELPIYGVQ 164
Query: 124 FHPE 127
FHPE
Sbjct: 165 FHPE 168
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 106 KKFVSTVQSKKYP-FVGIQFHPEKNS 130
+ V ++ +P FV QFHPE S
Sbjct: 495 DQLVEIIEVPNHPWFVACQFHPEFTS 520
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 28.1 bits (63), Expect = 1.5
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 8 FPILGICLGFELLLFVENKEKELRTDCNCFH-ENLSLRFLKNGSKTGLYKTFPKKSLKAL 66
PILG C G LL K + +++++ G + ++ K L
Sbjct: 69 LPILGTCAGMVLL------SKGTGINQILLELMDITVKRNAYGRQVDSFEKEI--EFKDL 120
Query: 67 AKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHP 126
K + + + SD +++ + V+ K ++ + FHP
Sbjct: 121 GKVYGVFIRAPV-VDKIL------SDDVEVIAR-----DGDKIVGVKQGK--YMALSFHP 166
Query: 127 EKNS 130
E +
Sbjct: 167 ELSE 170
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail,
evolution, structur comparisons, virus-viral protein
complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Length = 602
Score = 28.7 bits (63), Expect = 1.6
Identities = 21/155 (13%), Positives = 37/155 (23%), Gaps = 6/155 (3%)
Query: 46 LKNGSKTGLYKTFPKKSLKALA---KNNITYNYHIWCITRATMNSTKLSDAWDILTESKA 102
L + K G +S + N Y I I +N +
Sbjct: 422 LTDFDKIGWPNVEAVQSYQREFNAVSNIFDTIYPIGTIYENAVNPNNPVTYMGFGSWKLF 481
Query: 103 GNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASK 162
G GK V + P + + + +H + L + +
Sbjct: 482 GQGKVLVGWNEDISDPNFALNNNDLDSGG---NPSHTAGGTGGSTSVTLENTNLPATETD 538
Query: 163 NKHAYPSHADLYKEVIYNYAPTMSYPLNNKTSFEQ 197
+ Y P S P+ K +
Sbjct: 539 EEVLIVDENGSVIVGGCQYDPDESGPIYTKYREAK 573
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 27.7 bits (61), Expect = 2.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 151 LFYDWIVTEASKNKHAYPSHADLYKEV 177
+ +WI+ +A ++K PS +LYK+
Sbjct: 15 EYGEWILEQAGEDKENLPSDVELYKKA 41
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 27.9 bits (63), Expect = 2.1
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 11/31 (35%)
Query: 112 VQSKKYPFVGIQFHPEKNSYEWNTVAHVNHS 142
K P QFHPE V H+
Sbjct: 166 FYHKTRPIYATQFHPE-----------VEHT 185
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 28.2 bits (64), Expect = 2.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 119 FVGIQFHPE 127
F+G+Q HPE
Sbjct: 516 FLGLQSHPE 524
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A
{Sulfolobus solfataricus}
Length = 535
Score = 28.2 bits (64), Expect = 2.1
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 119 FVGIQFHPE 127
FV Q HPE
Sbjct: 505 FVATQAHPE 513
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 27.8 bits (63), Expect = 2.5
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 11/25 (44%)
Query: 118 PFVGIQFHPEKNSYEWNTVAHVNHS 142
F G+QFHPE V H+
Sbjct: 177 RFFGLQFHPE-----------VTHT 190
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 27.5 bits (62), Expect = 2.6
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 11/25 (44%)
Query: 118 PFVGIQFHPEKNSYEWNTVAHVNHS 142
G QFHPE V +
Sbjct: 182 KLYGAQFHPE-----------VGLT 195
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 27.8 bits (63), Expect = 2.6
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 11/25 (44%)
Query: 118 PFVGIQFHPEKNSYEWNTVAHVNHS 142
F G+QFHPE V H+
Sbjct: 174 RFYGVQFHPE-----------VTHT 187
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 27.6 bits (62), Expect = 2.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 9 PILGICLGFELL 20
PI IC G +L+
Sbjct: 110 PIFAICRGMQLV 121
Score = 26.9 bits (60), Expect = 4.5
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 119 FVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHAYPSH 170
++G+Q+HPE S + +V E+ K H
Sbjct: 212 YLGVQWHPELMFQT-------------DPESEQLFQALVDESKKTMVKEGHH 250
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 27.3 bits (60), Expect = 3.1
Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 14/133 (10%)
Query: 4 RGDYFPILGICLGFELLL-FVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYK-----T 57
PI G C G LL VEN + L + +N +
Sbjct: 77 HVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLN 136
Query: 58 FPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKY 117
S + + L+ T S G ++ V+
Sbjct: 137 IISDSSAFKKDLTAACIRAPYIREILSDEVKVLA------TFSHESYGPNIIAAVEQNN- 189
Query: 118 PFVGIQFHPEKNS 130
+G FHPE
Sbjct: 190 -CLGTVFHPELLP 201
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 27.6 bits (62), Expect = 3.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 11/34 (32%)
Query: 109 VSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHS 142
V+ + ++ G QFHPE V +
Sbjct: 178 VAGIANESKKLYGAQFHPE-----------VGLT 200
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 27.4 bits (62), Expect = 3.6
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 11/25 (44%)
Query: 118 PFVGIQFHPEKNSYEWNTVAHVNHS 142
G+QFHPE V H+
Sbjct: 157 RAYGVQFHPE-----------VAHT 170
Score = 25.9 bits (58), Expect = 9.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
P+LGIC G +LL
Sbjct: 73 PLLGICYGMQLL 84
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 26.7 bits (59), Expect = 5.1
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 120 VGIQFHPE 127
VG+QFH E
Sbjct: 180 VGLQFHIE 187
Score = 25.9 bits (57), Expect = 9.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 8 FPILGICLGFELL 20
P LGICLG ++L
Sbjct: 94 IPFLGICLGSQML 106
>3p0k_A Sulfhydryl oxidase; 4-helix bundle, 5-helix bundle, flavin
adenine dinucleotide, oxidoreductase, viral protein;
HET: FAD; 1.47A {Autographa californica
nucleopolyhedro} PDB: 3qzy_A*
Length = 266
Score = 26.5 bits (58), Expect = 6.0
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 54 LYKTFPKKSLKALAKNNITYNYHIWCIT 81
L + L L + TY YH C+
Sbjct: 26 LLRASKSTHLTKLLSSQATYLYHFACLM 53
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 26.3 bits (58), Expect = 6.2
Identities = 3/8 (37%), Positives = 3/8 (37%)
Query: 120 VGIQFHPE 127
Q H E
Sbjct: 174 YAFQCHLE 181
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase;
glutaminase domain, trypsanosoma brucei, ligase,
acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Length = 273
Score = 26.4 bits (58), Expect = 6.9
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 98 TESKAGNGKKFVSTVQSKKYP-FVGIQFHPEKNS 130
+ + V V++ F+ +QFHPE S
Sbjct: 205 VTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFIS 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 6.9
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 4 RGDYFPILGICLGFELLLFVENKEKELRTDCNCFHEN-LSLRFLKNGSKTGLYKTFPK-- 60
R D GF +L V N L H + ++ +++T
Sbjct: 1648 RADNH--FKDTYGFSILDIVINNPVNLT-----IHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 61 -KSLKALAKNNITYNYHIWCITRATMNSTKLSD-AWDILTESKA 102
K+ K + N + + + +++T+ + A + KA
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA--LTLMEKA 1742
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 26.3 bits (59), Expect = 7.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 9 PILGICLGFELL 20
P+ GICLG +LL
Sbjct: 263 PVFGICLGHQLL 274
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 26.3 bits (58), Expect = 7.9
Identities = 4/8 (50%), Positives = 5/8 (62%)
Query: 120 VGIQFHPE 127
+G Q H E
Sbjct: 171 IGFQCHIE 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,962,895
Number of extensions: 154925
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 46
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)