RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15935
(202 letters)
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 128 bits (323), Expect = 3e-37
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 4/201 (1%)
Query: 2 NSRGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKK 61
GDYFP+ G CLGFE L + + L T + + L F + +++ FP +
Sbjct: 92 FDDGDYFPVWGTCLGFEEL-SLLISGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTE 150
Query: 62 SLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVG 121
L +LA +T N+H W ++ + + + + +F+ST++ KYP G
Sbjct: 151 LLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYG 210
Query: 122 IQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYDWIVTEASKNKHAYPSHADLYKEVIYNY 181
+Q+HPEK YEW + ++H+ A++T+ ++ V EA KN H + S ++ K +IY +
Sbjct: 211 VQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQF 270
Query: 182 APTMSYPLNNKTSFEQIYFFD 202
+P + N +SF+Q Y FD
Sbjct: 271 SPIYT---GNISSFQQCYIFD 288
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 41.1 bits (95), Expect = 3e-05
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 6/124 (4%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAK 68
PI G C G LL +N E + + + +
Sbjct: 81 PIWGTCAGCILL--SKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIIS 138
Query: 69 NNITYNYHIWCITRATMNSTKL--SDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHP 126
++ + + ++ + + T S G ++ V+ +G FHP
Sbjct: 139 DSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAAVEQNN--CLGTVFHP 196
Query: 127 EKNS 130
E
Sbjct: 197 ELLP 200
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 34.1 bits (77), Expect = 0.006
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 68 KNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
Y H + + L + + ++K G ++F++ V K QFHPE
Sbjct: 142 PYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYG-SEEFIAAVN--KNNIFATQFHPE 198
Query: 128 K 128
K
Sbjct: 199 K 199
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 33.6 bits (76), Expect = 0.010
Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 27/119 (22%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAK 68
P+ GICLG +LL K ++ N
Sbjct: 112 PVFGICLGHQLLALASGA-KTVKMKFGHHGGN--------------------------HP 144
Query: 69 NNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
+ + + + L + + + P Q +PE
Sbjct: 145 VKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPE 203
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 32.0 bits (71), Expect = 0.027
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 73 YNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEK 128
+ ++ G F + + + + QFHPEK
Sbjct: 126 GAFAPLTGRHFYFANSYYGPLTPYSLGKGEYEGTPFTALLAKE--NLLAPQFHPEK 179
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 31.9 bits (71), Expect = 0.033
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 55 YKTFPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQS 114
+ L + N + + +++ + + + + +G+ F S V+
Sbjct: 110 VVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVR- 168
Query: 115 KKYPFVGIQFHPEK 128
K +G QFHPEK
Sbjct: 169 -KGRILGFQFHPEK 181
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 31.0 bits (69), Expect = 0.060
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 9 PILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAK 68
PILG+CLG + + + + +R FH +S L N S LY K+ KA
Sbjct: 79 PILGVCLGHQAIGYAFGAK--IRRARKVFHGKISNIILVNNSPLSLYYGIAKE-FKATRY 135
Query: 69 NNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
+++ + + +++ + ++YP G+QFHPE
Sbjct: 136 HSLVVDEVHRPLIVDAISAEDNEIMA-----------------IHHEEYPIYGVQFHPE 177
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 30.3 bits (68), Expect = 0.10
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 4/73 (5%)
Query: 59 PKKSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYP 118
+ I + + + S V ++ +P
Sbjct: 165 DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQ---LVEIIEVPNHP 221
Query: 119 -FVGIQFHPEKNS 130
FV QFHPE S
Sbjct: 222 WFVACQFHPEFTS 234
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 250
Score = 29.6 bits (66), Expect = 0.21
Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 20/150 (13%)
Query: 1 MNSRGDYFPILGICLGF---------ELLLFVENKEKELRTDCNC-----FHENLSLRFL 46
+R P LGICLG + E E L + L
Sbjct: 81 QYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGL 140
Query: 47 KNGSKTGLYKTFPK---KSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAG 103
+ G + K + K + + + +
Sbjct: 141 GGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGM 200
Query: 104 NGKK--FVSTVQSKKYP-FVGIQFHPEKNS 130
G+ V ++ K +P F+G+Q HPE S
Sbjct: 201 RGRGAGLVEAIELKDHPFFLGLQSHPEFKS 230
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 29.1 bits (64), Expect = 0.26
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 112 VQSKKYPFVGIQFHPE 127
V+ + G QFHPE
Sbjct: 156 VRDDRRRVCGFQFHPE 171
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 28.7 bits (63), Expect = 0.37
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 11/94 (11%)
Query: 34 CNCFHENLSLRFLKNGSKTGLYKTFPKKSLKALAKNNITYNYHIWCITRATMNSTKLSDA 93
F ++ KT + + L + H I + T + +
Sbjct: 87 ALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASS 146
Query: 94 WDILTESKAGNGKKFVSTVQSKKYPFVGIQFHPE 127
+ K P QFHPE
Sbjct: 147 ATCQVQG-----------FYHKTRPIYATQFHPE 169
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 28.3 bits (62), Expect = 0.43
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 20/128 (15%)
Query: 1 MNSRGDYFPILGICLGFELLLFVENKEKELRTDCNCFHENLSLRFLKNGSKTGLYKTFPK 60
P+ G C G +L + + S
Sbjct: 66 REFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGL 125
Query: 61 KSLKALAKNNITYNYHIWCITRATMNSTKLSDAWDILTESKAGNGKKFVSTVQSKKYPFV 120
+ I A N LS+ + + V+ +K+ F+
Sbjct: 126 D------EPFTGVFIRAPHILEAGENVEVLSE-----------HNGRIVA---AKQGQFL 165
Query: 121 GIQFHPEK 128
G FHPE
Sbjct: 166 GCSFHPEL 173
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 28.0 bits (61), Expect = 0.69
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 112 VQSKKYPFVGIQFHPEK 128
++ ++ P G+QFHPE
Sbjct: 153 MKHEELPIYGVQFHPEV 169
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 27.6 bits (60), Expect = 0.86
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 115 KKYPFVGIQFHPEK 128
++ F G+QFHPE
Sbjct: 169 EEKRFYGVQFHPEV 182
>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX {Escherichia
coli [TaxId: 562]}
Length = 182
Score = 26.2 bits (57), Expect = 2.5
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 2/105 (1%)
Query: 95 DILTESKAGNGKKFVSTVQSKKYPFVGIQFHPEKNSYEWNTVAHVNHSRIAIETSRLFYD 154
DI+ + + K + Y G+ K Y + V V ++ + +
Sbjct: 7 DIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVGPVKYTPLKQWIAHGEKG 66
Query: 155 WIVTEASKNKHAYPSHADLYKEVIYNYAPTMSYPLNNKTSFEQIY 199
V + + L + Y + S ++ Y
Sbjct: 67 KYVVRRVEGGLSVEQQQKLAQTAKRYLG--KPYDFSFSWSDDRQY 109
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 25.3 bits (54), Expect = 5.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 118 PFVGIQFHPEKNS 130
F+G FHPE
Sbjct: 168 QFLGCSFHPELTD 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 756,515
Number of extensions: 31875
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 18
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)