BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15936
(665 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 540 bits (1391), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/417 (65%), Positives = 308/417 (73%), Gaps = 29/417 (6%)
Query: 249 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVK 308
G KPY+ KI+E +L + K +N+RRL+AQRN LN KVR ++ GSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 309 PMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLM 368
+ KKVLVKV PEGK+ + RV LR++SY LHK+L NK DPLVSLM
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLM 137
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
MVEKVPDSTY+MVGGL QIKEIKEVIELPVKHPELF++LGIAQPKGV+LYGPPGTGKTL
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVAHHT+C FIRVSG+ELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA 548
VQRTMLELLNQLDGFE +KNIK
Sbjct: 258 VEGSGGGDSEVQRTMLELLNQLDGFETSKNIK---------------------------- 289
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
+IMATNR+DILDPALLRPGRIDRKIEFPPP+ AR +ILRIHSRKMNLTRGINLRK+AE
Sbjct: 290 -IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M G SGA+VKGVCTEAGMYALRERR+HVTQEDFE+AV KVM K+ E +S+ KL+K
Sbjct: 349 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 70/114 (61%)
Query: 126 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVK 185
G KPY+ KI+E +L + K +N+RRL+AQRN LN KVR ++ GSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 186 PMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ KKVLVKV PEGK+ + RV LR++SY LHK+L NK D
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKAD 131
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/309 (49%), Positives = 193/309 (62%), Gaps = 29/309 (9%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
RV + Y + LP ++DP V++M VE+ PD TY VGG +QI++++EV+ELP+ P
Sbjct: 173 RVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSP 232
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVR 462
E F LGI PKG+LLYGPPGTGKTL ARAVA+ T+ TFIRV GSELVQK++GEG+RMVR
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 463 ELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGV 522
ELF MAR IIF VQRTMLEL+ QLDGF+ NI
Sbjct: 293 ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI--- 349
Query: 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582
KV+ ATNR + LDPALLRPGRIDRK+EF P+ E
Sbjct: 350 --------------------------KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383
Query: 583 ARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 642
R +I RIHS+ M++ RGI I+ L P ++GAE++ VCTEAGM+A+R RR T++DF
Sbjct: 384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDF 443
Query: 643 EMAVAKVMQ 651
AV KV+
Sbjct: 444 LKAVDKVIS 452
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 291 bits (745), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 205/319 (64%), Gaps = 29/319 (9%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P C V L +++ ++ +L + DP+VS+M ++K P +Y +GGL++QI+EIKE +ELP+
Sbjct: 143 PGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPL 202
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+ T TF+R+ GSEL+QK++G+G R
Sbjct: 203 THPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPR 262
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+ R++F +A E+APSI+F+ +QRTMLELLNQLDGF+ ++
Sbjct: 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322
Query: 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPP 579
KVIMATN+I+ LDPAL+RPGRIDRKI F P
Sbjct: 323 -----------------------------KVIMATNKIETLDPALIRPGRIDRKILFENP 353
Query: 580 NEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 639
+ + IL IH+ KMNL+ +NL + SGA+++ +CTEAG+ ALRERR+ VT
Sbjct: 354 DLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413
Query: 640 EDFEMAVAKVMQKDSEKNM 658
EDF+ A +VM+ E+N+
Sbjct: 414 EDFKQAKERVMKNKVEENL 432
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 284 bits (727), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 143/283 (50%), Positives = 191/283 (67%), Gaps = 29/283 (10%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M V++ P+ YE +GGL+ Q++EI+EV+ELP+KHPELF+ +GI PKG+LLYGPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+AVA T TFIRV GSELV+KFIGEG+ +V+++F +A+E APSIIF+
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547
VQRT+++LL ++DGF+A ++
Sbjct: 126 RTDALTGGDREVQRTLMQLLAEMDGFDARGDV---------------------------- 157
Query: 548 AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIA 607
K+I ATNR DILDPA+LRPGR DR IE P P+E+ RL+IL+IH+RKMNL +NL +IA
Sbjct: 158 -KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216
Query: 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
++ G GAE+K +CTEAGM A+RE R +VT +DF AV K+M
Sbjct: 217 KMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 186/315 (59%), Gaps = 29/315 (9%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
PN V + +SY + LP++ D V M V++ P TY VGGLD QI+E+ E I LP+
Sbjct: 142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPM 201
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
K + F +GI PKG L+YGPPGTGKTLLARA A T TF++++ +LVQ +IGEG++
Sbjct: 202 KRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAK 261
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF + +
Sbjct: 262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321
Query: 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPP 579
KV+ ATNR+D+LDPALLR GR+DRKIEFP P
Sbjct: 322 -----------------------------KVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352
Query: 580 NEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 639
+E++R IL+IHSRKM IN +++A +GA++K V EAGM ALR + V
Sbjct: 353 SEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412
Query: 640 EDFEMAVAKVMQKDS 654
EDF +++V + S
Sbjct: 413 EDFVEGISEVQARKS 427
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 265 bits (677), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 217/398 (54%), Gaps = 37/398 (9%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
++ QN+R L+ ++ ++ L+ G +GEV+K + ++K +VK ++
Sbjct: 76 QRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGPRYI 128
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
RV L + T+ +ILP + DPLV M + + T++ +GGL
Sbjct: 129 VGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTE 188
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+K+PE+F +GI PKGVLLYGPPGTGKTLLA+AVA FI
Sbjct: 189 QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F A+EH P IIFM +QRT++EL
Sbjct: 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 308
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLR 566
L Q+DGF+ + K+IMATNR D LDPALLR
Sbjct: 309 LTQMDGFD-----------------------------NLGQTKIIMATNRPDTLDPALLR 339
Query: 567 PGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAG 626
PGR+DRK+E P PNE RL+I +IH+ K+ T + ++ G +GA+++ TEAG
Sbjct: 340 PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAG 399
Query: 627 MYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKKL 663
+A+R+ R H+ +D AV KV + K E + +KL
Sbjct: 400 FFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQKL 437
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
++ QN+R L+ ++ ++ L+ G +GEV+K + ++K +VK ++
Sbjct: 76 QRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGPRYI 128
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV L + T+ +ILP + D
Sbjct: 129 VGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETD 164
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 194/354 (54%), Gaps = 32/354 (9%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++P+D+ +V + P+ VAL S L ILP D
Sbjct: 96 IGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSD 155
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+S+M + PD TY VGGLD Q +EI+E +ELP+ +L++ +GI P+GVLLYGPP
Sbjct: 156 SSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPP 215
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKT+L +AVA+ T+ FIRV+GSE V K++GEG RMVR++F +ARE+APSIIF+
Sbjct: 216 GTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
VQR ++ELL Q+DGF+ + N+
Sbjct: 276 SIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV----------------------- 312
Query: 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE--EARLDILRIHSRKMNLTRG 600
KVIMATNR D LDPALLRPGR+DRKIEFP + E RL I + KM+L
Sbjct: 313 ------KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRL-IFGTIASKMSLAPE 365
Query: 601 INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654
+L + SGA + + EAG+ A+R+ R + Q D E A A ++ D+
Sbjct: 366 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 419
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
I + EAG+ A+R+ R + Q D E A A + N +D D
Sbjct: 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFD 425
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 157/284 (55%), Gaps = 30/284 (10%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T++ VGG + I+E+KEV+E +K P F+ +G PKG+LL GPPGTGKTLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
F +SGS+ V+ F+G G+ VR+LF A+ HAP I+F+
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 497 XXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
++T+ +LL ++DGF++ + I V+ ATNR
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGI-----------------------------IVMAATNR 163
Query: 557 IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGA 616
DILDPALLRPGR D+KI PP+ R IL IH+R L +NL IA+ PG GA
Sbjct: 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGA 223
Query: 617 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI 660
+++ + EA + A RE R +T +DFE A+ +V+ + K++ I
Sbjct: 224 DLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKSLLI 267
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 156/284 (54%), Gaps = 30/284 (10%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T++ VGG + I+E+KEV+E +K P F+ +G PKG+LL GPPGTG TLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
F +SGS+ V+ F+G G+ VR+LF A+ HAP I+F+
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 497 XXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
++T+ +LL ++DGF++ + I V+ ATNR
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGI-----------------------------IVMAATNR 163
Query: 557 IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGA 616
DILDPALLRPGR D+KI PP+ R IL IH+R L +NL IA+ PG GA
Sbjct: 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGA 223
Query: 617 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI 660
+++ + EA + A RE R +T +DFE A+ +V+ + K++ I
Sbjct: 224 DLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKSLLI 267
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 152/273 (55%), Gaps = 33/273 (12%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ VGG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE- 321
Query: 498 XVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI 557
+R + +LL +DG ++R HV V+ ATNR
Sbjct: 322 --RRIVSQLLTLMDGL-------------------KQRAHVI----------VMAATNRP 350
Query: 558 DILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAE 617
+ +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A G GA+
Sbjct: 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD 410
Query: 618 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
+ +C+EA + A+R++ + ED E A+VM
Sbjct: 411 LAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 141/260 (54%), Gaps = 29/260 (11%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVF----------------------------- 618
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYA 629
G SGA++ +C A A
Sbjct: 679 TNGFSGADLTEICQRACKLA 698
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 155/281 (55%), Gaps = 33/281 (11%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ VGG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+R + +LL +DG ++R HV V
Sbjct: 316 THGEVE---RRIVSQLLTLMDGL-------------------KQRAHVI----------V 343
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610
+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403
Query: 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 404 HGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMN 443
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 141/260 (54%), Gaps = 29/260 (11%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549
R + ++L ++DG KN+
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVF----------------------------- 156
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 216
Query: 610 MPGASGAEVKGVCTEAGMYA 629
G SGA++ +C A A
Sbjct: 217 TNGFSGADLTEICQRACKLA 236
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 33/273 (12%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE- 321
Query: 498 XVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI 557
+R + +LL +DG ++R HV V+ ATNR
Sbjct: 322 --RRIVSQLLTLMDGL-------------------KQRAHVI----------VMAATNRP 350
Query: 558 DILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAE 617
+ +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A G GA+
Sbjct: 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD 410
Query: 618 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
+ +C+EA + A+R++ + ED E A+VM
Sbjct: 411 LAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 141/260 (54%), Gaps = 29/260 (11%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVF----------------------------- 618
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYA 629
G SGA++ +C A A
Sbjct: 679 TNGFSGADLTEICQRACKLA 698
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 155/281 (55%), Gaps = 33/281 (11%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+R + +LL +DG ++R HV V
Sbjct: 316 THGEVE---RRIVSQLLTLMDGL-------------------KQRAHVI----------V 343
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610
+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403
Query: 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 404 HGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMN 443
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 155/281 (55%), Gaps = 33/281 (11%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+R + +LL +DG ++R HV V
Sbjct: 316 THGEVE---RRIVSQLLTLMDGL-------------------KQRAHVI----------V 343
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610
+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403
Query: 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 404 HGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMN 443
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 155/281 (55%), Gaps = 33/281 (11%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+R + +LL +DG ++R HV V
Sbjct: 316 THGEVE---RRIVSQLLTLMDGL-------------------KQRAHVI----------V 343
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610
+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403
Query: 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 404 HGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMN 443
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 30/283 (10%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M+ E +T+ V G D +E+ E++E ++ P F LG PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A++ AP IIF+
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547
++T+ ++L ++DGFE + I
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI---------------------------- 151
Query: 548 AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIA 607
VI ATNR D+LDPALLRPGR DR++ P+ R IL++H R++ L I+ IA
Sbjct: 152 -IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 210
Query: 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
PG SGA++ + EA ++A R + V+ +FE A K+M
Sbjct: 211 RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 154/290 (53%), Gaps = 30/290 (10%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
++ + P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVA FI SGS+ V+ F+G G+ VR+LF A+ HAP I+F+
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA 548
++T+ +LL ++DGFE I
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAI----------------------------- 170
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
V+ ATNR DILDPALLRPGR DR+I P+ + R ILRIH+R L ++L +A+
Sbjct: 171 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 230
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
PG GA+++ + EA + A RE R +T +D E A +VM ++K++
Sbjct: 231 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSL 280
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 154/290 (53%), Gaps = 30/290 (10%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
++ + P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVA FI SGS+ V+ F+G G+ VR+LF A+ HAP I+F+
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA 548
++T+ +LL ++DGFE I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAI----------------------------- 179
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
V+ ATNR DILDPALLRPGR DR+I P+ + R ILRIH+R L ++L +A+
Sbjct: 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
PG GA+++ + EA + A RE R +T +D E A +VM ++K++
Sbjct: 240 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSL 289
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/76 (98%), Positives = 76/76 (100%)
Query: 579 PNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 638
PNEEARLDIL+IHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 639 QEDFEMAVAKVMQKDS 654
QEDFEMAVAKVMQKDS
Sbjct: 71 QEDFEMAVAKVMQKDS 86
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 4/51 (7%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 36 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 147/274 (53%), Gaps = 30/274 (10%)
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
P+ ++ + G + +E+ E+++ +K+PE + LG PKGVLL GPPGTGKTLLA+AV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXX-XXXXXXXXXXXX 492
A F + GS ++ F+G G+ VR+LF A++ APSIIF+
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 493 XXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
++T+ +LL ++DGF + E A V+
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGS----------------------------ENAPVIVLA 156
Query: 553 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612
ATNR +ILDPAL+RPGR DR++ P+ R++IL++H + + L +NL+++A+L G
Sbjct: 157 ATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAG 216
Query: 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646
+GA++ + EA + A R + V Q+ + AV
Sbjct: 217 LAGADLANIINEAALLAGRNNQKEVRQQHLKEAV 250
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 150/285 (52%), Gaps = 32/285 (11%)
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
PL S++ + P T++ V G + +E+KE++E +K+P F +G PKGVLL GPP
Sbjct: 2 PLGSVLT--EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPP 58
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A+ HAP I+F+
Sbjct: 59 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 118
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
++T+ +LL ++DGFE I
Sbjct: 119 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI----------------------- 155
Query: 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN 602
V+ ATNR DILDPALLRPGR DR+I P+ + R ILRIH+R L ++
Sbjct: 156 ------VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD 209
Query: 603 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647
L +A+ PG GA+++ + EA + A RE R +T +D E A +
Sbjct: 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 147/279 (52%), Gaps = 30/279 (10%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
++ + P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVA FI SGS+ V+ F+G G+ VR+LF A+ HAP I+F+
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA 548
++T+ +LL ++DGFE I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAI----------------------------- 179
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
V+ ATNR DILDPALLRPGR DR+I P+ + R ILRIH+R L ++L +A+
Sbjct: 180 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647
PG GA+++ + EA + A RE R +T +D E A +
Sbjct: 240 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/78 (92%), Positives = 73/78 (93%)
Query: 577 PPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 636
PPPNEEARLDIL+IHSRK NLTRGINLRKIAEL PGASGAEVKGVCTEAG YALRERRVH
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 637 VTQEDFEMAVAKVMQKDS 654
VTQEDFE AVAKV QKDS
Sbjct: 61 VTQEDFEXAVAKVXQKDS 78
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
R + EL G E +KGVCTEAG YALRERRVHVTQEDFE AVAKV
Sbjct: 28 RKIAELXPGASGAE----VKGVCTEAGXYALRERRVHVTQEDFEXAVAKV 73
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 33/289 (11%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
+++ V G+ E++E ++ +K PE F LG PKG LL GPPG GKTLLA+AVA
Sbjct: 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX-XXXXXXXX 495
+ F+ ++G+E V+ G G+ VR LF AR AP I+++
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 496 XXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555
++T+ +LL ++DG T ++ V+ +TN
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVI-----------------------------VLASTN 153
Query: 556 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINL--RKIAELMPGA 613
R DILD AL+RPGR+DR + P + R +I H + + LT+ +++AEL PG
Sbjct: 154 RADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGF 213
Query: 614 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
SGA++ +C EA ++A RE V +FE AV +V+ ++K+ + K
Sbjct: 214 SGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSK 262
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 151/303 (49%), Gaps = 52/303 (17%)
Query: 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432
VP+ T+ +G L++ +E+ I PV++P+ F ALG+ P GVLL GPPG GKTLLA+A
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXX 492
VA+ + FI V G EL+ ++GE R VR++F A+ AP +IF
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 493 XXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
R + +LL ++DG EA + + F MA
Sbjct: 124 TGASV---RVVNQLLTEMDGLEARQQV-----------------------FIMA------ 151
Query: 553 ATNRIDILDPALLRPGRIDRK--IEFPPPNEEARLDILRIHSR---KMNLTRGINLRKIA 607
ATNR DI+DPA+LRPGR+D+ + PPP + RL IL+ ++ K L +NL IA
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPAD--RLAILKTITKNGTKPPLDADVNLEAIA 209
Query: 608 ELM--PGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFEMAVAKVMQKDS 654
+ +GA++ + EA + ALR+ + V+ + FE A KV S
Sbjct: 210 GDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269
Query: 655 EKN 657
+K+
Sbjct: 270 KKD 272
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 133/270 (49%), Gaps = 38/270 (14%)
Query: 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 422
L S ++ EK P+ +E V GL+ + +KE + LPVK P LF G +P G+LLYGPP
Sbjct: 37 LSSAILSEK-PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 93
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MARE+ PSIIF+
Sbjct: 94 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 153
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
+R ELL Q++G + +GV
Sbjct: 154 ALTGTRGEGESEAS---RRIKTELLVQMNG--VGNDSQGVL------------------- 189
Query: 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH-SRKMNLTRGI 601
V+ ATN LD A+ R R +R+I P P+ AR + I+ ++
Sbjct: 190 -------VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKE 240
Query: 602 NLRKIAELMPGASGAEVKGVCTEAGMYALR 631
+ R + + G SG+++ V +A M +R
Sbjct: 241 DYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 135/274 (49%), Gaps = 41/274 (14%)
Query: 361 VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLY 419
+DP +++ + P+ +E V GL+ + +KE + LPVK P LF G +P G+LLY
Sbjct: 2 IDPFTAIL--SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLY 57
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPGTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MARE+ PSIIF+
Sbjct: 58 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 117
Query: 480 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVT 539
+R ELL Q++G + +GV
Sbjct: 118 QVDALTGTRGEGESEAS---RRIKTELLVQMNG--VGNDSQGVL---------------- 156
Query: 540 QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--SRKMNL 597
V+ ATN LD A+ R R +R+I P P+ AR + I+ L
Sbjct: 157 ----------VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL 204
Query: 598 TRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 631
T+ + R + + G SG+++ V +A M +R
Sbjct: 205 TKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIR 237
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 134/271 (49%), Gaps = 40/271 (14%)
Query: 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 422
L S ++ EK P+ +E V GL+ + +KE + LPVK P LF G +P G+LLYGPP
Sbjct: 22 LSSAILSEK-PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 78
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MARE+ PSIIF+
Sbjct: 79 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 138
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
+R ELL Q++G + +GV
Sbjct: 139 ALTGTRGEGESEAS---RRIKTELLVQMNG--VGNDSQGVL------------------- 174
Query: 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--SRKMNLTRG 600
V+ ATN LD A+ R R +R+I P P+ AR + I+ LT+
Sbjct: 175 -------VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE 225
Query: 601 INLRKIAELMPGASGAEVKGVCTEAGMYALR 631
+ R + + G SG+++ V +A M +R
Sbjct: 226 -DYRTLGAMTEGYSGSDIAVVVKDALMQPIR 255
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 128/261 (49%), Gaps = 39/261 (14%)
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARA 432
P+ +E V GL+ + +KE + LPVK P LF G +P G+LLYGPPGTGK+ LA+A
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLAKA 79
Query: 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXX 492
VA TF VS S+LV K++GE ++V++LF MARE+ PSIIF+
Sbjct: 80 VATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGE 139
Query: 493 XXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
+R ELL Q++G + +GV V+
Sbjct: 140 SEAS---RRIKTELLVQMNG--VGNDSQGVL--------------------------VLG 168
Query: 553 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--SRKMNLTRGINLRKIAELM 610
ATN LD A+ R R +R+I P P+ AR + I+ LT+ + R + +
Sbjct: 169 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE-DYRTLGAMT 225
Query: 611 PGASGAEVKGVCTEAGMYALR 631
G SG+++ V +A M +R
Sbjct: 226 EGYSGSDIAVVVKDALMQPIR 246
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 48/317 (15%)
Query: 364 LVSLMMVEKVPDST---YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420
LV L++ E V + + G D + ++E++ LP PELF L A KG+LL+G
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFG 61
Query: 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXX 480
PPG GKTLLARAVA TF+ +S + L K++G+G ++VR LF +AR PSIIF+
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 481 XXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQ 540
+R E L + DG + +
Sbjct: 122 VDSLLSERSSSEHEAS---RRLKTEFLVEFDGLPGNPDGDRIV----------------- 161
Query: 541 EDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL-RIHSRKMNLTR 599
V+ ATNR LD A LR R +++ P+E+ R +L R+ ++ +
Sbjct: 162 ---------VLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD 210
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH------------VTQEDFEMAVA 647
LR++A++ G SG+++ + +A + +RE V +T++DF ++
Sbjct: 211 TEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLK 270
Query: 648 KVMQKDSEKNMSIKKLW 664
++ + + ++++ + W
Sbjct: 271 RIRRSVAPQSLNSYEKW 287
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 136/274 (49%), Gaps = 39/274 (14%)
Query: 364 LVSLMMVEKVPDST---YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420
L +L+M E V + T ++ + G D + ++E++ LP PELF L A +G+LL+G
Sbjct: 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFG 155
Query: 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXX 480
PPG GKT+LA+AVA + TF +S + L K++GEG ++VR LF +ARE PSIIF+
Sbjct: 156 PPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ 215
Query: 481 XXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQ 540
+R E L + DG ++ + + +
Sbjct: 216 VDSLLCERREGEHDAS---RRLKTEFLIEFDGVQSAGDDRVL------------------ 254
Query: 541 EDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN--LT 598
V+ ATNR LD A+LR R +++ PNEE RL +L+ K LT
Sbjct: 255 ---------VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT 303
Query: 599 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 632
+ L ++A + G SG+++ + +A + +RE
Sbjct: 304 QK-ELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 49/317 (15%)
Query: 364 LVSLMMVEKV---PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420
++ L+M E + P +E + G++ IKE++ P+ P++F L PKG+LL+G
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFG 124
Query: 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXX 480
PPGTGKTL+ + +A + TF +S S L K++GEG +MVR LF +AR P++IF+
Sbjct: 125 PPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDE 184
Query: 481 XXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQ 540
+R E L QLDG + E R+
Sbjct: 185 IDSLLSQRGDGEHESS---RRIKTEFLVQLDGATTSS---------------EDRIL--- 223
Query: 541 EDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI-LRIHSRKMNLTR 599
V+ ATNR +D A R R+ +++ P P AR I + + S++
Sbjct: 224 ---------VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS 272
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH------------VTQEDFEMAVA 647
+ +I + SGA++ +C EA + +R + + DFE A
Sbjct: 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFR 332
Query: 648 KVMQKDSEKNMSIKKLW 664
V S K++ + + W
Sbjct: 333 TVRPSVSPKDLELYENW 349
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 41/273 (15%)
Query: 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 422
L +++E+ P+ + V GL+ + +KE + LP+K P LF G P +G+LL+GPP
Sbjct: 120 LQGAIVIER-PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPP 176
Query: 423 GTGKTLLARAVAHHTE-CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXX 481
GTGK+ LA+AVA TF +S S+LV K++GE ++V+ LF +ARE+ PSIIF+
Sbjct: 177 GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFI--- 233
Query: 482 XXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQE 541
+R E L Q+ G GV + +
Sbjct: 234 DEIDSLCGSRSENESEAARRIKTEFLVQMQGV-------GVDNDGIL------------- 273
Query: 542 DFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--SRKMNLTR 599
V+ ATN +LD A+ R R +++I P P AR + R+H S + +LT
Sbjct: 274 --------VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE 323
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRE 632
+ +++ G SGA++ + +A M +R+
Sbjct: 324 A-DFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 40/263 (15%)
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARA 432
P+ + V GL+ + +KE + LP+K P LF G P +G+LL+GPPGTGK+ LA+A
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKA 64
Query: 433 VAHHTE-CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXX 491
VA TF +S S+LV K++GE ++V+ LF +ARE+ PSIIF+
Sbjct: 65 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFI---DEIDSLCGSR 121
Query: 492 XXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+R E L Q+ G GV + + V+
Sbjct: 122 SENESEAARRIKTEFLVQMQGV-------GVDNDGIL---------------------VL 153
Query: 552 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--SRKMNLTRGINLRKIAEL 609
ATN +LD A+ R R +++I P P AR + ++H + + +LT + R++
Sbjct: 154 GATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEA-DFRELGRK 210
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ + +A M +R+
Sbjct: 211 TDGYSGADISIIVRDALMQPVRK 233
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 579 PNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 638
P+ E R +I RIHS+ M++ RGI I+ L P ++GAE++ VCTEAGM+A+R RR T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 639 QEDFEMAVAKVM 650
++DF AV KV+
Sbjct: 68 EKDFLKAVDKVI 79
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+++L ++ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 33 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 79
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 47/69 (68%)
Query: 582 EARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
E R +I RIHS+ ++ RGI I+ L P ++GAE++ VCTEAG +A+R RR T++D
Sbjct: 4 EGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKD 63
Query: 642 FEMAVAKVM 650
F AV KV+
Sbjct: 64 FLKAVDKVI 72
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+++L ++ VCTEAG +A+R RR T++DF AV KVI
Sbjct: 26 ELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKDFLKAVDKVI 72
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 587 ILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646
I + KMNL+ ++L SGA++ +C E+GM A+RE R V +DFE A
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68
Query: 647 AKVMQKDSEKN 657
V++KD +++
Sbjct: 69 KTVIKKDEQEH 79
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 39 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 464
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 464
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 464
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 464
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREH 471
++L+GPPGTGKT LA +A + R+S + G + +RE AR++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQN 101
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 464
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 449
+ VLL GPPGTGKT LA A+A ++ F + GSE+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 464
PK +L GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 449
+ VLL GPPGTGKT LA A+A ++ F GSE+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 391 IKEVIELPVKHPELFDALGIAQPKG----VLLYGP-PGTGKTLLARAVAHHTECTFIRVS 445
I E I LP E F ++ KG ++L+ P PGTGKT +A+A+ H + V+
Sbjct: 25 IDECI-LPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80
Query: 446 GSELVQKFI 454
GS+ F+
Sbjct: 81 GSDCKIDFV 89
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 409 GIAQPK----GVLLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELVQKFIGEGSRMV 461
G+ PK + GP G GKT LARA+A E + IR+ SE ++K G ++
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVS 445
+ L GPPG GKT LA+++A F+R+S
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 456
+LL GP G+GKTL+A+ +A H + + L + ++GE
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGE 116
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 399 VKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
+KH ++F L + +G++L GPPG+GKT++
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 399 VKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
+KH ++F L + +G++L GPPG+GKT++
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 456
+LL GP G+GKTLLA +A + F + L + ++GE
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 456
+LL GP G+GKTLLA +A + F + L + ++GE
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 39/137 (28%)
Query: 349 ESYTLHKILPNKVDPLVSLMMVEK------VPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
Y HK+L ++V+ ++ + K +PD + +Q+ +K V++ P+
Sbjct: 324 SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH-------SQVYAVKTVLQRPLS-- 374
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKF 453
L+ GPPGTGKT+ + + +H C ++ +L +K
Sbjct: 375 --------------LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI 420
Query: 454 IGEGSRMVRELFVMARE 470
G ++VR L +RE
Sbjct: 421 HQTGLKVVR-LCAKSRE 436
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455
VLL GPP +GKT LA +A + FI++ + K IG
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIG 102
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 39/137 (28%)
Query: 349 ESYTLHKILPNKVDPLV------SLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
Y HK+L ++V+ ++ + +PD + +Q+ +K V++ P+
Sbjct: 147 SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH-------SQVYAVKTVLQRPLS-- 197
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKF 453
L+ GPPGTGKT+ + + +H C ++ +L +K
Sbjct: 198 --------------LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI 243
Query: 454 IGEGSRMVRELFVMARE 470
G ++VR L +RE
Sbjct: 244 HQTGLKVVR-LCAKSRE 259
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455
VLL GPP +GKT LA +A + FI++ + K IG
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIG 103
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 39/137 (28%)
Query: 349 ESYTLHKILPNKVDPLV------SLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
Y HK+L ++V+ ++ + +PD + +Q+ +K V++ P+
Sbjct: 148 SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH-------SQVYAVKTVLQRPLS-- 198
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKF 453
L+ GPPGTGKT+ + + +H C ++ +L +K
Sbjct: 199 --------------LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI 244
Query: 454 IGEGSRMVRELFVMARE 470
G ++VR L +RE
Sbjct: 245 HQTGLKVVR-LCAKSRE 260
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
VLL GPPG G+T LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 409 GIAQPKGV--LLYGPPGTGKTLLARAVA 434
+ QPKG+ L+ G PGTGKT +A +A
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIA 31
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 592 SRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
+ KM+L +L + SGA + + EAG+ A+R+ R + Q D E A A ++
Sbjct: 11 ASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 70
Query: 652 KDS 654
D+
Sbjct: 71 TDN 73
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
I + EAG+ A+R+ R + Q D E A A + N +D D
Sbjct: 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFD 79
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHT--ECTFIRVSGSEL 449
+ VL+ G PGTGKT +A +A + F ++GSE+
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 411 AQPKGVLLYGPPGTGKTLLARAVAH 435
A+ KG+ LYG G GK+ L A+AH
Sbjct: 150 AEQKGLYLYGDMGIGKSYLLAAMAH 174
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
VG V ++ +V+VK KF P RVAL ++ + +LP D
Sbjct: 40 VGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKD 99
Query: 363 PLVSLMMVEK 372
P+V VE+
Sbjct: 100 PMVYGFEVEE 109
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
VG V ++ +V+VK KF P RVAL ++ + +LP D
Sbjct: 40 VGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKD 99
Query: 363 PLVSLMMVEK 372
P+V VE+
Sbjct: 100 PMVYGFEVEE 109
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHT--ECTFIRVSGSEL 449
+ VL+ G PGTGKT +A A + F ++GSE+
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEI 123
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGS 458
P + L GP GKT LA A+A C I V S L+ + + G+
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD-SALIYRGMDIGT 49
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452
+ +LYGPPG GKT A VA + + S++ K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVA 434
Q + VLL G PGTGK++L +A+A
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 412 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 452
+P G L+ GP G GKT LA+ +A TE IR+ +E ++K
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 417 LLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIGEGSRMVRELFVM 467
L+ GPPGTGKT+ + + +H C V+ L K G ++VR L
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVR-LTAK 437
Query: 468 AREHAPSII 476
+RE S +
Sbjct: 438 SREDVESSV 446
>pdb|3QNK|A Chain A, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|B Chain B, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|C Chain C, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
pdb|3QNK|D Chain D, Crystal Structure Of A Hypothetical Susd-Like Protein
(Bf3747) From Bacteroides Fragilis Nctc 9343 At 2.70 A
Resolution
Length = 517
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 602 NLRKIAELMPGASGAEVKGVCTEAGMYALRER 633
+L+K E +P + G+ KG T+ YAL+ R
Sbjct: 159 DLKKATEXLPASYGSREKGRATKGAAYALKSR 190
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432
+PD +++ + +++ + EV L AL +P LLYG GTGKT +AR
Sbjct: 13 LPDYVPDVLPHREAELRRLAEV---------LAPALRGEKPSNALLYGLTGTGKTAVARL 63
Query: 433 VAHHTEC 439
V E
Sbjct: 64 VLRRLEA 70
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 416 VLLYGPPGTGKTLLARAVA 434
+L YGPPGTGKT A+A
Sbjct: 49 LLFYGPPGTGKTSTIVALA 67
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 412 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 452
+P G L+ GP G GKT LA+ +A TE IR+ +E ++K
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 86
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGK 426
+ VEK T + V G D I+ +K +E + H +L GPPGTGK
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGK 51
Query: 427 TLLARAVAH 435
T A A+A
Sbjct: 52 TATAIALAR 60
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 412 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 452
+P G L+ GP G GKT LA+ +A TE IR+ +E +K
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEK 89
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGK 426
+ VEK T + V G D I+ +K +E + H +L GPPGTGK
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGK 51
Query: 427 TLLARAVAH 435
T A A+A
Sbjct: 52 TATAIALAR 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,798,842
Number of Sequences: 62578
Number of extensions: 633760
Number of successful extensions: 1914
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 170
length of query: 665
length of database: 14,973,337
effective HSP length: 105
effective length of query: 560
effective length of database: 8,402,647
effective search space: 4705482320
effective search space used: 4705482320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)