Query psy15936
Match_columns 665
No_of_seqs 531 out of 3881
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 3.5E-79 7.6E-84 625.1 39.7 363 140-654 35-397 (406)
2 KOG0728|consensus 100.0 2.1E-72 4.5E-77 547.7 31.5 391 123-665 14-404 (404)
3 KOG0727|consensus 100.0 1.4E-63 3E-68 486.4 27.9 370 132-653 31-400 (408)
4 KOG0652|consensus 100.0 1.7E-60 3.8E-65 466.5 26.1 371 132-654 26-417 (424)
5 KOG0726|consensus 100.0 2.9E-60 6.2E-65 471.3 20.4 346 156-653 85-430 (440)
6 PTZ00454 26S protease regulato 100.0 7.1E-56 1.5E-60 480.7 40.2 373 129-653 18-390 (398)
7 PTZ00361 26 proteosome regulat 100.0 5.3E-54 1.1E-58 468.7 38.8 367 134-652 59-427 (438)
8 KOG0729|consensus 100.0 1.3E-53 2.7E-58 419.4 24.8 333 170-654 87-423 (435)
9 KOG0730|consensus 100.0 1.6E-52 3.4E-57 456.9 24.2 357 271-664 185-689 (693)
10 KOG0733|consensus 100.0 2.7E-52 5.9E-57 448.2 25.5 355 269-661 189-781 (802)
11 PRK03992 proteasome-activating 100.0 3.9E-50 8.5E-55 437.5 40.5 374 131-656 6-379 (389)
12 TIGR01242 26Sp45 26S proteasom 100.0 9.9E-48 2.2E-52 416.5 40.5 361 137-649 3-363 (364)
13 KOG0651|consensus 100.0 2.6E-49 5.7E-54 397.2 18.3 359 140-651 17-375 (388)
14 TIGR03689 pup_AAA proteasome A 100.0 6E-42 1.3E-46 378.6 40.9 418 137-651 5-480 (512)
15 TIGR01243 CDC48 AAA family ATP 100.0 5.5E-43 1.2E-47 410.6 32.0 262 373-665 447-726 (733)
16 KOG0734|consensus 100.0 9.9E-41 2.1E-45 354.2 20.7 250 374-656 299-548 (752)
17 KOG0738|consensus 100.0 2.2E-40 4.7E-45 341.4 21.5 267 368-664 201-484 (491)
18 KOG0736|consensus 100.0 6.4E-40 1.4E-44 360.8 25.0 261 372-663 665-946 (953)
19 KOG0733|consensus 100.0 2.3E-38 4.9E-43 341.1 21.0 229 375-632 186-414 (802)
20 KOG0731|consensus 100.0 5.6E-38 1.2E-42 353.0 24.2 248 375-652 307-556 (774)
21 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-41 2.7E-46 349.1 -5.4 239 272-556 153-398 (406)
22 COG0465 HflB ATP-dependent Zn 100.0 1.2E-36 2.6E-41 337.4 21.5 254 374-657 145-398 (596)
23 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-35 4.9E-40 290.1 18.7 244 372-652 114-358 (368)
24 KOG0735|consensus 100.0 5E-35 1.1E-39 319.5 22.9 225 376-632 664-888 (952)
25 COG0464 SpoVK ATPases of the A 100.0 1.7E-34 3.6E-39 325.4 24.5 251 372-654 235-488 (494)
26 KOG0739|consensus 100.0 9.1E-35 2E-39 290.4 15.5 261 370-664 124-431 (439)
27 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-33 3E-38 317.5 25.6 251 372-652 48-298 (495)
28 KOG0737|consensus 100.0 1.4E-33 3E-38 291.6 19.8 246 375-652 88-362 (386)
29 CHL00176 ftsH cell division pr 100.0 7.9E-33 1.7E-37 315.6 24.8 248 375-652 179-426 (638)
30 CHL00195 ycf46 Ycf46; Provisio 100.0 2.1E-32 4.5E-37 303.4 26.1 254 374-664 223-480 (489)
31 KOG0727|consensus 100.0 1.1E-34 2.3E-39 284.0 2.7 351 132-554 38-400 (408)
32 KOG0728|consensus 100.0 1.3E-34 2.8E-39 283.1 2.4 333 141-554 39-392 (404)
33 PRK10733 hflB ATP-dependent me 100.0 8.4E-31 1.8E-35 301.9 26.0 247 376-652 149-395 (644)
34 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.8E-30 8.2E-35 306.9 22.8 223 398-655 1615-1883(2281)
35 KOG0726|consensus 100.0 1.1E-33 2.5E-38 281.8 -8.3 237 272-554 187-430 (440)
36 KOG0730|consensus 100.0 1.7E-29 3.7E-34 276.8 20.1 242 374-655 180-422 (693)
37 KOG0729|consensus 100.0 2.3E-33 5.1E-38 276.4 -9.2 231 275-551 182-419 (435)
38 KOG0741|consensus 100.0 2E-29 4.3E-34 268.2 14.9 250 375-654 215-495 (744)
39 KOG0732|consensus 100.0 3.3E-29 7.2E-34 288.7 17.3 250 374-655 260-531 (1080)
40 KOG0740|consensus 100.0 3.2E-29 6.9E-34 268.2 15.9 262 370-664 144-419 (428)
41 KOG0652|consensus 100.0 7.9E-32 1.7E-36 265.0 -4.1 229 275-549 176-411 (424)
42 TIGR01243 CDC48 AAA family ATP 100.0 4E-28 8.7E-33 285.1 25.8 249 373-653 172-439 (733)
43 PLN00020 ribulose bisphosphate 99.9 5.6E-25 1.2E-29 230.2 19.7 199 408-628 143-350 (413)
44 KOG0734|consensus 99.9 5.3E-26 1.1E-30 242.4 0.4 244 265-558 299-549 (752)
45 KOG0738|consensus 99.9 1.1E-23 2.5E-28 218.0 -2.1 228 264-538 206-440 (491)
46 KOG0651|consensus 99.9 1.7E-24 3.8E-29 218.5 -8.1 232 272-549 134-372 (388)
47 KOG0731|consensus 99.9 3.8E-23 8.2E-28 233.6 0.5 243 264-554 305-557 (774)
48 COG0465 HflB ATP-dependent Zn 99.8 2.7E-22 6E-27 223.3 1.4 248 264-558 144-398 (596)
49 TIGR03689 pup_AAA proteasome A 99.8 9.8E-21 2.1E-25 210.2 8.7 296 132-469 7-378 (512)
50 KOG0743|consensus 99.8 9.6E-19 2.1E-23 186.5 16.3 209 376-621 198-412 (457)
51 PTZ00454 26S protease regulato 99.8 4.6E-20 9.9E-25 201.0 2.5 343 132-553 28-389 (398)
52 CHL00181 cbbX CbbX; Provisiona 99.8 2.8E-17 6E-22 172.3 21.1 215 376-632 20-257 (287)
53 KOG0742|consensus 99.8 7E-18 1.5E-22 175.8 15.3 202 411-648 382-611 (630)
54 PTZ00361 26 proteosome regulat 99.7 3.9E-19 8.5E-24 194.9 3.5 234 272-552 185-426 (438)
55 TIGR02880 cbbX_cfxQ probable R 99.7 7E-17 1.5E-21 169.2 20.3 212 379-632 22-256 (284)
56 KOG0735|consensus 99.7 3.6E-17 7.7E-22 180.4 18.6 214 410-652 428-651 (952)
57 KOG0739|consensus 99.7 7.1E-20 1.5E-24 184.0 -3.0 220 264-533 127-353 (439)
58 TIGR02881 spore_V_K stage V sp 99.7 1.1E-16 2.4E-21 166.0 20.6 212 378-632 5-241 (261)
59 PF00004 AAA: ATPase family as 99.7 3.8E-17 8.2E-22 150.3 13.4 131 416-578 1-132 (132)
60 PF05496 RuvB_N: Holliday junc 99.7 5.4E-17 1.2E-21 160.6 13.5 210 371-626 16-226 (233)
61 KOG0736|consensus 99.7 1.3E-16 2.8E-21 177.6 17.7 212 410-655 428-659 (953)
62 PRK03992 proteasome-activating 99.7 1E-17 2.2E-22 183.0 6.5 345 132-555 14-377 (389)
63 KOG0744|consensus 99.7 1.5E-16 3.4E-21 161.9 12.5 239 377-652 140-417 (423)
64 PRK00080 ruvB Holliday junctio 99.7 2.4E-15 5.2E-20 161.2 20.0 233 371-649 17-250 (328)
65 COG0466 Lon ATP-dependent Lon 99.7 1.4E-16 3.1E-21 177.2 9.6 232 379-647 323-582 (782)
66 TIGR00635 ruvB Holliday juncti 99.7 4.7E-15 1E-19 157.1 19.2 227 377-649 2-229 (305)
67 COG2255 RuvB Holliday junction 99.6 4E-15 8.6E-20 149.9 17.4 232 372-650 19-252 (332)
68 COG0464 SpoVK ATPases of the A 99.6 9.3E-15 2E-19 165.2 21.5 222 397-652 2-229 (494)
69 KOG2004|consensus 99.6 7.1E-16 1.5E-20 170.6 8.4 178 378-592 410-596 (906)
70 KOG0737|consensus 99.6 5.9E-17 1.3E-21 168.6 -2.1 220 268-536 90-317 (386)
71 TIGR00763 lon ATP-dependent pr 99.6 1.4E-14 3E-19 171.4 17.1 231 379-646 320-583 (775)
72 TIGR02902 spore_lonB ATP-depen 99.6 2.2E-14 4.8E-19 162.6 17.7 237 369-648 55-331 (531)
73 TIGR01242 26Sp45 26S proteasom 99.6 1.6E-15 3.5E-20 164.8 7.3 339 132-550 5-363 (364)
74 TIGR02639 ClpA ATP-dependent C 99.6 3.5E-14 7.5E-19 167.2 18.6 225 372-650 175-430 (731)
75 COG2256 MGS1 ATPase related to 99.6 7.1E-14 1.5E-18 147.2 17.4 208 371-652 16-241 (436)
76 PRK11034 clpA ATP-dependent Cl 99.5 1.6E-13 3.4E-18 160.2 18.4 222 375-650 182-434 (758)
77 PRK14956 DNA polymerase III su 99.5 1.9E-13 4.1E-18 150.3 17.6 204 370-644 9-241 (484)
78 PRK07003 DNA polymerase III su 99.5 3.2E-13 6.8E-18 153.7 19.4 220 370-656 7-263 (830)
79 KOG0732|consensus 99.5 3E-15 6.5E-20 174.1 2.5 253 265-565 260-540 (1080)
80 PRK12323 DNA polymerase III su 99.5 1.8E-13 4E-18 153.9 16.2 191 370-627 7-231 (700)
81 PRK04195 replication factor C 99.5 4E-13 8.7E-18 151.2 19.0 212 367-645 2-221 (482)
82 PRK14962 DNA polymerase III su 99.5 3.5E-13 7.6E-18 150.1 17.8 206 371-647 6-240 (472)
83 PRK14960 DNA polymerase III su 99.5 3.8E-13 8.3E-18 151.7 17.6 203 371-644 7-238 (702)
84 PRK14961 DNA polymerase III su 99.5 8.9E-13 1.9E-17 143.2 19.5 207 370-647 7-242 (363)
85 TIGR02928 orc1/cdc6 family rep 99.5 2.6E-12 5.7E-17 139.5 22.7 218 379-650 15-275 (365)
86 PRK13342 recombination factor 99.5 8.6E-13 1.9E-17 145.8 18.8 203 371-650 4-220 (413)
87 PRK14949 DNA polymerase III su 99.5 1.1E-12 2.3E-17 152.1 19.2 196 370-626 7-225 (944)
88 PLN03025 replication factor C 99.5 2E-12 4.3E-17 138.1 19.9 187 369-623 3-202 (319)
89 PRK00149 dnaA chromosomal repl 99.5 1.3E-12 2.8E-17 146.0 18.9 191 413-650 148-350 (450)
90 TIGR00362 DnaA chromosomal rep 99.5 2.6E-12 5.7E-17 141.7 20.8 192 413-651 136-339 (405)
91 PRK07994 DNA polymerase III su 99.5 1.7E-12 3.7E-17 148.2 19.4 190 371-627 8-226 (647)
92 PRK14958 DNA polymerase III su 99.5 6.2E-13 1.3E-17 149.6 15.6 205 370-645 7-240 (509)
93 PRK12402 replication factor C 99.5 2.9E-12 6.2E-17 137.5 20.2 213 368-647 4-247 (337)
94 PRK06645 DNA polymerase III su 99.4 1.7E-12 3.7E-17 145.3 17.4 215 370-646 12-253 (507)
95 COG0542 clpA ATP-binding subun 99.4 4E-13 8.7E-18 154.0 12.0 224 377-628 489-753 (786)
96 KOG0989|consensus 99.4 1.9E-12 4.1E-17 132.1 15.3 220 369-653 26-270 (346)
97 PRK00411 cdc6 cell division co 99.4 9.7E-12 2.1E-16 136.5 22.4 222 379-651 30-284 (394)
98 PRK14086 dnaA chromosomal repl 99.4 3.2E-12 7E-17 144.2 18.4 192 414-652 315-518 (617)
99 PRK10787 DNA-binding ATP-depen 99.4 2E-12 4.3E-17 152.1 16.7 231 379-647 322-580 (784)
100 PRK14964 DNA polymerase III su 99.4 4.3E-12 9.3E-17 141.1 18.2 203 372-645 6-237 (491)
101 TIGR03345 VI_ClpV1 type VI sec 99.4 5.9E-12 1.3E-16 149.7 20.3 220 372-646 180-428 (852)
102 PRK08691 DNA polymerase III su 99.4 2.8E-12 6.1E-17 146.0 16.8 206 370-646 7-241 (709)
103 PRK14951 DNA polymerase III su 99.4 5.9E-12 1.3E-16 143.6 19.0 204 370-644 7-244 (618)
104 PRK14088 dnaA chromosomal repl 99.4 6.9E-12 1.5E-16 139.2 19.0 192 413-651 130-334 (440)
105 PRK14963 DNA polymerase III su 99.4 6.8E-12 1.5E-16 141.0 18.3 203 371-645 6-236 (504)
106 PRK14957 DNA polymerase III su 99.4 8.1E-12 1.8E-16 140.7 18.5 204 371-645 8-240 (546)
107 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.3E-11 2.7E-16 124.9 18.2 195 383-646 21-225 (226)
108 PTZ00112 origin recognition co 99.4 1.6E-11 3.6E-16 140.3 19.3 218 379-651 755-1008(1164)
109 PRK12422 chromosomal replicati 99.4 1.4E-11 3.1E-16 136.5 18.5 193 413-651 141-345 (445)
110 PRK06893 DNA replication initi 99.4 1E-11 2.2E-16 126.3 15.8 180 414-646 40-227 (229)
111 PRK14969 DNA polymerase III su 99.4 5.8E-12 1.3E-16 142.6 15.2 205 371-646 8-241 (527)
112 CHL00176 ftsH cell division pr 99.4 5.6E-14 1.2E-18 161.3 -1.1 239 267-553 180-426 (638)
113 PRK00440 rfc replication facto 99.4 1.7E-11 3.8E-16 130.3 18.0 208 367-647 5-224 (319)
114 PRK05563 DNA polymerase III su 99.4 2.3E-11 4.9E-16 138.8 19.9 203 371-644 8-239 (559)
115 PHA02544 44 clamp loader, smal 99.4 1.8E-11 4E-16 130.3 18.0 162 369-592 11-173 (316)
116 PRK08084 DNA replication initi 99.4 3.6E-11 7.7E-16 122.8 19.2 178 413-646 45-233 (235)
117 KOG0740|consensus 99.4 3.6E-14 7.8E-19 152.8 -3.1 221 267-536 150-377 (428)
118 TIGR01241 FtsH_fam ATP-depende 99.4 1.2E-13 2.6E-18 156.1 0.6 234 271-551 56-296 (495)
119 PRK13341 recombination factor 99.4 1.5E-11 3.2E-16 143.2 17.5 208 370-649 19-247 (725)
120 TIGR02397 dnaX_nterm DNA polym 99.4 2.9E-11 6.3E-16 130.8 18.8 206 370-646 5-239 (355)
121 TIGR02639 ClpA ATP-dependent C 99.3 1.8E-11 3.9E-16 144.4 18.3 209 378-630 453-712 (731)
122 PRK10865 protein disaggregatio 99.3 1.1E-11 2.4E-16 147.8 16.6 169 373-596 172-358 (857)
123 PRK08727 hypothetical protein; 99.3 5.2E-11 1.1E-15 121.5 19.2 180 413-648 41-230 (233)
124 PRK11034 clpA ATP-dependent Cl 99.3 1.9E-11 4.1E-16 142.9 17.8 208 379-630 458-716 (758)
125 PRK14087 dnaA chromosomal repl 99.3 2.8E-11 6.1E-16 134.6 18.2 191 413-650 141-349 (450)
126 PRK14970 DNA polymerase III su 99.3 2.1E-11 4.5E-16 132.8 16.8 213 369-646 7-230 (367)
127 TIGR03346 chaperone_ClpB ATP-d 99.3 2.1E-11 4.5E-16 145.9 18.1 203 372-629 166-396 (852)
128 PRK07133 DNA polymerase III su 99.3 4.6E-11 1E-15 137.4 19.6 211 369-644 8-238 (725)
129 PRK14952 DNA polymerase III su 99.3 4.7E-11 1E-15 135.7 19.5 204 371-644 5-239 (584)
130 PRK05896 DNA polymerase III su 99.3 2E-11 4.3E-16 137.8 16.2 205 369-644 6-239 (605)
131 PRK14959 DNA polymerase III su 99.3 2.5E-11 5.3E-16 137.7 17.0 205 370-645 7-240 (624)
132 PRK08903 DnaA regulatory inact 99.3 6.4E-11 1.4E-15 120.2 18.4 176 411-647 40-224 (227)
133 KOG2028|consensus 99.3 3.7E-11 8.1E-16 124.6 16.1 209 371-649 130-368 (554)
134 PRK07940 DNA polymerase III su 99.3 1.8E-11 3.9E-16 133.5 14.7 189 377-620 3-213 (394)
135 CHL00095 clpC Clp protease ATP 99.3 3.7E-11 7.9E-16 143.4 18.4 202 373-629 173-401 (821)
136 TIGR02640 gas_vesic_GvpN gas v 99.3 4.5E-11 9.7E-16 124.1 16.8 200 412-651 20-259 (262)
137 PRK07764 DNA polymerase III su 99.3 4.5E-11 9.8E-16 140.8 18.0 189 371-626 7-226 (824)
138 PRK14953 DNA polymerase III su 99.3 6.5E-11 1.4E-15 132.6 17.7 212 369-645 6-240 (486)
139 PRK14965 DNA polymerase III su 99.3 5.4E-11 1.2E-15 136.3 16.8 203 371-644 8-239 (576)
140 PRK05342 clpX ATP-dependent pr 99.3 5E-11 1.1E-15 130.7 15.7 251 380-632 72-381 (412)
141 PRK10733 hflB ATP-dependent me 99.3 8.7E-13 1.9E-17 152.9 1.7 240 265-552 147-394 (644)
142 PRK08451 DNA polymerase III su 99.3 1.1E-10 2.4E-15 131.0 18.0 202 371-643 6-236 (535)
143 PRK06305 DNA polymerase III su 99.3 2E-10 4.3E-15 127.9 19.8 204 371-645 9-242 (451)
144 KOG1969|consensus 99.3 1.7E-10 3.7E-15 128.9 18.7 232 369-634 261-520 (877)
145 COG0593 DnaA ATPase involved i 99.3 2.5E-10 5.4E-15 123.4 19.2 202 412-663 112-325 (408)
146 CHL00206 ycf2 Ycf2; Provisiona 99.3 2E-13 4.3E-18 165.3 -5.2 215 295-554 1621-1881(2281)
147 PRK09111 DNA polymerase III su 99.3 2.8E-10 6.1E-15 130.1 20.6 212 370-646 15-254 (598)
148 PRK14955 DNA polymerase III su 99.2 7.6E-11 1.6E-15 129.6 14.5 215 371-646 8-254 (397)
149 TIGR02903 spore_lon_C ATP-depe 99.2 5.1E-10 1.1E-14 129.1 21.8 245 372-650 147-431 (615)
150 PRK06647 DNA polymerase III su 99.2 2.6E-10 5.7E-15 129.7 18.8 204 371-645 8-240 (563)
151 TIGR00382 clpX endopeptidase C 99.2 2.3E-10 5.1E-15 124.9 17.6 248 380-632 78-387 (413)
152 PRK14954 DNA polymerase III su 99.2 3.9E-10 8.4E-15 129.2 19.9 215 371-646 8-254 (620)
153 PRK06620 hypothetical protein; 99.2 1.8E-10 3.8E-15 116.0 15.0 164 414-646 45-213 (214)
154 KOG0741|consensus 99.2 4.5E-11 9.8E-16 129.0 11.2 140 415-589 540-683 (744)
155 TIGR00390 hslU ATP-dependent p 99.2 2E-10 4.3E-15 124.0 15.9 76 380-455 13-90 (441)
156 TIGR03345 VI_ClpV1 type VI sec 99.2 3.9E-10 8.5E-15 134.3 19.4 206 378-630 565-831 (852)
157 COG1474 CDC6 Cdc6-related prot 99.2 1.1E-09 2.3E-14 118.6 20.8 217 381-652 19-268 (366)
158 PRK05642 DNA replication initi 99.2 5.2E-10 1.1E-14 114.2 17.1 179 413-646 45-232 (234)
159 TIGR03346 chaperone_ClpB ATP-d 99.2 4E-10 8.7E-15 134.9 18.5 211 377-631 563-827 (852)
160 CHL00195 ycf46 Ycf46; Provisio 99.2 4.1E-12 8.8E-17 141.8 1.1 227 269-549 227-462 (489)
161 TIGR02030 BchI-ChlI magnesium 99.2 3.6E-10 7.9E-15 120.8 15.9 228 378-652 3-312 (337)
162 PRK14948 DNA polymerase III su 99.2 7.9E-10 1.7E-14 127.2 19.7 195 370-625 7-226 (620)
163 TIGR01650 PD_CobS cobaltochela 99.2 6.7E-11 1.4E-15 124.6 9.9 184 411-628 62-283 (327)
164 PRK13407 bchI magnesium chelat 99.2 4.9E-10 1.1E-14 119.5 16.5 228 375-651 4-308 (334)
165 PRK05201 hslU ATP-dependent pr 99.2 5.4E-10 1.2E-14 120.7 16.7 89 380-468 16-107 (443)
166 COG2812 DnaX DNA polymerase II 99.2 3.2E-10 7E-15 125.9 15.4 228 372-660 9-267 (515)
167 PRK10865 protein disaggregatio 99.2 8.6E-10 1.9E-14 131.7 19.6 209 376-630 565-829 (857)
168 PRK14950 DNA polymerase III su 99.2 8.8E-10 1.9E-14 126.8 18.7 210 370-644 7-240 (585)
169 PF00308 Bac_DnaA: Bacterial d 99.2 5.1E-10 1.1E-14 113.1 14.7 171 413-629 34-216 (219)
170 PRK14971 DNA polymerase III su 99.2 1.8E-09 4E-14 124.2 20.7 194 368-628 6-229 (614)
171 PRK13531 regulatory ATPase Rav 99.1 2.5E-09 5.5E-14 117.7 20.7 223 380-655 21-289 (498)
172 CHL00095 clpC Clp protease ATP 99.1 8.2E-10 1.8E-14 131.9 18.1 228 378-630 508-782 (821)
173 CHL00081 chlI Mg-protoporyphyr 99.1 1.1E-09 2.4E-14 117.2 16.9 231 375-653 13-326 (350)
174 PF05673 DUF815: Protein of un 99.1 6.8E-10 1.5E-14 111.8 14.0 194 370-623 18-243 (249)
175 COG1223 Predicted ATPase (AAA+ 99.1 1.4E-11 3.1E-16 122.6 -0.0 227 268-549 119-354 (368)
176 cd00009 AAA The AAA+ (ATPases 99.1 1.1E-09 2.4E-14 101.1 12.3 125 412-577 18-150 (151)
177 PRK09087 hypothetical protein; 99.1 2.4E-09 5.1E-14 108.7 14.7 173 413-649 44-222 (226)
178 COG1224 TIP49 DNA helicase TIP 99.1 6.9E-09 1.5E-13 108.0 17.7 100 549-651 322-434 (450)
179 TIGR02442 Cob-chelat-sub cobal 99.0 3.2E-09 6.9E-14 123.3 16.4 225 378-652 3-307 (633)
180 PHA02244 ATPase-like protein 99.0 9E-09 1.9E-13 109.8 17.2 139 411-588 117-269 (383)
181 smart00350 MCM minichromosome 99.0 1.7E-08 3.6E-13 114.5 20.1 234 380-651 204-506 (509)
182 COG0714 MoxR-like ATPases [Gen 99.0 1.3E-08 2.8E-13 109.3 18.0 219 381-651 26-298 (329)
183 TIGR03015 pepcterm_ATPase puta 99.0 2.6E-08 5.6E-13 103.4 19.7 84 564-650 179-267 (269)
184 PRK09112 DNA polymerase III su 99.0 1.8E-08 3.8E-13 108.7 16.8 189 373-623 17-242 (351)
185 PRK07471 DNA polymerase III su 98.9 4.5E-08 9.8E-13 106.1 19.3 185 374-622 14-239 (365)
186 TIGR00764 lon_rel lon-related 98.9 2.7E-08 5.8E-13 114.7 17.9 101 549-651 270-393 (608)
187 KOG0991|consensus 98.9 1E-08 2.3E-13 101.0 11.4 180 369-612 17-206 (333)
188 TIGR00368 Mg chelatase-related 98.9 4.6E-08 1E-12 109.9 18.2 219 377-647 190-497 (499)
189 PRK05564 DNA polymerase III su 98.9 5.5E-08 1.2E-12 103.7 17.3 170 377-613 2-183 (313)
190 TIGR02031 BchD-ChlD magnesium 98.9 5E-08 1.1E-12 112.2 17.0 204 414-652 17-261 (589)
191 PRK04132 replication factor C 98.8 5.1E-08 1.1E-12 114.7 16.1 156 416-626 567-736 (846)
192 PF07728 AAA_5: AAA domain (dy 98.8 4.5E-09 9.8E-14 98.1 5.7 127 415-570 1-139 (139)
193 COG0470 HolB ATPase involved i 98.8 4.9E-08 1.1E-12 104.0 14.3 148 381-589 3-178 (325)
194 TIGR00678 holB DNA polymerase 98.8 3.7E-08 8E-13 97.0 12.3 143 412-612 13-183 (188)
195 TIGR00602 rad24 checkpoint pro 98.8 1E-07 2.2E-12 109.4 17.3 225 368-647 73-353 (637)
196 COG2607 Predicted ATPase (AAA+ 98.8 1.3E-07 2.8E-12 94.0 15.3 197 370-624 51-276 (287)
197 PF05621 TniB: Bacterial TniB 98.8 2.5E-07 5.5E-12 96.2 17.2 222 370-644 28-284 (302)
198 smart00382 AAA ATPases associa 98.8 5.3E-08 1.2E-12 88.8 10.8 74 413-486 2-92 (148)
199 COG0542 clpA ATP-binding subun 98.7 2E-07 4.3E-12 107.8 17.0 202 375-630 166-394 (786)
200 PRK07399 DNA polymerase III su 98.7 1E-07 2.2E-12 101.4 13.3 183 377-623 2-223 (314)
201 PRK09862 putative ATP-dependen 98.7 5.1E-07 1.1E-11 101.3 18.1 39 610-648 453-491 (506)
202 PF07724 AAA_2: AAA domain (Cd 98.7 4.8E-08 1E-12 94.8 8.0 74 412-487 2-83 (171)
203 PRK05707 DNA polymerase III su 98.7 2.1E-07 4.5E-12 99.6 13.4 148 411-612 20-195 (328)
204 TIGR01817 nifA Nif-specific re 98.6 3.7E-07 8.1E-12 104.4 15.6 214 375-643 192-439 (534)
205 COG1220 HslU ATP-dependent pro 98.6 9.6E-07 2.1E-11 91.7 16.5 68 380-447 16-84 (444)
206 PRK11331 5-methylcytosine-spec 98.6 2.5E-07 5.4E-12 101.4 13.0 140 412-578 193-357 (459)
207 PF07726 AAA_3: ATPase family 98.6 6.6E-08 1.4E-12 88.1 6.9 82 415-509 1-88 (131)
208 PRK11608 pspF phage shock prot 98.6 4.6E-07 1E-11 97.1 14.4 199 378-628 5-239 (326)
209 PRK15424 propionate catabolism 98.6 2.7E-07 5.9E-12 104.5 13.0 109 376-509 216-348 (538)
210 KOG2035|consensus 98.6 8.7E-07 1.9E-11 89.8 14.9 183 369-612 3-220 (351)
211 TIGR02329 propionate_PrpR prop 98.6 2.6E-07 5.7E-12 104.6 12.3 217 376-644 209-465 (526)
212 TIGR02974 phageshock_pspF psp 98.6 4.6E-07 1E-11 97.2 13.6 196 382-629 2-233 (329)
213 KOG1942|consensus 98.6 1.2E-06 2.6E-11 89.2 15.6 102 549-653 327-442 (456)
214 COG3829 RocR Transcriptional r 98.6 7.4E-08 1.6E-12 106.0 7.4 214 374-643 240-491 (560)
215 KOG1514|consensus 98.6 1.8E-06 3.8E-11 97.3 18.2 198 414-654 423-660 (767)
216 KOG1051|consensus 98.6 5.4E-07 1.2E-11 105.5 14.8 111 379-510 562-687 (898)
217 PRK10820 DNA-binding transcrip 98.6 7.5E-07 1.6E-11 101.4 15.6 213 374-642 199-447 (520)
218 PTZ00111 DNA replication licen 98.6 1.1E-06 2.5E-11 103.1 17.1 40 613-652 768-807 (915)
219 PF06068 TIP49: TIP49 C-termin 98.6 5.2E-07 1.1E-11 95.7 12.8 64 379-450 24-89 (398)
220 PRK05022 anaerobic nitric oxid 98.6 9.1E-07 2E-11 100.6 15.8 201 377-630 185-421 (509)
221 PRK08058 DNA polymerase III su 98.6 7.2E-07 1.6E-11 95.8 13.8 148 378-590 4-180 (329)
222 PRK11388 DNA-binding transcrip 98.5 1.5E-06 3.3E-11 101.5 16.3 215 376-646 322-568 (638)
223 COG1221 PspF Transcriptional r 98.5 3.9E-07 8.4E-12 98.6 9.2 206 373-630 72-310 (403)
224 PF01078 Mg_chelatase: Magnesi 98.5 1.2E-07 2.5E-12 93.8 4.7 45 378-437 2-46 (206)
225 PLN00020 ribulose bisphosphate 98.5 1.6E-08 3.5E-13 107.2 -1.5 154 297-470 141-312 (413)
226 COG2204 AtoC Response regulato 98.5 2E-06 4.4E-11 94.7 14.8 210 377-642 139-384 (464)
227 PRK08116 hypothetical protein; 98.5 1.3E-06 2.8E-11 91.1 12.3 70 412-483 113-189 (268)
228 COG1241 MCM2 Predicted ATPase 98.4 1.7E-06 3.7E-11 99.3 13.6 228 380-653 287-596 (682)
229 COG1219 ClpX ATP-dependent pro 98.4 7E-07 1.5E-11 92.1 8.9 96 414-509 98-202 (408)
230 PF00158 Sigma54_activat: Sigm 98.4 3.1E-06 6.7E-11 82.0 12.8 103 382-509 2-119 (168)
231 KOG2680|consensus 98.4 6.9E-06 1.5E-10 84.1 15.6 103 549-654 319-434 (454)
232 COG3604 FhlA Transcriptional r 98.4 1.6E-06 3.4E-11 94.6 11.2 200 377-629 221-456 (550)
233 KOG0478|consensus 98.4 2.3E-06 4.9E-11 95.9 12.4 236 380-651 430-726 (804)
234 COG1239 ChlI Mg-chelatase subu 98.4 6.4E-06 1.4E-10 88.7 15.3 220 377-651 15-324 (423)
235 KOG2227|consensus 98.4 9.2E-06 2E-10 87.9 16.4 223 379-652 150-418 (529)
236 PF13177 DNA_pol3_delta2: DNA 98.4 1.5E-06 3.2E-11 83.7 9.2 134 383-579 1-161 (162)
237 PRK06871 DNA polymerase III su 98.4 8.4E-06 1.8E-10 86.9 15.7 132 412-591 23-178 (325)
238 PRK15429 formate hydrogenlyase 98.4 7.1E-06 1.5E-10 96.7 16.7 109 376-509 373-496 (686)
239 PF03215 Rad17: Rad17 cell cyc 98.3 1.1E-05 2.4E-10 91.1 16.3 68 368-443 8-75 (519)
240 PRK13406 bchD magnesium chelat 98.3 7.5E-06 1.6E-10 93.8 14.9 201 414-652 26-253 (584)
241 PF00493 MCM: MCM2/3/5 family 98.3 1.9E-06 4.1E-11 92.6 9.4 197 413-651 57-328 (331)
242 PRK13765 ATP-dependent proteas 98.3 2.5E-05 5.3E-10 90.3 19.0 98 549-648 279-399 (637)
243 KOG0745|consensus 98.3 1.4E-06 3E-11 93.1 7.9 97 413-509 226-331 (564)
244 smart00763 AAA_PrkA PrkA AAA d 98.3 1.4E-05 3.1E-10 85.5 15.5 59 380-446 52-118 (361)
245 PRK08181 transposase; Validate 98.3 2.9E-06 6.3E-11 88.2 9.7 88 412-510 105-196 (269)
246 PRK12377 putative replication 98.3 1.2E-05 2.7E-10 82.5 13.7 86 413-509 101-191 (248)
247 PF13173 AAA_14: AAA domain 98.3 1E-05 2.2E-10 74.6 11.8 70 413-484 2-73 (128)
248 PRK06835 DNA replication prote 98.3 6.8E-06 1.5E-10 87.9 12.0 87 412-509 182-274 (329)
249 COG0606 Predicted ATPase with 98.3 2.1E-06 4.5E-11 93.6 8.1 47 376-437 176-222 (490)
250 PRK06964 DNA polymerase III su 98.2 4.5E-06 9.7E-11 89.6 10.1 133 411-591 19-203 (342)
251 PRK08769 DNA polymerase III su 98.2 1.6E-05 3.5E-10 84.6 14.1 151 411-614 24-202 (319)
252 PF01637 Arch_ATPase: Archaeal 98.2 5.2E-06 1.1E-10 83.4 9.6 184 383-620 3-233 (234)
253 KOG0480|consensus 98.2 1.3E-05 2.7E-10 89.5 13.1 240 376-653 342-647 (764)
254 PRK06526 transposase; Provisio 98.2 4.6E-06 1E-10 86.1 8.9 88 412-510 97-188 (254)
255 PRK09183 transposase/IS protei 98.2 7.6E-06 1.7E-10 84.9 10.2 90 411-510 100-193 (259)
256 PRK07993 DNA polymerase III su 98.2 1.8E-05 4E-10 85.0 13.2 148 411-613 22-197 (334)
257 PRK06090 DNA polymerase III su 98.2 6.5E-05 1.4E-09 80.0 17.1 129 411-590 23-178 (319)
258 PRK10923 glnG nitrogen regulat 98.2 1.9E-05 4E-10 89.0 13.7 213 379-646 138-385 (469)
259 PRK06921 hypothetical protein; 98.1 2.6E-05 5.5E-10 81.3 12.7 68 412-482 116-187 (266)
260 TIGR02915 PEP_resp_reg putativ 98.1 3.5E-05 7.7E-10 86.1 14.7 204 380-642 140-382 (445)
261 PRK07952 DNA replication prote 98.1 1.3E-05 2.8E-10 82.2 10.3 69 414-484 100-174 (244)
262 PRK08699 DNA polymerase III su 98.1 8.7E-06 1.9E-10 87.1 8.7 132 411-590 19-183 (325)
263 PF01695 IstB_IS21: IstB-like 98.1 7.8E-06 1.7E-10 80.0 6.7 71 411-483 45-119 (178)
264 PF14532 Sigma54_activ_2: Sigm 98.0 8.9E-06 1.9E-10 76.0 6.2 92 383-510 2-96 (138)
265 PRK15115 response regulator Gl 98.0 6.3E-05 1.4E-09 84.1 14.1 187 412-646 156-381 (444)
266 COG1484 DnaC DNA replication p 98.0 3.5E-05 7.5E-10 79.7 10.9 71 412-484 104-179 (254)
267 PRK11361 acetoacetate metaboli 98.0 9.7E-05 2.1E-09 82.8 15.3 190 412-646 165-390 (457)
268 PRK08939 primosomal protein Dn 98.0 4.5E-05 9.8E-10 80.9 11.5 70 412-483 155-228 (306)
269 KOG0990|consensus 98.0 7.2E-05 1.6E-09 77.7 11.9 168 366-597 28-208 (360)
270 PLN03210 Resistant to P. syrin 97.9 0.00014 3E-09 90.8 16.7 56 373-439 178-233 (1153)
271 TIGR01818 ntrC nitrogen regula 97.9 8.1E-05 1.8E-09 83.6 13.3 212 380-646 135-381 (463)
272 PF00931 NB-ARC: NB-ARC domain 97.9 0.00074 1.6E-08 70.6 18.3 175 385-622 2-203 (287)
273 PF05729 NACHT: NACHT domain 97.9 0.00016 3.4E-09 68.7 11.8 23 415-437 2-24 (166)
274 cd01120 RecA-like_NTPases RecA 97.8 0.00014 3.1E-09 68.5 10.9 95 416-510 2-123 (165)
275 KOG1970|consensus 97.8 0.00047 1E-08 76.3 15.6 70 368-443 71-140 (634)
276 KOG2170|consensus 97.8 0.00021 4.5E-09 73.8 11.8 212 380-610 83-319 (344)
277 KOG0482|consensus 97.7 0.00013 2.8E-09 79.5 9.6 232 380-651 343-640 (721)
278 PF12774 AAA_6: Hydrolytic ATP 97.7 0.00061 1.3E-08 69.4 14.1 139 412-588 31-176 (231)
279 PF12775 AAA_7: P-loop contain 97.7 3.4E-05 7.3E-10 80.6 4.7 147 412-594 32-195 (272)
280 COG1116 TauB ABC-type nitrate/ 97.7 9.4E-05 2E-09 74.9 7.3 29 409-437 25-53 (248)
281 PF13401 AAA_22: AAA domain; P 97.7 6.8E-05 1.5E-09 68.7 5.8 73 412-484 3-99 (131)
282 COG3267 ExeA Type II secretory 97.7 0.0024 5.2E-08 64.9 16.8 74 569-643 190-267 (269)
283 PF00910 RNA_helicase: RNA hel 97.6 0.00017 3.6E-09 64.4 7.3 23 416-438 1-23 (107)
284 KOG0477|consensus 97.6 0.00066 1.4E-08 75.8 13.3 196 415-652 484-760 (854)
285 PRK10365 transcriptional regul 97.6 0.00065 1.4E-08 75.8 13.6 188 411-646 160-386 (441)
286 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00039 8.5E-09 75.4 10.1 30 410-439 59-88 (362)
287 PRK08118 topology modulation p 97.5 0.00041 8.8E-09 67.1 9.2 32 415-446 3-34 (167)
288 cd03216 ABC_Carb_Monos_I This 97.5 0.00053 1.2E-08 65.9 9.6 93 409-511 22-129 (163)
289 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00095 2.1E-08 62.9 10.7 92 409-510 22-116 (144)
290 COG1136 SalX ABC-type antimicr 97.5 0.00039 8.5E-09 70.1 8.4 27 409-435 27-53 (226)
291 TIGR02237 recomb_radB DNA repa 97.4 0.00055 1.2E-08 68.4 9.2 78 409-486 8-111 (209)
292 PRK05917 DNA polymerase III su 97.4 0.00045 9.8E-09 72.4 8.6 122 411-580 17-155 (290)
293 COG5271 MDN1 AAA ATPase contai 97.4 0.00044 9.6E-09 83.8 9.0 147 412-594 1542-1705(4600)
294 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00096 2.1E-08 65.2 10.0 91 410-510 22-117 (177)
295 cd03238 ABC_UvrA The excision 97.4 0.0022 4.8E-08 62.6 12.0 92 409-510 17-135 (176)
296 PRK11823 DNA repair protein Ra 97.3 0.00092 2E-08 74.8 10.3 80 409-488 76-172 (446)
297 PRK07276 DNA polymerase III su 97.3 0.0042 9.1E-08 65.3 14.1 154 411-622 22-198 (290)
298 PRK05818 DNA polymerase III su 97.3 0.0029 6.4E-08 65.1 12.6 121 411-579 5-147 (261)
299 KOG1968|consensus 97.3 0.00059 1.3E-08 81.1 8.5 164 415-628 359-535 (871)
300 COG3283 TyrR Transcriptional r 97.3 0.0021 4.6E-08 67.8 11.5 204 375-629 200-432 (511)
301 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.3E-09 64.8 3.5 31 416-446 2-32 (121)
302 cd00983 recA RecA is a bacter 97.3 0.0015 3.2E-08 69.7 10.6 79 409-487 51-148 (325)
303 PRK07261 topology modulation p 97.3 0.00088 1.9E-08 65.0 8.1 32 415-446 2-33 (171)
304 cd03228 ABCC_MRP_Like The MRP 97.3 0.0011 2.4E-08 64.2 8.6 92 409-510 24-142 (171)
305 TIGR02688 conserved hypothetic 97.3 0.014 3.1E-07 63.9 17.8 65 411-485 207-273 (449)
306 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0017 3.7E-08 61.8 9.6 91 410-510 22-126 (157)
307 cd01121 Sms Sms (bacterial rad 97.2 0.0015 3.2E-08 71.3 10.1 101 409-509 78-195 (372)
308 TIGR02012 tigrfam_recA protein 97.2 0.0018 3.8E-08 69.0 10.3 79 409-487 51-148 (321)
309 cd03247 ABCC_cytochrome_bd The 97.2 0.003 6.5E-08 61.5 11.2 92 409-510 24-144 (178)
310 COG1126 GlnQ ABC-type polar am 97.2 0.00094 2E-08 66.2 7.3 26 410-435 25-50 (240)
311 cd03246 ABCC_Protease_Secretio 97.2 0.003 6.5E-08 61.2 10.6 92 410-511 25-143 (173)
312 PHA02624 large T antigen; Prov 97.2 0.00098 2.1E-08 75.5 8.0 62 409-482 427-488 (647)
313 PRK07132 DNA polymerase III su 97.2 0.009 1.9E-07 63.3 14.8 123 413-590 18-160 (299)
314 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0028 6E-08 61.1 10.2 92 409-510 23-137 (166)
315 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0027 5.9E-08 61.6 10.1 92 410-511 23-142 (173)
316 COG2884 FtsE Predicted ATPase 97.1 0.0028 6.2E-08 61.7 9.8 29 409-437 24-52 (223)
317 PF14516 AAA_35: AAA-like doma 97.1 0.025 5.4E-07 60.9 18.4 176 411-624 29-242 (331)
318 KOG0479|consensus 97.1 0.01 2.2E-07 66.3 14.9 158 380-576 302-481 (818)
319 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.0012 2.6E-08 67.6 7.5 42 462-513 147-188 (254)
320 cd03283 ABC_MutS-like MutS-lik 97.1 0.0028 6.1E-08 63.1 9.8 27 409-435 21-47 (199)
321 cd03214 ABC_Iron-Siderophores_ 97.1 0.0033 7.1E-08 61.4 10.1 92 409-510 21-143 (180)
322 PRK08533 flagellar accessory p 97.1 0.0056 1.2E-07 62.4 12.1 37 409-445 20-59 (230)
323 PRK00131 aroK shikimate kinase 97.1 0.00057 1.2E-08 65.7 4.6 35 411-445 2-36 (175)
324 COG1120 FepC ABC-type cobalami 97.1 0.0028 6.2E-08 65.2 9.6 29 410-438 25-53 (258)
325 KOG0481|consensus 97.1 0.0052 1.1E-07 67.5 11.9 39 613-651 603-641 (729)
326 cd01124 KaiC KaiC is a circadi 97.0 0.0074 1.6E-07 58.8 12.1 30 416-445 2-34 (187)
327 PRK09361 radB DNA repair and r 97.0 0.0035 7.6E-08 63.4 9.9 39 409-447 19-60 (225)
328 PHA00729 NTP-binding motif con 97.0 0.0018 3.9E-08 65.4 7.5 25 414-438 18-42 (226)
329 COG1618 Predicted nucleotide k 97.0 0.005 1.1E-07 58.4 9.5 26 413-438 5-30 (179)
330 COG4178 ABC-type uncharacteriz 97.0 0.0018 3.9E-08 73.7 7.7 29 409-437 415-443 (604)
331 cd01394 radB RadB. The archaea 96.9 0.0078 1.7E-07 60.5 11.5 38 409-446 15-55 (218)
332 PF13671 AAA_33: AAA domain; P 96.9 0.0022 4.8E-08 59.6 6.9 34 416-451 2-35 (143)
333 TIGR02858 spore_III_AA stage I 96.9 0.0031 6.8E-08 65.7 8.5 26 414-439 112-137 (270)
334 cd03213 ABCG_EPDR ABCG transpo 96.9 0.0062 1.3E-07 60.3 10.1 93 409-511 31-158 (194)
335 cd03215 ABC_Carb_Monos_II This 96.9 0.0047 1E-07 60.4 9.2 92 410-511 23-151 (182)
336 cd03229 ABC_Class3 This class 96.9 0.0064 1.4E-07 59.3 9.9 92 410-511 23-147 (178)
337 COG1373 Predicted ATPase (AAA+ 96.8 0.051 1.1E-06 60.0 17.9 73 409-484 34-106 (398)
338 TIGR00416 sms DNA repair prote 96.8 0.0081 1.8E-07 67.4 11.5 79 409-487 90-185 (454)
339 COG1066 Sms Predicted ATP-depe 96.8 0.0065 1.4E-07 65.6 10.1 121 409-529 89-225 (456)
340 TIGR01420 pilT_fam pilus retra 96.8 0.0026 5.6E-08 68.9 6.9 71 412-482 121-205 (343)
341 PRK06762 hypothetical protein; 96.7 0.0052 1.1E-07 58.9 8.1 37 414-450 3-39 (166)
342 cd00227 CPT Chloramphenicol (C 96.7 0.0014 3.1E-08 63.7 4.2 38 413-450 2-39 (175)
343 cd03232 ABC_PDR_domain2 The pl 96.7 0.013 2.7E-07 57.9 11.0 92 410-511 30-155 (192)
344 COG1117 PstB ABC-type phosphat 96.7 0.0093 2E-07 59.2 9.7 28 409-436 29-56 (253)
345 COG1122 CbiO ABC-type cobalt t 96.7 0.0057 1.2E-07 62.5 8.6 30 409-438 26-55 (235)
346 COG3842 PotA ABC-type spermidi 96.7 0.0022 4.7E-08 68.9 5.7 27 410-436 28-54 (352)
347 PRK15455 PrkA family serine pr 96.7 0.002 4.4E-08 72.8 5.5 61 378-445 75-136 (644)
348 COG1485 Predicted ATPase [Gene 96.7 0.0077 1.7E-07 63.9 9.4 31 410-440 62-92 (367)
349 cd01131 PilT Pilus retraction 96.7 0.0029 6.3E-08 62.9 5.9 68 415-482 3-84 (198)
350 PRK09354 recA recombinase A; P 96.7 0.0077 1.7E-07 64.8 9.5 78 409-486 56-152 (349)
351 COG2805 PilT Tfp pilus assembl 96.7 0.0048 1E-07 64.1 7.5 72 411-482 123-208 (353)
352 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.01 2.2E-07 59.1 9.8 92 409-510 22-150 (200)
353 cd03243 ABC_MutS_homologs The 96.7 0.011 2.4E-07 58.9 10.0 25 411-435 27-51 (202)
354 cd01129 PulE-GspE PulE/GspE Th 96.6 0.005 1.1E-07 64.1 7.7 91 378-482 59-159 (264)
355 PRK03839 putative kinase; Prov 96.6 0.0016 3.5E-08 63.4 3.8 31 415-445 2-32 (180)
356 PRK13947 shikimate kinase; Pro 96.6 0.0019 4.1E-08 62.2 4.1 32 415-446 3-34 (171)
357 PRK13539 cytochrome c biogenes 96.6 0.015 3.2E-07 58.2 10.6 28 410-437 25-52 (207)
358 PF06309 Torsin: Torsin; Inte 96.6 0.011 2.4E-07 54.1 8.7 53 379-437 25-77 (127)
359 PRK05973 replicative DNA helic 96.6 0.035 7.6E-07 56.7 13.3 37 409-445 60-99 (237)
360 COG4525 TauB ABC-type taurine 96.6 0.0088 1.9E-07 58.5 8.3 30 409-438 27-56 (259)
361 PF13191 AAA_16: AAA ATPase do 96.6 0.0022 4.8E-08 62.1 4.3 59 381-449 2-63 (185)
362 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.019 4.2E-07 57.0 11.2 25 410-434 24-49 (200)
363 COG1127 Ttg2A ABC-type transpo 96.6 0.014 3.1E-07 58.9 10.0 43 461-513 152-194 (263)
364 cd00464 SK Shikimate kinase (S 96.6 0.0022 4.7E-08 60.4 3.9 31 415-445 1-31 (154)
365 COG2274 SunT ABC-type bacterio 96.6 0.018 3.8E-07 67.9 12.2 29 409-437 495-523 (709)
366 PRK13541 cytochrome c biogenes 96.5 0.027 5.8E-07 55.7 11.8 28 410-437 23-50 (195)
367 PF10443 RNA12: RNA12 protein; 96.5 0.16 3.4E-06 55.8 18.4 45 549-595 185-232 (431)
368 PHA02774 E1; Provisional 96.5 0.015 3.3E-07 65.9 10.8 38 409-446 430-468 (613)
369 PRK00625 shikimate kinase; Pro 96.5 0.0024 5.3E-08 62.1 4.0 31 415-445 2-32 (173)
370 PRK14532 adenylate kinase; Pro 96.5 0.0023 5.1E-08 62.7 4.0 31 415-445 2-32 (188)
371 cd03233 ABC_PDR_domain1 The pl 96.5 0.02 4.3E-07 57.1 10.6 30 409-438 29-58 (202)
372 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0024 5.1E-08 62.3 3.8 33 416-450 2-34 (183)
373 COG2804 PulE Type II secretory 96.5 0.0065 1.4E-07 67.5 7.6 92 377-482 236-337 (500)
374 COG3839 MalK ABC-type sugar tr 96.5 0.012 2.7E-07 62.9 9.4 28 410-437 26-53 (338)
375 TIGR01618 phage_P_loop phage n 96.5 0.0038 8.2E-08 63.0 5.3 23 413-435 12-34 (220)
376 COG1125 OpuBA ABC-type proline 96.5 0.012 2.7E-07 59.8 8.8 28 410-437 24-51 (309)
377 TIGR02211 LolD_lipo_ex lipopro 96.5 0.019 4E-07 57.8 10.3 29 409-437 27-55 (221)
378 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.01 2.2E-07 60.3 8.4 28 409-436 15-42 (235)
379 cd03227 ABC_Class2 ABC-type Cl 96.4 0.017 3.7E-07 55.4 9.4 26 412-437 20-45 (162)
380 COG1119 ModF ABC-type molybden 96.4 0.027 5.7E-07 57.2 10.9 29 409-437 53-81 (257)
381 PF00437 T2SE: Type II/IV secr 96.4 0.0036 7.8E-08 65.2 4.7 71 412-482 126-207 (270)
382 PF05707 Zot: Zonular occluden 96.4 0.0035 7.6E-08 62.0 4.4 29 549-579 118-146 (193)
383 PRK14531 adenylate kinase; Pro 96.4 0.0034 7.4E-08 61.5 4.2 30 415-444 4-33 (183)
384 PRK13538 cytochrome c biogenes 96.4 0.025 5.4E-07 56.3 10.5 29 409-437 23-51 (204)
385 PRK13949 shikimate kinase; Pro 96.4 0.0031 6.7E-08 61.1 3.8 31 415-445 3-33 (169)
386 COG1131 CcmA ABC-type multidru 96.4 0.013 2.8E-07 62.1 8.7 38 466-513 148-185 (293)
387 PRK06067 flagellar accessory p 96.3 0.014 3E-07 59.5 8.7 38 409-446 21-61 (234)
388 PRK13540 cytochrome c biogenes 96.3 0.034 7.4E-07 55.1 11.3 28 410-437 24-51 (200)
389 cd03269 ABC_putative_ATPase Th 96.3 0.028 6.1E-07 56.1 10.7 28 410-437 23-50 (210)
390 cd03293 ABC_NrtD_SsuB_transpor 96.3 0.019 4.1E-07 57.8 9.5 28 410-437 27-54 (220)
391 PRK09376 rho transcription ter 96.3 0.02 4.4E-07 62.2 10.1 27 412-438 168-194 (416)
392 PRK14530 adenylate kinase; Pro 96.3 0.0037 8E-08 62.9 4.3 31 414-444 4-34 (215)
393 KOG1051|consensus 96.3 0.038 8.2E-07 65.8 13.1 159 381-594 188-365 (898)
394 cd03301 ABC_MalK_N The N-termi 96.3 0.0098 2.1E-07 59.5 7.3 28 410-437 23-50 (213)
395 PRK06217 hypothetical protein; 96.3 0.0035 7.6E-08 61.4 4.0 31 415-445 3-33 (183)
396 cd03226 ABC_cobalt_CbiO_domain 96.3 0.018 4E-07 57.3 9.1 28 410-437 23-50 (205)
397 KOG3347|consensus 96.3 0.0031 6.7E-08 58.9 3.2 34 413-446 7-40 (176)
398 cd01128 rho_factor Transcripti 96.3 0.012 2.6E-07 60.7 7.9 30 410-439 13-42 (249)
399 cd02021 GntK Gluconate kinase 96.3 0.0035 7.6E-08 59.0 3.7 28 416-443 2-29 (150)
400 COG4650 RtcR Sigma54-dependent 96.3 0.0099 2.1E-07 61.2 7.0 78 406-486 201-296 (531)
401 PRK11650 ugpC glycerol-3-phosp 96.3 0.0086 1.9E-07 65.1 7.2 28 410-437 27-54 (356)
402 PRK13948 shikimate kinase; Pro 96.3 0.0047 1E-07 60.6 4.6 35 411-445 8-42 (182)
403 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.024 5.2E-07 57.8 10.0 29 409-437 23-51 (236)
404 cd01393 recA_like RecA is a b 96.3 0.016 3.5E-07 58.4 8.7 28 409-436 15-42 (226)
405 TIGR01188 drrA daunorubicin re 96.3 0.019 4.2E-07 60.9 9.5 29 409-437 15-43 (302)
406 PTZ00088 adenylate kinase 1; P 96.3 0.0048 1E-07 62.9 4.7 34 412-445 5-38 (229)
407 PRK10436 hypothetical protein; 96.3 0.012 2.6E-07 66.0 8.2 92 377-482 196-297 (462)
408 PRK05800 cobU adenosylcobinami 96.3 0.022 4.8E-07 55.3 9.1 32 415-446 3-34 (170)
409 PRK09452 potA putrescine/sperm 96.3 0.0096 2.1E-07 65.2 7.3 29 409-437 36-64 (375)
410 cd01130 VirB11-like_ATPase Typ 96.3 0.0072 1.6E-07 59.4 5.8 73 410-482 22-110 (186)
411 cd03268 ABC_BcrA_bacitracin_re 96.3 0.025 5.4E-07 56.4 9.7 28 410-437 23-50 (208)
412 PRK11248 tauB taurine transpor 96.2 0.025 5.4E-07 58.5 10.0 28 410-437 24-51 (255)
413 TIGR01313 therm_gnt_kin carboh 96.2 0.0036 7.8E-08 59.9 3.4 28 416-443 1-28 (163)
414 COG4181 Predicted ABC-type tra 96.2 0.012 2.6E-07 56.5 6.7 26 410-435 33-58 (228)
415 cd02020 CMPK Cytidine monophos 96.2 0.0041 8.9E-08 57.9 3.7 30 416-445 2-31 (147)
416 PRK00771 signal recognition pa 96.2 0.083 1.8E-06 58.9 14.5 27 411-437 93-119 (437)
417 COG3854 SpoIIIAA ncharacterize 96.2 0.01 2.2E-07 59.5 6.5 69 414-483 138-229 (308)
418 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.025 5.3E-07 58.3 9.7 28 410-437 22-49 (246)
419 smart00534 MUTSac ATPase domai 96.2 0.046 9.9E-07 53.7 11.2 19 416-434 2-20 (185)
420 PF04665 Pox_A32: Poxvirus A32 96.2 0.058 1.3E-06 55.2 12.1 28 411-438 11-38 (241)
421 COG3284 AcoR Transcriptional a 96.2 0.0077 1.7E-07 68.2 6.3 174 412-629 335-540 (606)
422 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.033 7.1E-07 56.1 10.3 22 414-435 30-51 (213)
423 cd01428 ADK Adenylate kinase ( 96.2 0.0043 9.3E-08 60.9 3.8 29 416-444 2-30 (194)
424 PRK09544 znuC high-affinity zi 96.2 0.023 5.1E-07 58.6 9.4 29 409-437 26-54 (251)
425 cd03259 ABC_Carb_Solutes_like 96.2 0.027 5.8E-07 56.4 9.6 29 409-437 22-50 (213)
426 COG4608 AppF ABC-type oligopep 96.2 0.014 3.1E-07 60.1 7.5 92 410-511 36-156 (268)
427 TIGR02525 plasmid_TraJ plasmid 96.2 0.01 2.2E-07 64.7 6.9 70 413-482 149-235 (372)
428 PF06414 Zeta_toxin: Zeta toxi 96.2 0.014 3.1E-07 58.0 7.4 44 411-454 13-57 (199)
429 PRK11176 lipid transporter ATP 96.2 0.031 6.8E-07 64.8 11.4 30 409-438 365-394 (582)
430 CHL00181 cbbX CbbX; Provisiona 96.2 0.006 1.3E-07 64.3 5.0 103 264-375 17-136 (287)
431 cd03218 ABC_YhbG The ABC trans 96.2 0.021 4.6E-07 57.9 8.8 28 410-437 23-50 (232)
432 PRK13543 cytochrome c biogenes 96.2 0.027 5.8E-07 56.6 9.4 29 409-437 33-61 (214)
433 PRK05057 aroK shikimate kinase 96.2 0.0062 1.3E-07 59.2 4.6 34 413-446 4-37 (172)
434 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.05 1.1E-06 54.9 11.5 38 409-446 12-52 (224)
435 cd03266 ABC_NatA_sodium_export 96.1 0.019 4.1E-07 57.7 8.3 29 409-437 27-55 (218)
436 TIGR03740 galliderm_ABC gallid 96.1 0.036 7.8E-07 55.9 10.4 29 409-437 22-50 (223)
437 PF06745 KaiC: KaiC; InterPro 96.1 0.023 5E-07 57.4 9.0 97 409-511 15-148 (226)
438 TIGR02782 TrbB_P P-type conjug 96.1 0.0049 1.1E-07 65.3 4.2 71 412-482 131-214 (299)
439 COG1124 DppF ABC-type dipeptid 96.1 0.025 5.3E-07 57.3 8.8 28 410-437 30-57 (252)
440 PRK13900 type IV secretion sys 96.1 0.009 2E-07 64.3 6.1 72 411-482 158-245 (332)
441 PF07693 KAP_NTPase: KAP famil 96.1 0.085 1.9E-06 56.2 13.6 30 411-440 18-47 (325)
442 TIGR03796 NHPM_micro_ABC1 NHPM 96.1 0.03 6.4E-07 66.6 11.1 30 409-438 501-530 (710)
443 PF12780 AAA_8: P-loop contain 96.1 0.18 3.9E-06 52.7 15.5 215 412-647 30-262 (268)
444 PRK14527 adenylate kinase; Pro 96.1 0.005 1.1E-07 60.7 3.8 34 411-444 4-37 (191)
445 COG0563 Adk Adenylate kinase a 96.1 0.0082 1.8E-07 58.7 5.2 33 415-449 2-34 (178)
446 KOG2383|consensus 96.1 0.035 7.7E-07 59.8 10.2 29 411-439 112-140 (467)
447 PRK06547 hypothetical protein; 96.1 0.0059 1.3E-07 59.4 4.1 35 411-445 13-47 (172)
448 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.023 4.9E-07 58.2 8.6 36 409-444 17-55 (237)
449 PRK13537 nodulation ABC transp 96.1 0.033 7.1E-07 59.3 10.1 28 410-437 30-57 (306)
450 COG4133 CcmA ABC-type transpor 96.1 0.06 1.3E-06 52.5 10.7 29 410-438 25-53 (209)
451 COG1102 Cmk Cytidylate kinase 96.1 0.0053 1.1E-07 58.2 3.5 30 416-445 3-32 (179)
452 PLN02200 adenylate kinase fami 96.1 0.0067 1.5E-07 62.0 4.6 39 411-451 41-79 (234)
453 cd03239 ABC_SMC_head The struc 96.1 0.056 1.2E-06 52.8 10.9 24 415-438 24-47 (178)
454 COG3840 ThiQ ABC-type thiamine 96.0 0.016 3.4E-07 56.2 6.6 29 409-437 21-49 (231)
455 COG0703 AroK Shikimate kinase 96.0 0.0052 1.1E-07 59.3 3.4 32 414-445 3-34 (172)
456 PRK03731 aroL shikimate kinase 96.0 0.0066 1.4E-07 58.5 4.2 32 414-445 3-34 (171)
457 cd03231 ABC_CcmA_heme_exporter 96.0 0.054 1.2E-06 53.8 10.9 28 410-437 23-50 (201)
458 cd03253 ABCC_ATM1_transporter 96.0 0.024 5.2E-07 57.7 8.6 29 409-437 23-51 (236)
459 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.033 7.1E-07 56.4 9.4 29 409-437 44-72 (224)
460 TIGR01186 proV glycine betaine 96.0 0.035 7.7E-07 60.4 10.2 28 410-437 16-43 (363)
461 PRK04841 transcriptional regul 96.0 0.18 3.9E-06 61.5 17.6 159 412-620 31-224 (903)
462 cd03278 ABC_SMC_barmotin Barmo 96.0 0.082 1.8E-06 52.5 12.0 26 411-437 21-46 (197)
463 PRK11432 fbpC ferric transport 96.0 0.028 6.2E-07 61.0 9.4 29 409-437 28-56 (351)
464 TIGR02314 ABC_MetN D-methionin 96.0 0.014 3E-07 63.1 7.0 28 410-437 28-55 (343)
465 PRK10790 putative multidrug tr 96.0 0.037 8E-07 64.4 11.0 30 409-438 363-392 (592)
466 PRK11247 ssuB aliphatic sulfon 96.0 0.039 8.5E-07 57.2 10.1 28 410-437 35-62 (257)
467 PRK04296 thymidine kinase; Pro 96.0 0.028 6.1E-07 55.5 8.5 24 414-437 3-26 (190)
468 COG1118 CysA ABC-type sulfate/ 96.0 0.025 5.5E-07 59.0 8.4 28 410-437 25-52 (345)
469 TIGR03265 PhnT2 putative 2-ami 96.0 0.032 7E-07 60.6 9.7 28 410-437 27-54 (353)
470 cd00984 DnaB_C DnaB helicase C 96.0 0.033 7.2E-07 56.8 9.4 37 409-445 9-49 (242)
471 cd03250 ABCC_MRP_domain1 Domai 96.0 0.05 1.1E-06 54.1 10.3 29 409-437 27-55 (204)
472 TIGR01360 aden_kin_iso1 adenyl 96.0 0.0056 1.2E-07 59.7 3.4 30 414-443 4-33 (188)
473 COG5271 MDN1 AAA ATPase contai 96.0 0.015 3.2E-07 71.4 7.3 145 412-592 887-1047(4600)
474 PRK11607 potG putrescine trans 96.0 0.028 6.1E-07 61.6 9.2 28 410-437 42-69 (377)
475 PRK13640 cbiO cobalt transport 95.9 0.044 9.5E-07 57.6 10.2 29 410-438 30-58 (282)
476 TIGR01351 adk adenylate kinase 95.9 0.0064 1.4E-07 60.9 3.7 30 416-445 2-31 (210)
477 PRK13946 shikimate kinase; Pro 95.9 0.0067 1.5E-07 59.5 3.8 35 412-446 9-43 (184)
478 PRK14528 adenylate kinase; Pro 95.9 0.0075 1.6E-07 59.3 4.1 31 415-445 3-33 (186)
479 TIGR02533 type_II_gspE general 95.9 0.019 4.1E-07 65.0 7.8 92 377-482 220-321 (486)
480 PRK13764 ATPase; Provisional 95.9 0.01 2.3E-07 68.2 5.7 70 412-482 256-334 (602)
481 TIGR02238 recomb_DMC1 meiotic 95.9 0.038 8.3E-07 58.9 9.7 27 409-435 92-118 (313)
482 PRK11174 cysteine/glutathione 95.9 0.04 8.7E-07 64.0 10.7 29 409-437 372-400 (588)
483 PRK02496 adk adenylate kinase; 95.9 0.0067 1.5E-07 59.3 3.7 31 415-445 3-33 (184)
484 TIGR01193 bacteriocin_ABC ABC- 95.9 0.047 1E-06 64.9 11.5 30 409-438 496-525 (708)
485 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.055 1.2E-06 54.9 10.3 25 411-435 29-53 (222)
486 TIGR03797 NHPM_micro_ABC2 NHPM 95.9 0.04 8.7E-07 65.3 10.8 30 409-438 475-504 (686)
487 cd03267 ABC_NatA_like Similar 95.9 0.036 7.7E-07 56.6 9.0 28 410-437 44-71 (236)
488 PRK08154 anaerobic benzoate ca 95.9 0.0098 2.1E-07 63.4 5.1 36 410-445 130-165 (309)
489 TIGR02203 MsbA_lipidA lipid A 95.9 0.026 5.6E-07 65.3 8.9 30 409-438 354-383 (571)
490 PRK13648 cbiO cobalt transport 95.9 0.049 1.1E-06 56.7 10.2 29 409-437 31-59 (269)
491 TIGR02788 VirB11 P-type DNA tr 95.9 0.013 2.8E-07 62.4 5.9 75 408-482 139-228 (308)
492 PRK11000 maltose/maltodextrin 95.9 0.031 6.8E-07 61.1 9.0 28 410-437 26-53 (369)
493 TIGR02868 CydC thiol reductant 95.8 0.062 1.3E-06 61.6 11.7 30 409-438 357-386 (529)
494 TIGR03258 PhnT 2-aminoethylpho 95.8 0.044 9.5E-07 59.8 9.9 28 410-437 28-55 (362)
495 PRK11153 metN DL-methionine tr 95.8 0.038 8.2E-07 59.8 9.3 29 409-437 27-55 (343)
496 PRK13851 type IV secretion sys 95.8 0.012 2.5E-07 63.6 5.3 73 410-482 159-246 (344)
497 PRK13635 cbiO cobalt transport 95.8 0.052 1.1E-06 56.9 10.1 29 409-437 29-57 (279)
498 PRK13833 conjugal transfer pro 95.8 0.014 3.1E-07 62.3 5.9 71 412-482 143-225 (323)
499 PRK13657 cyclic beta-1,2-gluca 95.8 0.06 1.3E-06 62.6 11.5 30 409-438 357-386 (588)
500 PRK04040 adenylate kinase; Pro 95.8 0.0092 2E-07 58.9 4.1 30 413-442 2-33 (188)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-79 Score=625.10 Aligned_cols=363 Identities=57% Similarity=0.886 Sum_probs=343.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCc
Q psy15936 140 LIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNC 219 (665)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~ 219 (665)
...+.+..+..+++.+...++++++++++|++.++++|++||+|+|++|++++||++++|++|+|++.+.+|++.|+||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~ 114 (406)
T COG1222 35 KEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGM 114 (406)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCC
Confidence 33334445677888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15936 220 RVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQ 299 (665)
Q Consensus 220 ~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~ 299 (665)
|||||+++++|+++||+++||.|++|.+++.|+
T Consensus 115 rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~Pd----------------------------------------------- 147 (406)
T COG1222 115 RVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPD----------------------------------------------- 147 (406)
T ss_pred EEEEcCCcceeeeeCCCccCchhheeeeccCCC-----------------------------------------------
Confidence 999999999999999999999998887666554
Q ss_pred CcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCcc
Q psy15936 300 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE 379 (665)
Q Consensus 300 ~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~ 379 (665)
++|+
T Consensus 148 ----------------------------------------------------------------------------vtY~ 151 (406)
T COG1222 148 ----------------------------------------------------------------------------VTYE 151 (406)
T ss_pred ----------------------------------------------------------------------------CChh
Confidence 4455
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchH
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~ 459 (665)
++||++++++++++.+++||.+|++|+.+|+.||+|||||||||||||+||+|+|++.++.|+++.++++..+|.|++.+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR 231 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR 231 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence 67777788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccc
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVT 539 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~ 539 (665)
.++++|+.|+.++|||+||||||+++++|.+..++++.++|+++.+||+++|||+..+++
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv-------------------- 291 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV-------------------- 291 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe--------------------
Confidence 999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHH
Q psy15936 540 QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVK 619 (665)
Q Consensus 540 ~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~ 619 (665)
+||+|||+++.|||||+||||||+.|+||+|+.+.|.+||++|.+++.+.+++|++.||..++|+||+||+
T Consensus 292 ---------KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk 362 (406)
T COG1222 292 ---------KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK 362 (406)
T ss_pred ---------EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc
Q psy15936 620 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 620 ~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 654 (665)
++|.+|.++|+++.+..||++||.+|++++.....
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999987553
No 2
>KOG0728|consensus
Probab=100.00 E-value=2.1e-72 Score=547.69 Aligned_cols=391 Identities=89% Similarity=1.269 Sum_probs=374.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeE
Q psy15936 123 SSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKF 202 (665)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~ 202 (665)
+...+..||..++.+++.++.+...+++++++|+++|+..++.+++|+..|+.++.+||+|++.+++++++||.++.++|
T Consensus 14 ~~e~~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKy 93 (404)
T KOG0728|consen 14 SGEGLRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKY 93 (404)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcE
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 203 VVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNEL 282 (665)
Q Consensus 203 vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el 282 (665)
+|.++..++..+++||.||+|.+++|+++++||+++||+|++|.+|+.|+.+|+++
T Consensus 94 vvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMi------------------------ 149 (404)
T KOG0728|consen 94 VVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMI------------------------ 149 (404)
T ss_pred EEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHh------------------------
Confidence 99999999999999999999999999999999999999999998877666555554
Q ss_pred HHHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCC
Q psy15936 283 NAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVD 362 (665)
Q Consensus 283 ~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 362 (665)
T Consensus 150 -------------------------------------------------------------------------------- 149 (404)
T KOG0728|consen 150 -------------------------------------------------------------------------------- 149 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE
Q psy15936 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442 (665)
Q Consensus 363 ~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li 442 (665)
||++.+++++++.+++|..||++|+.+|+..|+|+|||||||+|||.||+++|+..++.|+
T Consensus 150 -------------------GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fi 210 (404)
T KOG0728|consen 150 -------------------GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 210 (404)
T ss_pred -------------------ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEE
Confidence 4555666777888888999999999999999999999999999999999999999999999
Q ss_pred EEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccc
Q psy15936 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGV 522 (665)
Q Consensus 443 rv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~v 522 (665)
|++++++..+|.|++.+.++++|-.|+.|+|+|+|+||||++++.|.+..+++++++|+++.+|++++|||....++
T Consensus 211 rvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni--- 287 (404)
T KOG0728|consen 211 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI--- 287 (404)
T ss_pred EechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCC
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN 602 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vd 602 (665)
+||++||+.+-+||+|+||||+|+.|+||+|+.+.|.+|+++|.+++++...++
T Consensus 288 --------------------------kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~ 341 (404)
T KOG0728|consen 288 --------------------------KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN 341 (404)
T ss_pred --------------------------EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC
Confidence 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchhhhchHhhhC
Q psy15936 603 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665 (665)
Q Consensus 603 l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~~ 665 (665)
+..+|....|.||++++.+|.+|.++|+++++..+|++||+-|..+++.+++++++++..+||
T Consensus 342 l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~nms~~kl~k 404 (404)
T KOG0728|consen 342 LRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 404 (404)
T ss_pred HHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccccccchHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999997
No 3
>KOG0727|consensus
Probab=100.00 E-value=1.4e-63 Score=486.39 Aligned_cols=370 Identities=44% Similarity=0.731 Sum_probs=350.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcc
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNID 211 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~ 211 (665)
.-+++.++.+.+.++-+-.+++.+..+|++|..+.++|++++++.|+++|+++|.+|.+.+||.|.+|.+|+||+.+.+|
T Consensus 31 y~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vrilstid 110 (408)
T KOG0727|consen 31 YVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTID 110 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEeehhhhh
Confidence 34567788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 212 INDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRE 291 (665)
Q Consensus 212 ~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~ 291 (665)
++.|||++.|||++++.+++++||++.|+.+++|...++|
T Consensus 111 rellkps~svalhrhsnalvdvlppeadssi~ml~~~ekp---------------------------------------- 150 (408)
T KOG0727|consen 111 RELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKP---------------------------------------- 150 (408)
T ss_pred HHHcCCccchhhhhcccceeeccCCcccccccccCCCCCC----------------------------------------
Confidence 9999999999999999999999999999998665443333
Q ss_pred HHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhc
Q psy15936 292 ELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 371 (665)
Q Consensus 292 ~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid 371 (665)
T Consensus 151 -------------------------------------------------------------------------------- 150 (408)
T KOG0727|consen 151 -------------------------------------------------------------------------------- 150 (408)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
++.|.++||++-+++++++++++||.|.++|.++|+.||+|||+|||||||||+||+++|+...++|+|+.++++..
T Consensus 151 ---dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 151 ---DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred ---CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 44556788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
+|.|++.+.++.+|+.|+.++|+|+||||||+++.++.+...+++.++++.+.+|+++||||+...++
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nv------------ 295 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNV------------ 295 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccce------------
Confidence 99999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
+||++||+.+.+||+|+||||+|+.|+||.|+..+++-+|..+..++.+++++|++.+..+.+
T Consensus 296 -----------------kvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpd 358 (408)
T KOG0727|consen 296 -----------------KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPD 358 (408)
T ss_pred -----------------EEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
..|++||.++|++|.+.|.++++..|...||++|++....+.
T Consensus 359 kis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 359 KISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred ccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999988765
No 4
>KOG0652|consensus
Probab=100.00 E-value=1.7e-60 Score=466.54 Aligned_cols=371 Identities=44% Similarity=0.741 Sum_probs=348.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeC---------------------CC
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMD---------------------KK 190 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~---------------------~~ 190 (665)
..+..-|..+++.+++++.++..+...++..++...+.++..+.+|++||.|+|++| .+
T Consensus 26 ~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld~qrkgk 105 (424)
T KOG0652|consen 26 ISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLDSQRKGK 105 (424)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCcccccccccce
Confidence 355566778999999999999999999999999999999999999999999999997 24
Q ss_pred eEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHH
Q psy15936 191 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQ 270 (665)
Q Consensus 191 ~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~ 270 (665)
.++|++|+...|++.+-|.+|+++|+|||.|+||++|+.|.+.||+++|+.|..|.+++
T Consensus 106 caViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDe--------------------- 164 (424)
T KOG0652|consen 106 CAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDE--------------------- 164 (424)
T ss_pred eEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeecc---------------------
Confidence 57999999999999999999999999999999999999999999999999986665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccc
Q psy15936 271 NLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNES 350 (665)
Q Consensus 271 ~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~ 350 (665)
T Consensus 165 -------------------------------------------------------------------------------- 164 (424)
T KOG0652|consen 165 -------------------------------------------------------------------------------- 164 (424)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHH
Q psy15936 351 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430 (665)
Q Consensus 351 ~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA 430 (665)
-|+..|+++||++.+++++.+++.+|+.|++.|..+|+.+|+|+|+|||||||||.+|
T Consensus 165 ----------------------kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 165 ----------------------KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred ----------------------CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHH
Confidence 3345566788888888888889999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 431 ~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
++.|...+..|+.+.++.+...|.|.+.+.++..|..|+...|+|+||||+|+++.+|.++...++.++|+++.+|++++
T Consensus 223 RAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL 302 (424)
T KOG0652|consen 223 RACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 302 (424)
T ss_pred HHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHH
Q psy15936 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRI 590 (665)
Q Consensus 511 d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~ 590 (665)
|||+..+.+ +||++||+.+-+||+|+|+||+|+.|+||.|+.+.|.+|+++
T Consensus 303 DGFss~~~v-----------------------------KviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 303 DGFSSDDRV-----------------------------KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred cCCCCccce-----------------------------EEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 999988877 799999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc
Q psy15936 591 HSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 591 ~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 654 (665)
|.+++.+.++++++++|+.+++|+|++.+++|-+|.|.|+++....|+.+||.+++..+..+..
T Consensus 354 HsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKk 417 (424)
T KOG0652|consen 354 HSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKK 417 (424)
T ss_pred hhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999877543
No 5
>KOG0726|consensus
Probab=100.00 E-value=2.9e-60 Score=471.31 Aligned_cols=346 Identities=48% Similarity=0.799 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecC
Q psy15936 156 RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILP 235 (665)
Q Consensus 156 ~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp 235 (665)
.+-.....+.-+..++.|+..|+.||++.|++||+++||.++.|+.|+|.+.+++|++.|+||+.|.||...++|+.+|.
T Consensus 85 ~k~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~ 164 (440)
T KOG0726|consen 85 LKPQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQ 164 (440)
T ss_pred cCCchhhhHHHHhHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEec
Confidence 33344444455688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeccCCcce
Q psy15936 236 NKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV 315 (665)
Q Consensus 236 ~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~ 315 (665)
.+.||.|++|..|..|.
T Consensus 165 d~~dpmv~vmK~eKaP~--------------------------------------------------------------- 181 (440)
T KOG0726|consen 165 DDTDPMVSVMKVEKAPQ--------------------------------------------------------------- 181 (440)
T ss_pred cCCCccceeeecccCch---------------------------------------------------------------
Confidence 99999998887665443
Q ss_pred EEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHh
Q psy15936 316 LVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVI 395 (665)
Q Consensus 316 l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l 395 (665)
.+|.++||++.+++++++.+
T Consensus 182 ------------------------------------------------------------Ety~diGGle~QiQEiKEsv 201 (440)
T KOG0726|consen 182 ------------------------------------------------------------ETYADIGGLESQIQEIKESV 201 (440)
T ss_pred ------------------------------------------------------------hhhcccccHHHHHHHHHHhh
Confidence 23457788888899999999
Q ss_pred hcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeE
Q psy15936 396 ELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475 (665)
Q Consensus 396 ~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~V 475 (665)
++||.||+.|+.+|+.+|+||+|||+||||||.||+|+|+...+.|+|+-++++..+|.|.+.+.++++|+.|..++|+|
T Consensus 202 ELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSI 281 (440)
T KOG0726|consen 202 ELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 281 (440)
T ss_pred cCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC
Q psy15936 476 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555 (665)
Q Consensus 476 lliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn 555 (665)
+||||||+++.+|.+..+++..++|+++.+|+++++||+...++ +||+|||
T Consensus 282 vFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDv-----------------------------KvimATn 332 (440)
T KOG0726|consen 282 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV-----------------------------KVIMATN 332 (440)
T ss_pred EEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCe-----------------------------EEEEecc
Confidence 99999999999999999999999999999999999999988777 7999999
Q ss_pred CCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy15936 556 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV 635 (665)
Q Consensus 556 ~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~ 635 (665)
+.+.|||+|+||||+|+.|+|+.|+...++.||++|..++.+..+++++.+...-+.+||+||+++|.+|.+.|+++++.
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm 412 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM 412 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q psy15936 636 HVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 636 ~It~~d~~~Al~~~~~~~ 653 (665)
.++.+||..|.++++.+.
T Consensus 413 ~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 413 KVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred hccHHHHHHHHHHHHHhc
Confidence 999999999999998765
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.1e-56 Score=480.71 Aligned_cols=373 Identities=44% Similarity=0.719 Sum_probs=345.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCC
Q psy15936 129 PYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDK 208 (665)
Q Consensus 129 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~ 208 (665)
..+.+++..++.+++.++.+.++++.+.+.++++++++++|++.++++|+.+|+|+|++|++++||++++|++|+|++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 97 (398)
T PTZ00454 18 RDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILS 97 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEeccc
Confidence 34456667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 209 NIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM 288 (665)
Q Consensus 209 ~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~ 288 (665)
.++++.|+||++|++|+++++++++||++.||.+..|..+
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------------------------- 137 (398)
T PTZ00454 98 TLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMS---------------------------------------- 137 (398)
T ss_pred ccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhccc----------------------------------------
Confidence 9999999999999999999999999999989887443322
Q ss_pred HHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhh
Q psy15936 289 LREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLM 368 (665)
Q Consensus 289 ~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~ 368 (665)
T Consensus 138 -------------------------------------------------------------------------------- 137 (398)
T PTZ00454 138 -------------------------------------------------------------------------------- 137 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
..|+.+|+++||++.+++++++.+++|+.+++.|..+|+.+++++||+||||||||++|+++|+.++.+++++.+++
T Consensus 138 ---~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 138 ---EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred ---CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 23456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchh
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGM 528 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~ 528 (665)
+...|.|.....++.+|..++.+.|+|+||||+|.++..+.+...+.+...++.+.+++..++++....++
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v--------- 285 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV--------- 285 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE---------
Confidence 99999999999999999999999999999999999998887666777788899999999999988665444
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~ 608 (665)
.||+|||+++.+|++++||||||..|+|++|+.++|..||+.++.++++..++++..++.
T Consensus 286 --------------------~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 286 --------------------KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVS 345 (398)
T ss_pred --------------------EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
.++||||+||.++|++|.+.|+++++..|+.+||.+|++++..+.
T Consensus 346 ~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 346 RPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999997753
No 7
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.3e-54 Score=468.72 Aligned_cols=367 Identities=46% Similarity=0.763 Sum_probs=335.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcc
Q psy15936 134 KIEELQLIVAEKEQNLRRLQAQRN--ELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNID 211 (665)
Q Consensus 134 ~~~~l~~~~~~l~~~~~~~~~~~~--~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~ 211 (665)
++.+++.+.+.|..+.+.++.+.. .+++++..++++++.++++|+.||+|+|++|++++||++++|++|+|++.++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 138 (438)
T PTZ00361 59 RLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVD 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCC
Confidence 445566777777777777777774 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 212 INDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRE 291 (665)
Q Consensus 212 ~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~ 291 (665)
++.|+||++|+|+.++++|+++||+++||++++|..++
T Consensus 139 ~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~------------------------------------------ 176 (438)
T PTZ00361 139 KEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDK------------------------------------------ 176 (438)
T ss_pred HhhCCCCCEEEEcCCCCceEecCccccchhhhhccccc------------------------------------------
Confidence 99999999999999999999999999999986654433
Q ss_pred HHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhc
Q psy15936 292 ELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 371 (665)
Q Consensus 292 ~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid 371 (665)
T Consensus 177 -------------------------------------------------------------------------------- 176 (438)
T PTZ00361 177 -------------------------------------------------------------------------------- 176 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
.|..+|++++|++.+++++++++.+|+.+++.|..+|+.++.++||+||||||||++|+++|+.++.+|+++.++++..
T Consensus 177 -~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 -APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred -CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 2344566778888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.|.|.....++.+|..+..+.|+|+||||||.++..+....++.+.+.++.+.+++..++++....++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V------------ 323 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV------------ 323 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe------------
Confidence 99999999999999999999999999999999998887777778888899999999999988654433
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.++.+..++++..++..++
T Consensus 324 -----------------~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~ 386 (438)
T PTZ00361 324 -----------------KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKD 386 (438)
T ss_pred -----------------EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
||||+||+++|++|++.|+++++..|+.+||..|+++++..
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999764
No 8
>KOG0729|consensus
Probab=100.00 E-value=1.3e-53 Score=419.35 Aligned_cols=333 Identities=51% Similarity=0.814 Sum_probs=310.1
Q ss_pred HHHHHhcCceeEEEEEEeCC----CeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhh
Q psy15936 170 LQLLQEQGSYVGEVVKPMDK----KKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIK 245 (665)
Q Consensus 170 ~~~l~~~pl~vg~v~eil~~----~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m 245 (665)
...-...|+.|+.+..+++. .++++....-.+|+|.+...+++.+++.|+||++|+..|.|.--||++.||+|.+|
T Consensus 87 q~mq~eqplqvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm 166 (435)
T KOG0729|consen 87 QRMQEEQPLQVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMM 166 (435)
T ss_pred HHhcccCCceeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEE
Confidence 33334789999999999975 36888888889999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCee
Q psy15936 246 SSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKF 325 (665)
Q Consensus 246 ~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f 325 (665)
.+|+.|+++|+
T Consensus 167 ~veekpdvty~--------------------------------------------------------------------- 177 (435)
T KOG0729|consen 167 QVEEKPDVTYS--------------------------------------------------------------------- 177 (435)
T ss_pred EeecCCCcccc---------------------------------------------------------------------
Confidence 98886665443
Q ss_pred eeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHH
Q psy15936 326 VVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELF 405 (665)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f 405 (665)
++||..++++.+++.+++||.+|+.|
T Consensus 178 ------------------------------------------------------dvggckeqieklrevve~pll~perf 203 (435)
T KOG0729|consen 178 ------------------------------------------------------DVGGCKEQIEKLREVVELPLLHPERF 203 (435)
T ss_pred ------------------------------------------------------cccchHHHHHHHHHHHhccccCHHHH
Confidence 55566666777777888888888889
Q ss_pred HhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccc
Q psy15936 406 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 485 (665)
Q Consensus 406 ~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~ 485 (665)
-.+|+.+|++||+|||||||||.+|+++|+..++.|+|+-++++..+|+|++.+.++++|+.|+....|++|+||||+++
T Consensus 204 v~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaig 283 (435)
T KOG0729|consen 204 VNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIG 283 (435)
T ss_pred hhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCcccc
Q psy15936 486 SSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALL 565 (665)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLl 565 (665)
+.+.+++.+++.++|+++.++++++|||+...++ +|+++||+|+.|||+|+
T Consensus 284 garfddg~ggdnevqrtmleli~qldgfdprgni-----------------------------kvlmatnrpdtldpall 334 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI-----------------------------KVLMATNRPDTLDPALL 334 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHhccCCCCCCCe-----------------------------EEEeecCCCCCcCHhhc
Confidence 9999999999999999999999999999988877 79999999999999999
Q ss_pred CCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 566 RPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 566 r~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
||||+|+.++|..|+.+.|..||++|.+.+.+..++.++.||+.|...+|++|+.+|.+|.|+|++.++...|..||.+|
T Consensus 335 rpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~a 414 (435)
T KOG0729|consen 335 RPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDA 414 (435)
T ss_pred CCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcc
Q psy15936 646 VAKVMQKDS 654 (665)
Q Consensus 646 l~~~~~~~~ 654 (665)
+.++...+.
T Consensus 415 v~kvvkgy~ 423 (435)
T KOG0729|consen 415 VNKVVKGYA 423 (435)
T ss_pred HHHHHHHHH
Confidence 999987654
No 9
>KOG0730|consensus
Probab=100.00 E-value=1.6e-52 Score=456.95 Aligned_cols=357 Identities=36% Similarity=0.557 Sum_probs=318.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCce
Q psy15936 271 NLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCR 343 (665)
Q Consensus 271 ~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~ 343 (665)
+++++..+...+++.|+.++.++..+...|+.+|.++ |||+|||+++++ +.++.++...++++..++.|++..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~ 264 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETES 264 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHH
Confidence 4667888999999999999999999999999999987 999999999886 556677888888899999888776
Q ss_pred EEecccchhhhhhcCCCC-Ccchhhhh-----------------------------------------------------
Q psy15936 344 VALRNESYTLHKILPNKV-DPLVSLMM----------------------------------------------------- 369 (665)
Q Consensus 344 ~~l~~~~~~l~~~~~~~~-~~~i~~~e----------------------------------------------------- 369 (665)
.. |..|+.+.+.. |+++|+|+
T Consensus 265 ~L-----R~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR 339 (693)
T KOG0730|consen 265 NL-----RKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR 339 (693)
T ss_pred HH-----HHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc
Confidence 44 44444333333 33333322
Q ss_pred --------------------------------------------------------------------------------
Q psy15936 370 -------------------------------------------------------------------------------- 369 (665)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (665)
T Consensus 340 gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 340 GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRPS 419 (693)
T ss_pred CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCch
Confidence
Q ss_pred -----hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 370 -----VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 370 -----id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..+|++.|+++||+++.++++++.+++|+.+++.|.++|+.+|+|||||||||||||++|+|+|++.+.+|+.+
T Consensus 420 a~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 420 ALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred hhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 123578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccc
Q psy15936 445 SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCT 524 (665)
Q Consensus 445 ~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~ 524 (665)
.+.++.++|+|++++.++.+|+.|+..+|+|+|+||||+++..|+...+ ....+.+.+||++|||+....++
T Consensus 500 kgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V----- 571 (693)
T KOG0730|consen 500 KGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNV----- 571 (693)
T ss_pred cCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcE-----
Confidence 9999999999999999999999999999999999999999999963322 45668899999999999776544
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHH
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLR 604 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~ 604 (665)
.|||+||+|+.||+|++||||||+.|++|+|+.+.|.+||+.+++++++.+++|++
T Consensus 572 ------------------------~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~ 627 (693)
T KOG0730|consen 572 ------------------------LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLE 627 (693)
T ss_pred ------------------------EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHH
Confidence 69999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 605 KIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 605 ~la~~t~g~s~~dl~~l~~~A~~~A~~~~--~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
.||..|+||||+||..+|++|++.|+++. ...|+.+||.+|++.+.++.+...+..|+-|
T Consensus 628 ~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 628 ELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDF 689 (693)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 99999999999999999999999999985 4679999999999999999999988888766
No 10
>KOG0733|consensus
Probab=100.00 E-value=2.7e-52 Score=448.17 Aligned_cols=355 Identities=35% Similarity=0.523 Sum_probs=318.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCC
Q psy15936 269 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPN 341 (665)
Q Consensus 269 ~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~ 341 (665)
++++||++....+|.+.+.. ..+|+.|..+|+.||+|+ |||||||.|++| +-+..|+...++++++.+.|++
T Consensus 189 f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES 267 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267 (802)
T ss_pred hhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence 44455588888899998888 788999999999999998 999999999988 4456899999999999999999
Q ss_pred ceEEecccchhhhhhcCCCCCcchhhhhh---------------------------------------------------
Q psy15936 342 CRVALRNESYTLHKILPNKVDPLVSLMMV--------------------------------------------------- 370 (665)
Q Consensus 342 ~~~~l~~~~~~l~~~~~~~~~~~i~~~ei--------------------------------------------------- 370 (665)
++.+ +.+|.-|....||++|+|+|
T Consensus 268 Ekki-----RelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 268 EKKI-----RELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred HHHH-----HHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 8877 88888777777777666542
Q ss_pred --------------------------------------------------------------------------------
Q psy15936 371 -------------------------------------------------------------------------------- 370 (665)
Q Consensus 371 -------------------------------------------------------------------------------- 370 (665)
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy15936 371 -------------------------------------------------------------------------------- 370 (665)
Q Consensus 371 -------------------------------------------------------------------------------- 370 (665)
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
-.+|+++|+++||++++..++..+|..|..+||.|+.+|+..|.|||||||||||||.||+|+|++.+.+|+.+.++++.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 02577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
++|+|+++++++++|+.|+..+|||+|+||+|+|.+.|+... .....+.+++||..+||.....++
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV----------- 648 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGV----------- 648 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccce-----------
Confidence 999999999999999999999999999999999999996544 445678899999999999776554
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc--cCCCCCCCCHHHHHH
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR--KMNLTRGINLRKIAE 608 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~--~~~~~~~vdl~~la~ 608 (665)
.||+|||+|+.+|||++||||||..+++++|+.++|.+||+.+++ +.+++.++|++.||.
T Consensus 649 ------------------~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 649 ------------------YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred ------------------EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 699999999999999999999999999999999999999999999 778899999999999
Q ss_pred HCC--CCCHHHHHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHHhhhcchhhhchH
Q psy15936 609 LMP--GASGAEVKGVCTEAGMYALRER----------------RVHVTQEDFEMAVAKVMQKDSEKNMSIK 661 (665)
Q Consensus 609 ~t~--g~s~~dl~~l~~~A~~~A~~~~----------------~~~It~~d~~~Al~~~~~~~~~~~~~~~ 661 (665)
.+. ||||+||..+|++|.+.|+++. ...+|..||.+|++++.+++++.....|
T Consensus 711 ~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Y 781 (802)
T KOG0733|consen 711 NTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKY 781 (802)
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHH
Confidence 776 9999999999999999999872 1247888999999999999887665444
No 11
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.9e-50 Score=437.51 Aligned_cols=374 Identities=52% Similarity=0.865 Sum_probs=342.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCc
Q psy15936 131 YVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNI 210 (665)
Q Consensus 131 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v 210 (665)
+.+++.+++.++++++++++++..+.+.+++++++++++++.++.+|+.+|+|++.+++++++|++++|.+|++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~ 85 (389)
T PRK03992 6 LEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFI 85 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccC
Confidence 45566678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 211 DINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR 290 (665)
Q Consensus 211 ~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~ 290 (665)
+...|+||++|++++.+.++++++|+..|+.+..|.
T Consensus 86 ~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~-------------------------------------------- 121 (389)
T PRK03992 86 DREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAME-------------------------------------------- 121 (389)
T ss_pred CHhHCCCCCEEEEcCcchhhhhcccccccchhheee--------------------------------------------
Confidence 999999999999999899999999887766542111
Q ss_pred HHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhh
Q psy15936 291 EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMV 370 (665)
Q Consensus 291 ~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~ei 370 (665)
+
T Consensus 122 -------------------------------------------------------------------------------~ 122 (389)
T PRK03992 122 -------------------------------------------------------------------------------V 122 (389)
T ss_pred -------------------------------------------------------------------------------e
Confidence 1
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
...|...|++++|++++++++++.+.+|+.+++.|..+|+.+++++||+||||||||++|+++|+.++.+|+.+.++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 23345677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
..|.|.....++.+|..+..+.|+++||||+|.++..+.+...+.+.+.++.+.+++..++++....++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v----------- 271 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV----------- 271 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE-----------
Confidence 999999999999999999999999999999999998887666667788899999999999887654433
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHC
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t 610 (665)
.||+|||+++.+|++++||||||..|+|++|+.++|.+||+.+++++.+..++++..+|..+
T Consensus 272 ------------------~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t 333 (389)
T PRK03992 272 ------------------KIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELT 333 (389)
T ss_pred ------------------EEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHc
Confidence 69999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchh
Q psy15936 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656 (665)
Q Consensus 611 ~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 656 (665)
+||+|+||+.+|++|++.|++++...|+.+||.+|++++.+....+
T Consensus 334 ~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 334 EGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999998876654
No 12
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.9e-48 Score=416.45 Aligned_cols=361 Identities=53% Similarity=0.864 Sum_probs=331.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCC
Q psy15936 137 ELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVT 216 (665)
Q Consensus 137 ~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~ 216 (665)
+++.++++++++++.+..+.+.+++++++++++++.++.+|..+|+|++.++++++++++++|.+|++++.+.++...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLK 82 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLL 296 (665)
Q Consensus 217 pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~ 296 (665)
||++|++++.+++++.++|...||.+..|..
T Consensus 83 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------------------------- 113 (364)
T TIGR01242 83 PGARVALNQQTLTIVDVLPTSKDPLVKGMEV------------------------------------------------- 113 (364)
T ss_pred CCCEEEEcCCcceEEeeccccccccccccee-------------------------------------------------
Confidence 9999999999999999999887776422111
Q ss_pred hhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCC
Q psy15936 297 QEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376 (665)
Q Consensus 297 ~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~ 376 (665)
...|..
T Consensus 114 --------------------------------------------------------------------------~~~p~~ 119 (364)
T TIGR01242 114 --------------------------------------------------------------------------EERPNV 119 (364)
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 122345
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhcc
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 456 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~ 456 (665)
.|++++|++++++++++.+.+|+.+++.|..+|+.+++++||+||||||||++|+++|+.++.+++++.+.++...+.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999998888898
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhc
Q psy15936 457 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV 536 (665)
Q Consensus 457 ~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~ 536 (665)
....++.+|..+..+.|+++|+||+|.+...+.....+.+++.++.+.+++..++++....++
T Consensus 200 ~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v----------------- 262 (364)
T TIGR01242 200 GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNV----------------- 262 (364)
T ss_pred HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCE-----------------
Confidence 888899999999999999999999999988877666677888889999999999887544333
Q ss_pred ccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHH
Q psy15936 537 HVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGA 616 (665)
Q Consensus 537 ~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~ 616 (665)
.||+|||+++.+|+++++||||+..|+|+.|+.++|.+||+.++....+..++++..++..++||+|+
T Consensus 263 ------------~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~ 330 (364)
T TIGR01242 263 ------------KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGA 330 (364)
T ss_pred ------------EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHH
Confidence 69999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy15936 617 EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649 (665)
Q Consensus 617 dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 649 (665)
||..+|++|.+.|+++++..|+.+||.+|++++
T Consensus 331 dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 331 DLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999999999999999999999999999876
No 13
>KOG0651|consensus
Probab=100.00 E-value=2.6e-49 Score=397.22 Aligned_cols=359 Identities=46% Similarity=0.743 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCc
Q psy15936 140 LIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNC 219 (665)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~ 219 (665)
.........++..+.....+.+++.+..+.+..+++.+.++|.|.+.+++.+.+||.+.|++|+|+|...+|+.+|++|+
T Consensus 17 ~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~ 96 (388)
T KOG0651|consen 17 LSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGT 96 (388)
T ss_pred hhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCc
Confidence 34455566777777777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15936 220 RVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQ 299 (665)
Q Consensus 220 ~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~ 299 (665)
||+++-.+++|++.||.++| +|+.|.+++...
T Consensus 97 rv~ldittltIm~~lprevd-~vy~m~~e~~~~----------------------------------------------- 128 (388)
T KOG0651|consen 97 RVVLDITTLTIMRGLPREVD-LVYNMSHEDPRN----------------------------------------------- 128 (388)
T ss_pred eeeeeeeeeehhcccchHHH-HHHHhhhcCccc-----------------------------------------------
Confidence 99999999999999999999 887766554332
Q ss_pred CcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCcc
Q psy15936 300 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE 379 (665)
Q Consensus 300 ~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~ 379 (665)
..|+
T Consensus 129 ----------------------------------------------------------------------------~s~~ 132 (388)
T KOG0651|consen 129 ----------------------------------------------------------------------------ISFE 132 (388)
T ss_pred ----------------------------------------------------------------------------cCHH
Confidence 2445
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchH
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~ 459 (665)
.++|+-.++.++++.+++|+.+|++|-..|+.+|++++||||||+|||.+|+++|..+|.+|+.+..+.+..+|.|+..+
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaR 212 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESAR 212 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHH
Confidence 66777778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccc
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVT 539 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~ 539 (665)
.+++.|..|+.+.||++|+||||++++.+....+.++.+++++|.+|+++++++.....+
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rV-------------------- 272 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRV-------------------- 272 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccc--------------------
Confidence 999999999999999999999999999998888999999999999999999999766544
Q ss_pred hhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHH
Q psy15936 540 QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVK 619 (665)
Q Consensus 540 ~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~ 619 (665)
++|+|||+|+.|+|+|+||||+|+.+++|.|+...|..|++.|...+..-..+|.+.+....+||+|+|++
T Consensus 273 ---------k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~r 343 (388)
T KOG0651|consen 273 ---------KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLR 343 (388)
T ss_pred ---------cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHh
Confidence 79999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 620 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 620 ~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
+.|++|.++|+++.+..+-.+||..++.++-.
T Consensus 344 n~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 344 NVCTEAGMFAIPEERDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred hhcccccccccchhhHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
No 14
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6e-42 Score=378.64 Aligned_cols=418 Identities=31% Similarity=0.484 Sum_probs=336.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEE-eCCCeEEEEEeCCCeEEEEcCCCcccCCC
Q psy15936 137 ELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDIDKNIDINDV 215 (665)
Q Consensus 137 ~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~ei-l~~~~~iVk~~~~~~~vv~v~~~v~~~~l 215 (665)
++..++..+.++..++...+++.+.++..+++++++|..||+..|++++. .+++.+-| .++|.++.|.+++.++...|
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~~~l 83 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEV-FTAGRRMRVTVSPNVNAAEL 83 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEE-EeCCceEEEEeCCCCCHHHC
Confidence 46677888888888888888889999999999999999999999999998 66666666 78889999999999999999
Q ss_pred CCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 216 TPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQL 295 (665)
Q Consensus 216 ~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~ 295 (665)
.||++|.|| .++.+++..+. |+.
T Consensus 84 ~~g~~v~l~-e~~~~v~~~~~--~~~------------------------------------------------------ 106 (512)
T TIGR03689 84 VPGQTVRLN-EALQVVEARDF--ETV------------------------------------------------------ 106 (512)
T ss_pred CCCCEEEEC-CcceeeccCCC--CCC------------------------------------------------------
Confidence 999999998 48888887741 111
Q ss_pred HhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCC
Q psy15936 296 LQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPD 375 (665)
Q Consensus 296 ~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~ 375 (665)
| .+.+.....++..++++.+.+..+++.....+....+.+|..+.+...+......+++. .+....++..|+
T Consensus 107 ----g-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~p~ 178 (512)
T TIGR03689 107 ----G-EIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPKA---EVEDLVLEEVPD 178 (512)
T ss_pred ----C-ceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCHh---HHhcceeecCCC
Confidence 0 11123344445677888888888888888888888888999988876655555444432 233334678899
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------eEEEe
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT----------FIRVS 445 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~----------lirv~ 445 (665)
.+|++++|++.+++++++.+.+|+.+++.|...|+.+++++|||||||||||++|+++|+.++.+ |+.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999998643 56677
Q ss_pred chhhhhhhhccchHHHHHHHHHHHhc----CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccc
Q psy15936 446 GSELVQKFIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521 (665)
Q Consensus 446 ~~dl~~~~~g~~~~~~~~if~~a~~~----~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~ 521 (665)
++++...|.+..++.++.+|..++.. .|+|+||||+|.++..+....+ +......+.+|+..++++....++
T Consensus 259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~V-- 334 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNV-- 334 (512)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCce--
Confidence 78888889999999999999988764 6899999999999887743221 222345678999999988654433
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc-CCCC--
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK-MNLT-- 598 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~-~~~~-- 598 (665)
.||+|||+++.||++++||||||..|+|++|+.++|.+||+.++.. +++.
T Consensus 335 ---------------------------iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~ 387 (512)
T TIGR03689 335 ---------------------------IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDAD 387 (512)
T ss_pred ---------------------------EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHH
Confidence 6999999999999999999999999999999999999999999864 3331
Q ss_pred -------CCCCHHHHHH-----------------------------HCCCCCHHHHHHHHHHHHHHHHHh----cCCCCC
Q psy15936 599 -------RGINLRKIAE-----------------------------LMPGASGAEVKGVCTEAGMYALRE----RRVHVT 638 (665)
Q Consensus 599 -------~~vdl~~la~-----------------------------~t~g~s~~dl~~l~~~A~~~A~~~----~~~~It 638 (665)
...+...++. .++.+||+.|+++|.+|...|+.+ +...|+
T Consensus 388 l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~ 467 (512)
T TIGR03689 388 LAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLR 467 (512)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcC
Confidence 1112222222 145689999999999999999876 346899
Q ss_pred HHHHHHHHHHHhh
Q psy15936 639 QEDFEMAVAKVMQ 651 (665)
Q Consensus 639 ~~d~~~Al~~~~~ 651 (665)
.+|+..|+..-..
T Consensus 468 ~~~l~~a~~~e~~ 480 (512)
T TIGR03689 468 IEHLLAAVLDEFR 480 (512)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987654
No 15
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.5e-43 Score=410.56 Aligned_cols=262 Identities=47% Similarity=0.797 Sum_probs=239.3
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~ 452 (665)
.|..+|++++|++..++.+++.+.+|+.+++.|+.+|+.++.++|||||||||||++|+++|.+++.+|+.+.++++...
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 453 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
|.|..+..++.+|..++...|+|+||||||++++.+..... .....+.+.+|+..++++....++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v------------- 591 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNV------------- 591 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCE-------------
Confidence 99999999999999999999999999999999987743322 224567788999999987544433
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.||+|||+|+.+|++++||||||..|++++|+.++|.+||+.+.++.++..++++..+|..++|
T Consensus 592 ----------------~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g 655 (733)
T TIGR01243 592 ----------------VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEG 655 (733)
T ss_pred ----------------EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHhhhcchhhhchHhhhC
Q psy15936 613 ASGAEVKGVCTEAGMYALRER------------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~------------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~~ 665 (665)
|||+||..+|++|++.|+++. ...|+.+||..|++++.++.+.+.+..++.|+
T Consensus 656 ~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~ 726 (733)
T TIGR01243 656 YTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLA 726 (733)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999998852 13699999999999999999999888888883
No 16
>KOG0734|consensus
Probab=100.00 E-value=9.9e-41 Score=354.16 Aligned_cols=250 Identities=41% Similarity=0.657 Sum_probs=235.2
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
-+++|+|+-|.|+.++++.+.+++ |..|..|..+|..-|+||||.||||||||+||||+|.+.+.+|+...++++-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 367899999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
+|.+.+.++++|..|+.++|||+||||||+++++|.... .....+++++||..||||.....+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGi-------------- 440 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGI-------------- 440 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCce--------------
Confidence 999999999999999999999999999999999884322 126678999999999999877655
Q ss_pred hhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGA 613 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~ 613 (665)
+||++||.|+.||+||.||||||++|.+|.||...|.+||+.|+.++.++.++|+..||+-|.||
T Consensus 441 ---------------IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GF 505 (752)
T KOG0734|consen 441 ---------------IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGF 505 (752)
T ss_pred ---------------EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchh
Q psy15936 614 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656 (665)
Q Consensus 614 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 656 (665)
+|+||.++++.|+..|...+...+++.|++.|-++++-....+
T Consensus 506 sGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 506 SGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred chHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeeccccc
Confidence 9999999999999999999999999999999999987654443
No 17
>KOG0738|consensus
Probab=100.00 E-value=2.2e-40 Score=341.37 Aligned_cols=267 Identities=42% Similarity=0.623 Sum_probs=242.5
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
|.+..-|.++|+|+.|++++++-|++++.+|+..|+.|..+. .|=++||++||||||||+||+|+|.+++..|+.++.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 445667889999999999999999999999999999999533 4448999999999999999999999999999999999
Q ss_pred hhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccch
Q psy15936 448 ELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAG 527 (665)
Q Consensus 448 dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg 527 (665)
.+.++|-|++++.++-+|..|+.++|+++||||||+|+..|. .++.|...++.-.+||-+|||..+...-.
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG--~s~EHEaSRRvKsELLvQmDG~~~t~e~~------- 350 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRG--GSSEHEASRRVKSELLVQMDGVQGTLENS------- 350 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCC--CccchhHHHHHHHHHHHHhhccccccccc-------
Confidence 999999999999999999999999999999999999999884 34556666777889999999986543210
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHH
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIA 607 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la 607 (665)
..++|+|+||-||.||.||+| ||..+|.+|.|+.++|..+++..++....+++++++.|+
T Consensus 351 ------------------k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~la 410 (491)
T KOG0738|consen 351 ------------------KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLA 410 (491)
T ss_pred ------------------eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHH
Confidence 122799999999999999999 999999999999999999999999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~-----------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
..++||||+||.++|++|.+.+.++. ...++..||+.|++++.+..+...+.-++.|
T Consensus 411 e~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW 484 (491)
T KOG0738|consen 411 ERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKW 484 (491)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHH
Confidence 99999999999999999999999862 2469999999999999999999999999998
No 18
>KOG0736|consensus
Probab=100.00 E-value=6.4e-40 Score=360.78 Aligned_cols=261 Identities=41% Similarity=0.732 Sum_probs=236.5
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
.+|+++|+|+||++++|.++.+.|.+||.|+++|. .|+.+..|||||||||||||.+|+|+|-++..+|+.+.++++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 48999999999999999999999999999999998 48888999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc--cCccccccccchhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKGVCTEAGMY 529 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~--~~~i~~vc~eAg~~ 529 (665)
.|+|+++..+|++|+.|+..+|||+|+||+|+++++|+..++++. -.-+++.+||.++||.+. .+++
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~V---------- 812 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDV---------- 812 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCce----------
Confidence 999999999999999999999999999999999999965544331 345788999999999974 3323
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC-HHHHHHHHHHhhccCCCCCCCCHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN-EEARLDILRIHSRKMNLTRGINLRKIAE 608 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~-~eer~~Il~~~l~~~~~~~~vdl~~la~ 608 (665)
+||+|||+|+.|||+|+||||||..+++.+++ .+.+..+|+...+++.+++++|+..+|.
T Consensus 813 -------------------FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk 873 (953)
T KOG0736|consen 813 -------------------FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAK 873 (953)
T ss_pred -------------------EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHh
Confidence 79999999999999999999999999998764 5777889999999999999999999999
Q ss_pred HCC-CCCHHHHHHHHHHHHHHHHHhc-----------------CCCCCHHHHHHHHHHHhhhcchhhhchHhh
Q psy15936 609 LMP-GASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKL 663 (665)
Q Consensus 609 ~t~-g~s~~dl~~l~~~A~~~A~~~~-----------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~ 663 (665)
.++ .|||+|+-++|..|++.|+++. ...|+++||.+|++++.++.+..++.-|+-
T Consensus 874 ~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~ 946 (953)
T KOG0736|consen 874 KCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEM 946 (953)
T ss_pred hCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 986 5999999999999999999872 135999999999999999999888776653
No 19
>KOG0733|consensus
Probab=100.00 E-value=2.3e-38 Score=341.07 Aligned_cols=229 Identities=41% Similarity=0.695 Sum_probs=210.8
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhh
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 454 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~ 454 (665)
++.|+++||++.+..++.+++.. +.+|+.|..+|+.|++|||||||||||||+||+++|.+++.+|+.+.+.++.+.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 56899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 455 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 455 g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
|++++.++++|..|...+|||+||||||++.++|.. +...-.++++.+|+..||+.+....
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~---------------- 325 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKT---------------- 325 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhccccccc----------------
Confidence 999999999999999999999999999999998833 2333345778899999999754321
Q ss_pred hcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCC
Q psy15936 535 RVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGAS 614 (665)
Q Consensus 535 r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s 614 (665)
.-+-+.||+|||+|+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+..||..|+||.
T Consensus 326 ---------~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 326 ---------KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFV 396 (802)
T ss_pred ---------CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCcc
Confidence 11113699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15936 615 GAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 615 ~~dl~~l~~~A~~~A~~~ 632 (665)
|+||.++|.+|+..|+++
T Consensus 397 GADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 397 GADLMALCREAAFVAIKR 414 (802)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999999999887
No 20
>KOG0731|consensus
Probab=100.00 E-value=5.6e-38 Score=352.96 Aligned_cols=248 Identities=46% Similarity=0.798 Sum_probs=234.8
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhh
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 454 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~ 454 (665)
.+.|.|+.|.++.+++|.+.+.+ |.+|+.|..+|...|+|+||+||||||||.||+|+|.+.+.||+.++++++...+.
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 47899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCc-CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 455 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI-ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 455 g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~-~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
+.....++.+|..++.++||++|+||||.++..+. ....+.+.+...++++|+.+|||+.....+
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v-------------- 451 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV-------------- 451 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE--------------
Confidence 99999999999999999999999999999999884 335577788889999999999999776544
Q ss_pred hhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPG 612 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g 612 (665)
.|+++||+++.+|+||+||||||+.|.++.|+..+|.+|++.|++...++ +++|+..+|..|+|
T Consensus 452 ---------------i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~g 516 (774)
T KOG0731|consen 452 ---------------IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPG 516 (774)
T ss_pred ---------------EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCC
Confidence 69999999999999999999999999999999999999999999999986 88899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
|+|+||.++|++|+..|.++....|+..||..|++++...
T Consensus 517 f~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 517 FSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred CcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999987765
No 21
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=349.05 Aligned_cols=239 Identities=23% Similarity=0.372 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
||||++|++|++|.|++|+.+|++|.++|+.||+|+ |||||||+|+|| +++++|+.+++|+|+++|+|+|+++
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 455999999999999999999999999999999998 999999999988 7789999999999999999999999
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 424 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGt 424 (665)
+ |.+|.+|+.++|||+|+||||+++..||++-.|.+.++|++ ++++ |+++|+|+ |.|.
T Consensus 233 V-----RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRT--mleL-L~qlDGFD--------------~~~n 290 (406)
T COG1222 233 V-----RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRT--MLEL-LNQLDGFD--------------PRGN 290 (406)
T ss_pred H-----HHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHH--HHHH-HHhccCCC--------------CCCC
Confidence 9 99999999999999999999999999999999999999987 8888 88898888 6677
Q ss_pred hHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHH
Q psy15936 425 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504 (665)
Q Consensus 425 GKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~ 504 (665)
-|..+|+|+++.||++++|+++.|++.+++.++...+..||.+ |..++.+-|+|| +.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I---HtrkM~l~~dvd--------------------~e 347 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI---HTRKMNLADDVD--------------------LE 347 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH---HhhhccCccCcC--------------------HH
Confidence 7888999999999999999999999999999999999999999 677789999999 88
Q ss_pred HHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCC
Q psy15936 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556 (665)
Q Consensus 505 ~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~ 556 (665)
.++..+++++|++ ++++|+||||+|+|++|.+|+++||..|+.+|+...+.
T Consensus 348 ~la~~~~g~sGAd-lkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 348 LLARLTEGFSGAD-LKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred HHHHhcCCCchHH-HHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhcccc
Confidence 9999999999998 99999999999999999999999999999999887654
No 22
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=337.35 Aligned_cols=254 Identities=43% Similarity=0.735 Sum_probs=242.4
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
..++|.|+.|.+++++++.+.+.. |.+|.-|..+|..-|+|++|+||||||||+||+++|.+.+.||+.++++++...|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 467899999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
+|-+...+|++|..+++++|||+||||||++...|....++++.+..+++++++..||||.+...+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv-------------- 289 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV-------------- 289 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce--------------
Confidence 999999999999999999999999999999999998777888889999999999999999866555
Q ss_pred hhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGA 613 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~ 613 (665)
.|+++||+|+-+|+||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||
T Consensus 290 ---------------iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGf 354 (596)
T COG0465 290 ---------------IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGF 354 (596)
T ss_pred ---------------EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchhh
Q psy15936 614 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657 (665)
Q Consensus 614 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~ 657 (665)
+|+|+.+++++|+..|.++++..|++.||.+|..+++.....+.
T Consensus 355 sGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 355 SGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred ccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCC
Confidence 99999999999999999999999999999999999998655544
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=290.15 Aligned_cols=244 Identities=36% Similarity=0.606 Sum_probs=221.9
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
.+++.+++++.|+++.++..+-.+++ |.+|+.|..| .|++||+|||||||||++|+++|++++.+++.+....+..
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 46678899999999999998777776 9999999876 4889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
+++|...+.++++++.|+..+|||+||||+|+++-.|... ....++...++.||..+||.....++
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGV------------ 255 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGV------------ 255 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCce------------
Confidence 9999999999999999999999999999999998776433 23446788899999999998765543
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
..|++||+|+.||+++++ ||...|+|..|+.++|.+|++.+++.+++.-+.++..++..+.
T Consensus 256 -----------------vtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~ 316 (368)
T COG1223 256 -----------------VTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTK 316 (368)
T ss_pred -----------------EEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhC
Confidence 489999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 612 GASGAEVK-GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 612 g~s~~dl~-~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
|+||+||. .++..|...|+.+++..|+.+||..|+++.+..
T Consensus 317 g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 317 GMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKERKR 358 (368)
T ss_pred CCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhhccc
Confidence 99999997 578889999999999999999999999985543
No 24
>KOG0735|consensus
Probab=100.00 E-value=5e-35 Score=319.47 Aligned_cols=225 Identities=40% Similarity=0.680 Sum_probs=214.7
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhc
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g 455 (665)
.+|+++||+.++++.+++.+++|-.+|.+|...++.-+.|+|||||||||||.||-++|...+..|+.+.++++..+|.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 456 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 456 ~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
.+++.+|.+|..|+...|||+|+||+|+++++|+.+..|. .-+.+++++.++||..+-+++
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV---------------- 804 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGV---------------- 804 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceE----------------
Confidence 9999999999999999999999999999999997776664 357799999999999886655
Q ss_pred cccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCH
Q psy15936 536 VHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASG 615 (665)
Q Consensus 536 ~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~ 615 (665)
.|+|+|.+|+.+||||+||||+|+.+..+.|+..+|.+|++........+.++|++.+|..|+||||
T Consensus 805 -------------~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 805 -------------YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTG 871 (952)
T ss_pred -------------EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCch
Confidence 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy15936 616 AEVKGVCTEAGMYALRE 632 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~ 632 (665)
+||..++..|.+.|..+
T Consensus 872 ADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 872 ADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=325.44 Aligned_cols=251 Identities=51% Similarity=0.787 Sum_probs=231.9
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
..+..+|.+++|++..++.+++.+.+|+.+++.|...|..+++++||+||||||||++|+++|..++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
+|.|+.++.++.+|..|+...|||+|+||+|++++.+.....+ ...+.+.+++..+++.....++
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~---~~~r~~~~lL~~~d~~e~~~~v------------ 379 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG---SGRRVVGQLLTELDGIEKAEGV------------ 379 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch---HHHHHHHHHHHHhcCCCccCce------------
Confidence 9999999999999999999999999999999999988543332 2268899999999998776544
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC--CCCCCCHHHHHHH
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN--LTRGINLRKIAEL 609 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~--~~~~vdl~~la~~ 609 (665)
.||+|||+|+.+|++++||||||..++|++|+.++|.+||+.++.... +..++++..++..
T Consensus 380 -----------------~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~ 442 (494)
T COG0464 380 -----------------LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEI 442 (494)
T ss_pred -----------------EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHH
Confidence 699999999999999999999999999999999999999999999655 4688999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhhcc
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRER-RVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~-~~~It~~d~~~Al~~~~~~~~ 654 (665)
++||+|+||..+|++|.+.+.++. ...++.+||.+|++.+.+...
T Consensus 443 t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 443 TEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998 788999999999999777644
No 26
>KOG0739|consensus
Probab=100.00 E-value=9.1e-35 Score=290.42 Aligned_cols=261 Identities=36% Similarity=0.570 Sum_probs=228.0
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
+-+-|+++|+++.|++..++.+++++.+|...|.+|..- -.|-+++||||||||||+.||+++|.+.+..|+.++.+|+
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 456799999999999999999999999999999999832 2345799999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
+++|.|++++.++.+|+.|+.+.|+|+||||||++++.++++.+ ...+++-.++|-+|.|....+.
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs---easRRIKTEfLVQMqGVG~d~~----------- 268 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES---EASRRIKTEFLVQMQGVGNDND----------- 268 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch---HHHHHHHHHHHHhhhccccCCC-----------
Confidence 99999999999999999999999999999999999998855433 3456667799999998754321
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAE 608 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~ 608 (665)
.+.|+++||-||.||.+++| ||+.+|++|.|+...|...|+.|+...+.. .+-|+..|++
T Consensus 269 -----------------gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 269 -----------------GVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELAR 329 (439)
T ss_pred -----------------ceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHh
Confidence 12699999999999999999 999999999999999999999999987654 4568999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCCCHHHH
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRER----------------------------------------------RVHVTQEDF 642 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~----------------------------------------------~~~It~~d~ 642 (665)
.|+||||+||.-+++.|.|...+.- ...+|+.||
T Consensus 330 kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~ 409 (439)
T KOG0739|consen 330 KTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDF 409 (439)
T ss_pred hcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHH
Confidence 9999999999999999998877651 146999999
Q ss_pred HHHHHHHhhhcchhhhchHhhh
Q psy15936 643 EMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 643 ~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
..++.+..|.....++.-.+.|
T Consensus 410 ~k~l~~tkPTvn~~Dl~k~~~F 431 (439)
T KOG0739|consen 410 LKSLSRTKPTVNEDDLLKHEKF 431 (439)
T ss_pred HHHHhhcCCCCCHHHHHHHHHH
Confidence 9999999998877766544433
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.4e-33 Score=317.51 Aligned_cols=251 Identities=42% Similarity=0.752 Sum_probs=231.5
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
..+..+|++++|.++.++++++++.. +.+++.|...|...++++||+||||||||++|+++|..++.+++.++++++..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45678999999999999999998887 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.+.+.....++.+|..++.+.|+|+||||||.++..+.....+.+....+.+.+++..++++.....+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v------------ 194 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV------------ 194 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe------------
Confidence 99999999999999999999999999999999998876655556667788899999999988655433
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
.||+|||+++.+|++++||||||..|+++.|+.++|.+|++.+++...+..++++..++..+.
T Consensus 195 -----------------~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~ 257 (495)
T TIGR01241 195 -----------------IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTP 257 (495)
T ss_pred -----------------EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCC
Confidence 699999999999999999999999999999999999999999999988888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
|||++||.++|++|+..|.+++...|+.+||..|++++...
T Consensus 258 G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 258 GFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999888899999999999998754
No 28
>KOG0737|consensus
Probab=100.00 E-value=1.4e-33 Score=291.61 Aligned_cols=246 Identities=36% Similarity=0.621 Sum_probs=221.1
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhC-CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g-~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
.++|+++||++.+++.+++.+.+|+.+|++|..-+ ..+++||||+||||||||.+|+++|.+.+..|+-++.+.+..+|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 56899999999999999999999999999997444 46789999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
.|+.++..+.+|..|....|+++||||+|++.+.| .++.|......-.+++...||+...+..+
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK~eFM~~WDGl~s~~~~r------------- 231 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMKNEFMALWDGLSSKDSER------------- 231 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHHHHHHHHhccccCCCCce-------------
Confidence 99999999999999999999999999999999887 24445455555578999999997666422
Q ss_pred hhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGA 613 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~ 613 (665)
+.|++|||+|..+|.|++| |+..+++++.|+..+|.+|++.+++...+.+++|+..+|..|+||
T Consensus 232 --------------VlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~Gy 295 (386)
T KOG0737|consen 232 --------------VLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGY 295 (386)
T ss_pred --------------EEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCC
Confidence 1699999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh----c------------------------CCCCCHHHHHHHHHHHhhh
Q psy15936 614 SGAEVKGVCTEAGMYALRE----R------------------------RVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 614 s~~dl~~l~~~A~~~A~~~----~------------------------~~~It~~d~~~Al~~~~~~ 652 (665)
||+||+.+|+.|+...+++ . ...++++||..|...+...
T Consensus 296 SGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 296 SGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred cHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 9999999999999888764 1 2578999999999976654
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.9e-33 Score=315.55 Aligned_cols=248 Identities=44% Similarity=0.783 Sum_probs=229.1
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhh
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 454 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~ 454 (665)
..+|++++|.++.++++.+.+.. +.+++.|..+|...++++||+||||||||++|+++|.+++.+++.++++++...+.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 56889999999999999998877 88999999999999999999999999999999999999999999999999988888
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 455 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 455 g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
+.....++.+|..+..+.|+|+||||+|.++..+.....+.+.+.++.+.+|+..++++....++
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V--------------- 322 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV--------------- 322 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe---------------
Confidence 88888899999999999999999999999988776666667778888999999999988655433
Q ss_pred hcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCC
Q psy15936 535 RVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGAS 614 (665)
Q Consensus 535 r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s 614 (665)
.||+|||+++.+|++++||||||+.|.|++|+.++|.+||+.+++...+..++++..+|..+.||+
T Consensus 323 --------------iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 323 --------------IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFS 388 (638)
T ss_pred --------------eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCC
Confidence 699999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 615 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 615 ~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
++||+++|++|+..|.+++...|+.+||..|++++...
T Consensus 389 gaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 389 GADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998553
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.1e-32 Score=303.38 Aligned_cols=254 Identities=27% Similarity=0.445 Sum_probs=215.0
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
++.+|+++||++..++.+++.... ....+...|+..++++||+||||||||++|+++|.+++.+++++++..+...+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 356789999999999988765432 23455678999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
.|.++..++.+|..+....|||+||||||+++..+... +.+....+.+..++..++.... .+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~~~~--~V-------------- 361 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSEKKS--PV-------------- 361 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhcCCC--ce--------------
Confidence 99999999999999999999999999999987654221 2223445667777777654311 12
Q ss_pred hhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC--CCCCHHHHHHHCC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT--RGINLRKIAELMP 611 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~--~~vdl~~la~~t~ 611 (665)
.||+|||+++.+|++++|+||||..++++.|+.++|.+||+.++.+.... .+.+++.+|..|+
T Consensus 362 ---------------~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~ 426 (489)
T CHL00195 362 ---------------FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSN 426 (489)
T ss_pred ---------------EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcC
Confidence 69999999999999999999999999999999999999999999886533 4789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc--chhhhchHhhh
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD--SEKNMSIKKLW 664 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~--~~~~~~~~~~~ 664 (665)
||||+||+++|.+|...|..+++ .++.+||..|++.+.|.. ..+.+.....|
T Consensus 427 GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~W 480 (489)
T CHL00195 427 KFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALKQFIPLAQTEKEQIEALQNW 480 (489)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCCcccCHHHHHHHHHH
Confidence 99999999999999999987664 689999999999999963 44566666667
No 31
>KOG0727|consensus
Probab=100.00 E-value=1.1e-34 Score=284.05 Aligned_cols=351 Identities=19% Similarity=0.262 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcC
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREE----LQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDID 207 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e----~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~ 207 (665)
..+++-++.+....+.+.+.++.+....++|+++.++- -+.|.......|-|-.-.+.+.++--.|+-.+-++.-+
T Consensus 38 e~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vrilstidrellkps 117 (408)
T KOG0727|consen 38 ERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPS 117 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEeehhhhhHHHcCCc
Confidence 34455666777777888899999999999999988762 22333444444555455565543333333211111111
Q ss_pred CCcccCCCCCCceeec-cccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 208 KNIDINDVTPNCRVAL-RNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKV 286 (665)
Q Consensus 208 ~~v~~~~l~pG~~Val-~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v 286 (665)
..+-.- =..++.|.+ -...-+-...|.+..-|.|+ |.+||| ++-|++|++|+|
T Consensus 118 ~svalh-rhsnalvdvlppeadssi~ml~~~ekpdvs-----------y~digg--------------ld~qkqeireav 171 (408)
T KOG0727|consen 118 ASVALH-RHSNALVDVLPPEADSSISMLGPDEKPDVS-----------YADIGG--------------LDVQKQEIREAV 171 (408)
T ss_pred cchhhh-hcccceeeccCCcccccccccCCCCCCCcc-----------cccccc--------------chhhHHHHHHHH
Confidence 111000 011111211 11122223345444556653 344555 889999999999
Q ss_pred HHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCC
Q psy15936 287 RMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN 359 (665)
Q Consensus 287 ~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 359 (665)
++|+.+.++|+..|+.||+|+ |||||||+|+++ |+.+.|+.+.+|+|.++|+|+|.+++ +.+|.+++.
T Consensus 172 elplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmv-----rdvfrlake 246 (408)
T KOG0727|consen 172 ELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMV-----RDVFRLAKE 246 (408)
T ss_pred hccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHH-----HHHHHHHhc
Confidence 999999999999999999998 999999999988 77789999999999999999999999 999999999
Q ss_pred CCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 360 ~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.+|+++|+|++|++.+.+|+...|.+++++++ ++++ |+++|+|+ ++-.-|..+|+++|+.+++
T Consensus 247 napsiifideidaiatkrfdaqtgadrevqri--l~el-lnqmdgfd--------------q~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRI--LIEL-LNQMDGFD--------------QTTNVKVIMATNRADTLDP 309 (408)
T ss_pred cCCcEEEeehhhhHhhhhccccccccHHHHHH--HHHH-HHhccCcC--------------cccceEEEEecCcccccCH
Confidence 99999999999999999999999999999998 7777 88888877 3333478889999999999
Q ss_pred ceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 440 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 440 ~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
+++|+++.|++.+++.++.+..+-+|.... ..+.+-||+| +..++..-+..++++ +
T Consensus 310 allrpgrldrkiefplpdrrqkrlvf~tit---skm~ls~~vd--------------------le~~v~rpdkis~ad-i 365 (408)
T KOG0727|consen 310 ALLRPGRLDRKIEFPLPDRRQKRLVFSTIT---SKMNLSDEVD--------------------LEDLVARPDKISGAD-I 365 (408)
T ss_pred hhcCCccccccccCCCCchhhhhhhHHhhh---hcccCCcccC--------------------HHHHhcCccccchhh-H
Confidence 999999999999999999999999998844 3578889998 788888889998887 9
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
.++|.||||.|.|++|+.+..+||++++..++-..
T Consensus 366 ~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 366 NAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred HHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999998776443
No 32
>KOG0728|consensus
Probab=100.00 E-value=1.3e-34 Score=283.13 Aligned_cols=333 Identities=23% Similarity=0.345 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCceeEEEEEEeCCCeEEEEEeC---------CCeEEEEcC
Q psy15936 141 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ----EQGSYVGEVVKPMDKKKVLVKVHP---------EGKFVVDID 207 (665)
Q Consensus 141 ~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~----~~pl~vg~v~eil~~~~~iVk~~~---------~~~~vv~v~ 207 (665)
..+.|+++...++.+..-|++|+..+++.-...- ..+- --.++.+-.+++++|.... +....+|-+
T Consensus 39 nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k-~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~d 117 (404)
T KOG0728|consen 39 NLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGK-KKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRND 117 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCc-ceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEecc
Confidence 3444455555555555555556555555332222 1221 1235566777888886544 455677777
Q ss_pred CCcccCCCCCCceeeccccceEEEeecC-CCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 208 KNIDINDVTPNCRVALRNESYTLHKILP-NKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKV 286 (665)
Q Consensus 208 ~~v~~~~l~pG~~Val~~~~~~i~~iLp-~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v 286 (665)
+..-. ++-|+--=-| -++..++.+| +.++..- +. +.|+++++|.|
T Consensus 118 sY~lh-kiLpnKvDpL--VsLMmVeKvPDStYeMiG------gL-------------------------d~QIkeIkEVI 163 (404)
T KOG0728|consen 118 SYTLH-KILPNKVDPL--VSLMMVEKVPDSTYEMIG------GL-------------------------DKQIKEIKEVI 163 (404)
T ss_pred chHHH-Hhcccccchh--hHHHhhhhCCccHHHHhc------cH-------------------------HHHHHHHHHHH
Confidence 65332 2222221111 2455666666 3333221 11 14667889999
Q ss_pred HHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCC
Q psy15936 287 RMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN 359 (665)
Q Consensus 287 ~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 359 (665)
++|-.|||+|..+|+..|+|+ |||||||+++++ |+.++|+.++++++.++|+|+|.+++ +.+|-+++.
T Consensus 164 eLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmv-----relfvmare 238 (404)
T KOG0728|consen 164 ELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMV-----RELFVMARE 238 (404)
T ss_pred hccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHH-----HHHHHHHHh
Confidence 999999999999999999998 999999999887 78899999999999999999999999 999999999
Q ss_pred CCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 360 ~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
++|+++|+|+||.+++.+.+.-+|.|+++++. ++++ |++.|+|+ ..+++ |..+|+++.+.+|+
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrt--mlel-lnqldgfe-----atkni---------kvimatnridild~ 301 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRT--MLEL-LNQLDGFE-----ATKNI---------KVIMATNRIDILDP 301 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHH--HHHH-HHhccccc-----cccce---------EEEEeccccccccH
Confidence 99999999999999999999988889998877 8887 78888777 33333 67789999999999
Q ss_pred ceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 440 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 440 ~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
+++|+++.|++.+|+.+++.++.+|+.. |+.++.+...|+ +..+...+.|.+|+. +
T Consensus 302 allrpgridrkiefp~p~e~ar~~ilki---hsrkmnl~rgi~--------------------l~kiaekm~gasgae-v 357 (404)
T KOG0728|consen 302 ALLRPGRIDRKIEFPPPNEEARLDILKI---HSRKMNLTRGIN--------------------LRKIAEKMPGASGAE-V 357 (404)
T ss_pred hhcCCCcccccccCCCCCHHHHHHHHHH---hhhhhchhcccC--------------------HHHHHHhCCCCccch-h
Confidence 9999999999999999999999999888 666777877777 788999999999988 9
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
+++|+||||||+|++|.|++++||+.|+.+|+--.
T Consensus 358 k~vcteagm~alrerrvhvtqedfemav~kvm~k~ 392 (404)
T KOG0728|consen 358 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 392 (404)
T ss_pred hhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999988776544
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=8.4e-31 Score=301.93 Aligned_cols=247 Identities=43% Similarity=0.726 Sum_probs=227.9
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhc
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g 455 (665)
..|+++.|.+..++++.+.+.+ +..+..|..++...+++++|+||||||||++|++++..++.+|+.++++++...+.+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 4677899999999999998887 677888888898889999999999999999999999999999999999999988999
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 456 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 456 ~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
.....++.+|..+....|+|+||||+|.++..+.....+.+....+.+.+++..++++.....+
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v---------------- 291 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI---------------- 291 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe----------------
Confidence 9889999999999999999999999999998886666666777788999999999998665433
Q ss_pred cccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCH
Q psy15936 536 VHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASG 615 (665)
Q Consensus 536 ~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~ 615 (665)
.||+|||+|+.+|++++||||||+.|.|+.|+.++|.+||+.++++.++..++++..+|..+.||||
T Consensus 292 -------------ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sg 358 (644)
T PRK10733 292 -------------IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSG 358 (644)
T ss_pred -------------eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
+||.++|++|+..|.++++..|+..||..|+.++...
T Consensus 359 adl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 359 ADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988664
No 34
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=3.8e-30 Score=306.92 Aligned_cols=223 Identities=17% Similarity=0.252 Sum_probs=184.3
Q ss_pred CCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhh-----------------------
Q psy15936 398 PVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI----------------------- 454 (665)
Q Consensus 398 ~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~----------------------- 454 (665)
|......+.++|..+|+||||+||||||||.||+|+|.+++.+|+.+.++++...++
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 334445667889999999999999999999999999999999999999999885431
Q ss_pred ------------------ccchH--HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCc
Q psy15936 455 ------------------GEGSR--MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 514 (665)
Q Consensus 455 ------------------g~~~~--~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~ 514 (665)
+.... .++.+|+.|++.+|||++|||||+++... ....++.+|+..+++..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 11222 26889999999999999999999987642 11124778888888764
Q ss_pred ccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHh--h
Q psy15936 515 ATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--S 592 (665)
Q Consensus 515 ~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~--l 592 (665)
+...-.++ .||||||+|+.|||||+||||||+.|.++.|+..+|.+++... .
T Consensus 1766 ~~~s~~~V--------------------------IVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t 1819 (2281)
T CHL00206 1766 ERCSTRNI--------------------------LVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT 1819 (2281)
T ss_pred ccCCCCCE--------------------------EEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh
Confidence 22111111 6999999999999999999999999999999999999998864 4
Q ss_pred ccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcch
Q psy15936 593 RKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655 (665)
Q Consensus 593 ~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~ 655 (665)
+++.+..+ +|+..+|..|.|||||||+++|++|++.|+++++..|+.++|..|+.++......
T Consensus 1820 kg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~ 1883 (2281)
T CHL00206 1820 RGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRS 1883 (2281)
T ss_pred cCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhh
Confidence 55555543 6899999999999999999999999999999999999999999999998876443
No 35
>KOG0726|consensus
Probab=99.97 E-value=1.1e-33 Score=281.75 Aligned_cols=237 Identities=22% Similarity=0.375 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
++||+.|++|++|.|++|++|||.|.+.|+.+|+|+ +||||||+|++| ++.++|+.+++|++.++|+|+|.++
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpkl 266 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKL 266 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHH
Confidence 445899999999999999999999999999999998 999999999998 5557899999999999999999999
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 424 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGt 424 (665)
+ |.+|.++...+|+++|+|+||+++..||+.-.|.++++++. ++++ |++.|+|+ ..|-
T Consensus 267 v-----RqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrt--mLEL-LNQldGFd--------------srgD 324 (440)
T KOG0726|consen 267 V-----RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRT--MLEL-LNQLDGFD--------------SRGD 324 (440)
T ss_pred H-----HHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHH--HHHH-HHhccCcc--------------ccCC
Confidence 9 99999999999999999999999999999999999999977 8887 89999888 4556
Q ss_pred hHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHH
Q psy15936 425 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504 (665)
Q Consensus 425 GKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~ 504 (665)
-|..+|++....||++++|+++.|+++.++.+++...+.||.+ |...+-+-.+++ +.
T Consensus 325 vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I---HTs~Mtl~~dVn--------------------le 381 (440)
T KOG0726|consen 325 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI---HTSRMTLAEDVN--------------------LE 381 (440)
T ss_pred eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE---eecccchhcccc--------------------HH
Confidence 6888999999999999999999999999999999999999998 666677777776 78
Q ss_pred HHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 505 ~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
.++..-+.++|++ ++++|+|||+.|+|++|+.++.+||..+...|+..-
T Consensus 382 ~li~~kddlSGAd-IkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 382 ELIMTKDDLSGAD-IKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HHhhccccccccc-HHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 8888889999998 999999999999999999999999999988776544
No 36
>KOG0730|consensus
Probab=99.97 E-value=1.7e-29 Score=276.84 Aligned_cols=242 Identities=42% Similarity=0.716 Sum_probs=220.6
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
+... .++||.......+++++++|+.++..|..+|.++|.++|+|||||||||.+++++|++.++.++.++++.+...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 3444 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcC-CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~-p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
.|+.+..++.+|+.+..+. |+++||||+|.+++++..... -..+...+++..+++......+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~v------------- 321 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKV------------- 321 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcE-------------
Confidence 9999999999999999999 999999999999998733222 3457778888888887644433
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.|+++||+|+.||++++| ||||..+.+..|+..+|.+|++.+++.+++.+++++..+|..++|
T Consensus 322 ----------------ivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 322 ----------------IVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHG 384 (693)
T ss_pred ----------------EEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccc
Confidence 699999999999999999 999999999999999999999999999999988999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcch
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~ 655 (665)
|+|+|+..+|++|.+.+.++ +.++|..|+..+.+....
T Consensus 385 yvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~psa~R 422 (693)
T KOG0730|consen 385 YVGADLAALCREASLQATRR-----TLEIFQEALMGIRPSALR 422 (693)
T ss_pred hhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCCchhhh
Confidence 99999999999999999987 888999998888775443
No 37
>KOG0729|consensus
Probab=99.97 E-value=2.3e-33 Score=276.44 Aligned_cols=231 Identities=23% Similarity=0.294 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
+++|++.++|.|+.|+.+||.|-.+|+.+|+|+ |||+|||++++| .+++.|+.+++|+++++|+|+|++++
T Consensus 182 ckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmv-- 259 (435)
T KOG0729|consen 182 CKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMV-- 259 (435)
T ss_pred hHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHH--
Confidence 788999999999999999999999999999998 999999999888 55678999999999999999999999
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT 427 (665)
+.+|++++....|++|+|+||+++..+|++-.|.+.++++. ++++ +++.|+|+ |.|.-|.
T Consensus 260 ---relf~martkkaciiffdeidaiggarfddg~ggdnevqrt--mlel-i~qldgfd--------------prgnikv 319 (435)
T KOG0729|consen 260 ---RELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRT--MLEL-INQLDGFD--------------PRGNIKV 319 (435)
T ss_pred ---HHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHH--HHHH-HHhccCCC--------------CCCCeEE
Confidence 99999999999999999999999999999988888888876 7777 77778777 7888899
Q ss_pred HHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 428 ~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
.+|+++++.|+++++|+++.+++.++..++-..+..||.+ |..++-+-.+|. +.-+.
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki---haksmsverdir--------------------~ella 376 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI---HAKSMSVERDIR--------------------FELLA 376 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE---eccccccccchh--------------------HHHHH
Confidence 9999999999999999999999999988888877788877 554443333332 22333
Q ss_pred HhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 508 ~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
+.+....|+. ++++|+||||||+|.+|...+++||..|+.+||
T Consensus 377 rlcpnstgae-irsvcteagmfairarrk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 377 RLCPNSTGAE-IRSVCTEAGMFAIRARRKVATEKDFLDAVNKVV 419 (435)
T ss_pred hhCCCCcchH-HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4444555554 999999999999999999999999999988776
No 38
>KOG0741|consensus
Probab=99.96 E-value=2e-29 Score=268.19 Aligned_cols=250 Identities=39% Similarity=0.650 Sum_probs=211.5
Q ss_pred CCCccc--cCCChHHHHHH-HHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-eEEEechhhh
Q psy15936 375 DSTYEM--VGGLDNQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELV 450 (665)
Q Consensus 375 ~~~~~~--i~G~~~~~~~l-~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~-lirv~~~dl~ 450 (665)
+-.|++ +||++.+-..+ ++++..-.--|+..+++|+...+|+|||||||||||.+||.+...|++. --.++++++.
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 344554 67888766554 6777666777899999999999999999999999999999999999743 3357999999
Q ss_pred hhhhccchHHHHHHHHHHHhc--------CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccc
Q psy15936 451 QKFIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGV 522 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~--------~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~v 522 (665)
.+|+|+++..+|.+|..|... .-.|+++||||+++..|.+..++. .-.-..+++||..+||...-.++
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNI--- 370 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNI--- 370 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcE---
Confidence 999999999999999887532 124999999999999886543321 12235689999999998765544
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC----CC
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN----LT 598 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~----~~ 598 (665)
.||+.||+++.+|.||+|||||...+++..||++.|.+|+++|.+++. ++
T Consensus 371 --------------------------LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~ 424 (744)
T KOG0741|consen 371 --------------------------LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLS 424 (744)
T ss_pred --------------------------EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCC
Confidence 699999999999999999999999999999999999999999998764 56
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHhhhcc
Q psy15936 599 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------------RVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 599 ~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~---------------~~~It~~d~~~Al~~~~~~~~ 654 (665)
.++|+.+||.+|..|||++|+.+++.|.-+|+.+. ...|+.+||..|++++.|..-
T Consensus 425 ~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 425 ADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred CCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC
Confidence 89999999999999999999999999999998762 246999999999999998653
No 39
>KOG0732|consensus
Probab=99.96 E-value=3.3e-29 Score=288.75 Aligned_cols=250 Identities=41% Similarity=0.672 Sum_probs=217.2
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-----CceEEEechh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRVSGSE 448 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-----~~lirv~~~d 448 (665)
....|+++||++..++.+++++.+||.+|+.|+.+++.+|++||++||||||||++|+++|..+. ..|+.-.+.|
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 35789999999999999999999999999999999999999999999999999999999999874 5566677888
Q ss_pred hhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchh
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGM 528 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~ 528 (665)
..++|+|+.++..+.+|+.|+++.|+|+|+||||-+++.++......+. .+...||..|+|.+....+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~---SIvSTLLaLmdGldsRgqV--------- 407 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHA---SIVSTLLALMDGLDSRGQV--------- 407 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhh---hHHHHHHHhccCCCCCCce---------
Confidence 9999999999999999999999999999999999999887544333332 3456677778888766655
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIA 607 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la 607 (665)
.||+|||+++.+||+++||||||+.+.|+.|+.++|.+|+.++..+..-. ...-+..+|
T Consensus 408 --------------------vvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la 467 (1080)
T KOG0732|consen 408 --------------------VVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLA 467 (1080)
T ss_pred --------------------EEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHH
Confidence 69999999999999999999999999999999999999999998876522 122367899
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHHhhhcch
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRER----------------RVHVTQEDFEMAVAKVMQKDSE 655 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~----------------~~~It~~d~~~Al~~~~~~~~~ 655 (665)
..+.||-|+||+.+|.+|++.++++. ...|...||..|+.+..+....
T Consensus 468 ~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 468 EETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred HhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 99999999999999999999998873 2358889999999988876544
No 40
>KOG0740|consensus
Probab=99.96 E-value=3.2e-29 Score=268.21 Aligned_cols=262 Identities=34% Similarity=0.536 Sum_probs=229.1
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
.+..+++.|++++|++..++.+.+++.+|+.++++|..+. .+.+++||+||||+|||+|++++|.+.+..|+.+..+.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3455679999999999999999999999999999999654 566899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
.++|+|..+..++.+|..|+...|+|+|+||+|+++.+|. ...+....+...+++-+.++...+.+=
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~~s~~~d---------- 289 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGKNSAPDD---------- 289 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhccccCCCCC----------
Confidence 9999999999999999999999999999999999999883 334444556777888877776433210
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCC-CCCCCHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNL-TRGINLRKIAE 608 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~-~~~vdl~~la~ 608 (665)
.+.||+|||.|+.+|.+++| ||..++++|.|+.+.|..+|+..+.+.+. ..+.|++.+++
T Consensus 290 -----------------rvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~ 350 (428)
T KOG0740|consen 290 -----------------RVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAK 350 (428)
T ss_pred -----------------eEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 12699999999999999999 99999999999999999999999987743 35578999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRER-------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~-------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
.++||+++||.++|.+|++--.+.. ...++..||..|++.+.+..+.+.+..+..|
T Consensus 351 ~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~ 419 (428)
T KOG0740|consen 351 VTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKW 419 (428)
T ss_pred HhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHH
Confidence 9999999999999999987655442 2568999999999999999999998888887
No 41
>KOG0652|consensus
Probab=99.96 E-value=7.9e-32 Score=264.98 Aligned_cols=229 Identities=17% Similarity=0.269 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
|+.|+++|.|+|.+|.+|+++|..+|+.+|+|+ |||||||+++++ .++++|+.-.++.++++|+|+|++.+
T Consensus 176 ldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLV-- 253 (424)
T KOG0652|consen 176 LDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV-- 253 (424)
T ss_pred HHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHH--
Confidence 889999999999999999999999999999998 999999999987 77889999999999999999999999
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT 427 (665)
|..|.++...+|+++|+|++|+++..+|+.-...++++++. ++++ |++.|+|. +...| |.
T Consensus 254 ---RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRT--MLEL-LNQLDGFs-----s~~~v---------Kv 313 (424)
T KOG0652|consen 254 ---RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRT--MLEL-LNQLDGFS-----SDDRV---------KV 313 (424)
T ss_pred ---HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHH--HHHH-HHhhcCCC-----Cccce---------EE
Confidence 99999999999999999999999999998877677777766 7777 66666554 44444 56
Q ss_pred HHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 428 ~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
..|+++.+.++++++|.++.+++++++.+.+..+..|+++ |+..+.+-|+++ +.+|.
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQI---HsRKMnv~~DvN--------------------feELa 370 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQI---HSRKMNVSDDVN--------------------FEELA 370 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHH---hhhhcCCCCCCC--------------------HHHHh
Confidence 6699999999999999999999999999999999999998 666788888988 89999
Q ss_pred HhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccE
Q psy15936 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549 (665)
Q Consensus 508 ~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~ 549 (665)
+..++|+|+. ++++|.||||.|+|+....++++||..+..-
T Consensus 371 RsTddFNGAQ-cKAVcVEAGMiALRr~atev~heDfmegI~e 411 (424)
T KOG0652|consen 371 RSTDDFNGAQ-CKAVCVEAGMIALRRGATEVTHEDFMEGILE 411 (424)
T ss_pred hcccccCchh-heeeehhhhHHHHhcccccccHHHHHHHHHH
Confidence 9999999988 8999999999999999999999999987543
No 42
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4e-28 Score=285.13 Aligned_cols=249 Identities=48% Similarity=0.789 Sum_probs=220.4
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~ 452 (665)
.+..+|++++|.+.+++.+++++.+|+.+++.|+.+|+.++.++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 453 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
+.+.....++.+|+.+..+.|+++||||+|.+.+.+....+..+ .+.+.+|+..++++.....+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~---~~~~~~Ll~~ld~l~~~~~v------------- 315 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE---KRVVAQLLTLMDGLKGRGRV------------- 315 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHH---HHHHHHHHHHhhccccCCCE-------------
Confidence 99998899999999999999999999999999887644333222 34556677777766443322
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.||++||+++.+|++++++|||+..+.++.|+.++|.+||+.+.+.+.+..+++++.++..++|
T Consensus 316 ----------------ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G 379 (733)
T TIGR01243 316 ----------------IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHG 379 (733)
T ss_pred ----------------EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCC
Confidence 5889999999999999999999999999999999999999999999998889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-------------------CCCCCHHHHHHHHHHHhhhc
Q psy15936 613 ASGAEVKGVCTEAGMYALRER-------------------RVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~-------------------~~~It~~d~~~Al~~~~~~~ 653 (665)
|+++|+..+|++|++.++++. ...++.+||..|++.+.+..
T Consensus 380 ~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 380 FVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 999999999999999887652 13578999999999887654
No 43
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=5.6e-25 Score=230.25 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=152.6
Q ss_pred hCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHh-----cCCeEEEEcCcc
Q psy15936 408 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARE-----HAPSIIFMDEID 482 (665)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~-----~~p~VlliDEID 482 (665)
.|+.+|.+++||||||||||++|+++|.+++.+++.+++.++.++|.|+.++.++++|..|.. ..||+|||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999875 369999999999
Q ss_pred ccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCc
Q psy15936 483 SIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP 562 (665)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~ 562 (665)
++++.+... ...-..+....+|++.+|+..... + .|+.-..+ ....+.||+|||+|+.||+
T Consensus 223 A~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~-l------~G~w~~~~----------~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 223 AGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVS-L------GGDWREKE----------EIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred hcCCCCCCC--CcchHHHHHHHHHHHHhcCCcccc-c------cccccccc----------cCCCceEEEeCCCcccCCH
Confidence 999887421 111122333468888887632100 0 00000000 0112269999999999999
Q ss_pred cccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC----CCHHHHHHHHHHHHHH
Q psy15936 563 ALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG----ASGAEVKGVCTEAGMY 628 (665)
Q Consensus 563 aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g----~s~~dl~~l~~~A~~~ 628 (665)
+|+||||||..+ ..|+.++|.+||+.+++..+++ ..|+..|+..+.| |.|+--..+..++...
T Consensus 284 ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~ 350 (413)
T PLN00020 284 PLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRK 350 (413)
T ss_pred hHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHH
Confidence 999999999864 6899999999999999998876 5788899998877 4555444444444433
No 44
>KOG0734|consensus
Probab=99.91 E-value=5.3e-26 Score=242.39 Aligned_cols=244 Identities=14% Similarity=0.184 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccC
Q psy15936 265 VAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIND 337 (665)
Q Consensus 265 ~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~ 337 (665)
.++.|+++.|++++++||.|.|++++. |++|.++|...|+|+ |||||||+|++| +++..|+...+|+|+.++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkd-P~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKD-PTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcC-cHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 456788899999999999998888655 999999999999998 999999999998 555689999999999999
Q ss_pred CCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEE
Q psy15936 338 VTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 417 (665)
Q Consensus 338 ~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vL 417 (665)
+|.|++.+ |.+|.-++..+||+|||||||+++..|-... +.-.++.|.+++. +..||.+..+|+
T Consensus 378 VGvGArRV-----RdLF~aAk~~APcIIFIDEiDavG~kR~~~~--~~y~kqTlNQLLv---------EmDGF~qNeGiI 441 (752)
T KOG0734|consen 378 VGVGARRV-----RDLFAAAKARAPCIIFIDEIDAVGGKRNPSD--QHYAKQTLNQLLV---------EMDGFKQNEGII 441 (752)
T ss_pred hcccHHHH-----HHHHHHHHhcCCeEEEEechhhhcccCCccH--HHHHHHHHHHHHH---------HhcCcCcCCceE
Confidence 99999999 9999999999999999999999999886543 2355666666554 456888999999
Q ss_pred EeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCCh
Q psy15936 418 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDS 497 (665)
Q Consensus 418 L~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~ 497 (665)
+.| |+++.+.||.+++|++++|.....+.++-+.+.+|+..... .|.+-+++|
T Consensus 442 vig---------ATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~---ki~~~~~VD--------------- 494 (752)
T KOG0734|consen 442 VIG---------ATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS---KIPLDEDVD--------------- 494 (752)
T ss_pred EEe---------ccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh---cCCcccCCC---------------
Confidence 999 99999999999999999999999999999999999998544 467777898
Q ss_pred HHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC
Q psy15936 498 EVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID 558 (665)
Q Consensus 498 ~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~ 558 (665)
+.-+.+...||+|++ +.|+++.|++.|...+...|+.++++.+..+|++.+.+..
T Consensus 495 -----~~iiARGT~GFsGAd-LaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks 549 (752)
T KOG0734|consen 495 -----PKIIARGTPGFSGAD-LANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKS 549 (752)
T ss_pred -----HhHhccCCCCCchHH-HHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccc
Confidence 667788889999998 9999999999999999999999999999999998886654
No 45
>KOG0738|consensus
Probab=99.86 E-value=1.1e-23 Score=218.04 Aligned_cols=228 Identities=13% Similarity=0.118 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCccccc
Q psy15936 264 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIN 336 (665)
Q Consensus 264 ~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~ 336 (665)
-++..|++|+||++.|+-|+|+|..|...|+.|+.+ ..|++|+ |||||||+|+|| +++.+||.++++.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 356779999999999999999999999999999988 7899987 999999999998 77789999999999999
Q ss_pred CCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceE
Q psy15936 337 DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416 (665)
Q Consensus 337 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~v 416 (665)
|-|++++++ |.+|++|+..+|+.||+||||++.+.|..+ +.++..++++.-+ |-++|+... .+...+.|
T Consensus 285 wRGeSEKlv-----RlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsEL---LvQmDG~~~-t~e~~k~V 353 (491)
T KOG0738|consen 285 WRGESEKLV-----RLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSEL---LVQMDGVQG-TLENSKVV 353 (491)
T ss_pred hccchHHHH-----HHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHH---HHHhhcccc-ccccceeE
Confidence 999999999 999999999999999999999999988654 6777888887655 445554432 12223557
Q ss_pred EEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 417 LL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
++.. |+++++.+|.+|.| +.+-.+..+.++...+..++..... ++...|+++
T Consensus 354 mVLA---------ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~---~~~~~~~~~-------------- 405 (491)
T KOG0738|consen 354 MVLA---------ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLR---SVELDDPVN-------------- 405 (491)
T ss_pred EEEe---------ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhc---cccCCCCcc--------------
Confidence 7776 99999999988866 3344445677888888889888443 566677777
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhccc
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHV 538 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v 538 (665)
+..+.+.++||+|++ |.++|.+|+|.++|+.....
T Consensus 406 ------~~~lae~~eGySGaD-I~nvCreAsm~~mRR~i~g~ 440 (491)
T KOG0738|consen 406 ------LEDLAERSEGYSGAD-ITNVCREASMMAMRRKIAGL 440 (491)
T ss_pred ------HHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHhcC
Confidence 788999999999998 99999999999999754433
No 46
>KOG0651|consensus
Probab=99.86 E-value=1.7e-24 Score=218.52 Aligned_cols=232 Identities=21% Similarity=0.290 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
++|+-.|..++++.|+.+...|++|.+.|+.+|+++ |||+|||+++++ .-+.+|+.++++.+..+|+|+++++
T Consensus 134 ~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRl 213 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARL 213 (388)
T ss_pred hCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHH
Confidence 344788999999999999999999999999999997 999999999876 4467999999999999999999999
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 424 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGt 424 (665)
+ |..|..|++..+|++|+++||+++..+++.....+..+++. ++++ +++++.|+.++ -
T Consensus 214 I-----Remf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrT--LMeL-lnqmdgfd~l~--------------r 271 (388)
T KOG0651|consen 214 I-----RDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRT--LMEL-LNQMDGFDTLH--------------R 271 (388)
T ss_pred H-----HHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHH--HHHH-HHhhccchhcc--------------c
Confidence 9 99999999999999999999999999998887788888876 6666 78889888554 3
Q ss_pred hHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHH
Q psy15936 425 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504 (665)
Q Consensus 425 GKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~ 504 (665)
-|..+|++..+.|+++++|+++.+.....+.+++..+..+++. |...+-+.-|+| ..
T Consensus 272 Vk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Ki---h~~~i~~~Geid--------------------~e 328 (388)
T KOG0651|consen 272 VKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKI---HVQPIDFHGEID--------------------DE 328 (388)
T ss_pred ccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEee---cccccccccccc--------------------HH
Confidence 3677788999999999999999999888887777765555444 444555556655 55
Q ss_pred HHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccE
Q psy15936 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549 (665)
Q Consensus 505 ~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~ 549 (665)
.++...+++++++ ++++|+|||+|++|+.+.++.++||.+++..
T Consensus 329 aivK~~d~f~gad-~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 329 AILKLVDGFNGAD-LRNVCTEAGMFAIPEERDEVLHEDFMKLVRK 372 (388)
T ss_pred HHHHHHhccChHH-HhhhcccccccccchhhHHHhHHHHHHHHHH
Confidence 6777888898888 9999999999999999999999999988754
No 47
>KOG0731|consensus
Probab=99.86 E-value=3.8e-23 Score=233.59 Aligned_cols=243 Identities=16% Similarity=0.220 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCccccc
Q psy15936 264 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIN 336 (665)
Q Consensus 264 ~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~ 336 (665)
...+.++|++|+++.|+|++|.|.++ .+|+.|+++|..+|+|+ |||||||+|+|| +++..|+.+++|+|..+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fL-KNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFL-KNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHh-cCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34578899999999999999988885 55999999999999997 999999999999 55678999999999999
Q ss_pred CCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCcc-cc-CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCc
Q psy15936 337 DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE-MV-GGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414 (665)
Q Consensus 337 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~-~i-~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~ 414 (665)
+++.|+..+ +.+|..++..+||++|+|+||+++..+.. .. +|.++.-+.+.+++. +..|+....
T Consensus 384 ~~g~~asrv-----r~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~---------emDgf~~~~ 449 (774)
T KOG0731|consen 384 FVGVGASRV-----RDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLV---------EMDGFETSK 449 (774)
T ss_pred hcccchHHH-----HHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHH---------HhcCCcCCC
Confidence 999999888 99999999999999999999999998852 23 556666555555443 344556678
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEE-EcCccccccCCcCCCC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIF-MDEIDSIGSSRIESGS 493 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~Vll-iDEID~l~~~~~~~~~ 493 (665)
+|++.+ ++++++.+|.+++|+++.|+......++...+.+||..+... +-+ .|++|
T Consensus 450 ~vi~~a---------~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~---~~~~~e~~d----------- 506 (774)
T KOG0731|consen 450 GVIVLA---------ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK---KKLDDEDVD----------- 506 (774)
T ss_pred cEEEEe---------ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc---cCCCcchhh-----------
Confidence 899988 999999999999999999999999999999999999996544 323 23333
Q ss_pred CCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 494 GGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 494 ~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
+.++...+.+++|++ +.++|.||++.|.|+.+..+...+|..+..++++..
T Consensus 507 ---------l~~~a~~t~gf~gad-l~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 507 ---------LSKLASLTPGFSGAD-LANLCNEAALLAARKGLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred ---------HHHHHhcCCCCcHHH-HHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccc
Confidence 566888899999998 999999999999999999999999999999888875
No 48
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-22 Score=223.26 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCccccc
Q psy15936 264 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIN 336 (665)
Q Consensus 264 ~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~ 336 (665)
+.++.+.|++|.++.++++.|.|++++. |..|+.+|...|+|+ |||||||+|+++ +++..|+..++|+|+.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~-p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKN-PKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhC-chhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5778899999999999999998888654 999999999999997 999999999999 55668999999999999
Q ss_pred CCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceE
Q psy15936 337 DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416 (665)
Q Consensus 337 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~v 416 (665)
++|.|++.+ |.+|.-+++.+|||+|+|+||+++..|...+||..++.++....+ |. ++.|+....+|
T Consensus 223 fVGvGAsRV-----RdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQl---Lv-----EmDGF~~~~gv 289 (596)
T COG0465 223 FVGVGASRV-----RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL---LV-----EMDGFGGNEGV 289 (596)
T ss_pred hcCCCcHHH-----HHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHH---Hh-----hhccCCCCCce
Confidence 999999998 999999999999999999999999999767777666666554444 22 34456677889
Q ss_pred EEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 417 LL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
++.+ |+++.+.+|++++|++++|+......++-+.+.+|++....+ +-+-.++|
T Consensus 290 ivia---------aTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~---~~l~~~Vd-------------- 343 (596)
T COG0465 290 IVIA---------ATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN---KPLAEDVD-------------- 343 (596)
T ss_pred EEEe---------cCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc---CCCCCcCC--------------
Confidence 9988 999999999999999999999988899989999999874444 33445666
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID 558 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~ 558 (665)
+..+.+.+.|+++++ +.++|+||++++.|.++..++..+|+.+..+|++.-.+..
T Consensus 344 ------l~~iAr~tpGfsGAd-L~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks 398 (596)
T COG0465 344 ------LKKIARGTPGFSGAD-LANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKS 398 (596)
T ss_pred ------HHHHhhhCCCcccch-HhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCC
Confidence 566889999999998 8999999999999999999999999999999988776544
No 49
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.82 E-value=9.8e-21 Score=210.20 Aligned_cols=296 Identities=12% Similarity=0.091 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHH--
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRE-----------------------------------ELQLLQ-- 174 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~-----------------------------------e~~~l~-- 174 (665)
..++..+..++..|.+.++..+.+...|+.+++++.. +...|+
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~l~~g 86 (512)
T TIGR03689 7 QATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEVFTAGRRMRVTVSPNVNAAELVPG 86 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEEEeCCceEEEEeCCCCCHHHCCCC
Confidence 4556678899999999999999999999999998832 111111
Q ss_pred ------------------hcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecCC
Q psy15936 175 ------------------EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN 236 (665)
Q Consensus 175 ------------------~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~ 236 (665)
..+. +++|.|++|+++++|+++++..+++++.+.+....++||++|.|++.+..+.+.+|+
T Consensus 87 ~~v~l~e~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 165 (512)
T TIGR03689 87 QTVRLNEALQVVEARDFETVGE-IATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPK 165 (512)
T ss_pred CEEEECCcceeeccCCCCCCCc-eEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCH
Confidence 1111 458889999999999999999999999999999999999999999999999999984
Q ss_pred CccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCC
Q psy15936 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDK 312 (665)
Q Consensus 237 ~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~ 312 (665)
. .+..+..+..|+..|++|+| ++.+++++++.|.++..+++.|...|+.+|+++ |||||
T Consensus 166 ~---~~~~l~~~~~p~v~~~dIgG--------------l~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTG 228 (512)
T TIGR03689 166 A---EVEDLVLEEVPDVTYADIGG--------------LDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCG 228 (512)
T ss_pred h---HHhcceeecCCCCCHHHcCC--------------hHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCc
Confidence 3 23445567788888888887 788899999999999999999999999999987 99999
Q ss_pred cceEEEecc-------------CCeeeeecCCcccccCCCCCceEEecccchhhhhhcCC----CCCcchhhhhhccCCC
Q psy15936 313 KKVLVKVHP-------------EGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN----KVDPLVSLMMVEKVPD 375 (665)
Q Consensus 313 kt~l~ka~~-------------~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~i~~~eid~i~~ 375 (665)
||+++++-. ...|+...++++..+|++++.+.+ +.+|..+.. ..++++|+|++|.+..
T Consensus 229 KT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~i-----r~iF~~Ar~~a~~g~p~IIfIDEiD~L~~ 303 (512)
T TIGR03689 229 KTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQI-----RLIFQRAREKASDGRPVIVFFDEMDSIFR 303 (512)
T ss_pred HHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHH-----HHHHHHHHHHhhcCCCceEEEehhhhhhc
Confidence 999987722 134666677888888888877655 677766654 3689999999999976
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhc
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g 455 (665)
.+.... ..+.-..+...+ +...| |+....++++.| +++..+.++++++|+++.+....+..
T Consensus 304 ~R~~~~--s~d~e~~il~~L---L~~LD-----gl~~~~~ViVI~---------ATN~~d~LDpALlRpGRfD~~I~~~~ 364 (512)
T TIGR03689 304 TRGSGV--SSDVETTVVPQL---LSELD-----GVESLDNVIVIG---------ASNREDMIDPAILRPGRLDVKIRIER 364 (512)
T ss_pred ccCCCc--cchHHHHHHHHH---HHHhc-----ccccCCceEEEe---------ccCChhhCCHhhcCccccceEEEeCC
Confidence 653221 112212221111 22222 334445788888 78999999999999999999999999
Q ss_pred cchHHHHHHHHHHH
Q psy15936 456 EGSRMVRELFVMAR 469 (665)
Q Consensus 456 ~~~~~~~~if~~a~ 469 (665)
++...+..||....
T Consensus 365 Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 365 PDAEAAADIFSKYL 378 (512)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 50
>KOG0743|consensus
Probab=99.79 E-value=9.6e-19 Score=186.49 Aligned_cols=209 Identities=27% Similarity=0.359 Sum_probs=156.2
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhc
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g 455 (665)
.+|+.++-..+.+++|.+-+..++...+.|.+.|....+|.|||||||||||+++.|+|+.|+..++-+...+..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 556667767788889999998889999999999999999999999999999999999999999999888776643
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCC---CCC-hHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 456 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGS---GGD-SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 456 ~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~---~~~-~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.+.. ++.++... ...+|++|.|||+-+..+..... +.+ ....-++.-||+.+||.-.+ |.++
T Consensus 273 ~n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs------cg~E----- 338 (457)
T KOG0743|consen 273 LDSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS------CGDE----- 338 (457)
T ss_pred CcHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc------CCCc-----
Confidence 2233 44444442 45589999999975432211111 111 11224578899999986332 2111
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
++||+|||+++.|||||+||||+|.+|+++.-+.++-..+++.|++.-. + ..-+..+.+..+
T Consensus 339 ----------------RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~-h~L~~eie~l~~ 400 (457)
T KOG0743|consen 339 ----------------RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-D-HRLFDEIERLIE 400 (457)
T ss_pred ----------------eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-C-cchhHHHHHHhh
Confidence 1589999999999999999999999999999999999999999987532 1 222555555544
Q ss_pred C--CCHHHHHHH
Q psy15936 612 G--ASGAEVKGV 621 (665)
Q Consensus 612 g--~s~~dl~~l 621 (665)
+ .||||+...
T Consensus 401 ~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 401 ETEVTPAQVAEE 412 (457)
T ss_pred cCccCHHHHHHH
Confidence 4 589998753
No 51
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.78 E-value=4.6e-20 Score=200.95 Aligned_cols=343 Identities=17% Similarity=0.255 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcee--E-EEEEEeCCCeEEEEEeC---------C
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYV--G-EVVKPMDKKKVLVKVHP---------E 199 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~v--g-~v~eil~~~~~iVk~~~---------~ 199 (665)
..++..++.+++.++.+...++.+...+++++++++.-=..+-..--.+ + -|+..-.+.+++|...+ |
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 107 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPN 107 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCCCC
Confidence 3456678888899988889999999999999998865321111110000 1 12332334456665333 2
Q ss_pred CeEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 200 GKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQR 279 (665)
Q Consensus 200 ~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~ 279 (665)
....++-.+..-...| |. ..-..+..+.-...|.+ +|++|+| ++.++
T Consensus 108 ~~v~~~~~~~~~~~~l-~~-------~~~~~~~~~~~~~~p~v-----------~~~digG--------------l~~~k 154 (398)
T PTZ00454 108 ASVALHRHSHAVVDIL-PP-------EADSSIQLLQMSEKPDV-----------TYSDIGG--------------LDIQK 154 (398)
T ss_pred CEEEeeccchhHHHhc-cc-------cccchhhhhcccCCCCC-----------CHHHcCC--------------HHHHH
Confidence 2222222221111111 11 11111222211122333 3555555 88999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchh
Q psy15936 280 NELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 352 (665)
Q Consensus 280 ~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~ 352 (665)
+++++.++.|+.+++.|...|+.+|+++ |||||||+++++ +.+..|+...++.+..+|++++.+.+ +.
T Consensus 155 ~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~l-----r~ 229 (398)
T PTZ00454 155 QEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMV-----RD 229 (398)
T ss_pred HHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHH-----HH
Confidence 9999999999999999999999999987 999999999887 44567888888889999999887766 88
Q ss_pred hhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHH
Q psy15936 353 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432 (665)
Q Consensus 353 l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~a 432 (665)
+|..+....|+++|+|++|.+...+++...|.+...+++. ..+ +...+ |+....++.+.| +++
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l--~~L-L~~ld-----~~~~~~~v~VI~---------aTN 292 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRIL--LEL-LNQMD-----GFDQTTNVKVIM---------ATN 292 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHH--HHH-HHHhh-----ccCCCCCEEEEE---------ecC
Confidence 8999999999999999999998888766555554444331 121 22222 333445666666 677
Q ss_pred HHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 433 ia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
..+.++++++++++.+....++.++...+..+|+......+ +-.++| +.+++..++|
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~---l~~dvd--------------------~~~la~~t~g 349 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN---LSEEVD--------------------LEDFVSRPEK 349 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC---CCcccC--------------------HHHHHHHcCC
Confidence 78899999999999998888888999999999987654322 223444 7788889999
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEE
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIat 553 (665)
+++++ +.++|.+|++.|+++++..++.+||..|+..++..
T Consensus 350 ~sgaD-I~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 350 ISAAD-IAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred CCHHH-HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 99988 99999999999999999999999999998876543
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=2.8e-17 Score=172.26 Aligned_cols=215 Identities=24% Similarity=0.306 Sum_probs=151.9
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCC---ceEEEeCCCCChHHHHHHHHHHhhC-------CceEEEe
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP---KGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVS 445 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~---~~vLL~GppGtGKT~LA~aia~~l~-------~~lirv~ 445 (665)
..+.+++|++.+++++++++.+ +.....+...|..++ .+++|+||||||||++|+++|..+. .+++.++
T Consensus 20 ~l~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 20 ILDEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 3445799999999999998877 555677777887654 3589999999999999999998752 3689999
Q ss_pred chhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccccc
Q psy15936 446 GSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTE 525 (665)
Q Consensus 446 ~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~e 525 (665)
+.++...+.|........+|..+ .++|+||||++.+...+.. .....+. ...|+..++... .++
T Consensus 99 ~~~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~--~~~~~e~---~~~L~~~me~~~--~~~------ 162 (287)
T CHL00181 99 RDDLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE--RDYGSEA---IEILLQVMENQR--DDL------ 162 (287)
T ss_pred HHHHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc--cchHHHH---HHHHHHHHhcCC--CCE------
Confidence 99998888887776666777764 4579999999988643211 1122333 344444444321 112
Q ss_pred chhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCC
Q psy15936 526 AGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG 600 (665)
Q Consensus 526 Ag~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~ 600 (665)
.||++++... .++|+|++ ||+..|.|++++.+++.+|+..++......-+
T Consensus 163 -----------------------~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~ 217 (287)
T CHL00181 163 -----------------------VVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLT 217 (287)
T ss_pred -----------------------EEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCC
Confidence 4667765321 34689998 99999999999999999999999987553322
Q ss_pred CC-HHHHHH----HC--CCC-CHHHHHHHHHHHHHHHHHh
Q psy15936 601 IN-LRKIAE----LM--PGA-SGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 601 vd-l~~la~----~t--~g~-s~~dl~~l~~~A~~~A~~~ 632 (665)
.+ ...+.. .. ..| ++++++++++.|......+
T Consensus 218 ~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r 257 (287)
T CHL00181 218 PEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANR 257 (287)
T ss_pred hhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11 222222 21 233 4899999999988776544
No 53
>KOG0742|consensus
Probab=99.76 E-value=7e-18 Score=175.78 Aligned_cols=202 Identities=27% Similarity=0.432 Sum_probs=153.3
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCC-eEEEEcCccccccCCc
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSSRI 489 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p-~VlliDEID~l~~~~~ 489 (665)
.+.+++|+|||||||||+.|+-+|...|..+-.+.+.|.. .+..+....++++|..++.... -++||||.|.+...+
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR- 459 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER- 459 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh-
Confidence 3556899999999999999999999998887777777642 3444555678899998876543 478999999998887
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCC
Q psy15936 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGR 569 (665)
Q Consensus 490 ~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gR 569 (665)
.....+...+..|+.||-.+-..+. ++ .++.+||+|..+|.++-+ |
T Consensus 460 -nktymSEaqRsaLNAlLfRTGdqSr--di-----------------------------vLvlAtNrpgdlDsAV~D--R 505 (630)
T KOG0742|consen 460 -NKTYMSEAQRSALNALLFRTGDQSR--DI-----------------------------VLVLATNRPGDLDSAVND--R 505 (630)
T ss_pred -chhhhcHHHHHHHHHHHHHhccccc--ce-----------------------------EEEeccCCccchhHHHHh--h
Confidence 3445566677778888765433321 12 578899999999999998 9
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhhccCCCC-----------------------CCCC----HHHHHHHCCCCCHHHHHHHH
Q psy15936 570 IDRKIEFPPPNEEARLDILRIHSRKMNLT-----------------------RGIN----LRKIAELMPGASGAEVKGVC 622 (665)
Q Consensus 570 fd~~I~~~~P~~eer~~Il~~~l~~~~~~-----------------------~~vd----l~~la~~t~g~s~~dl~~l~ 622 (665)
||..|+||.|..++|..++..|+.++-.. ...+ +.+.|..|+||||++|..|+
T Consensus 506 ide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLv 585 (630)
T KOG0742|consen 506 IDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLV 585 (630)
T ss_pred hhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999888653211 0111 46778899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15936 623 TEAGMYALRERRVHVTQEDFEMAVAK 648 (665)
Q Consensus 623 ~~A~~~A~~~~~~~It~~d~~~Al~~ 648 (665)
-.....++-.....++..-|.+.+..
T Consensus 586 a~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742|consen 586 ASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHH
Confidence 87666666655556776666655543
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.75 E-value=3.9e-19 Score=194.91 Aligned_cols=234 Identities=22% Similarity=0.348 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
++|++.+++++++.+..+..+++.|...|+.+++++ |||||||+++++ +....|+...++++..+|+|++.+.
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~ 264 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKL 264 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHH
Confidence 344889999999999999999999999999999987 999999999887 4456788888899999999988877
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHH-HHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~-~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppG 423 (665)
+ +.+|..+....++++|+|++|.+...+.+...|.+...+ .+.++ +...+.|. ...++.+.+
T Consensus 265 v-----r~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~L----L~~Ldg~~-----~~~~V~VI~--- 327 (438)
T PTZ00361 265 V-----RELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLEL----LNQLDGFD-----SRGDVKVIM--- 327 (438)
T ss_pred H-----HHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHH----HHHHhhhc-----ccCCeEEEE---
Confidence 6 889999999999999999999998877665544444333 33332 33333333 334555555
Q ss_pred ChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 424 tGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
|++..+.++.++++.++.+....++.++...+..||...... +-+-+++| +
T Consensus 328 ------ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k---~~l~~dvd--------------------l 378 (438)
T PTZ00361 328 ------ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK---MTLAEDVD--------------------L 378 (438)
T ss_pred ------ecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc---CCCCcCcC--------------------H
Confidence 667788899999999999999999999999999999874432 22334554 7
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEE
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIa 552 (665)
..++...+++++++ ++.+|.+||+.|+++++..|+.+||..|+.+|+.
T Consensus 379 ~~la~~t~g~sgAd-I~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 379 EEFIMAKDELSGAD-IKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HHHHHhcCCCCHHH-HHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 78888999999988 9999999999999999999999999999887754
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=7e-17 Score=169.20 Aligned_cols=212 Identities=21% Similarity=0.295 Sum_probs=152.8
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC---CceEEEeCCCCChHHHHHHHHHHhhC-------CceEEEechh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---PKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSE 448 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~---~~~vLL~GppGtGKT~LA~aia~~l~-------~~lirv~~~d 448 (665)
++++|++++++++.+.+.+ +..++.+...|+.. +.+++|+||||||||++|+++|..+. .+++.+++.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3589999999999998887 66778888888774 34899999999999999999988762 3689999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchh
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGM 528 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~ 528 (665)
+...+.|........+|..+ .++++||||++.+.+.+. ......+. ...|+..++... .++
T Consensus 101 l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~~~~~~~---~~~Ll~~le~~~--~~~--------- 161 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEA---IEILLQVMENQR--DDL--------- 161 (284)
T ss_pred HhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--ccchHHHH---HHHHHHHHhcCC--CCE---------
Confidence 88888887777777777764 447999999998854321 11122233 344445444321 112
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCC--C---CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCC-
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRI--D---ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN- 602 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~--~---~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vd- 602 (665)
+||++++.. + .++|+|++ ||+..|+||+++.+++..|++.++.+....-+.+
T Consensus 162 --------------------~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a 219 (284)
T TIGR02880 162 --------------------VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA 219 (284)
T ss_pred --------------------EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH
Confidence 467776532 2 24899999 9999999999999999999999998765331111
Q ss_pred HHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHh
Q psy15936 603 LRKIAEL-------MPGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 603 l~~la~~-------t~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
...+... ...-+++.++++++.|......+
T Consensus 220 ~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 220 EEAFADYIALRRTQPHFANARSIRNAIDRARLRQANR 256 (284)
T ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 2333333 11236899999999988776544
No 56
>KOG0735|consensus
Probab=99.75 E-value=3.6e-17 Score=180.36 Aligned_cols=214 Identities=24% Similarity=0.263 Sum_probs=170.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 485 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~ 485 (665)
+..+.++||+||+|||||.|++++++++ .+.+.+++|+.+...-.....+.+..+|..+.++.|+|+++|++|.++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 3456789999999999999999999976 367788999998877777777889999999999999999999999998
Q ss_pred cCCcCCCCCCChHHHHHHHHHHHhh-cCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccc
Q psy15936 486 SSRIESGSGGDSEVQRTMLELLNQL-DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPAL 564 (665)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~Ll~~~-d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aL 564 (665)
+... ..++.+......+..++.++ ..+... .+...||++.+....+++.|
T Consensus 508 ~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~----------------------------~~~ia~Iat~qe~qtl~~~L 558 (952)
T KOG0735|consen 508 SASS-NENGQDGVVSERLAAFLNQVIKIYLKR----------------------------NRKIAVIATGQELQTLNPLL 558 (952)
T ss_pred ccCc-ccCCcchHHHHHHHHHHHHHHHHHHcc----------------------------CcEEEEEEechhhhhcChhh
Confidence 8332 23333444455555566443 222111 11126899999999999999
Q ss_pred cCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh----cCCCCCH
Q psy15936 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE----RRVHVTQ 639 (665)
Q Consensus 565 lr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~----~~~~It~ 639 (665)
.+|++|+.++.+++|+..+|.+||+..+++.... ..-|++.++..|+||...|+..++.+|...|+.+ +...+|.
T Consensus 559 ~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltk 638 (952)
T KOG0735|consen 559 VSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTK 638 (952)
T ss_pred cCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchH
Confidence 9999999999999999999999999998765522 2234666999999999999999999999999844 2348999
Q ss_pred HHHHHHHHHHhhh
Q psy15936 640 EDFEMAVAKVMQK 652 (665)
Q Consensus 640 ~d~~~Al~~~~~~ 652 (665)
++|.++++...|.
T Consensus 639 e~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 639 ELFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHHhcChH
Confidence 9999999988773
No 57
>KOG0739|consensus
Probab=99.74 E-value=7.1e-20 Score=184.00 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCccccc
Q psy15936 264 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIN 336 (665)
Q Consensus 264 ~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~ 336 (665)
.+++.|++++||+.+++.|+|+|.+|...|++|..- ..|.+|+ ||||||..|++| +++++|+.+++|++.++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 455667778889999999999999999999999866 5677776 999999999887 67789999999999999
Q ss_pred CCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceE
Q psy15936 337 DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416 (665)
Q Consensus 337 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~v 416 (665)
|+|++++.+ ..+|++++...|+|||+|+||.+...+. .+..+..++|+.-+.. ++. ..| ....+|
T Consensus 206 WmGESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~---enEseasRRIKTEfLV---QMq---GVG-~d~~gv 270 (439)
T KOG0739|consen 206 WMGESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRS---ENESEASRRIKTEFLV---QMQ---GVG-NDNDGV 270 (439)
T ss_pred HhccHHHHH-----HHHHHHHHhcCCcEEEeehhhhhccCCC---CCchHHHHHHHHHHHH---hhh---ccc-cCCCce
Confidence 999999999 9999999999999999999999887763 4567788888765522 222 222 456789
Q ss_pred EEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 417 LL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
|+.| |+++++.|+.++.| +++..+.++.+...++...|.......|+++--.+
T Consensus 271 LVLg---------ATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d---------------- 323 (439)
T KOG0739|consen 271 LVLG---------ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQD---------------- 323 (439)
T ss_pred EEEe---------cCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhh----------------
Confidence 9999 89999999887755 44545567778888888888886666665433222
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
+.+|...++|++|++ +..++.+|-|..+|+
T Consensus 324 ------~~eL~~kTeGySGsD-isivVrDalmePvRk 353 (439)
T KOG0739|consen 324 ------FKELARKTEGYSGSD-ISIVVRDALMEPVRK 353 (439)
T ss_pred ------HHHHHhhcCCCCcCc-eEEEehhhhhhhHHH
Confidence 778899999999998 777777777776665
No 58
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=1.1e-16 Score=165.99 Aligned_cols=212 Identities=22% Similarity=0.254 Sum_probs=149.0
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC---CceEEEeCCCCChHHHHHHHHHHhh-------CCceEEEech
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---PKGVLLYGPPGTGKTLLARAVAHHT-------ECTFIRVSGS 447 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~---~~~vLL~GppGtGKT~LA~aia~~l-------~~~lirv~~~ 447 (665)
.++++|++.+|+++++.+.++... ......|... ..+++|+||||||||++|+++|..+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 457899999999999988775433 2223345543 3578999999999999999999864 2468888999
Q ss_pred hhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccch
Q psy15936 448 ELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAG 527 (665)
Q Consensus 448 dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg 527 (665)
++...+.+........+|..+ .++|+||||+|.|.... ........+..++..++..... +
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~~~~--~-------- 144 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDNRNE--F-------- 144 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc---cCCEEEEechhhhccCC------ccchHHHHHHHHHHHHhccCCC--E--------
Confidence 999889888888788888775 35799999999885311 1112234456667766654221 1
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCC-----CCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCC
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRI-----DILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN 602 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~-----~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vd 602 (665)
.+|+++... ..++|++++ ||+..|.|+.++.+++.+|++.++...+..-+.+
T Consensus 145 ---------------------~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 145 ---------------------VLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred ---------------------EEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH
Confidence 345554332 236889998 9999999999999999999999998665432212
Q ss_pred -HHHHHHH---------CCCCCHHHHHHHHHHHHHHHHHh
Q psy15936 603 -LRKIAEL---------MPGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 603 -l~~la~~---------t~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
+..++.. ...-+++.+++++..|......+
T Consensus 202 a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 202 AKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3333321 11246889999999988776544
No 59
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.73 E-value=3.8e-17 Score=150.32 Aligned_cols=131 Identities=44% Similarity=0.700 Sum_probs=109.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcC-CeEEEEcCccccccCCcCCCCC
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRIESGSG 494 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~-p~VlliDEID~l~~~~~~~~~~ 494 (665)
+||+||||||||++|+.+|+.++.+++.+++.++...+.+.....+..+|..+.... |+|++|||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998888999999999999998887 9999999999998776 223
Q ss_pred CChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEE
Q psy15936 495 GDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKI 574 (665)
Q Consensus 495 ~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I 574 (665)
........+..++..++....... ...||+|||.++.+++++++ +||+..|
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~----------------------------~~~vI~ttn~~~~i~~~l~~-~rf~~~i 128 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNS----------------------------RVIVIATTNSPDKIDPALLR-SRFDRRI 128 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSS----------------------------SEEEEEEESSGGGSCHHHHS-TTSEEEE
T ss_pred cccccccccceeeecccccccccc----------------------------cceeEEeeCChhhCCHhHHh-CCCcEEE
Confidence 444555667777777777644310 01699999999999999997 7999999
Q ss_pred EeCC
Q psy15936 575 EFPP 578 (665)
Q Consensus 575 ~~~~ 578 (665)
++|.
T Consensus 129 ~~~~ 132 (132)
T PF00004_consen 129 EFPL 132 (132)
T ss_dssp EE-S
T ss_pred EcCC
Confidence 9873
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.72 E-value=5.4e-17 Score=160.60 Aligned_cols=210 Identities=21% Similarity=0.267 Sum_probs=131.8
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
+.+.+.+++++.|+++.+..++-++.... ..-.+..++|||||||+||||||..+|++++.++...+++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~--------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAK--------KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHH--------CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHH--------hcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 45778899999999999998866664311 1123456899999999999999999999999999888775431
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
. ...+..++... ....|+|||||+++.. .++..+...++ .+.-. -+.+.+..|-...
T Consensus 88 k------~~dl~~il~~l--~~~~ILFIDEIHRlnk-----------~~qe~LlpamE---d~~id-iiiG~g~~ar~~~ 144 (233)
T PF05496_consen 88 K------AGDLAAILTNL--KEGDILFIDEIHRLNK-----------AQQEILLPAME---DGKID-IIIGKGPNARSIR 144 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHH---CSEEE-EEBSSSSS-BEEE
T ss_pred h------HHHHHHHHHhc--CCCcEEEEechhhccH-----------HHHHHHHHHhc---cCeEE-EEeccccccceee
Confidence 1 12223333332 3457999999998643 44455544444 32110 0111122221111
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCC-CHHHHHHH
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGI-NLRKIAEL 609 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~v-dl~~la~~ 609 (665)
+.-. .-.+|+||++...+.++|++ ||.....+..++.++..+|++.....+++.-+. ...+||.+
T Consensus 145 ~~l~------------~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 145 INLP------------PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARR 210 (233)
T ss_dssp EE----------------EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHC
T ss_pred ccCC------------CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh
Confidence 1111 12689999999999999999 999888999999999999999988877766332 36789999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15936 610 MPGASGAEVKGVCTEAG 626 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~ 626 (665)
+.| +|+-...+++++.
T Consensus 211 srG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 211 SRG-TPRIANRLLRRVR 226 (233)
T ss_dssp TTT-SHHHHHHHHHHHC
T ss_pred cCC-ChHHHHHHHHHHH
Confidence 998 8998888888764
No 61
>KOG0736|consensus
Probab=99.72 E-value=1.3e-16 Score=177.63 Aligned_cols=212 Identities=27% Similarity=0.461 Sum_probs=175.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 489 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~ 489 (665)
..-...+||+|+||||||+++++.|.+++.+++.++|.++........+..+..+|..++...|+|+|+-++|.+....
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~- 506 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ- 506 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC-
Confidence 4455679999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCC
Q psy15936 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGR 569 (665)
Q Consensus 490 ~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gR 569 (665)
.++.+......+..++. .+.+. |......||++|++.+.+++.+++ -
T Consensus 507 --dgged~rl~~~i~~~ls-~e~~~----------------------------~~~~~~ivv~t~~s~~~lp~~i~~--~ 553 (953)
T KOG0736|consen 507 --DGGEDARLLKVIRHLLS-NEDFK----------------------------FSCPPVIVVATTSSIEDLPADIQS--L 553 (953)
T ss_pred --CCchhHHHHHHHHHHHh-ccccc----------------------------CCCCceEEEEeccccccCCHHHHH--h
Confidence 22455555566666555 22221 111222699999999999999998 6
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh---c-------------
Q psy15936 570 IDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE---R------------- 633 (665)
Q Consensus 570 fd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~---~------------- 633 (665)
|-..|.++.|+.++|.+||++++....+..++.+..++.++.||+.+++..++..+...+..+ .
T Consensus 554 f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~ 633 (953)
T KOG0736|consen 554 FLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGE 633 (953)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccc
Confidence 767899999999999999999999999999999999999999999999999988774333222 1
Q ss_pred ----CCCCCHHHHHHHHHHHhhhcch
Q psy15936 634 ----RVHVTQEDFEMAVAKVMQKDSE 655 (665)
Q Consensus 634 ----~~~It~~d~~~Al~~~~~~~~~ 655 (665)
...++.+||.+|+.++....++
T Consensus 634 ~~~~~~~l~~edf~kals~~~~~fs~ 659 (953)
T KOG0736|consen 634 LCAAGFLLTEEDFDKALSRLQKEFSD 659 (953)
T ss_pred cccccceecHHHHHHHHHHHHHhhhh
Confidence 2579999999999998775544
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.70 E-value=1e-17 Score=183.03 Aligned_cols=345 Identities=19% Similarity=0.272 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCce--eEEEE-EEeCCCeEEEEEeCC-------Ce
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSY--VGEVV-KPMDKKKVLVKVHPE-------GK 201 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~--vg~v~-eil~~~~~iVk~~~~-------~~ 201 (665)
..+++.++.+++.+..++..++.+..+++++++.++.-=..+...--. -|.++ .--++..+++..... +.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g 93 (389)
T PRK03992 14 EEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPG 93 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCC
Confidence 456778889999999999999999999999998876522221111111 12222 222344555553331 11
Q ss_pred EEEEcCCCccc-CCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 202 FVVDIDKNIDI-NDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 280 (665)
Q Consensus 202 ~vv~v~~~v~~-~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~ 280 (665)
--|.+...... -..-|... +. ....+.+. .. |++.|++|+| ++.+++
T Consensus 94 ~~v~~~~~~~~~~~~l~~~~---~~-~~~~~~~~-----------~~---p~~~~~di~G--------------l~~~~~ 141 (389)
T PRK03992 94 ARVALNQQSLAIVEVLPSEK---DP-RVQAMEVI-----------ES---PNVTYEDIGG--------------LEEQIR 141 (389)
T ss_pred CEEEEcCcchhhhhcccccc---cc-hhheeeec-----------CC---CCCCHHHhCC--------------cHHHHH
Confidence 11222221110 00111111 00 00111111 11 3345666666 889999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchhh
Q psy15936 281 ELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYTL 353 (665)
Q Consensus 281 el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l 353 (665)
++++.+..+..+++.|+..|+.+|+++ |||||||+++++ +.+..|+....+++..+|+|++.+.+ +.+
T Consensus 142 ~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i-----~~~ 216 (389)
T PRK03992 142 EVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLV-----REL 216 (389)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHH-----HHH
Confidence 999999999999999999999999987 999999999887 34567888888999999998887766 888
Q ss_pred hhhcCCCCCcchhhhhhccCCCCCccccCCChHHH-HHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHH
Q psy15936 354 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI-KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432 (665)
Q Consensus 354 ~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~-~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~a 432 (665)
|..+....++++|+|++|.+...+.++..+.+... +.+.+++. ..+ |+....++.+.| +++
T Consensus 217 f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~----~ld-----~~~~~~~v~VI~---------aTn 278 (389)
T PRK03992 217 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA----EMD-----GFDPRGNVKIIA---------ATN 278 (389)
T ss_pred HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHH----hcc-----ccCCCCCEEEEE---------ecC
Confidence 99998899999999999999877655443333333 33333222 222 333444666666 666
Q ss_pred HHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 433 ia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
..+.++.+++++++.+....++.++...+..+|+......+ +-.+++ +..+...++|
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~---~~~~~~--------------------~~~la~~t~g 335 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN---LADDVD--------------------LEELAELTEG 335 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC---CCCcCC--------------------HHHHHHHcCC
Confidence 67888999999999888888888999999999987443221 112233 6788889999
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn 555 (665)
+++++ +..+|.+|++.|+++.+..++.+||..|+..+.....
T Consensus 336 ~sgad-l~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 336 ASGAD-LKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred CCHHH-HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 99988 9999999999999999999999999999988766554
No 63
>KOG0744|consensus
Probab=99.69 E-value=1.5e-16 Score=161.95 Aligned_cols=239 Identities=25% Similarity=0.357 Sum_probs=173.5
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCC-----CCceEEEeCCCCChHHHHHHHHHHhhC---------CceE
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIA-----QPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFI 442 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~-----~~~~vLL~GppGtGKT~LA~aia~~l~---------~~li 442 (665)
.|+.+.=....++++.......+ .|...+.. ..+-+||+||||||||+|++++|+.+. ..++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l----~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASAL----LFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHH----HHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 34554444556777766554322 34444433 346799999999999999999999873 4578
Q ss_pred EEechhhhhhhhccchHHHHHHHHHHHhcC-----CeEEEEcCccccccCCcCC-CCCCChHHHHHHHHHHHhhcCCccc
Q psy15936 443 RVSGSELVQKFIGEGSRMVRELFVMAREHA-----PSIIFMDEIDSIGSSRIES-GSGGDSEVQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 443 rv~~~dl~~~~~g~~~~~~~~if~~a~~~~-----p~VlliDEID~l~~~~~~~-~~~~~~~~~~~l~~Ll~~~d~~~~~ 516 (665)
.+++..+.++|.+++.+.+...|+...... --.++|||+++++..|... ......+..+.++.++.++|.....
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 899999999999999999999998765321 2256899999999887433 3344556778999999999988766
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC-
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM- 595 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~- 595 (665)
+++ .+++|+|-.+.+|.||.+ |-|.+.++++|+...+.+|++.++..+
T Consensus 296 ~Nv-----------------------------liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 296 PNV-----------------------------LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred CCE-----------------------------EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 554 577777999999999999 999999999999999999999877542
Q ss_pred --C----------CCCCCC-----HHHHHH-HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 596 --N----------LTRGIN-----LRKIAE-LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 596 --~----------~~~~vd-----l~~la~-~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
+ ....+. ...++. .+.|.|||-|+.+=--|.... -...+|+.++|..|+.....+
T Consensus 345 ~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~ea~~k 417 (423)
T KOG0744|consen 345 SSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLEAAKK 417 (423)
T ss_pred hcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHHHHHH
Confidence 1 101111 122222 257999999998766554322 234689999999888766554
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.67 E-value=2.4e-15 Score=161.16 Aligned_cols=233 Identities=19% Similarity=0.215 Sum_probs=159.6
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
..+.+..|+++.|.++.++.+..++... . ..-.++.+++|+||||||||++|+++|+.++..+...++..+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~-------~-~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAA-------K-KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHH-------H-hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 3566778999999999999988777531 1 1124567899999999999999999999999887776654321
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
....+..++... ..++++|||||+.+.. ..+..+..++. .+... .+..++....
T Consensus 89 ------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e---~~~~~----~~l~~~~~~~ 142 (328)
T PRK00080 89 ------KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAME---DFRLD----IMIGKGPAAR 142 (328)
T ss_pred ------ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHH---hccee----eeeccCcccc
Confidence 112223333332 3568999999997642 12222333332 21100 0000000000
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHH
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAEL 609 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~ 609 (665)
.-.+......+|++|+++..+++++++ ||+..+.|++|+.+++.+|++..+...++.-+ .-+..|+..
T Consensus 143 ---------~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~ 211 (328)
T PRK00080 143 ---------SIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARR 211 (328)
T ss_pred ---------ceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 000000112589999999999999988 99989999999999999999998877655422 237889999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 649 (665)
+.| +++.+..++..+..+|..++...|+.+++..++..+
T Consensus 212 ~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 212 SRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred cCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 987 569999999998888877766789999999998765
No 65
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.4e-16 Score=177.22 Aligned_cols=232 Identities=22% Similarity=0.367 Sum_probs=165.8
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh--------
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV-------- 450 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~-------- 450 (665)
.+..|++++++++.+.+.. ....+--.+.-++|+||||+|||+|++++|+.++..|+|+......
T Consensus 323 ~dHYGLekVKeRIlEyLAV-------~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAV-------QKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHH-------HHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4678999999999998865 1222333456788999999999999999999999999998654332
Q ss_pred -hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 451 -QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 451 -~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
..|.|.....+-+-+..+....| ++++||||+++..-.. +-..+|.+.|+.-.+..+.|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG-------DPaSALLEVLDPEQN~~F~D------------ 455 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG-------DPASALLEVLDPEQNNTFSD------------ 455 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC-------ChHHHHHhhcCHhhcCchhh------------
Confidence 23777777777777777777777 8999999998764321 22344777776655555554
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh-----ccCCCCC-CCC-
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS-----RKMNLTR-GIN- 602 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l-----~~~~~~~-~vd- 602 (665)
|+.+.+|+.+.+.+|+|+|..+.++.+|++ |+ .+|+++.++.++..+|.+.|+ +..++.. .+.
T Consensus 456 -------hYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i 525 (782)
T COG0466 456 -------HYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTI 525 (782)
T ss_pred -------ccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceee
Confidence 456778888988999999999999999999 99 599999999999999999886 3334331 111
Q ss_pred ----HHHHHH-HCC--CC--CHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHH
Q psy15936 603 ----LRKIAE-LMP--GA--SGAEVKGVCTEAGMYALRERRV---HVTQEDFEMAVA 647 (665)
Q Consensus 603 ----l~~la~-~t~--g~--s~~dl~~l~~~A~~~A~~~~~~---~It~~d~~~Al~ 647 (665)
+..|.+ +|. |- --+.|..+|+.++..-+..... .++..++.+=+-
T Consensus 526 ~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 526 TDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred cHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 223322 221 21 1267788888887765554322 466666665543
No 66
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=4.7e-15 Score=157.10 Aligned_cols=227 Identities=19% Similarity=0.251 Sum_probs=152.1
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhcc
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 456 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~ 456 (665)
+|+++.|+++.++.+..++... ...-..+.+++|+||||||||++|+++|+.++..+....+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~--------~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAA--------KMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5788999999999998877531 111234568999999999999999999999998876665443211
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhc
Q psy15936 457 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV 536 (665)
Q Consensus 457 ~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~ 536 (665)
...+...+... ..+.++||||++.+.. ..+..+..++. ..... + +. .++..+ +.
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~---~~~~~--~--v~-~~~~~~-~~--- 122 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAME---DFRLD--I--VI-GKGPSA-RS--- 122 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHh---hhhee--e--ee-ccCccc-cc---
Confidence 11122222221 3467999999997643 22233333332 22100 0 00 000000 00
Q ss_pred ccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCH
Q psy15936 537 HVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKIAELMPGASG 615 (665)
Q Consensus 537 ~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~ 615 (665)
-........+|++|+++..+++++++ ||...+.|++|+.+++.++++..+...++.- +..++.++..+.| ++
T Consensus 123 ----~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~p 195 (305)
T TIGR00635 123 ----VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TP 195 (305)
T ss_pred ----eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-Cc
Confidence 00011112588999999999999998 9988999999999999999998887654432 2236788999888 56
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy15936 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 649 (665)
+.+..++..+...|.......++.+++..++..+
T Consensus 196 R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 196 RIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8888999988777766666779999999998874
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.65 E-value=4e-15 Score=149.93 Aligned_cols=232 Identities=19% Similarity=0.238 Sum_probs=167.4
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
++.+..+++..|+++.++.+.-+++-. ...-....++||+||||.||||||.-+|++++..+-..+++-+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 466889999999999999987777653 223356679999999999999999999999999987777665421
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH-HhhcCCcccCccccccccchhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL-NQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll-~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
...+..++... ...+|+|||||+++.+. +.+++ ..|+.|.-.- +.+--..|-+
T Consensus 91 ------~gDlaaiLt~L--e~~DVLFIDEIHrl~~~---------------vEE~LYpaMEDf~lDI-~IG~gp~Ars-- 144 (332)
T COG2255 91 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPA---------------VEEVLYPAMEDFRLDI-IIGKGPAARS-- 144 (332)
T ss_pred ------hhhHHHHHhcC--CcCCeEEEehhhhcChh---------------HHHHhhhhhhheeEEE-EEccCCccce--
Confidence 11222333332 34579999999987543 23322 3344431000 0000000001
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHH
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAEL 609 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~ 609 (665)
.. .+.+...+|+||.+...+...|+. ||+....+..++.++..+|+......+++.-+ .....||.+
T Consensus 145 -----v~-----ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 145 -----IR-----LDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARR 212 (332)
T ss_pred -----Ee-----ccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence 01 111222689999999999999999 99999999999999999999999887776633 336789999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
+.| +|+-...++++..-+|.-++...|+.+-...|++.+.
T Consensus 213 SRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 213 SRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred ccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 998 8999999999999999988888899888888887653
No 68
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.3e-15 Score=165.17 Aligned_cols=222 Identities=47% Similarity=0.732 Sum_probs=195.5
Q ss_pred cCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEE
Q psy15936 397 LPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476 (665)
Q Consensus 397 l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~Vl 476 (665)
+|+.++..|...+..++.+++++||||+|||+++++++.. +..+..++++....++.+......+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678889999999999999999999999999999999999 776778889999999999999999999999999999999
Q ss_pred EEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCC
Q psy15936 477 FMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556 (665)
Q Consensus 477 liDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~ 556 (665)
++|++|.+.+.+.. .......+...+++..+++.. .. . + .+++.+|.
T Consensus 81 ~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~--~-v--------------------------~~~~~~~~ 127 (494)
T COG0464 81 FIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RG--Q-V--------------------------IVIGATNR 127 (494)
T ss_pred eechhhhcccCccc---cccchhhHHHHHHHHhccccc-CC--c-e--------------------------EEEeecCC
Confidence 99999999988755 222233455677777777765 21 1 1 57889999
Q ss_pred CCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc---
Q psy15936 557 IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--- 633 (665)
Q Consensus 557 ~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~--- 633 (665)
+..++++++++|||+..+.++.|+...+.+|++.+...+....+.+...++..+.|++++++..+|.++.+.+.++.
T Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~ 207 (494)
T COG0464 128 PDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDL 207 (494)
T ss_pred ccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999988875
Q ss_pred ---CCCCCHHHHHHHHHHHhhh
Q psy15936 634 ---RVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 634 ---~~~It~~d~~~Al~~~~~~ 652 (665)
...++.+++..+++++.+.
T Consensus 208 ~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 208 VGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred CcccccccHHHHHHHHHhcCcc
Confidence 3568999999999998764
No 69
>KOG2004|consensus
Probab=99.61 E-value=7.1e-16 Score=170.58 Aligned_cols=178 Identities=25% Similarity=0.373 Sum_probs=141.1
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh------hh-
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE------LV- 450 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d------l~- 450 (665)
-+|..|++++++++.++|.. -...|...++-+.|+||||+|||++++++|..||..|+|++-.. +.
T Consensus 410 deDHYgm~dVKeRILEfiAV-------~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAV-------GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccccchHHHHHHHHHHHHH-------HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 34678999999999998864 12335667788999999999999999999999999999976432 22
Q ss_pred --hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchh
Q psy15936 451 --QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGM 528 (665)
Q Consensus 451 --~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~ 528 (665)
..|+|.....+-+.+.......| +++|||||+++.. -+.+-..++.++|+.-.+.++.|.+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g-------~qGDPasALLElLDPEQNanFlDHY--------- 545 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG-------HQGDPASALLELLDPEQNANFLDHY--------- 545 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC-------CCCChHHHHHHhcChhhccchhhhc---------
Confidence 23778888878888888877777 8999999998732 1223345588888766666655543
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
.+-.|+.+.+.+|||+|..+.++++|+. |+ ..|+++-+..++...|.+.|+
T Consensus 546 ----------LdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 546 ----------LDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred ----------cccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 4445777777899999999999999999 99 599999999999999999887
No 70
>KOG0737|consensus
Probab=99.60 E-value=5.9e-17 Score=168.60 Aligned_cols=220 Identities=14% Similarity=0.169 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCC
Q psy15936 268 KEQNLRRLQAQRNELNAKVRMLREELQLLQEQG-SYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVT 339 (665)
Q Consensus 268 ~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~-~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~ 339 (665)
.+.+++||+..++++++.|.+|..+|+.|...+ ..+++|+ |||||||+++++ +.++.|+.+..+.+..+|.|
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 345555588999999999999999999996444 5678887 999999999998 66789999999999999999
Q ss_pred CCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEe
Q psy15936 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419 (665)
Q Consensus 340 ~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~ 419 (665)
++.+.+ .++|.++.+..|+++|+|++|..-..| -.+.++.-..++..+.. .+|+ +.......||+.
T Consensus 170 E~eKlv-----~AvFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK~eFM~---~WDG---l~s~~~~rVlVl 235 (386)
T KOG0737|consen 170 EAQKLV-----KAVFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMKNEFMA---LWDG---LSSKDSERVLVL 235 (386)
T ss_pred HHHHHH-----HHHHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHHHHHHH---Hhcc---ccCCCCceEEEE
Confidence 999998 999999999999999999999876555 24567777777766633 3443 334555579999
Q ss_pred CCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHH
Q psy15936 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 499 (665)
Q Consensus 420 GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~ 499 (665)
| |++++..++.+++|--+..++... +....++.|+........ +-++||
T Consensus 236 g---------ATNRP~DlDeAiiRR~p~rf~V~l--P~~~qR~kILkviLk~e~---~e~~vD----------------- 284 (386)
T KOG0737|consen 236 G---------ATNRPFDLDEAIIRRLPRRFHVGL--PDAEQRRKILKVILKKEK---LEDDVD----------------- 284 (386)
T ss_pred e---------CCCCCccHHHHHHHhCcceeeeCC--CchhhHHHHHHHHhcccc---cCcccC-----------------
Confidence 9 666666666555554444443333 345667888887665432 336677
Q ss_pred HHHHHHHHHhhcCCcccCccccccccchhhhhhhhhc
Q psy15936 500 QRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV 536 (665)
Q Consensus 500 ~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~ 536 (665)
+.++...++||+|++ ++.+|..|+++.+|+--.
T Consensus 285 ---~~~iA~~t~GySGSD-LkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 285 ---LDEIAQMTEGYSGSD-LKELCRLAALRPIRELLV 317 (386)
T ss_pred ---HHHHHHhcCCCcHHH-HHHHHHHHhHhHHHHHHH
Confidence 889999999999998 999999999999887544
No 71
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=1.4e-14 Score=171.39 Aligned_cols=231 Identities=24% Similarity=0.355 Sum_probs=145.4
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh--------
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV-------- 450 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~-------- 450 (665)
+++.|++++++++.+++..+. ..+...+..++|+||||||||++|+++|+.++.+++++++....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~-------~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQK-------LRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHH-------hhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 457899999999988775421 11223445799999999999999999999999999998765431
Q ss_pred -hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 451 -QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 451 -~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
..|.|.....+.+.|..+....| |++|||||++.+.. +.+....+.++++........+.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~----------- 453 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDH----------- 453 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccc-----------
Confidence 13455555556677777655555 89999999987432 11223344454432111101110
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc-----cCCCCC---CC
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR-----KMNLTR---GI 601 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~-----~~~~~~---~v 601 (665)
.....++.+...+|+|||..+.++++|++ ||+ .|+|+.|+.+++.+|++.++. ..++.. .+
T Consensus 454 --------~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~ 522 (775)
T TIGR00763 454 --------YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKI 522 (775)
T ss_pred --------cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 01112233344689999999999999999 995 799999999999999988762 222221 12
Q ss_pred ---CHHHHHH-HCCCCCHHHHH----HHHHHHHHHHHHhcC--------CCCCHHHHHHHH
Q psy15936 602 ---NLRKIAE-LMPGASGAEVK----GVCTEAGMYALRERR--------VHVTQEDFEMAV 646 (665)
Q Consensus 602 ---dl~~la~-~t~g~s~~dl~----~l~~~A~~~A~~~~~--------~~It~~d~~~Al 646 (665)
.+..++. .+..+..|+|+ .+|+.++......+. ..|+.+++.+-+
T Consensus 523 ~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~l 583 (775)
T TIGR00763 523 TDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYL 583 (775)
T ss_pred CHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhc
Confidence 2444444 23333345544 555555443332121 367777766554
No 72
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.59 E-value=2.2e-14 Score=162.58 Aligned_cols=237 Identities=22% Similarity=0.339 Sum_probs=157.9
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------C
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------E 438 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~ 438 (665)
..+...+..|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++.+.+ +
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 34566778899999999999888765422 345789999999999999999997642 3
Q ss_pred CceEEEechhh-------hhhhhccchH----------------HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCC
Q psy15936 439 CTFIRVSGSEL-------VQKFIGEGSR----------------MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGG 495 (665)
Q Consensus 439 ~~lirv~~~dl-------~~~~~g~~~~----------------~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~ 495 (665)
.+|+.++|... .....+.... .....+. ....+++|||||+.+.
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~---------- 188 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH---------- 188 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC----------
Confidence 67888887631 1011110000 0000111 2335799999999753
Q ss_pred ChHHHHHHHHHHHhhcC------CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCC
Q psy15936 496 DSEVQRTMLELLNQLDG------FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGR 569 (665)
Q Consensus 496 ~~~~~~~l~~Ll~~~d~------~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gR 569 (665)
...++.+..+++.-.- +++.+. + ++..-..+.+......++.|++||+.++.+++++++ |
T Consensus 189 -~~~q~~LL~~Le~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R 254 (531)
T TIGR02902 189 -PVQMNKLLKVLEDRKVFLDSAYYNSENP--N---------IPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--R 254 (531)
T ss_pred -HHHHHHHHHHHHhCeeeeccccccccCc--c---------cccchhhhcccCcccceEEEEEecCCcccCChHHhh--h
Confidence 4566666666653211 111000 0 000011112223334444566667889999999998 8
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15936 570 IDRKIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 648 (665)
Q Consensus 570 fd~~I~~~~P~~eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 648 (665)
+ ..+.|++++.+++.+|++..+++.++.- +..++.++.++. +++++.++++.|+..|..+++..|+.+|+.+++..
T Consensus 255 ~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 255 C-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred h-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 7 4789999999999999999998776542 222556666553 78999999999999998888889999999999863
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.58 E-value=1.6e-15 Score=164.75 Aligned_cols=339 Identities=17% Similarity=0.231 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcee---EEEEEEeCCCeEEEEEeC---------C
Q psy15936 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYV---GEVVKPMDKKKVLVKVHP---------E 199 (665)
Q Consensus 132 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~v---g~v~eil~~~~~iVk~~~---------~ 199 (665)
..++++++.+.+.+..++..++.+.+.+++++++++..=......--.+ ..++.--.+.++++.... |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 84 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPG 84 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCC
Confidence 3567788899999999999999999999999988755322111111101 112232334455554222 1
Q ss_pred CeEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 200 GKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQR 279 (665)
Q Consensus 200 ~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~ 279 (665)
....+.-.+..-...+..+....+. .+.+ . -. +.+.|++++| ++.++
T Consensus 85 ~~v~~~~~~~~~~~~l~~~~~~~~~--~~~~---~---~~-----------p~~~~~di~G--------------l~~~~ 131 (364)
T TIGR01242 85 ARVALNQQTLTIVDVLPTSKDPLVK--GMEV---E---ER-----------PNVSYEDIGG--------------LEEQI 131 (364)
T ss_pred CEEEEcCCcceEEeecccccccccc--ccee---c---cC-----------CCCCHHHhCC--------------hHHHH
Confidence 2222111111000011111100000 1111 1 11 2334556555 88999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchh
Q psy15936 280 NELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 352 (665)
Q Consensus 280 ~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~ 352 (665)
+++++.+..+..+++.|...|+.+|+++ |||+|||.++++ +.+..|+...++.+...+++.+.+.+ +.
T Consensus 132 ~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i-----~~ 206 (364)
T TIGR01242 132 REIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLV-----RE 206 (364)
T ss_pred HHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHH-----HH
Confidence 9999999999999999999999999987 999999999887 34557877778888888888776655 77
Q ss_pred hhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHH-HHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHH
Q psy15936 353 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 431 (665)
Q Consensus 353 l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~-~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~ 431 (665)
+|..+....|+++++|++|.+...+.+...+.+...+ .+.+.+. ..+ ++....++.+.+ ++
T Consensus 207 ~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~----~ld-----~~~~~~~v~vI~---------tt 268 (364)
T TIGR01242 207 IFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA----ELD-----GFDPRGNVKVIA---------AT 268 (364)
T ss_pred HHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH----Hhh-----CCCCCCCEEEEE---------ec
Confidence 8888888889999999999998776655444443333 3333222 111 233334555655 45
Q ss_pred HHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 432 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 432 aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
+..+.++.++.++++.+....++.++...+..+|...... +-+-++++ +..+...++
T Consensus 269 n~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~---~~l~~~~~--------------------~~~la~~t~ 325 (364)
T TIGR01242 269 NRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK---MKLAEDVD--------------------LEAIAKMTE 325 (364)
T ss_pred CChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc---CCCCccCC--------------------HHHHHHHcC
Confidence 5566788888888888877778888888889998875432 22223333 677888889
Q ss_pred CCcccCccccccccchhhhhhhhhcccchhhhhccccEE
Q psy15936 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550 (665)
Q Consensus 512 ~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~V 550 (665)
|+++++ +.++|.+|++.|+++++..|+.+||..|+..|
T Consensus 326 g~sg~d-l~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 326 GASGAD-LKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CCCHHH-HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999887 89999999999999999999999999987654
No 74
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=3.5e-14 Score=167.18 Aligned_cols=225 Identities=24% Similarity=0.331 Sum_probs=161.4
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCce
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 441 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~l 441 (665)
...+..++.+.|.++++.++.+.+.. ....+++|+||||||||++|+++|..+ +..+
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~ 241 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKI 241 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeE
Confidence 34456777889999999988766643 345689999999999999999999987 6778
Q ss_pred EEEechhhh--hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 442 IRVSGSELV--QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 442 irv~~~dl~--~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
+.+++..+. ..|.|..+..++.+|..+..+.+.|+||||+|.+.+.... ++++.+.++.+...+.. ..+
T Consensus 242 ~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~~-------g~i 312 (731)
T TIGR02639 242 YSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALSS-------GKL 312 (731)
T ss_pred EEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHhC-------CCe
Confidence 888888776 4678888899999999988778899999999999765421 12223344444433321 112
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
.+|++||..+ ..|+++.| ||. .|.++.|+.+++.+|++.....
T Consensus 313 -----------------------------~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 313 -----------------------------RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred -----------------------------EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 5888888643 47999999 996 7999999999999999976654
Q ss_pred C----CCC-CCCCHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHh
Q psy15936 595 M----NLT-RGINLRKIAELMPGAS-----GAEVKGVCTEAGMYALRE----RRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 595 ~----~~~-~~vdl~~la~~t~g~s-----~~dl~~l~~~A~~~A~~~----~~~~It~~d~~~Al~~~~ 650 (665)
+ ++. .+..+..++..+..|- |.-.-.++.+|+.....+ ....|+.+|+..++....
T Consensus 361 ~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 361 YEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 2 211 2223566666665543 444456777766543221 234699999999998874
No 75
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.57 E-value=7.1e-14 Score=147.18 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=138.4
Q ss_pred ccCCCCCccccCCChHHH---HHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 371 EKVPDSTYEMVGGLDNQI---KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~---~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
+.+.+..++++.|++... .-++++++ ...-.+++|||||||||||+|+.+|...+.+|..++..
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 345577788888877554 23444443 34566899999999999999999999999999998875
Q ss_pred hhhhhhhccchHHHHHHHHHHHhcC----CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccc
Q psy15936 448 ELVQKFIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVC 523 (665)
Q Consensus 448 dl~~~~~g~~~~~~~~if~~a~~~~----p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc 523 (665)
. .+.+.++.+++.++... ..|+|+|||+++... .|..+...++ .
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-----------QQD~lLp~vE---~----------- 130 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-----------QQDALLPHVE---N----------- 130 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-----------hhhhhhhhhc---C-----------
Confidence 4 34456788888875432 479999999987543 2333433332 1
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEe--CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc--cCCCC-
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMAT--NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR--KMNLT- 598 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatT--n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~--~~~~~- 598 (665)
....+|+|| |+.-.++++|++ |. ++++|.+.+.++..++++.-+. ..++.
T Consensus 131 ----------------------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~ 185 (436)
T COG2256 131 ----------------------GTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGG 185 (436)
T ss_pred ----------------------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCc
Confidence 111466666 777789999999 66 4699999999999999998432 22332
Q ss_pred -----CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhh
Q psy15936 599 -----RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-RVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 599 -----~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~-~~~It~~d~~~Al~~~~~~ 652 (665)
++.-++.++..+.| |.+.+++..-+.+.... ...++.+++.+.+.+....
T Consensus 186 ~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~ 241 (436)
T COG2256 186 QIIVLDEEALDYLVRLSNG----DARRALNLLELAALSAEPDEVLILELLEEILQRRSAR 241 (436)
T ss_pred ccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhc
Confidence 12225667777766 55555554444333221 1244577777777765543
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=1.6e-13 Score=160.21 Aligned_cols=222 Identities=26% Similarity=0.361 Sum_probs=156.2
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceEEE
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFIRV 444 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~lirv 444 (665)
...++.+.|.+.+++++.+.+.. ....++||+||||||||++|++++..+ +..++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 44566788999999988776643 245678999999999999999999864 4555665
Q ss_pred echhhh--hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccc
Q psy15936 445 SGSELV--QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGV 522 (665)
Q Consensus 445 ~~~dl~--~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~v 522 (665)
+...+. ..|.|..+..++.++..+....++|+|||||+.+.+.... ++...+..+.+..++.. ..+
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~~-------g~i--- 316 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLSS-------GKI--- 316 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHhC-------CCe---
Confidence 555444 3466777788888988887778899999999998765421 22233344444444321 112
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNL 597 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~ 597 (665)
.+|++|+.++ ..|++|.| ||. .|.++.|+.+++..|++.+...+..
T Consensus 317 --------------------------~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~ 367 (758)
T PRK11034 317 --------------------------RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_pred --------------------------EEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 6899998765 47999999 996 8999999999999999988776655
Q ss_pred CCCCCHH-----HHHHHCC-----CCCHHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHh
Q psy15936 598 TRGINLR-----KIAELMP-----GASGAEVKGVCTEAGMYAL----RERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 598 ~~~vdl~-----~la~~t~-----g~s~~dl~~l~~~A~~~A~----~~~~~~It~~d~~~Al~~~~ 650 (665)
..++++. .++..+. .+.|.....++.+|+.... ......|+.+|+.+.+.+..
T Consensus 368 ~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 368 HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred ccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 5444432 2222222 3456688889998876432 12344688899988887654
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.9e-13 Score=150.30 Aligned_cols=204 Identities=20% Similarity=0.263 Sum_probs=140.9
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+..|+++.|++..++.++.++.. + ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 4566788999999999999999887754 1 233458999999999999999999988753
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.++... ..+...++.+...+. .....|++|||+|.+.. +.
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A-- 137 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QS-- 137 (484)
T ss_pred CCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HH--
Confidence 22222211 011223344433332 23457999999997632 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
+..|+..++..... + .+|++|+.++.+.+++++ |+ ..+.|.+++.
T Consensus 138 -~NALLKtLEEPp~~--v-----------------------------iFILaTte~~kI~~TI~S--RC-q~~~f~~ls~ 182 (484)
T PRK14956 138 -FNALLKTLEEPPAH--I-----------------------------VFILATTEFHKIPETILS--RC-QDFIFKKVPL 182 (484)
T ss_pred -HHHHHHHhhcCCCc--e-----------------------------EEEeecCChhhccHHHHh--hh-heeeecCCCH
Confidence 44555555443211 1 578888889999999999 87 5789999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
++..+.++..+...++. ++..+..|+..+.| +.|+..+++..+...+ ...||.+++.+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~ 241 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRK 241 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHH
Confidence 99999999888766654 23347888888887 7888888888765432 22466655543
No 78
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.2e-13 Score=153.72 Aligned_cols=220 Identities=16% Similarity=0.211 Sum_probs=147.8
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+.+|+++.|++..++.|+.++.. -..+..+||+||+|||||++|+.+++.+++.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 3456788999999999999999887753 1334567999999999999999999988652
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.++..+ ......++.++..+.. ...+|++|||+|.|.. ..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A-- 135 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HA-- 135 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HH--
Confidence 22222211 1112234555554331 2357999999997632 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
++.|++.++..... + +||++||.+..|.+.+++ || ..+.|..++.
T Consensus 136 -~NALLKtLEEPP~~--v-----------------------------~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~ 180 (830)
T PRK07003 136 -FNAMLKTLEEPPPH--V-----------------------------KFILATTDPQKIPVTVLS--RC-LQFNLKQMPA 180 (830)
T ss_pred -HHHHHHHHHhcCCC--e-----------------------------EEEEEECChhhccchhhh--he-EEEecCCcCH
Confidence 34445544443221 1 589999999999999999 88 6899999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHhhh
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALR--------ERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~--------~~~~~It~~d~~~Al~~~~~~ 652 (665)
++..+.|+.++...++. ++..+..|+..+.| +.++..+++..+..+... .....++.+.+...++.+..+
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~~ 259 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAAG 259 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC
Confidence 99999999988766654 23337788888887 678888888777644311 111234444555555555554
Q ss_pred cchh
Q psy15936 653 DSEK 656 (665)
Q Consensus 653 ~~~~ 656 (665)
+..+
T Consensus 260 d~~~ 263 (830)
T PRK07003 260 DGPE 263 (830)
T ss_pred CHHH
Confidence 4433
No 79
>KOG0732|consensus
Probab=99.52 E-value=3e-15 Score=174.06 Aligned_cols=253 Identities=14% Similarity=0.112 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEecc--------CCeeeeecCCc
Q psy15936 265 VAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKVHP--------EGKFVVDIDKN 332 (665)
Q Consensus 265 ~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka~~--------~~~f~~~~~~~ 332 (665)
-.+-|.++|||+..+..|+|+|-.|+.+|+.|...++.+|+|+ |||||||+++++.. ...|+...+++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3445677888999999999999999999999999999999988 99999999988722 23689999999
Q ss_pred ccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC
Q psy15936 333 IDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 412 (665)
Q Consensus 333 l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~ 412 (665)
+..+|+|+..+-. +.+|+.|.+..|+|+|+|+||.+.+++... ++.....+...+ +.-+.|+..
T Consensus 340 ~lskwvgEaERql-----rllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTL--------LaLmdGlds 403 (1080)
T KOG0732|consen 340 CLSKWVGEAERQL-----RLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTL--------LALMDGLDS 403 (1080)
T ss_pred hhccccCcHHHHH-----HHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHH--------HHhccCCCC
Confidence 9999999999888 999999999999999999999998888543 233333333322 112447777
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG 492 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~ 492 (665)
...|.++| |+++.+.+++++.|+++++....++.++...+..|+.+...+.+..
T Consensus 404 RgqVvvig---------ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~----------------- 457 (1080)
T KOG0732|consen 404 RGQVVVIG---------ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPP----------------- 457 (1080)
T ss_pred CCceEEEc---------ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCC-----------------
Confidence 77899999 9999999999999999999988899999999888888854332110
Q ss_pred CCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhc----------------ccchhhhhccccEEEEEeCC
Q psy15936 493 SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV----------------HVTQEDFEMAVAKVIMATNR 556 (665)
Q Consensus 493 ~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~----------------~v~~~df~~a~~~VIatTn~ 556 (665)
-....+..+.....|+.+++ ++..|++|++.++++.-- .|.-.+|..|..++.-++.+
T Consensus 458 -----i~~~l~~~la~~t~gy~gaD-lkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 458 -----ISRELLLWLAEETSGYGGAD-LKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred -----CCHHHHHHHHHhccccchHH-HHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 11234667788889999998 999999999999986322 24456666666666666655
Q ss_pred CCCCCcccc
Q psy15936 557 IDILDPALL 565 (665)
Q Consensus 557 ~~~Ld~aLl 565 (665)
...+.+.-+
T Consensus 532 ~~~~~s~Pl 540 (1080)
T KOG0732|consen 532 SSVIFSRPL 540 (1080)
T ss_pred cccCCCCCC
Confidence 444443333
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.8e-13 Score=153.87 Aligned_cols=191 Identities=18% Similarity=0.277 Sum_probs=137.1
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+.+|+++.|++..++.|++++.. -..+..+||+||+|+|||++|+.+|+.+++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 3566788999999999999999888864 1234567999999999999999999988751
Q ss_pred --------------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 441 --------------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 441 --------------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
++.++..+ ......++++...+. ....+|++|||+|.|..
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------- 138 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------- 138 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------
Confidence 12222110 112233455554432 23457999999998633
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEe
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEF 576 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~ 576 (665)
...+.||+.++..... + .+|++|+.+..|.+.+++ |+ ..+.|
T Consensus 139 ----~AaNALLKTLEEPP~~--v-----------------------------~FILaTtep~kLlpTIrS--RC-q~f~f 180 (700)
T PRK12323 139 ----HAFNAMLKTLEEPPEH--V-----------------------------KFILATTDPQKIPVTVLS--RC-LQFNL 180 (700)
T ss_pred ----HHHHHHHHhhccCCCC--c-----------------------------eEEEEeCChHhhhhHHHH--HH-Hhccc
Confidence 2245566666553322 1 588899999999999999 87 68999
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCC-CHHHHHHHCCCCCHHHHHHHHHHHHH
Q psy15936 577 PPPNEEARLDILRIHSRKMNLTRGI-NLRKIAELMPGASGAEVKGVCTEAGM 627 (665)
Q Consensus 577 ~~P~~eer~~Il~~~l~~~~~~~~v-dl~~la~~t~g~s~~dl~~l~~~A~~ 627 (665)
..++.++..+.++.++...++..+. .+..|+..+.| +.++..+++..+..
T Consensus 181 ~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 181 KQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred CCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999999888766554332 26778888887 78898888887654
No 81
>PRK04195 replication factor C large subunit; Provisional
Probab=99.51 E-value=4e-13 Score=151.19 Aligned_cols=212 Identities=26% Similarity=0.322 Sum_probs=145.2
Q ss_pred hhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 367 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 367 ~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
+.+++...+.+++++.|.+.+++.++.++.... ...++.++||+||||||||++|+++|+.++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~---------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWL---------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 357788889999999999999999999886421 11347889999999999999999999999999999988
Q ss_pred hhhhhhhhccchHHHHHHHHHHHh------cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccc
Q psy15936 447 SELVQKFIGEGSRMVRELFVMARE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520 (665)
Q Consensus 447 ~dl~~~~~g~~~~~~~~if~~a~~------~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~ 520 (665)
++.... ..+..+...+.. ..+.+++|||+|.+... .+......+..++.. . . .
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~---~--~--~- 131 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK---A--K--Q- 131 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc---C--C--C-
Confidence 764321 112222222211 24679999999987542 122223333333331 1 0 0
Q ss_pred cccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCc-cccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-
Q psy15936 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP-ALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT- 598 (665)
Q Consensus 521 ~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~-aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~- 598 (665)
.+|+++|.+..+.+ .+++ |+ ..|.|++|+..+...+++.++...++.
T Consensus 132 ----------------------------~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i 180 (482)
T PRK04195 132 ----------------------------PIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIEC 180 (482)
T ss_pred ----------------------------CEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 37888898888877 5655 44 589999999999999999988766654
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 599 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 599 ~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
++..+..|+..+.| |++.+++.....+ .+...++.+++...
T Consensus 181 ~~eaL~~Ia~~s~G----DlR~ain~Lq~~a--~~~~~it~~~v~~~ 221 (482)
T PRK04195 181 DDEALKEIAERSGG----DLRSAINDLQAIA--EGYGKLTLEDVKTL 221 (482)
T ss_pred CHHHHHHHHHHcCC----CHHHHHHHHHHHh--cCCCCCcHHHHHHh
Confidence 22336777777654 7777766655433 34445777766543
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.5e-13 Score=150.14 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=138.4
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------- 439 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~----------- 439 (665)
+...+.+|+++.|++..++.++.++.. -..+.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 456788999999999998888877754 123456899999999999999999998864
Q ss_pred -------------ceEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 440 -------------TFIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 440 -------------~lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
.++.++++. ..+...++.+...+.. ....++++||+|.+.. . .
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~---a 133 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------E---A 133 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------H---H
Confidence 233343321 1112234444444332 2346999999997632 1 2
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
+..|+..++..++. + .+|++|+.+..+++++++ |+ ..+.|.+|+.+
T Consensus 134 ~~~LLk~LE~p~~~--v-----------------------------v~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~ 179 (472)
T PRK14962 134 FNALLKTLEEPPSH--V-----------------------------VFVLATTNLEKVPPTIIS--RC-QVIEFRNISDE 179 (472)
T ss_pred HHHHHHHHHhCCCc--E-----------------------------EEEEEeCChHhhhHHHhc--Cc-EEEEECCccHH
Confidence 34445554443221 1 466677777899999998 77 48999999999
Q ss_pred HHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 583 er~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
+...+++..+...++. .+..++.|+..+.| +.+.+.+.+..+...+ ...||.+++..++.
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~~----~~~It~e~V~~~l~ 240 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWKFS----EGKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 9999999888765443 22237788888776 5666666666544332 12488888877664
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.8e-13 Score=151.68 Aligned_cols=203 Identities=19% Similarity=0.251 Sum_probs=141.1
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|++..++.++.++.. ...+..+||+||+|+|||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 456788999999999999999888853 2345678999999999999999999988652
Q ss_pred --------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 441 --------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 441 --------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
++.+++.+. .....++.+...+. .....|++|||+|.+.. ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A--- 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HS--- 134 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HH---
Confidence 233333211 12233445544332 23457999999997633 22
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
...|+..++..... + .+|++|+.+..+++.+++ |+ ..+.|.+++.+
T Consensus 135 ~NALLKtLEEPP~~--v-----------------------------~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~e 180 (702)
T PRK14960 135 FNALLKTLEEPPEH--V-----------------------------KFLFATTDPQKLPITVIS--RC-LQFTLRPLAVD 180 (702)
T ss_pred HHHHHHHHhcCCCC--c-----------------------------EEEEEECChHhhhHHHHH--hh-heeeccCCCHH
Confidence 33444444432211 1 478888888889889887 77 58999999999
Q ss_pred HHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
+....++..+...++.- +..+..|+..+.| +.+++.+++..+..+ +...|+.+++..
T Consensus 181 EI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~ 238 (702)
T PRK14960 181 EITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKE 238 (702)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 99999999888766542 2337778888876 888888888776543 234566666544
No 84
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=8.9e-13 Score=143.15 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=141.5
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+.+|+++.|++..++.++..+.. | ..+..+||+||||+|||++|+++|+.+.+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3456788999999999999999887754 1 234567999999999999999999988642
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.++... ......++.+...+.. ....+++|||+|.+.. ..
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a-- 135 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HS-- 135 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HH--
Confidence 11111110 0122334455444321 2346999999997632 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
...|+..++..+.. + .+|++|+.++.+.+++++ |+ ..++|++|+.
T Consensus 136 -~naLLk~lEe~~~~--~-----------------------------~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~ 180 (363)
T PRK14961 136 -FNALLKTLEEPPQH--I-----------------------------KFILATTDVEKIPKTILS--RC-LQFKLKIISE 180 (363)
T ss_pred -HHHHHHHHhcCCCC--e-----------------------------EEEEEcCChHhhhHHHHh--hc-eEEeCCCCCH
Confidence 33455554443221 1 467777778889999988 77 5899999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
++..++++..++..+.. ++..+..++..+.| +++++.+++..+... +...|+.+++.+++.
T Consensus 181 ~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 181 EKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 99999999888776643 22346778888876 788888888877543 345688888776554
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=2.6e-12 Score=139.49 Aligned_cols=218 Identities=27% Similarity=0.368 Sum_probs=143.4
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC---------CceEEEechhh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSEL 449 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~---------~~lirv~~~dl 449 (665)
+.+.|.+++++.+...+.-. +. | ..+.+++++||||||||++++++++.+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~------~~--~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPI------LR--G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHH------Hc--C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 36789999999998877531 11 2 3456799999999999999999998763 46777887543
Q ss_pred hh----------hhh--c--------cchHHHHHHHHHHH-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHH
Q psy15936 450 VQ----------KFI--G--------EGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 508 (665)
Q Consensus 450 ~~----------~~~--g--------~~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~ 508 (665)
.. .+. + ........++.... ...+.|++|||+|.+.... +..+.++++
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhc
Confidence 21 110 1 01122334444333 2346789999999885211 123444443
Q ss_pred hh--cCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---CCCccccCCCCee-EEEEeCCCCHH
Q psy15936 509 QL--DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---ILDPALLRPGRID-RKIEFPPPNEE 582 (665)
Q Consensus 509 ~~--d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---~Ld~aLlr~gRfd-~~I~~~~P~~e 582 (665)
.. ..... . ...+|+++|.++ .+++.+.+ ||. ..+.|++++.+
T Consensus 155 ~~~~~~~~~-~-----------------------------~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~ 202 (365)
T TIGR02928 155 ARSNGDLDN-A-----------------------------KVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAE 202 (365)
T ss_pred cccccCCCC-C-----------------------------eEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHH
Confidence 31 11111 1 115788888775 47777777 664 57999999999
Q ss_pred HHHHHHHHhhccC---C-CCCCCCHHH---HHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 583 ARLDILRIHSRKM---N-LTRGINLRK---IAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 583 er~~Il~~~l~~~---~-~~~~vdl~~---la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
+..+|++..+... . ++++ -+.. ++..+.| ..+.+..+|+.|+..|..++...|+.+|+..|+..+.
T Consensus 203 e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 203 ELRDILENRAEKAFYDGVLDDG-VIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHHHhhccCCCCChh-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 9999999887621 1 2211 1233 3444455 4677778999999999988888999999999988774
No 86
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.49 E-value=8.6e-13 Score=145.77 Aligned_cols=203 Identities=30% Similarity=0.381 Sum_probs=140.1
Q ss_pred ccCCCCCccccCCChHHHHH---HHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 371 EKVPDSTYEMVGGLDNQIKE---IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~---l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
+.+.+.+++++.|++..+.. ++.++.. ....+++|+||||||||++|+++++.++..|+.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 45667888999999988666 6666643 2345899999999999999999999999999998876
Q ss_pred hhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccc
Q psy15936 448 ELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVC 523 (665)
Q Consensus 448 dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc 523 (665)
... ...++.++..+. .....++||||+|.+.. ..+..+...++ .. . +
T Consensus 71 ~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le---~~--~--i---- 121 (413)
T PRK13342 71 TSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVE---DG--T--I---- 121 (413)
T ss_pred ccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhh---cC--c--E----
Confidence 421 223344444442 22567999999997532 23333433332 21 0 1
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEe--CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC-----C
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMAT--NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM-----N 596 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatT--n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~-----~ 596 (665)
.+|++| |....+++++++ |+ ..+.|++|+.++...+++..+... .
T Consensus 122 -------------------------ilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 122 -------------------------TLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred -------------------------EEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 355554 445578999998 88 689999999999999999877542 2
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 597 LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 597 ~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
+++ ..+..++..+.| ..+.+.++++.+... ...|+.+++..++....
T Consensus 174 i~~-~al~~l~~~s~G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 174 LDD-EALDALARLANG-DARRALNLLELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred CCH-HHHHHHHHhCCC-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 222 225677777755 677777777776543 44688888888877643
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=152.08 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=133.3
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE-E-----
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI-R----- 443 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li-r----- 443 (665)
.+...+.+|+++.|++..++.++.++.. | .-+..+||+||||||||++|+.+|+.+++.-. .
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 3456788999999999999999888754 1 23445699999999999999999999876411 0
Q ss_pred --Eechhhh-------hhhhc---cchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 444 --VSGSELV-------QKFIG---EGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 444 --v~~~dl~-------~~~~g---~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
..|..+. ..+.+ .....++.+...+. .....|++|||++.|.. .. +..|+
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eA---qNALL 140 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SS---FNALL 140 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HH---HHHHH
Confidence 0000000 00000 11223444444332 23457999999998632 22 45555
Q ss_pred HhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHH
Q psy15936 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI 587 (665)
Q Consensus 508 ~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~I 587 (665)
+.++...+. + ++|++|+.+..|.+.+++ |+ ..+.|.+++.++....
T Consensus 141 KtLEEPP~~--v-----------------------------rFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~ 186 (944)
T PRK14949 141 KTLEEPPEH--V-----------------------------KFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQ 186 (944)
T ss_pred HHHhccCCC--e-----------------------------EEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHH
Confidence 555543222 1 577778888889999998 77 6899999999999999
Q ss_pred HHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHH
Q psy15936 588 LRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAG 626 (665)
Q Consensus 588 l~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~ 626 (665)
++..+...++.-+ ..+..|+..+.| +.|++.++|..|.
T Consensus 187 L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 187 LNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9988876544322 236778888877 7899999998776
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=99.48 E-value=2e-12 Score=138.07 Aligned_cols=187 Identities=20% Similarity=0.235 Sum_probs=127.5
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-----CceEE
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIR 443 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-----~~lir 443 (665)
+++...+.+++++.|.++.++.++.++.. ....++||+||||||||++|+++|+.+. ..++.
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 56788899999999999999988876643 2334699999999999999999999873 23555
Q ss_pred EechhhhhhhhccchHHHHHHHHHH-H------hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCccc
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMA-R------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a-~------~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~ 516 (665)
++.++... ...++...... . ...+.++++||+|.+.. ..++.+...++ .++..
T Consensus 70 ln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE---~~~~~ 129 (319)
T PLN03025 70 LNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTME---IYSNT 129 (319)
T ss_pred eccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHh---cccCC
Confidence 66554211 11223222211 1 12357999999997632 33444544443 22211
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~ 596 (665)
. .+|.+||.+..+.+++++ |+ ..+.|++|+.++....++..++..+
T Consensus 130 t-------------------------------~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 130 T-------------------------------RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred c-------------------------------eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcC
Confidence 1 478888888899999998 76 4799999999999999998887665
Q ss_pred CC-CCCCHHHHHHHCCCCCHHHHHHHHH
Q psy15936 597 LT-RGINLRKIAELMPGASGAEVKGVCT 623 (665)
Q Consensus 597 ~~-~~vdl~~la~~t~g~s~~dl~~l~~ 623 (665)
+. .+..+..++..+.| ..+.+.+.++
T Consensus 176 i~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 176 VPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 44 22347777777665 4455555555
No 89
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.47 E-value=1.3e-12 Score=146.01 Aligned_cols=191 Identities=19% Similarity=0.297 Sum_probs=131.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
..+++||||||+|||+|++++++.+ +..++++++.++...+..........-|.... ..+++++|||++.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 3579999999999999999999987 45688888888766543332211112232222 24679999999976443
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCC---CCccc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI---LDPAL 564 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~---Ld~aL 564 (665)
. ..+..+..+++.+.... . ..||+++..|.. +++.+
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~-~-------------------------------~iiits~~~p~~l~~l~~~l 265 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAG-K-------------------------------QIVLTSDRPPKELPGLEERL 265 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCC-C-------------------------------cEEEECCCCHHHHHHHHHHH
Confidence 2 23344444444332110 0 024444445544 67888
Q ss_pred cCCCCee--EEEEeCCCCHHHHHHHHHHhhccCCC--CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q psy15936 565 LRPGRID--RKIEFPPPNEEARLDILRIHSRKMNL--TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQE 640 (665)
Q Consensus 565 lr~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~~--~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 640 (665)
++ ||. ..++|.+|+.++|.+|++..+...++ +++ -++.||..+.| +.+.+..++.....+|...+ ..||.+
T Consensus 266 ~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~ 340 (450)
T PRK00149 266 RS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLE 340 (450)
T ss_pred Hh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHH
Confidence 88 885 48999999999999999999876543 333 37888888876 78999999998877776554 468999
Q ss_pred HHHHHHHHHh
Q psy15936 641 DFEMAVAKVM 650 (665)
Q Consensus 641 d~~~Al~~~~ 650 (665)
.+.+++..+.
T Consensus 341 ~~~~~l~~~~ 350 (450)
T PRK00149 341 LAKEALKDLL 350 (450)
T ss_pred HHHHHHHHhh
Confidence 9999998774
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=2.6e-12 Score=141.69 Aligned_cols=192 Identities=20% Similarity=0.307 Sum_probs=129.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
..+++||||+|+|||+|++++++.+ +..++++++.++...+..........-|.... ..+++++|||++.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4579999999999999999999876 56788888887765543221110111122211 23579999999976543
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-CCCCC---CCcc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT-NRIDI---LDPA 563 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT-n~~~~---Ld~a 563 (665)
. ..+..+..+++.+.... . .+|.|+ ..|.. +++.
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~-~--------------------------------~iiits~~~p~~l~~l~~~ 252 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENG-K--------------------------------QIVLTSDRPPKELPGLEER 252 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCC-C--------------------------------CEEEecCCCHHHHhhhhhh
Confidence 2 23344444444332110 0 244444 44543 5678
Q ss_pred ccCCCCeeE--EEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q psy15936 564 LLRPGRIDR--KIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQE 640 (665)
Q Consensus 564 Llr~gRfd~--~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~ 640 (665)
+++ ||.. .+.|++|+.++|..|++..+...++. ++..++.||....+ +.+++..+++....+|...+ ..||.+
T Consensus 253 l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~ 328 (405)
T TIGR00362 253 LRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLE 328 (405)
T ss_pred hhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHH
Confidence 887 8864 89999999999999999998876554 23337888988876 78999999988877775544 468888
Q ss_pred HHHHHHHHHhh
Q psy15936 641 DFEMAVAKVMQ 651 (665)
Q Consensus 641 d~~~Al~~~~~ 651 (665)
.+.+++.....
T Consensus 329 ~~~~~L~~~~~ 339 (405)
T TIGR00362 329 LAKEALKDLLR 339 (405)
T ss_pred HHHHHHHHhcc
Confidence 88888877643
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.7e-12 Score=148.21 Aligned_cols=190 Identities=20% Similarity=0.269 Sum_probs=133.4
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|++..++.++..+.. | .-+..+||+||+|+|||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 345678999999999999999887754 1 234457999999999999999999988763
Q ss_pred --------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 441 --------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 441 --------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
++.++..+ ......++.+...+. .....|++|||+|.+.. ..
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a--- 135 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HS--- 135 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HH---
Confidence 22222211 011223444444332 23457999999998643 23
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
++.|++.++...+. + ++|++|+.+..+.+.+++ |+ ..+.|.+++.+
T Consensus 136 ~NALLKtLEEPp~~--v-----------------------------~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ 181 (647)
T PRK07994 136 FNALLKTLEEPPEH--V-----------------------------KFLLATTDPQKLPVTILS--RC-LQFHLKALDVE 181 (647)
T ss_pred HHHHHHHHHcCCCC--e-----------------------------EEEEecCCccccchHHHh--hh-eEeeCCCCCHH
Confidence 44455554443222 1 577778888899999998 86 78999999999
Q ss_pred HHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGM 627 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~ 627 (665)
+....++..+...++..+ ..+..|+..+.| +.++...++..|..
T Consensus 182 ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 182 QIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999999988876554422 336778888887 78888888877653
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=6.2e-13 Score=149.60 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=141.6
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+.+|+++.|++..++.++.++.. -..+..+||+||+|||||++|+.+|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 4566788999999999999999988854 1334568999999999999999999988652
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.++..+ ......++.+...+. ....+|++|||+|.+.. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a-- 135 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HS-- 135 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HH--
Confidence 33333321 112223455554432 22357999999998643 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
++.|+..++..... + .+|++|+.+..+.+.+++ |+ ..++|.+++.
T Consensus 136 -~naLLk~LEepp~~--~-----------------------------~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~ 180 (509)
T PRK14958 136 -FNALLKTLEEPPSH--V-----------------------------KFILATTDHHKLPVTVLS--RC-LQFHLAQLPP 180 (509)
T ss_pred -HHHHHHHHhccCCC--e-----------------------------EEEEEECChHhchHHHHH--Hh-hhhhcCCCCH
Confidence 44455555443221 1 477778888889888988 76 5788999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
++....++..+...++. ++..+..++..+.| +.+++.+++..+..+ +...||.+++...
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 99988888888776654 22336778888876 889999999877543 2334555555443
No 93
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=2.9e-12 Score=137.47 Aligned_cols=213 Identities=20% Similarity=0.271 Sum_probs=137.2
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-----CceE
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFI 442 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-----~~li 442 (665)
.|.+...+..|+++.|.+..++.+..++.. ....+++|+||||||||++|+++++.+. ..++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 356777888899999999999998887753 1233799999999999999999999874 3467
Q ss_pred EEechhhhhhh-------------hcc-------chHHHHHHHHHHHh-----cCCeEEEEcCccccccCCcCCCCCCCh
Q psy15936 443 RVSGSELVQKF-------------IGE-------GSRMVRELFVMARE-----HAPSIIFMDEIDSIGSSRIESGSGGDS 497 (665)
Q Consensus 443 rv~~~dl~~~~-------------~g~-------~~~~~~~if~~a~~-----~~p~VlliDEID~l~~~~~~~~~~~~~ 497 (665)
.+++.++.... .+. ....++.+...... ..+.++++||++.+..
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----------- 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----------- 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------
Confidence 77776643211 000 01122233222222 2346999999996522
Q ss_pred HHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeC
Q psy15936 498 EVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFP 577 (665)
Q Consensus 498 ~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~ 577 (665)
..+..+..+++.. .... .+|++++.+..+.+.+.+ |+ ..+.|+
T Consensus 140 ~~~~~L~~~le~~---~~~~-------------------------------~~Il~~~~~~~~~~~L~s--r~-~~v~~~ 182 (337)
T PRK12402 140 DAQQALRRIMEQY---SRTC-------------------------------RFIIATRQPSKLIPPIRS--RC-LPLFFR 182 (337)
T ss_pred HHHHHHHHHHHhc---cCCC-------------------------------eEEEEeCChhhCchhhcC--Cc-eEEEec
Confidence 3334444444332 1111 466677667777788887 65 579999
Q ss_pred CCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 578 PPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 578 ~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
+|+.++...+++..+...++. .+..++.++..+.| +.+. +++.....+. ....||.+++.+++.
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-dlr~---l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 183 APTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-DLRK---AILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH---HHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 999999999999988776654 23346777777744 4444 4444433332 223688888776554
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.7e-12 Score=145.25 Aligned_cols=215 Identities=19% Similarity=0.250 Sum_probs=145.6
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR------ 443 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir------ 443 (665)
.....+.+|+++.|++..++.++..+.. -..+.++||+||||||||++|+.+|+.+++.-..
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 4566788999999999999998876643 2345689999999999999999999988653210
Q ss_pred ------Eechhhhhh-------h---hccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 444 ------VSGSELVQK-------F---IGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 444 ------v~~~dl~~~-------~---~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
..|..+... + .......++.++..+.. ....|++|||++.+.. . .+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~---a~ 145 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------G---AF 145 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------H---HH
Confidence 011111100 0 11123445666665542 2356999999997632 2 24
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHH
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 583 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ee 583 (665)
..|+..++..... + .+|++|+.+..+++.+++ |+ ..+.|.+++.++
T Consensus 146 naLLk~LEepp~~--~-----------------------------vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~e 191 (507)
T PRK06645 146 NALLKTLEEPPPH--I-----------------------------IFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEE 191 (507)
T ss_pred HHHHHHHhhcCCC--E-----------------------------EEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHH
Confidence 4455544432211 1 477778888889999988 77 579999999999
Q ss_pred HHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 584 RLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 584 r~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
...+++..++..++.-+ ..+..|+..+.| +.+++.+++..+..++... ...||.+++.+.+
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 99999999987665422 337788888877 8899999998887654321 2246666665443
No 95
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4e-13 Score=153.96 Aligned_cols=224 Identities=24% Similarity=0.341 Sum_probs=145.3
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCC----ceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP----KGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSEL 449 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~----~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl 449 (665)
.-..+.|+++++..+-++|.. .+.|+..+ .++||.||+|+|||.||+++|..+. .+++|++++++
T Consensus 489 L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy 560 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY 560 (786)
T ss_pred HhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH
Confidence 345689999999999998875 45565433 4788999999999999999999996 89999999998
Q ss_pred hhh------------hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh---hcCCc
Q psy15936 450 VQK------------FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ---LDGFE 514 (665)
Q Consensus 450 ~~~------------~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~---~d~~~ 514 (665)
+.+ |+|..+. ..+.+..++++.+|+++|||++ +|+++.+.+.++++. .|+..
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEK-----------AHpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEK-----------AHPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhh-----------cCHHHHHHHHHHhcCCeeecCCC
Confidence 765 4555553 4666777778899999999997 788999999999864 33332
Q ss_pred c----cCccccccccchhhhhhhhhcc---cchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHH
Q psy15936 515 A----TKNIKGVCTEAGMYALRERRVH---VTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI 587 (665)
Q Consensus 515 ~----~~~i~~vc~eAg~~air~~r~~---v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~I 587 (665)
. .+.+..+.+++|...+...... ...+.....+.. .-...+.|+|+. |+|.+|.|.+.+.+...+|
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~-----~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~I 700 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME-----ELKKHFRPEFLN--RIDEIIPFNPLSKEVLERI 700 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH-----HHHhhCCHHHHh--hcccEEeccCCCHHHHHHH
Confidence 2 2222222233333222221000 000000000000 000124678888 9999999999999999999
Q ss_pred HHHhhccC-------CCCCCC---CHHHHHHHCC--CCCHHHHHHHHHHHHHH
Q psy15936 588 LRIHSRKM-------NLTRGI---NLRKIAELMP--GASGAEVKGVCTEAGMY 628 (665)
Q Consensus 588 l~~~l~~~-------~~~~~v---dl~~la~~t~--g~s~~dl~~l~~~A~~~ 628 (665)
+...+..+ ++.-.+ -.+.|+.... .|-.|-++.+++.-...
T Consensus 701 v~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~ 753 (786)
T COG0542 701 VDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIED 753 (786)
T ss_pred HHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHH
Confidence 99877543 222111 1455665543 35566777766655443
No 96
>KOG0989|consensus
Probab=99.44 E-value=1.9e-12 Score=132.05 Aligned_cols=220 Identities=22% Similarity=0.273 Sum_probs=146.9
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCce------E
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF------I 442 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l------i 442 (665)
+.+...+.+++++.|++.+++.++..+.. ....++|||||||||||+.|+++|.++.++= .
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 56677889999999999999999887743 3455799999999999999999999987632 2
Q ss_pred EEechhhhhhhhccchHHHHHHHHHHHh---------cC-CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 443 RVSGSELVQKFIGEGSRMVRELFVMARE---------HA-PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 443 rv~~~dl~~~~~g~~~~~~~~if~~a~~---------~~-p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
..+.++-.+.-+.. . ...-|..... .. +.|+++||.|.+.. .+...|.+.++.
T Consensus 93 ~lnaSderGisvvr--~-Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~ 155 (346)
T KOG0989|consen 93 ELNASDERGISVVR--E-KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMED 155 (346)
T ss_pred hhcccccccccchh--h-hhcCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhc
Confidence 22333322111110 0 0111221111 12 27999999997532 335556666666
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
++... ++|..||..+.+...+.+ |+ ..+.|++...+.....|+.++
T Consensus 156 ~s~~t-------------------------------rFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 156 FSRTT-------------------------------RFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred cccce-------------------------------EEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHH
Confidence 65433 689999999999999998 88 488899999999999999998
Q ss_pred ccCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 593 RKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMY--------ALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 593 ~~~~~~~~vd-l~~la~~t~g~s~~dl~~l~~~A~~~--------A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
...++.-+.+ +..|+..++| +-|+....++.+... ....-...|..+-+..-++..+..+
T Consensus 202 ~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d 270 (346)
T KOG0989|consen 202 SKEGVDIDDDALKLIAKISDG-DLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSAD 270 (346)
T ss_pred HHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccC
Confidence 8877763333 6778888777 556666666665541 1111123555666666665555443
No 97
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=9.7e-12 Score=136.52 Aligned_cols=222 Identities=25% Similarity=0.337 Sum_probs=144.4
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhh---
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELV--- 450 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~--- 450 (665)
+.+.|-+++.+++...+.- ......+.+++++||||+|||++++.+++.+ +..+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~---------~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRP---------ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHH---------HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 3567888898888777643 1112345679999999999999999999877 4668888875431
Q ss_pred -------hhhhc--------cchHHHHHHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCc
Q psy15936 451 -------QKFIG--------EGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 514 (665)
Q Consensus 451 -------~~~~g--------~~~~~~~~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~ 514 (665)
..+.+ ........+...... ..+.+++|||+|.+.... ....+..+++..+...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC
Confidence 11111 011222333333222 345799999999875211 0123555555444332
Q ss_pred ccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---CCCccccCCCCee-EEEEeCCCCHHHHHHHHHH
Q psy15936 515 ATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---ILDPALLRPGRID-RKIEFPPPNEEARLDILRI 590 (665)
Q Consensus 515 ~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---~Ld~aLlr~gRfd-~~I~~~~P~~eer~~Il~~ 590 (665)
+. .+ .+|+++|..+ .+++.+.+ ||. ..|.|++++.++..+|++.
T Consensus 171 ~~-~v-----------------------------~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~ 218 (394)
T PRK00411 171 GA-RI-----------------------------GVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKD 218 (394)
T ss_pred CC-eE-----------------------------EEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHH
Confidence 21 11 4777777653 46677665 553 4789999999999999998
Q ss_pred hhccCC---CCCCCCHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 591 HSRKMN---LTRGINLRKIAELMPGA--SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 591 ~l~~~~---~~~~vdl~~la~~t~g~--s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
++..-. .-.+..++.+++.+.+. ..+.+..+|..|+..|..++...|+.+|+..|+..+..
T Consensus 219 r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 219 RVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 875321 11222356666666331 34666788999999998888889999999999998743
No 98
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=3.2e-12 Score=144.21 Aligned_cols=192 Identities=22% Similarity=0.322 Sum_probs=134.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSR 488 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~ 488 (665)
..++|||++|+|||+|+.++++.+ +..++++.+.++...+...........|.... ..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 459999999999999999999976 46788999888776654332222222343322 346899999999775432
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC----CCCCccc
Q psy15936 489 IESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI----DILDPAL 564 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~----~~Ld~aL 564 (665)
..+..+..+++.+.... . .||.|+|.+ ..+++.|
T Consensus 394 ---------~tqeeLF~l~N~l~e~g-k--------------------------------~IIITSd~~P~eL~~l~~rL 431 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNAN-K--------------------------------QIVLSSDRPPKQLVTLEDRL 431 (617)
T ss_pred ---------HHHHHHHHHHHHHHhcC-C--------------------------------CEEEecCCChHhhhhccHHH
Confidence 33444555555443211 0 256666653 3577889
Q ss_pred cCCCCeeE--EEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q psy15936 565 LRPGRIDR--KIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 641 (665)
Q Consensus 565 lr~gRfd~--~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d 641 (665)
++ ||.+ .+.+..|+.+.|.+||+..+...++.-+ .-++.|+....+ +.+.|..++.....+|...+ ..||.+.
T Consensus 432 ~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~l 507 (617)
T PRK14086 432 RN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGL 507 (617)
T ss_pred Hh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHH
Confidence 88 7755 8899999999999999998887665422 227788888775 78999998888776665544 4688888
Q ss_pred HHHHHHHHhhh
Q psy15936 642 FEMAVAKVMQK 652 (665)
Q Consensus 642 ~~~Al~~~~~~ 652 (665)
+...++.+...
T Consensus 508 a~~vL~~~~~~ 518 (617)
T PRK14086 508 TEIVLRDLIPE 518 (617)
T ss_pred HHHHHHHhhcc
Confidence 88888776553
No 99
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.42 E-value=2e-12 Score=152.08 Aligned_cols=231 Identities=19% Similarity=0.327 Sum_probs=143.3
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-------
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ------- 451 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~------- 451 (665)
.++.|++++++++.+++... ...+-..+..++|+||||+|||++++.+|..++.++++++......
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~-------~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQ-------SRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHH-------HhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35789999999998877641 1112235567999999999999999999999999999887654321
Q ss_pred --hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 452 --KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 452 --~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
.|.|.....+.+.+..+.... .|+++||+|++..... + +....+.++++.-......+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-----g--~~~~aLlevld~~~~~~~~d------------ 454 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-----G--DPASALLEVLDPEQNVAFSD------------ 454 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-----C--CHHHHHHHHhccccEEEEec------------
Confidence 244444443444444433333 4899999998865321 1 22345556554322211111
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc-----CCCC---CCC
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK-----MNLT---RGI 601 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~-----~~~~---~~v 601 (665)
+..+-.|+.+...+|+|+|.. .++++|++ ||. .|.|+.++.++..+|++.++.. .++. -.+
T Consensus 455 -------~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i 523 (784)
T PRK10787 455 -------HYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTV 523 (784)
T ss_pred -------ccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEE
Confidence 112234555566789999887 59999999 995 8999999999999999988841 1111 112
Q ss_pred C---HHHHHHH-CCCCCHHHHHH----HHHHHHHHHHHhc---CCCCCHHHHHHHHH
Q psy15936 602 N---LRKIAEL-MPGASGAEVKG----VCTEAGMYALRER---RVHVTQEDFEMAVA 647 (665)
Q Consensus 602 d---l~~la~~-t~g~s~~dl~~----l~~~A~~~A~~~~---~~~It~~d~~~Al~ 647 (665)
+ ...++.. +..+-.|.++. +|+.+....+..+ ...|+.+++.+-+-
T Consensus 524 ~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 524 DDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred CHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 2 3444432 22233355554 4444443333222 23688888777654
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.3e-12 Score=141.07 Aligned_cols=203 Identities=19% Similarity=0.297 Sum_probs=143.6
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC------------
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC------------ 439 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~------------ 439 (665)
...+.+|+++.|++..++.++.++.. -..+.++||+||+|+|||++|+.+|..+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 45678999999999999999887754 134568999999999999999999987642
Q ss_pred ------------ceEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 440 ------------TFIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 440 ------------~lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
.++.+++++. .+...++.+...+.. ....|++|||++.+.. .. +
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A---~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SA---F 133 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HH---H
Confidence 2344443321 123345666655432 2357999999997632 22 4
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHH
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 583 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ee 583 (665)
+.|+..++..... + .+|++|+.+..+.+.+++ |+ ..+.|.+++.++
T Consensus 134 NaLLK~LEePp~~--v-----------------------------~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~e 179 (491)
T PRK14964 134 NALLKTLEEPAPH--V-----------------------------KFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDK 179 (491)
T ss_pred HHHHHHHhCCCCC--e-----------------------------EEEEEeCChHHHHHHHHH--hh-eeeecccccHHH
Confidence 4555555543221 1 577788888889999998 77 579999999999
Q ss_pred HHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 584 RLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 584 r~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
....++..+...++. ++..+..|+..+.| +.+++.+++..+..++- ..||.+++.+.
T Consensus 180 l~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~~----~~It~e~V~~l 237 (491)
T PRK14964 180 LVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYSN----NKISEKSVRDL 237 (491)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcC----CCCCHHHHHHH
Confidence 999999988876654 23347788888876 88999999988775532 35777766554
No 101
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.42 E-value=5.9e-12 Score=149.68 Aligned_cols=220 Identities=18% Similarity=0.273 Sum_probs=147.4
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC----------Cce
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE----------CTF 441 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~----------~~l 441 (665)
...+..++.+.|.+.+++++.+.+.. ....+++|+||||||||++|+.+|..+. ..+
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 34556777899999988877665543 3455789999999999999999999762 456
Q ss_pred EEEechhhh--hhhhccchHHHHHHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 442 IRVSGSELV--QKFIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 442 irv~~~dl~--~~~~g~~~~~~~~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
+.++...+. ..+.|..+..++.++..+.. ..+.|+||||++.+.+..... +..+..+.+...+.. ..
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l~~-------G~ 316 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPALAR-------GE 316 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHhhC-------CC
Confidence 666666554 24677788888999998764 457899999999997654221 111222223222211 11
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR 593 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~ 593 (665)
+ .+|+||+..+ .+|++|.| ||. .|.++.|+.+++..||+.+..
T Consensus 317 l-----------------------------~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 317 L-----------------------------RTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred e-----------------------------EEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 2 6898887643 38999999 995 899999999999999876655
Q ss_pred cCC----CC-CCCCHHHHHHHCCCCC-----HHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHH
Q psy15936 594 KMN----LT-RGINLRKIAELMPGAS-----GAEVKGVCTEAGMYAL-RERRVHVTQEDFEMAV 646 (665)
Q Consensus 594 ~~~----~~-~~vdl~~la~~t~g~s-----~~dl~~l~~~A~~~A~-~~~~~~It~~d~~~Al 646 (665)
.+. +. .+..+..++..+.+|- |...-.++.+|+.... ......+..+++...+
T Consensus 365 ~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 365 VLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred hhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 432 21 2333677777777654 4555667777655433 3344445555554443
No 102
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.8e-12 Score=145.96 Aligned_cols=206 Identities=18% Similarity=0.246 Sum_probs=143.4
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCce--------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF-------- 441 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l-------- 441 (665)
.+...+.+|+++.|++..++.|+.++.. -..+..+||+||+|+|||++|+.+|+.+++.-
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 4566788999999999999999888764 13456799999999999999999999876431
Q ss_pred ----------------EEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 442 ----------------IRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 442 ----------------irv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
+.++..+ ......++.++..+. .....|++|||+|.+.. ..
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A-- 135 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SA-- 135 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HH--
Confidence 1111110 112234556655432 13357999999997532 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
+..|++.++...+. + .+|++|+.+..+.+.+++ |+ ..+.|+.++.
T Consensus 136 -~NALLKtLEEPp~~--v-----------------------------~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~ 180 (709)
T PRK08691 136 -FNAMLKTLEEPPEH--V-----------------------------KFILATTDPHKVPVTVLS--RC-LQFVLRNMTA 180 (709)
T ss_pred -HHHHHHHHHhCCCC--c-----------------------------EEEEEeCCccccchHHHH--HH-hhhhcCCCCH
Confidence 34455555443221 1 578888888899999987 87 5788999999
Q ss_pred HHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
++....++..+...++.- +..+..|+..+.| +.+++.+++..+..+. ...|+.+++...+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia~g----~g~It~e~V~~lL 241 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIALG----SGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 999999999988776542 2237788888876 8899999998876542 3346666655543
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5.9e-12 Score=143.57 Aligned_cols=204 Identities=17% Similarity=0.268 Sum_probs=140.8
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+.+|+++.|++..++.|++++.. -.-+..+||+||+|+|||++|+.+|+.+++.
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 4566788999999999999999888754 1334567999999999999999999988642
Q ss_pred --------------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 441 --------------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 441 --------------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
++.++..+ ......++++...+.. ....|++|||+|.+...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------- 139 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------- 139 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------
Confidence 12222111 1122334555554332 23469999999986432
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEe
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEF 576 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~ 576 (665)
. ++.|+..++..... + .+|++|+.+..+.+.+++ |+ ..+.|
T Consensus 140 --a---~NaLLKtLEEPP~~--~-----------------------------~fIL~Ttd~~kil~TIlS--Rc-~~~~f 180 (618)
T PRK14951 140 --A---FNAMLKTLEEPPEY--L-----------------------------KFVLATTDPQKVPVTVLS--RC-LQFNL 180 (618)
T ss_pred --H---HHHHHHhcccCCCC--e-----------------------------EEEEEECCchhhhHHHHH--hc-eeeec
Confidence 2 44555555543221 1 477777788888888988 77 68999
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 577 PPPNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 577 ~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
..++.++....++..+...++.-+ ..+..|+..+.| +.+++.+++..+..+. ...||.+++..
T Consensus 181 ~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~~----~~~It~~~V~~ 244 (618)
T PRK14951 181 RPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAFG----SGQLQEAAVRQ 244 (618)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHH
Confidence 999999999999988877665532 237788888887 8888888887666442 33466555544
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=6.9e-12 Score=139.24 Aligned_cols=192 Identities=15% Similarity=0.272 Sum_probs=128.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
..+++||||+|+|||+|+.++++.+ +..++++++.++...+..........-|....+..++++++||++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 3569999999999999999999975 45678888888765543221111111233323345789999999976432
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-CCCCC---CCcc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT-NRIDI---LDPA 563 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT-n~~~~---Ld~a 563 (665)
. ..+..+..+++.+.... . .+|.++ +.|.. +.+.
T Consensus 210 ~---------~~q~elf~~~n~l~~~~-k--------------------------------~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 210 T---------GVQTELFHTFNELHDSG-K--------------------------------QIVICSDREPQKLSEFQDR 247 (440)
T ss_pred H---------HHHHHHHHHHHHHHHcC-C--------------------------------eEEEECCCCHHHHHHHHHH
Confidence 1 23333444444332110 0 245555 55554 4567
Q ss_pred ccCCCCee--EEEEeCCCCHHHHHHHHHHhhccCC--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy15936 564 LLRPGRID--RKIEFPPPNEEARLDILRIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 639 (665)
Q Consensus 564 Llr~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~--~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~ 639 (665)
+.+ ||. ..+.+.+|+.+.|.+|++..+...+ +++++ ++.||....| +.+.|..++.....++...+ ..||.
T Consensus 248 L~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~ 322 (440)
T PRK14088 248 LVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDL 322 (440)
T ss_pred Hhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCH
Confidence 877 764 4889999999999999999887544 43333 7888888876 78999998888766665544 46888
Q ss_pred HHHHHHHHHHhh
Q psy15936 640 EDFEMAVAKVMQ 651 (665)
Q Consensus 640 ~d~~~Al~~~~~ 651 (665)
+...++++.+..
T Consensus 323 ~~a~~~L~~~~~ 334 (440)
T PRK14088 323 KEAILLLKDFIK 334 (440)
T ss_pred HHHHHHHHHHhc
Confidence 888888887643
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=6.8e-12 Score=140.97 Aligned_cols=203 Identities=20% Similarity=0.267 Sum_probs=138.9
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+..|+++.|++..++.++.++.. -..+..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 456788999999999999999888754 1234456999999999999999999988531
Q ss_pred -------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 441 -------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 441 -------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
++.++..+ ......++.+...+. ...+.+++|||+|.+.. ..+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~--------------~a~ 133 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK--------------SAF 133 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH--------------HHH
Confidence 33333221 111223444433322 23467999999986521 224
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHH
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 583 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ee 583 (665)
..|+..++..... . .+|++|+.+..+.+.+++ |+ ..+.|++|+.++
T Consensus 134 naLLk~LEep~~~--t-----------------------------~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~e 179 (504)
T PRK14963 134 NALLKTLEEPPEH--V-----------------------------IFILATTEPEKMPPTILS--RT-QHFRFRRLTEEE 179 (504)
T ss_pred HHHHHHHHhCCCC--E-----------------------------EEEEEcCChhhCChHHhc--ce-EEEEecCCCHHH
Confidence 5556555543221 1 467778888899999988 77 479999999999
Q ss_pred HHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 584 RLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 584 r~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
....++..+...++.- +..+..++..+.| +.+++.++++.+... ...||.+++...
T Consensus 180 l~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~ 236 (504)
T PRK14963 180 IAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEA 236 (504)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHH
Confidence 9999999888766542 2236778888876 677787777776432 235777776654
No 106
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.1e-12 Score=140.71 Aligned_cols=204 Identities=20% Similarity=0.277 Sum_probs=137.3
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------- 439 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~----------- 439 (665)
+...+..|+++.|++..++.+...+.. | ..+..+||+||+|+|||++|+.+|+.+.+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 456678899999999999998887754 1 23445899999999999999999998764
Q ss_pred -------------ceEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 440 -------------TFIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 440 -------------~lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
.++.++.... .....++.+...+. .....|++|||+|.+.. ..
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a--- 135 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QS--- 135 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HH---
Confidence 2222222110 11122344443332 23457999999997632 23
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
...|+..++...+. + .+|++|+.+..+.+.+++ |+ ..++|.+++.+
T Consensus 136 ~naLLK~LEepp~~--v-----------------------------~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~ 181 (546)
T PRK14957 136 FNALLKTLEEPPEY--V-----------------------------KFILATTDYHKIPVTILS--RC-IQLHLKHISQA 181 (546)
T ss_pred HHHHHHHHhcCCCC--c-----------------------------eEEEEECChhhhhhhHHH--he-eeEEeCCCCHH
Confidence 34444444443221 1 467777778888888888 77 68999999999
Q ss_pred HHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
+....++..+...++.. +..+..++..+.| +.+++.+++..+..+.- ..|+.+++.++
T Consensus 182 eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~i~~~~----~~It~~~V~~~ 240 (546)
T PRK14957 182 DIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQAISFCG----GELKQAQIKQM 240 (546)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 99989988887666542 2336777878765 78888888887764421 35776666654
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=1.3e-11 Score=124.90 Aligned_cols=195 Identities=16% Similarity=0.241 Sum_probs=129.3
Q ss_pred CChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchH
Q psy15936 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSR 459 (665)
Q Consensus 383 G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~ 459 (665)
+....++.+++++. ...+.+++|+||+|||||++|+++++.+ +..++.+++.++....
T Consensus 21 ~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------ 81 (226)
T TIGR03420 21 GNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------ 81 (226)
T ss_pred CcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence 45667777766543 1356789999999999999999999876 4678888888765322
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccc
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVT 539 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~ 539 (665)
..++... ..+.+++|||++.+... ...+..+..+++.......
T Consensus 82 --~~~~~~~--~~~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~~~~~------------------------ 124 (226)
T TIGR03420 82 --PEVLEGL--EQADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVREAGG------------------------ 124 (226)
T ss_pred --HHHHhhc--ccCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHHHcCC------------------------
Confidence 1222222 23469999999976331 1223445555543322110
Q ss_pred hhhhhccccEEEEEeC-CCCCCC---ccccCCCCe--eEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCC
Q psy15936 540 QEDFEMAVAKVIMATN-RIDILD---PALLRPGRI--DRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPG 612 (665)
Q Consensus 540 ~~df~~a~~~VIatTn-~~~~Ld---~aLlr~gRf--d~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g 612 (665)
.+|++++ .+..++ +.+.+ |+ ...+.+++|+.+++..+++.++...++. .+.-+..|+..+.|
T Consensus 125 ---------~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g 193 (226)
T TIGR03420 125 ---------RLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR 193 (226)
T ss_pred ---------eEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 2555554 333332 56666 65 4689999999999999999877655443 22226778886554
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+.+++..+++.+...+..++ ..|+.+.+.+.+
T Consensus 194 -n~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 194 -DMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred -CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 89999999999887665644 478888877665
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.38 E-value=1.6e-11 Score=140.30 Aligned_cols=218 Identities=17% Similarity=0.269 Sum_probs=139.8
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceEEEechh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFIRVSGSE 448 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~lirv~~~d 448 (665)
+.+.|-++++++|..+|.-. +. |..++..++|+|+||||||++++.+.+.+ ...+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~pa------Ik--gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESG------IK--QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHH------Hh--cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 35789999999998877642 22 22333445799999999999999998766 25578899854
Q ss_pred hhhh----------h----h---ccchHHHHHHHHHHH--hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 449 LVQK----------F----I---GEGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 449 l~~~----------~----~---g~~~~~~~~if~~a~--~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
+... + + ......+..+|.... .....||+|||||.|... .+..|..|++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 3211 1 0 111233445555432 123469999999987542 24556666664
Q ss_pred hcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCC---CCCCCccccCCCCeeE-EEEeCCCCHHHHH
Q psy15936 510 LDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR---IDILDPALLRPGRIDR-KIEFPPPNEEARL 585 (665)
Q Consensus 510 ~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~---~~~Ld~aLlr~gRfd~-~I~~~~P~~eer~ 585 (665)
... .+. .+ .||+++|. ++.+++.+++ ||.. .|.|++++.+++.
T Consensus 896 ~~~-s~S-KL-----------------------------iLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~ 942 (1164)
T PTZ00112 896 PTK-INS-KL-----------------------------VLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIE 942 (1164)
T ss_pred hhc-cCC-eE-----------------------------EEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHH
Confidence 321 111 11 47888875 4567788877 6654 5899999999999
Q ss_pred HHHHHhhccCC-CCCCCCHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 586 DILRIHSRKMN-LTRGINLRKIAELMPGA--SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 586 ~Il~~~l~~~~-~~~~vdl~~la~~t~g~--s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
+||+..+.... +-++.-+..+|+..... ..|..-.+|+.|+.. +....|+.+|+.+|+..+..
T Consensus 943 dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 943 KIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 99999887542 11222266666644322 234444666666653 34558999999999987744
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=1.4e-11 Score=136.55 Aligned_cols=193 Identities=15% Similarity=0.245 Sum_probs=126.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 489 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~ 489 (665)
..+++||||+|+|||+|++++++.+ +..+++++..++...+...........|.... ...++++|||++.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3679999999999999999999876 57788888776655433221111112333322 356799999999764322
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCC-CC---CCCcccc
Q psy15936 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-ID---ILDPALL 565 (665)
Q Consensus 490 ~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~-~~---~Ld~aLl 565 (665)
..+..+..+++.+..- +. .+|.|++. |. .+++.++
T Consensus 219 --------~~qeelf~l~N~l~~~-~k--------------------------------~IIlts~~~p~~l~~l~~rL~ 257 (445)
T PRK12422 219 --------ATQEEFFHTFNSLHTE-GK--------------------------------LIVISSTCAPQDLKAMEERLI 257 (445)
T ss_pred --------hhHHHHHHHHHHHHHC-CC--------------------------------cEEEecCCCHHHHhhhHHHHH
Confidence 2334444444433110 11 35666654 43 4678898
Q ss_pred CCCCee--EEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHh-cCCCCCHH
Q psy15936 566 RPGRID--RKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGM-YALRE-RRVHVTQE 640 (665)
Q Consensus 566 r~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~-~A~~~-~~~~It~~ 640 (665)
+ ||. ..+.+++|+.++|..|++..+...++.-+ .-++.++....+ +.+.+...+...+. .|... ....||.+
T Consensus 258 S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~ 334 (445)
T PRK12422 258 S--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVD 334 (445)
T ss_pred h--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHH
Confidence 8 885 69999999999999999998887654422 226668887775 56777777666642 23222 23568999
Q ss_pred HHHHHHHHHhh
Q psy15936 641 DFEMAVAKVMQ 651 (665)
Q Consensus 641 d~~~Al~~~~~ 651 (665)
++.++++.+..
T Consensus 335 ~~~~~l~~~~~ 345 (445)
T PRK12422 335 DIKALLHDVLE 345 (445)
T ss_pred HHHHHHHHhhh
Confidence 99999987754
No 110
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=1e-11 Score=126.31 Aligned_cols=180 Identities=12% Similarity=0.141 Sum_probs=115.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIE 490 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~ 490 (665)
..++||||||||||+|++++|+++ +....++...+.... ...++... ...+++++||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~~--- 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------SPAVLENL--EQQDLVCLDDLQAVIGN--- 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------hHHHHhhc--ccCCEEEEeChhhhcCC---
Confidence 468999999999999999999875 334444444321110 01222222 24579999999976432
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-CCCCCCC---ccccC
Q psy15936 491 SGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT-NRIDILD---PALLR 566 (665)
Q Consensus 491 ~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT-n~~~~Ld---~aLlr 566 (665)
...+..+..+++..... +.. .+|.|+ ..|..++ +.+.+
T Consensus 107 ------~~~~~~l~~l~n~~~~~-~~~-------------------------------illits~~~p~~l~~~~~~L~s 148 (229)
T PRK06893 107 ------EEWELAIFDLFNRIKEQ-GKT-------------------------------LLLISADCSPHALSIKLPDLAS 148 (229)
T ss_pred ------hHHHHHHHHHHHHHHHc-CCc-------------------------------EEEEeCCCChHHccccchhHHH
Confidence 23344555656544221 000 234444 5565554 78888
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 567 PGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 567 ~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
+.+++..+.+++|+.+++.+|++..+...++. ++.-...|+....| +.+.+..++......+..++ ..||...+.++
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~v~~~ 226 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ-RKLTIPFVKEI 226 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHH
Confidence 44555689999999999999999887655543 22237888998886 77888888887654444333 36998888776
Q ss_pred H
Q psy15936 646 V 646 (665)
Q Consensus 646 l 646 (665)
+
T Consensus 227 L 227 (229)
T PRK06893 227 L 227 (229)
T ss_pred h
Confidence 5
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=5.8e-12 Score=142.61 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=139.9
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+..|+++.|++..++.+..++.. -..+..+||+||+|+|||++|+.+|..+++.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 455678899999999999999887754 1234567999999999999999999988652
Q ss_pred --------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 441 --------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 441 --------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
++.++... ......++.+...+.. ....|++|||+|.+.. ..
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a--- 135 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SA--- 135 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HH---
Confidence 11111110 1122335556555432 2346999999997632 22
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
.+.|++.++..... + .+|++|+.+..+.+.+++ |+ ..+.|++++.+
T Consensus 136 ~naLLK~LEepp~~--~-----------------------------~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~ 181 (527)
T PRK14969 136 FNAMLKTLEEPPEH--V-----------------------------KFILATTDPQKIPVTVLS--RC-LQFNLKQMPPP 181 (527)
T ss_pred HHHHHHHHhCCCCC--E-----------------------------EEEEEeCChhhCchhHHH--HH-HHHhcCCCCHH
Confidence 44555555543221 1 477777778888888888 76 68999999999
Q ss_pred HHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+....+...+...++..+ ..+..++..+.| +.+++.+++..+..+ +...|+.+++...+
T Consensus 182 ~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 182 LIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999988888876655422 235777878776 788988998877654 24457776665544
No 112
>CHL00176 ftsH cell division protein; Validated
Probab=99.37 E-value=5.6e-14 Score=161.27 Aligned_cols=239 Identities=13% Similarity=0.199 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCC
Q psy15936 267 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVT 339 (665)
Q Consensus 267 ~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~ 339 (665)
..+++++|+++.++++.+.+.. ...++.|+..|...++++ |||||||.++++ +.+..|+....+.+...+.+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 3456677788999999887776 466888999999988887 999999999988 44567888888888877777
Q ss_pred CCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHH-HHHHhhcCCCchhHHHhhCCCCCceEEE
Q psy15936 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKE-IKEVIELPVKHPELFDALGIAQPKGVLL 418 (665)
Q Consensus 340 ~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~-l~~~l~l~l~~~d~f~~~g~~~~~~vLL 418 (665)
.+...+ +.+|..+....||++|+|++|.+...+....+|.....+. +..++ ...| |+....++++
T Consensus 259 ~~~~~v-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL----~~~d-----g~~~~~~ViV 324 (638)
T CHL00176 259 VGAARV-----RDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLL----TEMD-----GFKGNKGVIV 324 (638)
T ss_pred hhHHHH-----HHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHH----hhhc-----cccCCCCeeE
Confidence 666544 7888888899999999999999987775555554444433 33332 2222 3445567888
Q ss_pred eCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChH
Q psy15936 419 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE 498 (665)
Q Consensus 419 ~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~ 498 (665)
.| +++.++.++.+++++++.+....+..++...+..+++......+ +.++++
T Consensus 325 Ia---------aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~---------------- 376 (638)
T CHL00176 325 IA---------ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVS---------------- 376 (638)
T ss_pred EE---------ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHH----------------
Confidence 88 77888889999999999998888888888888999987554421 223332
Q ss_pred HHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEE
Q psy15936 499 VQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553 (665)
Q Consensus 499 ~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIat 553 (665)
+..+...+.|+++++ +.++|.+|++.+.|.+...++.+||+.+..++++.
T Consensus 377 ----l~~lA~~t~G~sgaD-L~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 377 ----LELIARRTPGFSGAD-LANLLNEAAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred ----HHHHHhcCCCCCHHH-HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 677888899999887 99999999999999999999999999998777553
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.37 E-value=1.7e-11 Score=130.33 Aligned_cols=208 Identities=23% Similarity=0.311 Sum_probs=136.7
Q ss_pred hhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-----Cce
Q psy15936 367 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTF 441 (665)
Q Consensus 367 ~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-----~~l 441 (665)
..|.+...+.+|+++.|.+++++.++.++.. ....+++|+||||||||++++++++.+. ..+
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~ 71 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENF 71 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccce
Confidence 3467888889999999999999999887743 1223689999999999999999999873 334
Q ss_pred EEEechhhhhhhhccchHHHHHHH-HHHHh-----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc
Q psy15936 442 IRVSGSELVQKFIGEGSRMVRELF-VMARE-----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 515 (665)
Q Consensus 442 irv~~~dl~~~~~g~~~~~~~~if-~~a~~-----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~ 515 (665)
+.+++++.. .....+..+ ..+.. ..+.++++||+|.+.. ..+..+..++ +....
T Consensus 72 i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~l---e~~~~ 131 (319)
T PRK00440 72 LELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTM---EMYSQ 131 (319)
T ss_pred EEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHH---hcCCC
Confidence 555443311 111111222 22211 2356999999997632 2233344433 32221
Q ss_pred cCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 516 TKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 516 ~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
.. .+|+++|.+..+.+++.+ |+. .++|++|+.++...+++.++...
T Consensus 132 ~~-------------------------------~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 132 NT-------------------------------RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred CC-------------------------------eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHc
Confidence 11 467778877777788887 764 69999999999999999998876
Q ss_pred CCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 596 NLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 596 ~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
++. .+..+..++..+.| +.+.+.+.++.+... ...||.+++..++.
T Consensus 178 ~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 178 GIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 653 23347788887765 556666666554432 34688887776653
No 114
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=2.3e-11 Score=138.77 Aligned_cols=203 Identities=23% Similarity=0.299 Sum_probs=141.3
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|++..++.++..+.. ...+..+||+||+|||||++|+.+|..+.+.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 456788999999999999999888754 1345568999999999999999999987532
Q ss_pred --------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 441 --------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 441 --------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
++.+++.. ..+...++.+...+.. ....|++|||+|.+.. . .
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~---a 135 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------G---A 135 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------H---H
Confidence 22222211 1223345566555432 2357999999997632 1 2
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
+..|+..++..... + .+|++|+.++.+.+.+++ |+ ..+.|++|+.+
T Consensus 136 ~naLLKtLEepp~~--~-----------------------------ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ 181 (559)
T PRK05563 136 FNALLKTLEEPPAH--V-----------------------------IFILATTEPHKIPATILS--RC-QRFDFKRISVE 181 (559)
T ss_pred HHHHHHHhcCCCCC--e-----------------------------EEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHH
Confidence 44555555443221 1 467777778999999998 77 47899999999
Q ss_pred HHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
+....++..+...++.-+ ..+..++..+.| +.+++.+++..+..++ ...||.+++..
T Consensus 182 ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 182 DIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 999999998887665422 336778888776 7888888888776542 33566665443
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.36 E-value=1.8e-11 Score=130.35 Aligned_cols=162 Identities=21% Similarity=0.315 Sum_probs=112.3
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
+++...+.+++++.|.++.++.++..+.. | ..+..++++||||+|||++|+++++.++..++.+++.+
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 56778889999999999999988887742 1 23456666999999999999999999998898888876
Q ss_pred hhhhhhccchHHHHHHHHHHH-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccch
Q psy15936 449 LVQKFIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAG 527 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg 527 (665)
. . .......+........ ...++++++||+|.+.. .+.+..+..+++.. ... .
T Consensus 79 ~--~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~---~~~--~-------- 132 (316)
T PHA02544 79 C--R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY---SKN--C-------- 132 (316)
T ss_pred c--c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc---CCC--c--------
Confidence 1 1 1111111111111111 13468999999997521 22344444444432 111 1
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
.+|++||.+..+.+++++ ||. .+.|+.|+.+++.++++.++
T Consensus 133 ---------------------~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 133 ---------------------SFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred ---------------------eEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 588899999999999998 884 78999999999988876543
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.36 E-value=3.6e-11 Score=122.85 Aligned_cols=178 Identities=14% Similarity=0.160 Sum_probs=116.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 489 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~ 489 (665)
...++|+||+|||||+|+.++++.+. ..+.++...+.... ...+++... ...+++|||++.+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~-- 112 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAGD-- 112 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCC--
Confidence 45899999999999999999998764 33444444432111 111222211 1368999999976432
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-CCCCC---CCcccc
Q psy15936 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT-NRIDI---LDPALL 565 (665)
Q Consensus 490 ~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT-n~~~~---Ld~aLl 565 (665)
+..+..+..+++..... +. . .+|+|+ ++|.. +.+.|+
T Consensus 113 -------~~~~~~lf~l~n~~~e~-g~--~-----------------------------~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 113 -------ELWEMAIFDLYNRILES-GR--T-----------------------------RLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred -------HHHHHHHHHHHHHHHHc-CC--C-----------------------------eEEEeCCCChHHcCcccHHHH
Confidence 23444455555443211 10 0 255555 55544 578998
Q ss_pred CCCCee--EEEEeCCCCHHHHHHHHHHhhccCCCC--CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q psy15936 566 RPGRID--RKIEFPPPNEEARLDILRIHSRKMNLT--RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 641 (665)
Q Consensus 566 r~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~~~--~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d 641 (665)
+ |+. ..+.+.+|+.+++.++++..+...++. ++ -.+.|+....| +.+.+..++......+..+ ...||...
T Consensus 154 S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~-v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~-~~~it~~~ 228 (235)
T PRK08084 154 S--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPED-VGRFLLKRLDR-EMRTLFMTLDQLDRASITA-QRKLTIPF 228 (235)
T ss_pred H--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc-CCCCCHHH
Confidence 8 875 599999999999999999866654443 33 37888998886 7888888888864444443 34599888
Q ss_pred HHHHH
Q psy15936 642 FEMAV 646 (665)
Q Consensus 642 ~~~Al 646 (665)
+.+++
T Consensus 229 ~k~~l 233 (235)
T PRK08084 229 VKEIL 233 (235)
T ss_pred HHHHH
Confidence 87765
No 117
>KOG0740|consensus
Probab=99.36 E-value=3.6e-14 Score=152.82 Aligned_cols=221 Identities=15% Similarity=0.119 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCC
Q psy15936 267 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVT 339 (665)
Q Consensus 267 ~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~ 339 (665)
+.|.+++|++..++.+.+.+.+|...++.|+.+- .+++++ |||+|||+|+++ +.+++|+..+.+++..+|+|
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~G 228 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVG 228 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccC
Confidence 5567777899999999999999999999999884 444553 999999999887 77889999999999999999
Q ss_pred CCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEe
Q psy15936 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419 (665)
Q Consensus 340 ~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~ 419 (665)
++.+.+ +.+|++|+...|+++|++++|.+-..+ ..+.++.-.+++.-+.+ + +......+...|++.
T Consensus 229 e~eK~v-----ralf~vAr~~qPsvifidEidslls~R---s~~e~e~srr~ktefLi---q---~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 229 ESEKLV-----RALFKVARSLQPSVIFIDEIDSLLSKR---SDNEHESSRRLKTEFLL---Q---FDGKNSAPDDRVLVI 294 (428)
T ss_pred hHHHHH-----HHHHHHHHhcCCeEEEechhHHHHhhc---CCcccccchhhhhHHHh---h---hccccCCCCCeEEEE
Confidence 999988 999999999999999999999987777 23344444444333322 1 222233455689999
Q ss_pred CCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHH
Q psy15936 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 499 (665)
Q Consensus 420 GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~ 499 (665)
| |+++.+++|-++.| ++.-...++.++...+..++.......|..+.-
T Consensus 295 g---------aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~--------------------- 342 (428)
T KOG0740|consen 295 G---------ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSD--------------------- 342 (428)
T ss_pred e---------cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccH---------------------
Confidence 9 99999999987776 333334466777777788887765554432111
Q ss_pred HHHHHHHHHhhcCCcccCccccccccchhhhhhhhhc
Q psy15936 500 QRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV 536 (665)
Q Consensus 500 ~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~ 536 (665)
.-+..+++.++|+++.+ +..+|.+|.|..+|....
T Consensus 343 -~d~~~l~~~Tegysgsd-i~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 343 -LDISLLAKVTEGYSGSD-ITALCKEAAMGPLRELGG 377 (428)
T ss_pred -HHHHHHHHHhcCccccc-HHHHHHHhhcCchhhccc
Confidence 12778889999999988 999999999987776654
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.36 E-value=1.2e-13 Score=156.07 Aligned_cols=234 Identities=15% Similarity=0.193 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCce
Q psy15936 271 NLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCR 343 (665)
Q Consensus 271 ~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~ 343 (665)
++.|++..++++++.+.. ..+++.|+..|..+++++ |||||||.++++ +.+..|+....+++...+.+.+.+
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~ 134 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS 134 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHH
Confidence 344477888888887776 577899999998888876 999999999887 445678888888888888877766
Q ss_pred EEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCC
Q psy15936 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423 (665)
Q Consensus 344 ~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppG 423 (665)
.+ +.+|..+....|+++|+|++|.+...+....++.+.....+...+ +...| |+....++++.|
T Consensus 135 ~l-----~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l---L~~~d-----~~~~~~~v~vI~--- 198 (495)
T TIGR01241 135 RV-----RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL---LVEMD-----GFGTNTGVIVIA--- 198 (495)
T ss_pred HH-----HHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHH---Hhhhc-----cccCCCCeEEEE---
Confidence 55 888988888999999999999998777554544443333332222 22222 334455688888
Q ss_pred ChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 424 tGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
+++....++++++++++.+....++.++...+..++.......+ +-++++ +
T Consensus 199 ------aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---~~~~~~--------------------l 249 (495)
T TIGR01241 199 ------ATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---LAPDVD--------------------L 249 (495)
T ss_pred ------ecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC---CCcchh--------------------H
Confidence 77888999999999999998888888888888999987554322 112222 6
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
..+...+.|+++++ +.++|.+|+..+.+++...++.+|+..+...++
T Consensus 250 ~~la~~t~G~sgad-l~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 250 KAVARRTPGFSGAD-LANLLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHhCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 68888999999887 999999999999999988999999998877654
No 119
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.35 E-value=1.5e-11 Score=143.23 Aligned_cols=208 Identities=22% Similarity=0.310 Sum_probs=135.8
Q ss_pred hccCCCCCccccCCChHHHH---HHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 370 VEKVPDSTYEMVGGLDNQIK---EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~---~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.+...+.+++++.|++..+. .++.++.. ....+++|+||||||||++|+++++.++..++.+++
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 34566788899999988774 45454432 344589999999999999999999999999888887
Q ss_pred hhhhhhhhccchHHHHHHHHHHH-----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccc
Q psy15936 447 SELVQKFIGEGSRMVRELFVMAR-----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521 (665)
Q Consensus 447 ~dl~~~~~g~~~~~~~~if~~a~-----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~ 521 (665)
..... ..++..+..+. .....++||||||.+.. ..+..+...+ +.. .+
T Consensus 86 ~~~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~l---E~g----~I-- 138 (725)
T PRK13341 86 VLAGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWV---ENG----TI-- 138 (725)
T ss_pred hhhhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHh---cCc----eE--
Confidence 64211 11222222221 13456999999997632 2333333322 211 01
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEe--CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc-----
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT--NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK----- 594 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatT--n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~----- 594 (665)
.+|++| |....+++++++ |+ ..+.|++++.+++..+++..+..
T Consensus 139 ---------------------------iLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~ 188 (725)
T PRK13341 139 ---------------------------TLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGY 188 (725)
T ss_pred ---------------------------EEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 355555 334568899998 65 46999999999999999988762
Q ss_pred ----CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHH
Q psy15936 595 ----MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKV 649 (665)
Q Consensus 595 ----~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~--~~~It~~d~~~Al~~~ 649 (665)
..++++ .++.|+..+.| +.+.+.++++.|...+.... ...|+.+++.+++.+.
T Consensus 189 g~~~v~I~de-aL~~La~~s~G-D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 189 GDRKVDLEPE-AEKHLVDVANG-DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred CCcccCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 122222 26778888765 67888888887764332221 2237778777777653
No 120
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.35 E-value=2.9e-11 Score=130.78 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=139.5
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+..|+++.|.++.++.+.+.+.. | ..+..+||+||||+|||++|++++..+.+.
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4566788899999999999999887743 1 345578999999999999999999987532
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHHhc----CCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~~----~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.++..+ ......++.++..+... ...++++||+|.+.. .
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------S 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------H
Confidence 22222211 11223345566554322 346999999987532 1
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
.+..++..++..... . .+|++|+.++.+.+++++ |+ ..++|++|+.
T Consensus 133 ~~~~Ll~~le~~~~~--~-----------------------------~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~ 178 (355)
T TIGR02397 133 AFNALLKTLEEPPEH--V-----------------------------VFILATTEPHKIPATILS--RC-QRFDFKRIPL 178 (355)
T ss_pred HHHHHHHHHhCCccc--e-----------------------------eEEEEeCCHHHHHHHHHh--he-eEEEcCCCCH
Confidence 244555555443211 1 467778888888889988 77 5799999999
Q ss_pred HHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
++...++..+++..++.-+ ..+..++..+.| +++.+.+.++.+..++ ...||.+|+.+++
T Consensus 179 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 179 EDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 9999999998887665322 235667777765 6777777777666543 2347777776543
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.35 E-value=1.8e-11 Score=144.36 Aligned_cols=209 Identities=23% Similarity=0.343 Sum_probs=135.7
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC---C-ceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh-
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---P-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK- 452 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~---~-~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~- 452 (665)
...+.|+++.++.+.+.+.. ...|+.. | ..+||+||||||||++|+++|..++.++++++++++...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc
Confidence 45688999999999887754 2334432 3 358999999999999999999999999999999886432
Q ss_pred ----hhccch-----HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccc
Q psy15936 453 ----FIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVC 523 (665)
Q Consensus 453 ----~~g~~~-----~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc 523 (665)
+.|... ..-..+....+.+..+|+++||||++ ++++++.+.++++...-..... .
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g-~---- 588 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNG-R---- 588 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCC-c----
Confidence 111110 11123444445577789999999974 5677777777776421000000 0
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------------------------CCCCccccCCCCeeEEEEeCC
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------------------------DILDPALLRPGRIDRKIEFPP 578 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------------------------~~Ld~aLlr~gRfd~~I~~~~ 578 (665)
.-||.. ..||+|||.. ..+.|.|+. |||.+|.|.+
T Consensus 589 ----------------~vd~~~--~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~p 648 (731)
T TIGR02639 589 ----------------KADFRN--VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNP 648 (731)
T ss_pred ----------------ccCCCC--CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCC
Confidence 001111 1466666542 125677877 9999999999
Q ss_pred CCHHHHHHHHHHhhccC-------CCCCCC---CHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Q psy15936 579 PNEEARLDILRIHSRKM-------NLTRGI---NLRKIAEL--MPGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 579 P~~eer~~Il~~~l~~~-------~~~~~v---dl~~la~~--t~g~s~~dl~~l~~~A~~~A~ 630 (665)
++.++..+|++..+..+ ++.-.+ -.+.|+.. ...+..+.|+.+++.....++
T Consensus 649 Ls~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 649 LSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 99999999999887532 111111 24556664 234556788877777655543
No 122
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.35 E-value=1.1e-11 Score=147.77 Aligned_cols=169 Identities=22% Similarity=0.330 Sum_probs=124.6
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceE
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFI 442 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~li 442 (665)
..+..++.+.|.+.+++++.+.+.. ....+++|+||||||||++|+++|..+ +..++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 3455677889999988888776643 345678999999999999999999987 67788
Q ss_pred EEechhhh--hhhhccchHHHHHHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 443 RVSGSELV--QKFIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 443 rv~~~dl~--~~~~g~~~~~~~~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
.++...+. ..+.|..+..++.+|..... ..+.|+||||++.+.+..... +..+.++.+...+. .+.+
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~~~~lkp~l~-------~g~l 308 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALA-------RGEL 308 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhHHHHhcchhh-------cCCC
Confidence 88777654 34667778888888887543 567899999999997654211 12233444333221 1112
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCC-----CCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI-----LDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~-----Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
.+|+||+..+. +|+++.| ||+ .|.++.|+.+++..|++.+...
T Consensus 309 -----------------------------~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 309 -----------------------------HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred -----------------------------eEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 68999987763 8999999 997 6889999999999999887765
Q ss_pred CC
Q psy15936 595 MN 596 (665)
Q Consensus 595 ~~ 596 (665)
+.
T Consensus 357 ~e 358 (857)
T PRK10865 357 YE 358 (857)
T ss_pred hc
Confidence 44
No 123
>PRK08727 hypothetical protein; Validated
Probab=99.34 E-value=5.2e-11 Score=121.46 Aligned_cols=180 Identities=20% Similarity=0.241 Sum_probs=116.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 489 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~ 489 (665)
...++|+||+|||||+|+++++..+ +....+++..++... ...++... ....+++|||++.+....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~- 109 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQR- 109 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCCh-
Confidence 3569999999999999999997764 445555554443221 12233332 345799999999764322
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC-CCCCC---Ccccc
Q psy15936 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN-RIDIL---DPALL 565 (665)
Q Consensus 490 ~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn-~~~~L---d~aLl 565 (665)
..+..+..+++...... . .+|+|+| .|..+ +++++
T Consensus 110 --------~~~~~lf~l~n~~~~~~----~-----------------------------~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 110 --------EDEVALFDFHNRARAAG----I-----------------------------TLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred --------HHHHHHHHHHHHHHHcC----C-----------------------------eEEEECCCChhhhhhhhHHHH
Confidence 23344445554432210 0 3666664 55544 68898
Q ss_pred CCCCe--eEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy15936 566 RPGRI--DRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 642 (665)
Q Consensus 566 r~gRf--d~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 642 (665)
+ || ...+.|++|+.+++.+|++.++...++. ++..+..|+..+.| +.+.+.++++.....+...+ ..||...+
T Consensus 149 S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~ 224 (233)
T PRK08727 149 S--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFL 224 (233)
T ss_pred H--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHH
Confidence 8 86 4589999999999999999877654443 22237788888775 55666666776655455444 37999888
Q ss_pred HHHHHH
Q psy15936 643 EMAVAK 648 (665)
Q Consensus 643 ~~Al~~ 648 (665)
.+.+..
T Consensus 225 ~~~l~~ 230 (233)
T PRK08727 225 RRVLEE 230 (233)
T ss_pred HHHHhh
Confidence 887754
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=1.9e-11 Score=142.91 Aligned_cols=208 Identities=20% Similarity=0.280 Sum_probs=132.7
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCC----CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh---
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGI----AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ--- 451 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~----~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~--- 451 (665)
..+.|++++++.+.+.+... ..|+ .|..++||+||||||||.+|+++|..++.++++++++++..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccccc
Confidence 45789999999998888642 1232 22347999999999999999999999999999999987643
Q ss_pred --hhhccchHH-----HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccc
Q psy15936 452 --KFIGEGSRM-----VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCT 524 (665)
Q Consensus 452 --~~~g~~~~~-----~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~ 524 (665)
.+.|..... -..+....+.+..+|+++||||++ ++++++.+.++++...-.+... .
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g-~----- 592 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNG-R----- 592 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCC-c-----
Confidence 222211110 112333444566789999999974 4577777777776321100000 0
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCC-------------------------CCCCccccCCCCeeEEEEeCCC
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------------------------DILDPALLRPGRIDRKIEFPPP 579 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------------------------~~Ld~aLlr~gRfd~~I~~~~P 579 (665)
.-||.+ ..+|+|||.- ..+.|+|+. |+|.+|.|+++
T Consensus 593 ---------------~vd~rn--~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L 653 (758)
T PRK11034 593 ---------------KADFRN--VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHL 653 (758)
T ss_pred ---------------eecCCC--cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCC
Confidence 001111 1467777621 235688887 99999999999
Q ss_pred CHHHHHHHHHHhhcc-------CCCCCCCC---HHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q psy15936 580 NEEARLDILRIHSRK-------MNLTRGIN---LRKIAELM--PGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 580 ~~eer~~Il~~~l~~-------~~~~~~vd---l~~la~~t--~g~s~~dl~~l~~~A~~~A~ 630 (665)
+.++..+|+..++.. .++.-.++ ++.|+... ..+-.|.++.+++.-....+
T Consensus 654 ~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~l 716 (758)
T PRK11034 654 STDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999999877643 23332222 45555433 22345677776666554443
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=2.8e-11 Score=134.62 Aligned_cols=191 Identities=14% Similarity=0.265 Sum_probs=133.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchH---HHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSR---MVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~---~~~~if~~a~~~~p~VlliDEID~l 484 (665)
..+++|||++|+|||+|++++++.+ +..++++++.++...+...... .... |... -...+++++||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~-~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNE-ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHH-hccCCEEEEeccccc
Confidence 3579999999999999999999865 4677888888877665433221 1111 2111 135679999999976
Q ss_pred ccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCC-CC---CC
Q psy15936 485 GSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-ID---IL 560 (665)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~-~~---~L 560 (665)
..+ ...+..+..+++....... .+|.|++. |. .+
T Consensus 219 ~~k---------~~~~e~lf~l~N~~~~~~k---------------------------------~iIltsd~~P~~l~~l 256 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNFIENDK---------------------------------QLFFSSDKSPELLNGF 256 (450)
T ss_pred cCC---------HHHHHHHHHHHHHHHHcCC---------------------------------cEEEECCCCHHHHhhc
Confidence 432 2445556666655432211 25666654 33 35
Q ss_pred CccccCCCCeeE--EEEeCCCCHHHHHHHHHHhhccCCCC---CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc-C
Q psy15936 561 DPALLRPGRIDR--KIEFPPPNEEARLDILRIHSRKMNLT---RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-R 634 (665)
Q Consensus 561 d~aLlr~gRfd~--~I~~~~P~~eer~~Il~~~l~~~~~~---~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~-~ 634 (665)
++.+.+ ||.+ .+.+.+|+.++|.+|++..+...++. ++.-+..|+..+.| ++|.+..+|..+...+.... .
T Consensus 257 ~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~ 333 (450)
T PRK14087 257 DNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEE 333 (450)
T ss_pred cHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCC
Confidence 788888 8754 88899999999999999998765531 22236778888887 88999999999887776653 3
Q ss_pred CCCCHHHHHHHHHHHh
Q psy15936 635 VHVTQEDFEMAVAKVM 650 (665)
Q Consensus 635 ~~It~~d~~~Al~~~~ 650 (665)
..||.+.+.++++.+.
T Consensus 334 ~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 334 KIITIEIVSDLFRDIP 349 (450)
T ss_pred CCCCHHHHHHHHhhcc
Confidence 5799999999998764
No 126
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.1e-11 Score=132.82 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=139.6
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
..+...+.+|+++.|.+..++.+.+.+.. | ..+.++|||||||+|||++|+++++.+.++.....+.+
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45667788999999999999999887754 1 34568999999999999999999998865321111100
Q ss_pred hh------hhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 449 LV------QKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 449 l~------~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
+. ..........++.++..+.. ..+.++++||+|.+.. . .+..++..++......
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~---~~~~ll~~le~~~~~~- 139 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------A---AFNAFLKTLEEPPAHA- 139 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------H---HHHHHHHHHhCCCCce-
Confidence 00 00011122445566654432 2356999999996532 1 2344544444322111
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT 598 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~ 598 (665)
.+|++|+.+..+.+++.+ |+ ..++|++|+.++...++...+...++.
T Consensus 140 ------------------------------~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 140 ------------------------------IFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred ------------------------------EEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 467777778888899988 66 368999999999999999888776653
Q ss_pred -CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 599 -RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 599 -~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
++..++.++..+.| +.+.+.+.++....++. .. ||.+++...+
T Consensus 187 i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~~---~~-it~~~v~~~~ 230 (367)
T PRK14970 187 FEDDALHIIAQKADG-ALRDALSIFDRVVTFCG---KN-ITRQAVTENL 230 (367)
T ss_pred CCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC---CC-CCHHHHHHHh
Confidence 23347777877765 67777777776654432 22 6776666554
No 127
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.34 E-value=2.1e-11 Score=145.85 Aligned_cols=203 Identities=20% Similarity=0.298 Sum_probs=140.4
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCce
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 441 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~l 441 (665)
...+..++.+.|.+.+++++.+.+.. ....+++|+||||||||++|+.+|..+ +..+
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~ 232 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL 232 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeE
Confidence 34456677889999988887666543 345678999999999999999999876 5667
Q ss_pred EEEechhhh--hhhhccchHHHHHHHHHHHhc-CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 442 IRVSGSELV--QKFIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 442 irv~~~dl~--~~~~g~~~~~~~~if~~a~~~-~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
+.++...+. ..|.|..+..+..+|..+... .+.|+||||++.+.+..... +..+..+.+...+. ...
T Consensus 233 ~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~l~-------~g~ 302 (852)
T TIGR03346 233 LALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPALA-------RGE 302 (852)
T ss_pred EEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchhhh-------cCc
Confidence 777766654 356777788888888887553 58899999999987643211 11222222222111 111
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR 593 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~ 593 (665)
+ .+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+..
T Consensus 303 i-----------------------------~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 303 L-----------------------------HCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred e-----------------------------EEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHH
Confidence 2 5888887664 47999999 996 689999999999999998876
Q ss_pred cCCCCCCC-----CHHHHHHHCCCCC-----HHHHHHHHHHHHHHH
Q psy15936 594 KMNLTRGI-----NLRKIAELMPGAS-----GAEVKGVCTEAGMYA 629 (665)
Q Consensus 594 ~~~~~~~v-----dl~~la~~t~g~s-----~~dl~~l~~~A~~~A 629 (665)
.+.....+ .+..++..+.+|- |.-.-.++.+|+..+
T Consensus 351 ~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 351 RYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred HhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 65543332 3455566665543 445556777766544
No 128
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.6e-11 Score=137.36 Aligned_cols=211 Identities=22% Similarity=0.358 Sum_probs=141.2
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE---e
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV---S 445 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv---~ 445 (665)
+.+...+.+|+++.|++..++.++..+.. -..+..+||+||+|+|||++|+.+|..+.+.-... .
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 45667888999999999999999888854 13345689999999999999999999886532100 1
Q ss_pred chhhhh------h---hhc---cchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 446 GSELVQ------K---FIG---EGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 446 ~~dl~~------~---~~g---~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
|..... . ..+ .+...++.+...+.. ....|++|||+|.+.. .. +..|+..
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A---~NALLKt 141 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SA---FNALLKT 141 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HH---HHHHHHH
Confidence 111000 0 001 123335566555442 3457999999997632 22 4445555
Q ss_pred hcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHH
Q psy15936 510 LDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILR 589 (665)
Q Consensus 510 ~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~ 589 (665)
++..... + .+|++|+.++.+.+.+++ |+ ..+.|.+|+.++....++
T Consensus 142 LEEPP~~--t-----------------------------ifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~ 187 (725)
T PRK07133 142 LEEPPKH--V-----------------------------IFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLE 187 (725)
T ss_pred hhcCCCc--e-----------------------------EEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHH
Confidence 4443221 1 477788888999999998 87 489999999999999999
Q ss_pred HhhccCCCCCCC-CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 590 IHSRKMNLTRGI-NLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 590 ~~l~~~~~~~~v-dl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
..+...++.-+. .+..+|..+.| +.+++..++..+..+. ...|+.+++.+
T Consensus 188 ~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~~y~----~~~It~e~V~e 238 (725)
T PRK07133 188 FILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVSIFG----NNKITLKNVEE 238 (725)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 887766654322 26678888776 7788888887765432 22366666554
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.7e-11 Score=135.74 Aligned_cols=204 Identities=19% Similarity=0.201 Sum_probs=135.9
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|++..++.++.++.. | ..+..+||+||+|||||++|+.+|..+.+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 456788999999999999999888854 1 234457999999999999999999987642
Q ss_pred ----------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 441 ----------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 441 ----------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
++.+++.. ..+...++++...+. .....|++|||++.+.. ..
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A- 134 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AG- 134 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HH-
Confidence 11222111 011223344433322 23457999999997632 23
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
.+.|+..++..... + .+|++|+.+..+.+.+++ |+ ..+.|..++
T Consensus 135 --~NALLK~LEEpp~~--~-----------------------------~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~ 178 (584)
T PRK14952 135 --FNALLKIVEEPPEH--L-----------------------------IFIFATTEPEKVLPTIRS--RT-HHYPFRLLP 178 (584)
T ss_pred --HHHHHHHHhcCCCC--e-----------------------------EEEEEeCChHhhHHHHHH--hc-eEEEeeCCC
Confidence 44455555443222 1 477777888899999998 75 689999999
Q ss_pred HHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 581 EEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
.++..+.+..++...++.-+ ..+..++..+.| +.+++.+++..+..++. ...||.+++..
T Consensus 179 ~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~aln~Ldql~~~~~---~~~It~~~v~~ 239 (584)
T PRK14952 179 PRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDTLSVLDQLLAGAA---DTHVTYQRALG 239 (584)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhccC---CCCcCHHHHHH
Confidence 99999999988887665422 235666666665 78888888887654321 23455555443
No 130
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2e-11 Score=137.83 Aligned_cols=205 Identities=17% Similarity=0.285 Sum_probs=136.7
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC---------
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--------- 439 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--------- 439 (665)
+.+...+..|+++.|.+..++.+..++.. -..+.++||+||+|+|||++|+++|+.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45667888999999999999999887743 133467999999999999999999998753
Q ss_pred ---------------ceEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 440 ---------------TFIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 440 ---------------~lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
.++.+++.. ......++.+...+.. ....|++|||+|.+.. ..+
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~ 136 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAW 136 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHH
Confidence 122222211 0122334555544332 2346999999997632 223
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
+.|...++. .... . .+|++|+.+..+.+++++ |+ ..++|++|+
T Consensus 137 NaLLKtLEE---Pp~~--t-----------------------------vfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls 179 (605)
T PRK05896 137 NALLKTLEE---PPKH--V-----------------------------VFIFATTEFQKIPLTIIS--RC-QRYNFKKLN 179 (605)
T ss_pred HHHHHHHHh---CCCc--E-----------------------------EEEEECCChHhhhHHHHh--hh-hhcccCCCC
Confidence 334444433 2211 1 477788888999999998 77 479999999
Q ss_pred HHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 581 EEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
.++....++..+...+.. ++..+..++..+.| +.+++.+++..+..++ + ..|+.+++..
T Consensus 180 ~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~e 239 (605)
T PRK05896 180 NSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINK 239 (605)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHH
Confidence 999999999888765543 22236777888776 6788778777754332 1 1266665554
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.5e-11 Score=137.71 Aligned_cols=205 Identities=18% Similarity=0.215 Sum_probs=135.2
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+..|+++.|++..++.++.++.. + .-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 3456788999999999999999887753 1 224579999999999999999999988652
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHH----HhcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a----~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.+++..- .....++.+...+ ......|++|||+|.+.. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a-- 135 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EA-- 135 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HH--
Confidence 333332210 0112223322222 123457999999997632 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
+..|+..++..... + .+|++|+.+..+.+.+++ |+ ..+.|++++.
T Consensus 136 -~naLLk~LEEP~~~--~-----------------------------ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~ 180 (624)
T PRK14959 136 -FNALLKTLEEPPAR--V-----------------------------TFVLATTEPHKFPVTIVS--RC-QHFTFTRLSE 180 (624)
T ss_pred -HHHHHHHhhccCCC--E-----------------------------EEEEecCChhhhhHHHHh--hh-hccccCCCCH
Confidence 34455544433221 1 478888888888888888 77 4789999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
++...+++..+...++. ++..+..|+..+.| +.+++.+++..+. + .+...|+.+++..+
T Consensus 181 ~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~ 240 (624)
T PRK14959 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGV 240 (624)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHH
Confidence 99999999888766543 22236777887776 5677767766542 2 23346777765433
No 132
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.32 E-value=6.4e-11 Score=120.18 Aligned_cols=176 Identities=14% Similarity=0.206 Sum_probs=119.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
....+++|+||+|||||+||+++++.+ +..++.+++.+..... . .....+++++||++.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~------------~--~~~~~~~liiDdi~~l~~- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF------------D--FDPEAELYAVDDVERLDD- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH------------h--hcccCCEEEEeChhhcCc-
Confidence 456789999999999999999999875 5677888877653221 1 113457999999996522
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---CCCccc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---ILDPAL 564 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---~Ld~aL 564 (665)
..+..+..+++..... .. ..++.+++.+. .+.+.+
T Consensus 105 ----------~~~~~L~~~~~~~~~~---~~-----------------------------~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 105 ----------AQQIALFNLFNRVRAH---GQ-----------------------------GALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------hHHHHHHHHHHHHHHc---CC-----------------------------cEEEEeCCCCHHhCCCCHHH
Confidence 2344455555443221 00 02455554321 345667
Q ss_pred cCCCCe--eEEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q psy15936 565 LRPGRI--DRKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 641 (665)
Q Consensus 565 lr~gRf--d~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d 641 (665)
++ || ...+.+++|+.+++..++..++...++.-+ .-++.|+....| +.+++..+++.....|...+ ..||...
T Consensus 143 ~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~-~~i~~~~ 218 (227)
T PRK08903 143 RT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK-RPVTLPL 218 (227)
T ss_pred HH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 66 66 469999999999999999887765544322 236778887766 88999999998666565544 5899988
Q ss_pred HHHHHH
Q psy15936 642 FEMAVA 647 (665)
Q Consensus 642 ~~~Al~ 647 (665)
+.+++.
T Consensus 219 ~~~~l~ 224 (227)
T PRK08903 219 LREMLA 224 (227)
T ss_pred HHHHHh
Confidence 888764
No 133
>KOG2028|consensus
Probab=99.32 E-value=3.7e-11 Score=124.58 Aligned_cols=209 Identities=27% Similarity=0.392 Sum_probs=135.1
Q ss_pred ccCCCCCccccCCChHHHHH---HHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---eEEE
Q psy15936 371 EKVPDSTYEMVGGLDNQIKE---IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRV 444 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~---l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv 444 (665)
+...+...+++.|++..+-+ ++.+|+ ...-.+++||||||||||+||+.++.....+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ie-------------q~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIE-------------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHH-------------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 44566777788787654432 233332 2455689999999999999999999987655 4444
Q ss_pred echhhhhhhhccchHHHHHHHHHHHh-----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 445 SGSELVQKFIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 445 ~~~dl~~~~~g~~~~~~~~if~~a~~-----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
+... .....++.+|+.++. ....|+|||||+++.... |.++.-.+
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ-----------QD~fLP~V------------ 246 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ-----------QDTFLPHV------------ 246 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh-----------hhccccee------------
Confidence 4332 234556788877653 345799999999764322 22221111
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEe--CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC--
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT--NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM-- 595 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT--n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~-- 595 (665)
+++-..+|++| |+.-.++.+|++ |+ +++.+..++.+....||.+-..-+
T Consensus 247 ------------------------E~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 247 ------------------------ENGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred ------------------------ccCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhcc
Confidence 11112567666 666679999999 66 468899999999999998744311
Q ss_pred ------CCCC------CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHH
Q psy15936 596 ------NLTR------GINLRKIAELMPGASGAEVKGVCTEAGMYALRER---RVHVTQEDFEMAVAKV 649 (665)
Q Consensus 596 ------~~~~------~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~---~~~It~~d~~~Al~~~ 649 (665)
++.. +--++.++..++|-..+.+..+--.+.+...+++ +..++.+|+.+++.+-
T Consensus 300 ser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 300 SERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred ccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 1211 1126788888888666666554444445555554 4579999999888654
No 134
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1.8e-11 Score=133.54 Aligned_cols=189 Identities=20% Similarity=0.292 Sum_probs=121.0
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE-Eec---------
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR-VSG--------- 446 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir-v~~--------- 446 (665)
.|++++|++..++.++.++..+... +...+...+.++||+||+|+|||++|+++|..+.+.--. ..|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5788999999999999999764332 222344456789999999999999999999977443100 000
Q ss_pred -----hhhhhhh---hccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCc
Q psy15936 447 -----SELVQKF---IGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 514 (665)
Q Consensus 447 -----~dl~~~~---~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~ 514 (665)
+|+..-. .......++.++..+.. ...+|++|||+|.+.. ..++. |+..++..+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aana---LLk~LEep~ 145 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANA---LLKAVEEPP 145 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHH---HHHHhhcCC
Confidence 1110000 00122345667766543 2346999999998633 22333 444444332
Q ss_pred ccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 515 ATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 515 ~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
... .+|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 146 ~~~-------------------------------~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~--- 188 (394)
T PRK07940 146 PRT-------------------------------VWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR--- 188 (394)
T ss_pred CCC-------------------------------eEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---
Confidence 211 366666668999999998 77 68999999999987777632
Q ss_pred CCCCCCCCHHHHHHHCCCCCHHHHHH
Q psy15936 595 MNLTRGINLRKIAELMPGASGAEVKG 620 (665)
Q Consensus 595 ~~~~~~vdl~~la~~t~g~s~~dl~~ 620 (665)
.++. ......++..+.|..++.+..
T Consensus 189 ~~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 189 DGVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 2333 223567888888876655443
No 135
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=3.7e-11 Score=143.35 Aligned_cols=202 Identities=23% Similarity=0.311 Sum_probs=143.1
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceE
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFI 442 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~li 442 (665)
.....++.+.|.+++++++.+.+.. ....+++|+||||||||++|+.+|..+ +..++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3345677899999999999887754 356689999999999999999999876 36788
Q ss_pred EEechhhh--hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccc
Q psy15936 443 RVSGSELV--QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520 (665)
Q Consensus 443 rv~~~dl~--~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~ 520 (665)
.++...+. ..|.|+.+..++.++..+....+.|+|||||+.+.+..... ++.+..+.+...+.. ..+
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l~r-------g~l- 308 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPALAR-------GEL- 308 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHHhC-------CCc-
Confidence 88887765 35678888889999998887778999999999987654221 112333333322221 112
Q ss_pred cccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc-
Q psy15936 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK- 594 (665)
Q Consensus 521 ~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~- 594 (665)
.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++.....
T Consensus 309 ----------------------------~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~ 357 (821)
T CHL00095 309 ----------------------------QCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRY 357 (821)
T ss_pred ----------------------------EEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHH
Confidence 5888887654 36899999 996 6899999999999998754432
Q ss_pred ---CCCC-CCCCHHHHHHHCCCCC-----HHHHHHHHHHHHHHH
Q psy15936 595 ---MNLT-RGINLRKIAELMPGAS-----GAEVKGVCTEAGMYA 629 (665)
Q Consensus 595 ---~~~~-~~vdl~~la~~t~g~s-----~~dl~~l~~~A~~~A 629 (665)
.++. .+.-+..++..+.+|. |.-.-.++.+|+...
T Consensus 358 e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 358 EKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred HHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHH
Confidence 2222 2222666677776654 445556777766544
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.31 E-value=4.5e-11 Score=124.14 Aligned_cols=200 Identities=23% Similarity=0.292 Sum_probs=120.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh------hhhhhhccchHHH-HH-------------------HH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE------LVQKFIGEGSRMV-RE-------------------LF 465 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d------l~~~~~g~~~~~~-~~-------------------if 465 (665)
.+.+++|+||||||||++|+++|..++.++++++|.. +...+.+...... .. .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4568999999999999999999999999999997653 2222221111110 00 11
Q ss_pred HHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhc
Q psy15936 466 VMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEM 545 (665)
Q Consensus 466 ~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~ 545 (665)
..+. ..+.++++|||+. ++++.+..|..+++.-. +...+ . + +.+.....+.+|
T Consensus 100 ~~A~-~~g~~lllDEi~r-----------~~~~~q~~Ll~~Le~~~-~~i~~-~-------~----~~~~~i~~~~~f-- 152 (262)
T TIGR02640 100 TLAV-REGFTLVYDEFTR-----------SKPETNNVLLSVFEEGV-LELPG-K-------R----GTSRYVDVHPEF-- 152 (262)
T ss_pred HHHH-HcCCEEEEcchhh-----------CCHHHHHHHHHHhcCCe-EEccC-C-------C----CCCceEecCCCC--
Confidence 1122 2346999999996 34567777777775311 00000 0 0 000000011122
Q ss_pred cccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHH---H---C---C
Q psy15936 546 AVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE---L---M---P 611 (665)
Q Consensus 546 a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~---~---t---~ 611 (665)
+||+|+|+.. .+++++++ || ..+.++.|+.++..+|++.++. +... ..+.+.. . . .
T Consensus 153 ---rvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~ 222 (262)
T TIGR02640 153 ---RVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEI 222 (262)
T ss_pred ---EEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCcc
Confidence 6899999763 46889998 88 6899999999999999998752 2211 1222211 1 1 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
..+.|..-.+++.+. ....+..++++||.+.+..++.
T Consensus 223 ~~~~r~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 223 TSGLRASLMIAEVAT---QQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCcHHHHHHHHHHHH---HcCCCCCCCcHHHHHHHHHHhc
Confidence 234444444444444 3455778999999998887764
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=4.5e-11 Score=140.77 Aligned_cols=189 Identities=20% Similarity=0.198 Sum_probs=129.2
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|++.+++.|+.++.. -..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 566788999999999999999888753 1233458999999999999999999998642
Q ss_pred ----------------eEEEechhhhhhhhccchHHHHHHHHHH----HhcCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 441 ----------------FIRVSGSELVQKFIGEGSRMVRELFVMA----REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 441 ----------------lirv~~~dl~~~~~g~~~~~~~~if~~a----~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
++.++... ......++.+...+ .....+|+||||+|.|.. ..+
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 11221111 00122233332222 234567999999998633 334
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
+.|..+++ ..... + .+|++|+.++.|.+.|++ |+ ..+.|..++
T Consensus 138 NaLLK~LE---EpP~~--~-----------------------------~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~ 180 (824)
T PRK07764 138 NALLKIVE---EPPEH--L-----------------------------KFIFATTEPDKVIGTIRS--RT-HHYPFRLVP 180 (824)
T ss_pred HHHHHHHh---CCCCC--e-----------------------------EEEEEeCChhhhhHHHHh--he-eEEEeeCCC
Confidence 44444444 33221 1 477777888888889988 76 589999999
Q ss_pred HHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHH
Q psy15936 581 EEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAG 626 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~ 626 (665)
.++...+|...+...++..+ ..+..|+..+.| +.+++.+++...+
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999998877665422 235667777766 7788887777655
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.5e-11 Score=132.63 Aligned_cols=212 Identities=21% Similarity=0.275 Sum_probs=138.3
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE------
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI------ 442 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li------ 442 (665)
+.+...+..|+++.|++..++.++.++.. -..+..+||+||+|+|||++|+.+|..+++.--
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 34567788999999999999999888854 123445789999999999999999998864100
Q ss_pred --EEechhhhh-------hh---hccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 443 --RVSGSELVQ-------KF---IGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 443 --rv~~~dl~~-------~~---~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
..+|..+.. .+ .......++.+...+.. ..+.|+++||+|.+.. .. +..|
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a---~naL 139 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EA---FNAL 139 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HH---HHHH
Confidence 001100000 00 00112234444444332 2357999999997632 22 3444
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHH
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLD 586 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~ 586 (665)
+..++...... .+|.+|+.++.+.+++++ |+ ..+.|++|+.++...
T Consensus 140 Lk~LEepp~~~-------------------------------v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~ 185 (486)
T PRK14953 140 LKTLEEPPPRT-------------------------------IFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKE 185 (486)
T ss_pred HHHHhcCCCCe-------------------------------EEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHH
Confidence 54444332111 466667777888888888 77 479999999999999
Q ss_pred HHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 587 ILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 587 Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
.+..+++..++.-+ ..+..++..+.| +.+++.++++.+..++ ...+|.+++..+
T Consensus 186 ~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~~----~~~It~~~V~~~ 240 (486)
T PRK14953 186 YLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTYG----EGKVTIKVVEEF 240 (486)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHH
Confidence 99998887765432 236677777776 6788888888776442 335776666653
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=5.4e-11 Score=136.26 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=138.8
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|++..++.++..+.. | ..+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 456788999999999999999888754 1 345568999999999999999999987642
Q ss_pred --------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 441 --------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 441 --------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
++.+++.. ......++.+...+.. ....|++|||+|.+.. ..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a--- 135 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NA--- 135 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HH---
Confidence 22222211 1112334555544332 2346999999997632 22
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
.+.|+..++..... + .+|++|+.++.|.+.+++ |+ ..+.|..++.+
T Consensus 136 ~naLLk~LEepp~~--~-----------------------------~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (576)
T PRK14965 136 FNALLKTLEEPPPH--V-----------------------------KFIFATTEPHKVPITILS--RC-QRFDFRRIPLQ 181 (576)
T ss_pred HHHHHHHHHcCCCC--e-----------------------------EEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHH
Confidence 34444444433221 1 578888888999999998 76 47899999999
Q ss_pred HHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 583 er~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
+....+...++..++. ++..+..++..+.| +.+++.+++..+..+.- ..|+.+|+..
T Consensus 182 ~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay~g----~~It~edV~~ 239 (576)
T PRK14965 182 KIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAFCG----DAVGDDDVAE 239 (576)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHH
Confidence 9998888888776654 22347778888876 77888888876654431 2466666544
No 140
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.28 E-value=5e-11 Score=130.67 Aligned_cols=251 Identities=22% Similarity=0.283 Sum_probs=140.2
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHh--hCC-CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDA--LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG 455 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~--~g~-~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g 455 (665)
.+.|++.+++.+..++..+......... ... .+..++||+||||||||++|+++|..++.+|+++++..+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3789999999886665321111100000 011 13468999999999999999999999999999999987643 3555
Q ss_pred cchHH-HHHHHHH----HHhcCCeEEEEcCccccccCCcCCCC---CCChHHHHHHHHHHHhhcC-C---ccc-------
Q psy15936 456 EGSRM-VRELFVM----AREHAPSIIFMDEIDSIGSSRIESGS---GGDSEVQRTMLELLNQLDG-F---EAT------- 516 (665)
Q Consensus 456 ~~~~~-~~~if~~----a~~~~p~VlliDEID~l~~~~~~~~~---~~~~~~~~~l~~Ll~~~d~-~---~~~------- 516 (665)
.+... +..++.. .....++++||||||++......+.. -+...+|+.|.++++.... . .+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 54332 3333332 12346789999999999776322211 1123577777777753210 0 000
Q ss_pred -----Cccccccccc--hhhhhhhhhcccchhhhhccccE--------EEEEeCCCC-----CCCccccCCCCeeEEEEe
Q psy15936 517 -----KNIKGVCTEA--GMYALRERRVHVTQEDFEMAVAK--------VIMATNRID-----ILDPALLRPGRIDRKIEF 576 (665)
Q Consensus 517 -----~~i~~vc~eA--g~~air~~r~~v~~~df~~a~~~--------VIatTn~~~-----~Ld~aLlr~gRfd~~I~~ 576 (665)
.++--+|.-| |+..+-.+|.....-.|...... -+...-.|+ .+.|+|+. |+|.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeec
Confidence 1122223222 33333333322111112110000 000000011 25678876 99999999
Q ss_pred CCCCHHHHHHHHHH----hhc-------cCCCCCCC---CHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHh
Q psy15936 577 PPPNEEARLDILRI----HSR-------KMNLTRGI---NLRKIAEL--MPGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 577 ~~P~~eer~~Il~~----~l~-------~~~~~~~v---dl~~la~~--t~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
.+++.++..+|+.. .++ ..++.-.+ -++.|++. ..++-.|.|+.+++....-.+.+
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999999999972 222 12222111 25667765 33455678888887776666554
No 141
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.28 E-value=8.7e-13 Score=152.87 Aligned_cols=240 Identities=15% Similarity=0.201 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccC
Q psy15936 265 VAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIND 337 (665)
Q Consensus 265 ~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~ 337 (665)
+...+.++.+++..++++.+.+..+ ..++.+...+...++++ |||+|||.++++ +.+..|+...++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 4455677778888999998887774 45777787777777776 999999999886 445678888888888888
Q ss_pred CCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHH-HHHHhhcCCCchhHHHhhCCCCCceE
Q psy15936 338 VTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKE-IKEVIELPVKHPELFDALGIAQPKGV 416 (665)
Q Consensus 338 ~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~-l~~~l~l~l~~~d~f~~~g~~~~~~v 416 (665)
.+.+...+ +.+|..+....||++|+|++|.++..+....+|......+ +..++ ...| |+....++
T Consensus 226 ~g~~~~~~-----~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL----~~md-----g~~~~~~v 291 (644)
T PRK10733 226 VGVGASRV-----RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQML----VEMD-----GFEGNEGI 291 (644)
T ss_pred hcccHHHH-----HHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHH----Hhhh-----cccCCCCe
Confidence 88777655 7788888888999999999999988776555554443333 33332 2222 44556778
Q ss_pred EEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 417 LL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
++.| +++.++.+++++.|+++++....++.++...+..|+.......| +-.++|
T Consensus 292 ivIa---------aTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~---l~~~~d-------------- 345 (644)
T PRK10733 292 IVIA---------ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---LAPDID-------------- 345 (644)
T ss_pred eEEE---------ecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC---CCCcCC--------------
Confidence 8888 88889999999999999999888888888888888887554433 222333
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEE
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIa 552 (665)
+..+.+.+.|+++++ +.++|.+|+..|.|.++..++..||+.+..++..
T Consensus 346 ------~~~la~~t~G~sgad-l~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 346 ------AAIIARGTPGFSGAD-LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ------HHHHHhhCCCCCHHH-HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 556788899999988 9999999999999999999999999988765544
No 142
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.1e-10 Score=130.96 Aligned_cols=202 Identities=21% Similarity=0.260 Sum_probs=137.2
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------- 439 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~----------- 439 (665)
+...+.+|+++.|++..++.++..+.. | .-+..+||+||+|+|||++|+++|+.+.+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 456788999999999999999887753 1 34456799999999999999999998732
Q ss_pred -------------ceEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 440 -------------TFIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 440 -------------~lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
.++.++..+- .....++.+...... ....|++|||+|.+.. +.++
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~N- 135 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFN- 135 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHH-
Confidence 1222222110 012344555443221 2246999999997632 3334
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
.|+..++..+.. . .+|.+|+.+..+.+++++ |+ ..++|.+++.+
T Consensus 136 --ALLK~LEEpp~~--t-----------------------------~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ 179 (535)
T PRK08451 136 --ALLKTLEEPPSY--V-----------------------------KFILATTDPLKLPATILS--RT-QHFRFKQIPQN 179 (535)
T ss_pred --HHHHHHhhcCCc--e-----------------------------EEEEEECChhhCchHHHh--hc-eeEEcCCCCHH
Confidence 444444433211 1 467777778999999998 75 58999999999
Q ss_pred HHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 643 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 643 (665)
+....+...+...++.- +..+..++..+.| +.+++.+++..|..++ ...||.+++.
T Consensus 180 ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~ 236 (535)
T PRK08451 180 SIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVA 236 (535)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHH
Confidence 99999988887766542 2346778888776 8899999998877654 2235555444
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=2e-10 Score=127.93 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=134.7
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
+...+.+|+++.|.+..++.++..+.. -..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 455678999999999999999888754 1345678999999999999999999987432
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.+++... .+...++.+.+... .....|+++||+|.+.. ..
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~-- 137 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EA-- 137 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HH--
Confidence 222322110 01122333333222 23467999999997632 22
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
...|+..++...+. . .+|++|+.+..+.+++++ |+ ..++|++++.
T Consensus 138 -~n~LLk~lEep~~~--~-----------------------------~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~ 182 (451)
T PRK06305 138 -FNSLLKTLEEPPQH--V-----------------------------KFFLATTEIHKIPGTILS--RC-QKMHLKRIPE 182 (451)
T ss_pred -HHHHHHHhhcCCCC--c-----------------------------eEEEEeCChHhcchHHHH--hc-eEEeCCCCCH
Confidence 34455555443221 1 477778888889999998 77 4799999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
++....+...++..+.. ++..+..|+..+.| +.+++.+.+.....+. ...|+.+++.++
T Consensus 183 ~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~~~----~~~It~~~V~~l 242 (451)
T PRK06305 183 ETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVGLF----PKSLDPDSVAKA 242 (451)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHHH
Confidence 99999998887766543 22346778888776 6677766666554331 133666665443
No 144
>KOG1969|consensus
Probab=99.26 E-value=1.7e-10 Score=128.92 Aligned_cols=232 Identities=18% Similarity=0.264 Sum_probs=142.7
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHH-------------------h----hCCCCCceEEEeCCCCCh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFD-------------------A----LGIAQPKGVLLYGPPGTG 425 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~-------------------~----~g~~~~~~vLL~GppGtG 425 (665)
|+|...+..|.++.|-+.+-+.+..++.. ..+..|. + .+-++.+.+||+||||-|
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 45666666666776666666665555542 1222222 1 122333568999999999
Q ss_pred HHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 426 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 426 KT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
|||||+-+|++.|..++.++++|-...- .-...+..+.+... ...|..+++|||| |+....-+
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEID-----------Ga~~~~Vd 405 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEID-----------GAPRAAVD 405 (877)
T ss_pred hhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEeccc-----------CCcHHHHH
Confidence 9999999999999999999999743211 01111112222111 1358889999999 34445566
Q ss_pred HHHHHHHhhcCC-cccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 502 TMLELLNQLDGF-EATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 502 ~l~~Ll~~~d~~-~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
++..++...... .|.. |+-..-|++ +-+..--+.||+.||.. .-|+|+.---|.+.|.|.+|.
T Consensus 406 vilslv~a~~k~~~Gkq--------~~~~~~rkk------kr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 406 VILSLVKATNKQATGKQ--------AKKDKKRKK------KRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred HHHHHHHhhcchhhcCc--------ccchhhhhh------hccccccCCEEEEecCc--cchhhhhcccceEEEEecCCC
Confidence 666666532211 1111 111111111 11223334699999964 457775322588899999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy15936 581 EEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR 634 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~ 634 (665)
..-..+-|+.++...++. +|...|+..++ ++..||+.+++.-...|.+..+
T Consensus 470 ~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 470 QSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred hhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhccc
Confidence 988888888888776665 44555655555 4557999999998888876543
No 145
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.26 E-value=2.5e-10 Score=123.39 Aligned_cols=202 Identities=19% Similarity=0.342 Sum_probs=143.1
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcccccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~ 486 (665)
....++||||.|+|||+|+.|+++.. +..++++...++...++......-..-|+... .-++++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45679999999999999999998865 24677888888776665554443344555544 457999999998765
Q ss_pred CCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-CCCCC---CCc
Q psy15936 487 SRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT-NRIDI---LDP 562 (665)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT-n~~~~---Ld~ 562 (665)
+. ..+..+..+++.+-.... .+|.|+ ..|.. +.+
T Consensus 190 k~---------~~qeefFh~FN~l~~~~k---------------------------------qIvltsdr~P~~l~~~~~ 227 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGK---------------------------------QIVLTSDRPPKELNGLED 227 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCC---------------------------------EEEEEcCCCchhhccccH
Confidence 43 234444444443322111 245555 55554 458
Q ss_pred cccCCCCeeE--EEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy15936 563 ALLRPGRIDR--KIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 639 (665)
Q Consensus 563 aLlr~gRfd~--~I~~~~P~~eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~ 639 (665)
.|++ ||.+ .+.+.+|+.+.|..|++..+...++.- +.-...++..... +.+++..++.....+|...++ .||.
T Consensus 228 rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi 303 (408)
T COG0593 228 RLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITI 303 (408)
T ss_pred HHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcH
Confidence 8888 8877 888999999999999999777665542 2226778877764 789999999988888877665 8999
Q ss_pred HHHHHHHHHHhhhcchhhhchHhh
Q psy15936 640 EDFEMAVAKVMQKDSEKNMSIKKL 663 (665)
Q Consensus 640 ~d~~~Al~~~~~~~~~~~~~~~~~ 663 (665)
+.+.++++.+..... + ++..++
T Consensus 304 ~~v~e~L~~~~~~~~-~-itie~I 325 (408)
T COG0593 304 DLVKEILKDLLRAGE-K-ITIEDI 325 (408)
T ss_pred HHHHHHHHHhhcccc-c-CCHHHH
Confidence 999999988877655 4 555544
No 146
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.26 E-value=2e-13 Score=165.32 Aligned_cols=215 Identities=7% Similarity=0.002 Sum_probs=152.4
Q ss_pred HHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccC----------CCCCce--------------
Q psy15936 295 LLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDIND----------VTPNCR-------------- 343 (665)
Q Consensus 295 ~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~----------~~~~~~-------------- 343 (665)
...++|..+|+|+ |||||||+||+| +++..|+...++++..++ +|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 3467788999997 999999999998 556689999998888654 222211
Q ss_pred -----------EEeccc---chhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhC
Q psy15936 344 -----------VALRNE---SYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALG 409 (665)
Q Consensus 344 -----------~~l~~~---~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g 409 (665)
+..... -+.+|+.|+..+||++|+|+||+++...- ... .+..+ +..++++. +
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~l--tL~qL----LneLDg~~--~ 1766 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYL--SLGLL----VNSLSRDC--E 1766 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------cee--hHHHH----HHHhcccc--c
Confidence 000001 15689999999999999999999976411 100 11111 12222221 1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcC-ccccccCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDE-IDSIGSSR 488 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDE-ID~l~~~~ 488 (665)
.....+|++.| |+++++.+|++++|+++.|.......+....++.+|....... .+-+-++ +|
T Consensus 1767 ~~s~~~VIVIA---------ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-g~~L~~~~vd------ 1830 (2281)
T CHL00206 1767 RCSTRNILVIA---------STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-GFHLEKKMFH------ 1830 (2281)
T ss_pred cCCCCCEEEEE---------eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-CCCCCccccc------
Confidence 23456899999 9999999999999999999988777666666677666432111 1111111 12
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 489 IESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
+..+++.+.|++|+| +.++|.||++.|+++++..|..+++..|..++++..
T Consensus 1831 --------------l~~LA~~T~GfSGAD-LanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1831 --------------TNGFGSITMGSNARD-LVALTNEALSISITQKKSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred --------------HHHHHHhCCCCCHHH-HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh
Confidence 667889999999998 999999999999999999999999999988776544
No 147
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=2.8e-10 Score=130.10 Aligned_cols=212 Identities=19% Similarity=0.199 Sum_probs=142.8
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe----
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS---- 445 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~---- 445 (665)
-....+..|+++.|++..++.+..++.. -..+..+||+||+|+|||++|+.+|+.+.+......
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 3456678999999999999999887754 134568999999999999999999998865422111
Q ss_pred ---------chhhhh-------hh---hccchHHHHHHHHHHHhc----CCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 446 ---------GSELVQ-------KF---IGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 446 ---------~~dl~~-------~~---~g~~~~~~~~if~~a~~~----~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
|..+.. .+ .......++.+...+... ...|++|||+|.+.. ..
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a--- 148 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA--- 148 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH---
Confidence 100000 00 001233456666554322 357999999997632 22
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
++.|+..++...... .+|++|+.++.+.+.+++ |+ ..+.|..|+.+
T Consensus 149 ~naLLKtLEePp~~~-------------------------------~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~ 194 (598)
T PRK09111 149 FNALLKTLEEPPPHV-------------------------------KFIFATTEIRKVPVTVLS--RC-QRFDLRRIEAD 194 (598)
T ss_pred HHHHHHHHHhCCCCe-------------------------------EEEEEeCChhhhhHHHHh--he-eEEEecCCCHH
Confidence 444454444432221 467777777788888888 77 57999999999
Q ss_pred HHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+....++..++..+..-+ ..++.|+..+.| +.+++.+++..+..+. ...||.+++...+
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 999999988877665422 336677887776 7888888887765442 2357777776554
No 148
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=7.6e-11 Score=129.59 Aligned_cols=215 Identities=15% Similarity=0.226 Sum_probs=138.4
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE-------E
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI-------R 443 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li-------r 443 (665)
+...+..|+++.|++..++.++.++.. | .-+..+||+||||+|||++|+++|+.+.+.-. .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 456788999999999999998887753 1 34456999999999999999999998865210 0
Q ss_pred ---Eech------hhh-------hhhhc---cchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 444 ---VSGS------ELV-------QKFIG---EGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 444 ---v~~~------dl~-------~~~~g---~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
-.|. .+. ..+.+ .....++.+...+. .....++++||+|.+.. ..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----------~~- 143 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----------AA- 143 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------HH-
Confidence 0000 000 00111 11233444444432 12346999999997632 22
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
...|+..++...... .+|++|+.+..+.+++++ |+. .++|++++
T Consensus 144 --~~~LLk~LEep~~~t-------------------------------~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~ 187 (397)
T PRK14955 144 --FNAFLKTLEEPPPHA-------------------------------IFIFATTELHKIPATIAS--RCQ-RFNFKRIP 187 (397)
T ss_pred --HHHHHHHHhcCCCCe-------------------------------EEEEEeCChHHhHHHHHH--HHH-HhhcCCCC
Confidence 334444444332221 466677777788888887 663 79999999
Q ss_pred HHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q psy15936 581 EEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALR-ERRVHVTQEDFEMAV 646 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~-~~~~~It~~d~~~Al 646 (665)
.++....++..++..+.. ++..++.++..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 188 ~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 188 LEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 999998888888765543 22236778888776 778888888877655532 234467777776543
No 149
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.24 E-value=5.1e-10 Score=129.09 Aligned_cols=245 Identities=21% Similarity=0.282 Sum_probs=138.9
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCce
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 441 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~l 441 (665)
.+.+..|+++.|.+...+.+...+.. ..+.+++|+||||||||++|+.+.+.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 45577888999999988887665532 245679999999999999999998655 4578
Q ss_pred EEEechhhhh-------hhhccchH----HHHHHHHH----------HHhcCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 442 IRVSGSELVQ-------KFIGEGSR----MVRELFVM----------AREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 442 irv~~~dl~~-------~~~g~~~~----~~~~if~~----------a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
+.++|..+.. .+.+.... ..+..+.. .......++|+||++.+ +...+
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHH
Confidence 8898875420 11111000 00000100 01123569999999865 44566
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
..+..+++.-.-.-..+.+... .+....+++ ..........+..+.+||+.++.++++|++ ||. .+.|++++
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~-~~~~~~~ik----~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls 354 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPD-DPNVPKYIK----KLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLT 354 (615)
T ss_pred HHHHHHHhhCeEEeecceeccC-Ccccchhhh----hhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCC
Confidence 6666666542100000000000 000000000 000000011122333455778889999988 886 67899999
Q ss_pred HHHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHh
Q psy15936 581 EEARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRE--------RRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~--------~~~~It~~d~~~Al~~~~ 650 (665)
.++...|++.++...++.- +.-++.|+..+. .++...+++..+...+..+ ....|+.+|+.+++..-.
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 9999999999988665321 112445555443 4555555555554443222 224699999999987543
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.6e-10 Score=129.71 Aligned_cols=204 Identities=20% Similarity=0.278 Sum_probs=137.7
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------- 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------- 440 (665)
....+.+|+++.|++..++.++.++.. | ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 345678899999999999999888853 1 334569999999999999999999988642
Q ss_pred --------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 441 --------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 441 --------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
++.+++.. ......++++...+. .....+++|||++.+.. . .
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~---a 135 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------S---A 135 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------H---H
Confidence 12222110 011223444443322 23457999999997632 2 2
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
+..|+..++..... + .+|++|+.+..+.+++++ |+. .++|.+++.+
T Consensus 136 ~naLLK~LEepp~~--~-----------------------------vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~ 181 (563)
T PRK06647 136 FNALLKTIEEPPPY--I-----------------------------VFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLE 181 (563)
T ss_pred HHHHHHhhccCCCC--E-----------------------------EEEEecCChHHhHHHHHH--hce-EEEecCCCHH
Confidence 44555555543221 1 477777778889999998 774 7899999999
Q ss_pred HHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 583 er~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
+..+.++..+...++. ++..+..|+..+.| +.+++.+++..+..++ ...++.+++..+
T Consensus 182 el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~~----~~~It~e~V~~l 240 (563)
T PRK06647 182 KIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSK 240 (563)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHH
Confidence 9999999888766544 22336778888776 7888888887765432 234666655543
No 151
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.23 E-value=2.3e-10 Score=124.86 Aligned_cols=248 Identities=21% Similarity=0.280 Sum_probs=138.1
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHh-------hCC-CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDA-------LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~-------~g~-~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
.+.|+++.++.+..++.. |-..... .+. ....++||+||||||||++|+++|..++.+|..+++..+..
T Consensus 78 ~ViGQe~A~~~l~~av~~---h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYN---HYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred eecCHHHHHHHHHHHHHH---HHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 478999999988666521 1111110 001 12358999999999999999999999999999888877542
Q ss_pred -hhhccch-HHHHHHHHHH----HhcCCeEEEEcCccccccCCcCCCC---CCChHHHHHHHHHHHhhc-----C----C
Q psy15936 452 -KFIGEGS-RMVRELFVMA----REHAPSIIFMDEIDSIGSSRIESGS---GGDSEVQRTMLELLNQLD-----G----F 513 (665)
Q Consensus 452 -~~~g~~~-~~~~~if~~a----~~~~p~VlliDEID~l~~~~~~~~~---~~~~~~~~~l~~Ll~~~d-----~----~ 513 (665)
.|.|.+. ..+..++..+ ....++++|+||||++...+..+.. -....+++.|.++++..- . .
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~ 234 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKH 234 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccc
Confidence 3555542 3333333321 2245679999999998875422211 112257777777774211 0 0
Q ss_pred cccCccccccccc---------hhhhhhhhhcccchhhhhccccEEEEEe-C----------CCCCCCccccCCCCeeEE
Q psy15936 514 EATKNIKGVCTEA---------GMYALRERRVHVTQEDFEMAVAKVIMAT-N----------RIDILDPALLRPGRIDRK 573 (665)
Q Consensus 514 ~~~~~i~~vc~eA---------g~~air~~r~~v~~~df~~a~~~VIatT-n----------~~~~Ld~aLlr~gRfd~~ 573 (665)
+....+...+++. |+..+..++..-..-.|......--... . ....+.|+|+. |+|.+
T Consensus 235 ~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~I 312 (413)
T TIGR00382 235 PYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVI 312 (413)
T ss_pred cCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeE
Confidence 0111111112222 3222222221110001110000000000 0 01125688876 99999
Q ss_pred EEeCCCCHHHHHHHHHHh----hcc-------CCCCCCC---CHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHh
Q psy15936 574 IEFPPPNEEARLDILRIH----SRK-------MNLTRGI---NLRKIAELM--PGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 574 I~~~~P~~eer~~Il~~~----l~~-------~~~~~~v---dl~~la~~t--~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
+.|.+++.++..+|+... ++. .++.-.+ -++.|+... ..+-.|.|+.+++...+.+..+
T Consensus 313 v~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 313 ATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999999998752 221 1222111 256677753 3456788999998887777655
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3.9e-10 Score=129.19 Aligned_cols=215 Identities=16% Similarity=0.236 Sum_probs=137.9
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCce-------EE
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF-------IR 443 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l-------ir 443 (665)
+...+..|+++.|++..++.++.++.. -.-+.++||+||+|||||++|+.+|+.+.+.- .+
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 456678899999999999999887753 13445699999999999999999999986621 00
Q ss_pred ---Eec------hhhh-------hhhhc---cchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 444 ---VSG------SELV-------QKFIG---EGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 444 ---v~~------~dl~-------~~~~g---~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
-.| ..+. ..+.+ .....++.+...+. .....|++|||+|.+.. ..
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a- 143 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AA- 143 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HH-
Confidence 001 0000 00111 11234455544442 22356999999997632 22
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
...|+..++...... .+|++|+.+..+.+.+++ |+ ..++|.+++
T Consensus 144 --~naLLK~LEePp~~t-------------------------------v~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~ 187 (620)
T PRK14954 144 --FNAFLKTLEEPPPHA-------------------------------IFIFATTELHKIPATIAS--RC-QRFNFKRIP 187 (620)
T ss_pred --HHHHHHHHhCCCCCe-------------------------------EEEEEeCChhhhhHHHHh--hc-eEEecCCCC
Confidence 344555554432221 366667777888888888 66 579999999
Q ss_pred HHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Q psy15936 581 EEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALR-ERRVHVTQEDFEMAV 646 (665)
Q Consensus 581 ~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~-~~~~~It~~d~~~Al 646 (665)
.++....+...+...+.. ++..++.|+..+.| +.+++.+.+.....++.. .....|+.+++.+.+
T Consensus 188 ~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 188 LDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 999988888877765543 23347778888776 677777777766554421 223457766665543
No 153
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=1.8e-10 Score=115.96 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=107.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGS 493 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~ 493 (665)
..++||||||||||+|++++++..+..++. .... . ...+ ...+++++|||+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999987753322 1110 0 0111 233689999999431
Q ss_pred CCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCC--CCccccCCCCee
Q psy15936 494 GGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI--LDPALLRPGRID 571 (665)
Q Consensus 494 ~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~--Ld~aLlr~gRfd 571 (665)
...+..+++.+.... . ..+++++..|.. + ++|++ |+.
T Consensus 99 ------~~~lf~l~N~~~e~g-~-------------------------------~ilits~~~p~~l~l-~~L~S--Rl~ 137 (214)
T PRK06620 99 ------EPALLHIFNIINEKQ-K-------------------------------YLLLTSSDKSRNFTL-PDLSS--RIK 137 (214)
T ss_pred ------HHHHHHHHHHHHhcC-C-------------------------------EEEEEcCCCccccch-HHHHH--HHh
Confidence 123444444332211 0 135666555543 5 78888 875
Q ss_pred E--EEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 572 R--KIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 572 ~--~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
. .+.+.+|+.+++..+++..+...++. ++.-.+.|+....+ +.+.+..++......+...+ ..||...+.+++
T Consensus 138 ~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 138 SVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 4 79999999999999999888755443 22237888888876 78888888887654444433 578988887765
No 154
>KOG0741|consensus
Probab=99.22 E-value=4.5e-11 Score=128.97 Aligned_cols=140 Identities=25% Similarity=0.378 Sum_probs=93.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhh-ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGS 493 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~-g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~ 493 (665)
++||+||||+|||+||-.+|...+.||+.+-.++-+..+. ...-..+..+|..|++..-+++++|+|+.|.. ..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD-----~v 614 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD-----YV 614 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc-----cc
Confidence 5999999999999999999999999999987665433322 22234578999999998889999999998653 22
Q ss_pred CCChHHHHHHHH-HHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCC-ccccCCCCee
Q psy15936 494 GGDSEVQRTMLE-LLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD-PALLRPGRID 571 (665)
Q Consensus 494 ~~~~~~~~~l~~-Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld-~aLlr~gRfd 571 (665)
...+.+.+.+.+ |+-.+......+. +. .|++||.+.+.|. -.++. .|+
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~----------------kL------------li~~TTS~~~vL~~m~i~~--~F~ 664 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGR----------------KL------------LIFGTTSRREVLQEMGILD--CFS 664 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCc----------------eE------------EEEecccHHHHHHHcCHHH--hhh
Confidence 223344444443 3333333332221 11 4677776655443 23445 788
Q ss_pred EEEEeCCCCH-HHHHHHHH
Q psy15936 572 RKIEFPPPNE-EARLDILR 589 (665)
Q Consensus 572 ~~I~~~~P~~-eer~~Il~ 589 (665)
..+++|..+. ++..+++.
T Consensus 665 ~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 665 STIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred heeecCccCchHHHHHHHH
Confidence 8999997766 66666665
No 155
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.22 E-value=2e-10 Score=124.03 Aligned_cols=76 Identities=29% Similarity=0.548 Sum_probs=53.9
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhh-CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG 455 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~-g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g 455 (665)
.+.|++++++.+..++............+ +-.+|.++||+||||||||++|+++|..++.+|+.+++..+.. .|.|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 47899999999866664311111111111 1224689999999999999999999999999999999876653 3444
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.21 E-value=3.9e-10 Score=134.29 Aligned_cols=206 Identities=22% Similarity=0.359 Sum_probs=134.4
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCC---CCc-eEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIA---QPK-GVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV 450 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~---~~~-~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~ 450 (665)
-+.+.|++..++.+.+.+..+ ..|+. .|. .+||+||||||||.+|+++|..+ +..+++++++++.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 346889999999998888652 12322 333 48999999999999999999988 4688999988764
Q ss_pred hh------------hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 451 QK------------FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 451 ~~------------~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
.. |.|.... ..+....+.+.++|+++|||++ +++.+.+.+.++++...-.++...
T Consensus 637 ~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEiek-----------a~~~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 637 EAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEK-----------AHPDVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhh-----------cCHHHHHHHHHHhhcceeecCCCc
Confidence 33 2232221 1233444567889999999996 566778888887764321111000
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-----------------------------CCCCccccCCCC
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-----------------------------DILDPALLRPGR 569 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-----------------------------~~Ld~aLlr~gR 569 (665)
.-||.. ..||+|||.. ..+.|+|++ |
T Consensus 704 ---------------------~vd~~n--~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--R 758 (852)
T TIGR03345 704 ---------------------EIDFKN--TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--R 758 (852)
T ss_pred ---------------------EEeccc--cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--c
Confidence 011221 1466666531 125678888 9
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhhccC--------CCCCCCC---HHHHHHHCCC--CCHHHHHHHHHHHHHHHH
Q psy15936 570 IDRKIEFPPPNEEARLDILRIHSRKM--------NLTRGIN---LRKIAELMPG--ASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 570 fd~~I~~~~P~~eer~~Il~~~l~~~--------~~~~~vd---l~~la~~t~g--~s~~dl~~l~~~A~~~A~ 630 (665)
++ .|.|.+++.++..+|+...+... ++.-.++ .+.|+....+ +-.|.++.+++.-...++
T Consensus 759 i~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 759 MT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPEL 831 (852)
T ss_pred ee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 97 89999999999999998776542 2221122 5667776543 456788887777554443
No 157
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-09 Score=118.62 Aligned_cols=217 Identities=23% Similarity=0.370 Sum_probs=146.2
Q ss_pred cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-----eEEEechhhhhhh--
Q psy15936 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSELVQKF-- 453 (665)
Q Consensus 381 i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~-----lirv~~~dl~~~~-- 453 (665)
+.+-+++++++...+.- .+....|.+++++||||||||..++.+++++..+ +++++|......+
T Consensus 19 l~~Re~ei~~l~~~l~~---------~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAP---------ALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHH---------HhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 66788888888776543 2233456679999999999999999999988543 7899987653322
Q ss_pred -----------h--c-cchHHHHHHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 454 -----------I--G-EGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 454 -----------~--g-~~~~~~~~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
+ | +.......+++.... ...-|+++||+|.|..... ..+..|++..... .
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~-- 154 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--K-- 154 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--c--
Confidence 1 0 111122222222222 3456999999998866431 4566766655443 1
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---CCCCccccCCCCeeE-EEEeCCCCHHHHHHHHHHhhcc
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---DILDPALLRPGRIDR-KIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---~~Ld~aLlr~gRfd~-~I~~~~P~~eer~~Il~~~l~~ 594 (665)
. ...+|+.+|.. +.+++.+.+ ++.. .|.|++++.+|...|+....+.
T Consensus 155 ~---------------------------~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 155 V---------------------------KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred e---------------------------eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 1 11477777765 467888877 4433 6999999999999999987764
Q ss_pred C----CCCCCCCHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 595 M----NLTRGINLRKIA---ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 595 ~----~~~~~vdl~~la---~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
- .+++++ +..+| ....| ..+-...+|+.|+..|.+++...++.+|+..|...+-..
T Consensus 206 ~~~~~~~~~~v-l~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 206 GFSAGVIDDDV-LKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERD 268 (366)
T ss_pred hccCCCcCccH-HHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHH
Confidence 2 122222 33343 34444 566677899999999999999999999999996555443
No 158
>PRK05642 DNA replication initiation factor; Validated
Probab=99.20 E-value=5.2e-10 Score=114.21 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=117.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 489 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~ 489 (665)
...++|+||+|+|||+|++++++.+ +...++++..++.... ..+.+... ...++++||++.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC--
Confidence 4678999999999999999998754 5667777777665321 12222222 2368999999976432
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCC---CCccccC
Q psy15936 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI---LDPALLR 566 (665)
Q Consensus 490 ~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~---Ld~aLlr 566 (665)
+..+..+..+++...... . ..+++++..|.. ..+.+++
T Consensus 113 -------~~~~~~Lf~l~n~~~~~g-~-------------------------------~ilits~~~p~~l~~~~~~L~S 153 (234)
T PRK05642 113 -------ADWEEALFHLFNRLRDSG-R-------------------------------RLLLAASKSPRELPIKLPDLKS 153 (234)
T ss_pred -------hHHHHHHHHHHHHHHhcC-C-------------------------------EEEEeCCCCHHHcCccCccHHH
Confidence 233444656665432110 0 024444444433 3688888
Q ss_pred CCCee--EEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy15936 567 PGRID--RKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 643 (665)
Q Consensus 567 ~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 643 (665)
||. ..+.+.+|+.+++.++++..+...++. ++.-.+.|+....+ +.+.+..++..-...+...+ ..||..-+.
T Consensus 154 --Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~ 229 (234)
T PRK05642 154 --RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLK 229 (234)
T ss_pred --HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHH
Confidence 874 578889999999999999666554433 22237788888876 78888888887765555433 468877777
Q ss_pred HHH
Q psy15936 644 MAV 646 (665)
Q Consensus 644 ~Al 646 (665)
+++
T Consensus 230 ~~L 232 (234)
T PRK05642 230 ETL 232 (234)
T ss_pred HHh
Confidence 665
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.19 E-value=4e-10 Score=134.92 Aligned_cols=211 Identities=25% Similarity=0.338 Sum_probs=137.4
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCC----CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIA----QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL 449 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~----~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl 449 (665)
..+.+.|++..++.+.+.+... ..|+. +...+||+||+|||||++|+++|..+ +.++++++++++
T Consensus 563 l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 563 LHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY 634 (852)
T ss_pred hhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 3456889999999998888641 22332 33568999999999999999999987 468999998876
Q ss_pred hhh-----hhccchH-----HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 450 VQK-----FIGEGSR-----MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 450 ~~~-----~~g~~~~-----~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
... +.|.... ....+....+.+..+|+++|||++ +++.+++.+.++++.-.-.++.. .
T Consensus 635 ~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeiek-----------a~~~v~~~Ll~~l~~g~l~d~~g-~ 702 (852)
T TIGR03346 635 MEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEK-----------AHPDVFNVLLQVLDDGRLTDGQG-R 702 (852)
T ss_pred cccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEecccc-----------CCHHHHHHHHHHHhcCceecCCC-e
Confidence 332 1111100 012333444556678999999996 46678888888885432111100 0
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-------------------------CCCccccCCCCeeEEE
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-------------------------ILDPALLRPGRIDRKI 574 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-------------------------~Ld~aLlr~gRfd~~I 574 (665)
.-||.+ ..||+|||... .+.|.|+. |+|.++
T Consensus 703 --------------------~vd~rn--~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Ii 758 (852)
T TIGR03346 703 --------------------TVDFRN--TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIV 758 (852)
T ss_pred --------------------EEecCC--cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEE
Confidence 001111 15788887621 24567776 999999
Q ss_pred EeCCCCHHHHHHHHHHhhcc-------CCCCCCCC---HHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
Q psy15936 575 EFPPPNEEARLDILRIHSRK-------MNLTRGIN---LRKIAELMP--GASGAEVKGVCTEAGMYALR 631 (665)
Q Consensus 575 ~~~~P~~eer~~Il~~~l~~-------~~~~~~vd---l~~la~~t~--g~s~~dl~~l~~~A~~~A~~ 631 (665)
.|.+++.++..+|+...+.. .++...++ .+.|+.... .+..+.|+.+++......+.
T Consensus 759 vF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 759 VFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 99999999999999876642 22222222 456666532 46678999888887766544
No 160
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.19 E-value=4.1e-12 Score=141.83 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCC
Q psy15936 269 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPN 341 (665)
Q Consensus 269 ~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~ 341 (665)
+++++|++..++.+++.... ........|+.+|+|+ |||||||+++++ +.+..|+....+.+..+++|++
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes 303 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES 303 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH
Confidence 34455576777666654432 2344567888889987 999999999988 4455777777778888899988
Q ss_pred ceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHH-HHHhhcCCCchhHHHhhCCCCCceEEEeC
Q psy15936 342 CRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYG 420 (665)
Q Consensus 342 ~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l-~~~l~l~l~~~d~f~~~g~~~~~~vLL~G 420 (665)
.+.+ +.+|..+....||++|+|++|.+...+... |......++ ..++.+ ++ ....++++.|
T Consensus 304 e~~l-----~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~-------l~----~~~~~V~vIa 365 (489)
T CHL00195 304 ESRM-----RQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITW-------LS----EKKSPVFVVA 365 (489)
T ss_pred HHHH-----HHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHH-------Hh----cCCCceEEEE
Confidence 7766 888999999999999999999875532111 111222222 222221 11 1234677777
Q ss_pred CCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcC-CeEEEEcCccccccCCcCCCCCCChHH
Q psy15936 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRIESGSGGDSEV 499 (665)
Q Consensus 421 ppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~-p~VlliDEID~l~~~~~~~~~~~~~~~ 499 (665)
+++..+.++++++|.++++....+..++...+..+|+...... |. ..+++|
T Consensus 366 ---------TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~--~~~~~d----------------- 417 (489)
T CHL00195 366 ---------TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK--SWKKYD----------------- 417 (489)
T ss_pred ---------ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--cccccC-----------------
Confidence 7788889999999999999888888888899999998765432 21 122333
Q ss_pred HHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccE
Q psy15936 500 QRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549 (665)
Q Consensus 500 ~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~ 549 (665)
+..+....+||+|++ +..+|.+|...|..+.+. ++.+||..+...
T Consensus 418 ---l~~La~~T~GfSGAd-I~~lv~eA~~~A~~~~~~-lt~~dl~~a~~~ 462 (489)
T CHL00195 418 ---IKKLSKLSNKFSGAE-IEQSIIEAMYIAFYEKRE-FTTDDILLALKQ 462 (489)
T ss_pred ---HHHHHhhcCCCCHHH-HHHHHHHHHHHHHHcCCC-cCHHHHHHHHHh
Confidence 778899999999998 899999999988877653 577777666443
No 161
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=3.6e-10 Score=120.77 Aligned_cols=228 Identities=18% Similarity=0.209 Sum_probs=133.7
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-------CceE--------
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFI-------- 442 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-------~~li-------- 442 (665)
|..+.|+++.+..+.-.+.- +...+++|.|+||+|||+++++++..+. .++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred ccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 56789999998877333322 1346899999999999999999998773 2111
Q ss_pred -EEechhhh---------------hhhhc-cch-H-----HHHHH-------HHH--HHhcCCeEEEEcCccccccCCcC
Q psy15936 443 -RVSGSELV---------------QKFIG-EGS-R-----MVREL-------FVM--AREHAPSIIFMDEIDSIGSSRIE 490 (665)
Q Consensus 443 -rv~~~dl~---------------~~~~g-~~~-~-----~~~~i-------f~~--a~~~~p~VlliDEID~l~~~~~~ 490 (665)
-.+|.... ...+. ..+ + .+... |+. .......++|+||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L------ 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL------ 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC------
Confidence 00011000 00110 000 0 00000 000 00122469999999975
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-CCCccccCCCC
Q psy15936 491 SGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-ILDPALLRPGR 569 (665)
Q Consensus 491 ~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-~Ld~aLlr~gR 569 (665)
++..+..+.+++..-.- .+.-.|.... + .....+++++|..+ .++++++. |
T Consensus 144 -----~~~~Q~~Ll~~l~~g~~---------~v~r~G~~~~-----------~-~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 144 -----EDHLVDVLLDVAASGWN---------VVEREGISIR-----------H-PARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred -----CHHHHHHHHHHHHhCCe---------EEEECCEEEE-----------c-CCCEEEEeccccccCCCCHHHHh--h
Confidence 34566667666643110 0000000000 0 00114566666554 58899999 9
Q ss_pred eeEEEEeCCCCH-HHHHHHHHHhhccC-------------------------------CCCCCC--CHHHHHHHCCCCCH
Q psy15936 570 IDRKIEFPPPNE-EARLDILRIHSRKM-------------------------------NLTRGI--NLRKIAELMPGASG 615 (665)
Q Consensus 570 fd~~I~~~~P~~-eer~~Il~~~l~~~-------------------------------~~~~~v--dl~~la~~t~g~s~ 615 (665)
|...+.++.|.. ++|.+|++...... .+++.+ -+..++..+..-+.
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999998876 88889998743210 011000 02233334443366
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
|.-..+++.|...|..+++..|+.+|+..+..-++..
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999998887764
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=7.9e-10 Score=127.20 Aligned_cols=195 Identities=19% Similarity=0.243 Sum_probs=128.7
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE----Ee
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR----VS 445 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir----v~ 445 (665)
-+...+..|+++.|.+..++.++.++.. + .-+.++||+||+|+|||++|+++|+.+.+.... -.
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 3556778899999999999999888764 1 234579999999999999999999998653110 00
Q ss_pred ch--------------hhh--hhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHH
Q psy15936 446 GS--------------ELV--QKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 505 (665)
Q Consensus 446 ~~--------------dl~--~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~ 505 (665)
|. ++. ..........+++++..+.. ....|++|||+|.+.. +. ...
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a---~na 140 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AA---FNA 140 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HH---HHH
Confidence 10 000 00011233456666665542 2346999999997632 22 444
Q ss_pred HHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHH
Q psy15936 506 LLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 585 (665)
Q Consensus 506 Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~ 585 (665)
|+..++..... + .+|++|+.+..+.+.+++ |+ ..+.|+.++.++..
T Consensus 141 LLK~LEePp~~--t-----------------------------vfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~ 186 (620)
T PRK14948 141 LLKTLEEPPPR--V-----------------------------VFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMV 186 (620)
T ss_pred HHHHHhcCCcC--e-----------------------------EEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHH
Confidence 55555543221 1 467777778888889988 77 57899999999888
Q ss_pred HHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHH
Q psy15936 586 DILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEA 625 (665)
Q Consensus 586 ~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A 625 (665)
..+...+...+..- ...+..++..+.| +.+++.++++..
T Consensus 187 ~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLekl 226 (620)
T PRK14948 187 QHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 88887776654431 2236777888776 456766666654
No 163
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=6.7e-11 Score=124.63 Aligned_cols=184 Identities=18% Similarity=0.289 Sum_probs=114.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh--hhccch----------HHHHHHHHHHHhcCCeEEEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK--FIGEGS----------RMVRELFVMAREHAPSIIFM 478 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~--~~g~~~----------~~~~~if~~a~~~~p~Vlli 478 (665)
..+++++|.||||||||++|+.+|..++.+++++++...... +.|... ......+..|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999988765443 233211 00112233333 34578999
Q ss_pred cCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC
Q psy15936 479 DEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID 558 (665)
Q Consensus 479 DEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~ 558 (665)
||+|. +.++++..+..+++. .+. + .+.+ .++....+.+| +||+|+|+.+
T Consensus 141 DEin~-----------a~p~~~~~L~~lLE~-~~~-----l--~i~~-------~~~~i~~hp~F-----rviAT~Np~g 189 (327)
T TIGR01650 141 DEYDA-----------GRPDVMFVIQRVLEA-GGK-----L--TLLD-------QNRVIRAHPAF-----RLFATANTIG 189 (327)
T ss_pred chhhc-----------cCHHHHHHHHHHhcc-CCe-----E--EECC-------CceEecCCCCe-----EEEEeeCCCC
Confidence 99996 355677777777763 110 0 0000 00000011122 7899999864
Q ss_pred ------------CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCC----HHHHHHH----------CCC
Q psy15936 559 ------------ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN----LRKIAEL----------MPG 612 (665)
Q Consensus 559 ------------~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vd----l~~la~~----------t~g 612 (665)
.++.++++ ||-.++.+.+|+.++-.+|+........-..+.. +-.+|.. ..+
T Consensus 190 ~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~ 267 (327)
T TIGR01650 190 LGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTV 267 (327)
T ss_pred cCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 25889999 9987889999999999999987654322100000 1122222 235
Q ss_pred CCHHHHHHHHHHHHHH
Q psy15936 613 ASGAEVKGVCTEAGMY 628 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~ 628 (665)
.|+|.+..+.+.+..+
T Consensus 268 ~SpR~li~w~~~~~~f 283 (327)
T TIGR01650 268 MSPRTVITWAENAEIF 283 (327)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 6888888777765543
No 164
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.18 E-value=4.9e-10 Score=119.53 Aligned_cols=228 Identities=18% Similarity=0.258 Sum_probs=130.3
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-------C--ceEEEe
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------C--TFIRVS 445 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-------~--~lirv~ 445 (665)
+..|+++.|+++.++.+.-.... ....++||.|+||+|||++|++++..+. . .+.++.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45688899999998877432211 1225799999999999999999999883 2 222111
Q ss_pred ch-hh--------hhh------hhcc-chH-HHH-----H-------HHHHH--HhcCCeEEEEcCccccccCCcCCCCC
Q psy15936 446 GS-EL--------VQK------FIGE-GSR-MVR-----E-------LFVMA--REHAPSIIFMDEIDSIGSSRIESGSG 494 (665)
Q Consensus 446 ~~-dl--------~~~------~~g~-~~~-~~~-----~-------if~~a--~~~~p~VlliDEID~l~~~~~~~~~~ 494 (665)
+. +. ... .+.. ++. .+. . .|+.. ......++|+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 10 00 000 0000 000 000 0 01100 0012358999999975
Q ss_pred CChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhh-ccccEEEEEeCCCC-CCCccccCCCCeeE
Q psy15936 495 GDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFE-MAVAKVIMATNRID-ILDPALLRPGRIDR 572 (665)
Q Consensus 495 ~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~-~a~~~VIatTn~~~-~Ld~aLlr~gRfd~ 572 (665)
++..+..+.+.+..-.- .++-.|.. +. .+...+++++|..+ .++++++. ||..
T Consensus 141 -~~~~q~~Lle~mee~~v---------~v~r~G~~-------------~~~p~rfiviAt~NP~e~~l~~aLld--RF~~ 195 (334)
T PRK13407 141 -EDHIVDLLLDVAQSGEN---------VVEREGLS-------------IRHPARFVLVGSGNPEEGELRPQLLD--RFGL 195 (334)
T ss_pred -CHHHHHHHHHHHHcCCe---------EEEECCeE-------------EecCCCEEEEecCCcccCCCCHHHHh--hcce
Confidence 34566666666643210 00000000 00 01114667767654 58889998 9999
Q ss_pred EEEeCCCCH-HHHHHHHHHhhccCC----C------CCCCC--------------------HH---HHHHHCCCCC-HHH
Q psy15936 573 KIEFPPPNE-EARLDILRIHSRKMN----L------TRGIN--------------------LR---KIAELMPGAS-GAE 617 (665)
Q Consensus 573 ~I~~~~P~~-eer~~Il~~~l~~~~----~------~~~vd--------------------l~---~la~~t~g~s-~~d 617 (665)
.+.+++|.. ++|.+|+......-. . ..... .. .++..+.--+ .++
T Consensus 196 ~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~ 275 (334)
T PRK13407 196 SVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGE 275 (334)
T ss_pred EEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHH
Confidence 999998877 899999987532110 0 00000 12 2222222113 344
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 618 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 618 l~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
+. +++.|...|+.+++..|+.+|+..+..-++.
T Consensus 276 i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 276 LT-LLRAARALAAFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred HH-HHHHHHHHHHHcCCCeeCHHHHHHHHHHhhh
Confidence 54 9999999999999999999999887766554
No 165
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.18 E-value=5.4e-10 Score=120.74 Aligned_cols=89 Identities=26% Similarity=0.510 Sum_probs=59.3
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhC-CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhc-c
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-E 456 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g-~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g-~ 456 (665)
.+.|++++++.+..++........+..... -..+.++||+||||||||++|+++|..++.+|+++++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 478999999998776643111111101000 012578999999999999999999999999999999887764 4555 2
Q ss_pred chHHHHHHHHHH
Q psy15936 457 GSRMVRELFVMA 468 (665)
Q Consensus 457 ~~~~~~~if~~a 468 (665)
.+..++.+|..|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 233444444333
No 166
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.18 E-value=3.2e-10 Score=125.91 Aligned_cols=228 Identities=21% Similarity=0.273 Sum_probs=158.0
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE---EE--ec
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI---RV--SG 446 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li---rv--~~ 446 (665)
...+..|+++.|++...+.|+.++.. -.-..+.||.||.|||||++||-+|..+++.-- .+ .|
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 45678899999999999999998865 133456899999999999999999998875420 00 01
Q ss_pred ---hhh-------hhhh---hccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 447 ---SEL-------VQKF---IGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 447 ---~dl-------~~~~---~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
..+ ..++ ...+-..+|++.+.+. ...++|.+|||++.|.. ..++.||..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~--------------~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK--------------QAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH--------------HHHHHHhcc
Confidence 011 1111 1123344566665543 23467999999997643 336777776
Q ss_pred hcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHH
Q psy15936 510 LDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILR 589 (665)
Q Consensus 510 ~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~ 589 (665)
++.-. .++++|.+|..+..+++.+++ |+ .++.|...+.++....+.
T Consensus 143 LEEPP-------------------------------~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~ 188 (515)
T COG2812 143 LEEPP-------------------------------SHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLA 188 (515)
T ss_pred cccCc-------------------------------cCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHH
Confidence 65421 122688888889999999998 77 478899999999999999
Q ss_pred HhhccCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHhhhcchhhhch
Q psy15936 590 IHSRKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMYAL--------RERRVHVTQEDFEMAVAKVMQKDSEKNMSI 660 (665)
Q Consensus 590 ~~l~~~~~~~~vd-l~~la~~t~g~s~~dl~~l~~~A~~~A~--------~~~~~~It~~d~~~Al~~~~~~~~~~~~~~ 660 (665)
.++.+.++.-+.+ +..+|+..+| +.||...++..|....- +.--..++.+.+...+..+...+....+..
T Consensus 189 ~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~ 267 (515)
T COG2812 189 AILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRL 267 (515)
T ss_pred HHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHH
Confidence 9998888764433 6778888887 88999999999886642 111234555556666666666555544443
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.17 E-value=8.6e-10 Score=131.74 Aligned_cols=209 Identities=23% Similarity=0.350 Sum_probs=131.1
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC---C-ceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechh
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---P-KGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSE 448 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~---~-~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~d 448 (665)
...+.+.|++..++.+...+.. ...|+.. | ..++|+||+|||||++|+++++.+ +.+++++++++
T Consensus 565 ~l~~~viGQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se 636 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNAIRR--------SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE 636 (857)
T ss_pred HhCCeEeCCHHHHHHHHHHHHH--------HHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH
Confidence 3455688999999999888864 1223322 2 368999999999999999999977 46799999987
Q ss_pred hhhh-----hh-------ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCccc
Q psy15936 449 LVQK-----FI-------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 449 l~~~-----~~-------g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~ 516 (665)
+... .. |.... ..+....+....+++++||+++ +++.+++.+.++++...-.++.
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEiek-----------a~~~v~~~Ll~ile~g~l~d~~ 703 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEK-----------AHPDVFNILLQVLDDGRLTDGQ 703 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhh-----------CCHHHHHHHHHHHhhCceecCC
Confidence 6432 11 11111 1222333345568999999996 4567788888877542111100
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------------------------CCCCccccCCCCee
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------------------------DILDPALLRPGRID 571 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------------------------~~Ld~aLlr~gRfd 571 (665)
. . ..+|.+. .||+|||.. ..+.|+|+. |+|
T Consensus 704 g-r--------------------~vd~rn~--iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld 758 (857)
T PRK10865 704 G-R--------------------TVDFRNT--VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RID 758 (857)
T ss_pred c-e--------------------EEeeccc--EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCC
Confidence 0 0 0011111 366777652 235678887 999
Q ss_pred EEEEeCCCCHHHHHHHHHHhhccC-------CCCCCCC---HHHHHHHCC--CCCHHHHHHHHHHHHHHHH
Q psy15936 572 RKIEFPPPNEEARLDILRIHSRKM-------NLTRGIN---LRKIAELMP--GASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 572 ~~I~~~~P~~eer~~Il~~~l~~~-------~~~~~vd---l~~la~~t~--g~s~~dl~~l~~~A~~~A~ 630 (665)
..+.|.+++.++..+|++.++..+ ++.-.++ ++.|+.... .|-.|.|+.+++.-....+
T Consensus 759 ~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~l 829 (857)
T PRK10865 759 EVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPL 829 (857)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHH
Confidence 999999999999999998877542 2222233 344444321 1335677777776655433
No 168
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=8.8e-10 Score=126.81 Aligned_cols=210 Identities=18% Similarity=0.240 Sum_probs=135.6
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE-----
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV----- 444 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv----- 444 (665)
.+...+.+|+++.|++..++.++..+.. | ..+..+||+||+|+|||++|+.+|+.+.+.....
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4667888999999999999999887753 1 2345679999999999999999999886422100
Q ss_pred e-ch---hhhhh-------h---hccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 445 S-GS---ELVQK-------F---IGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 445 ~-~~---dl~~~-------~---~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
+ |. .+... + .......++.+...+.. ....|++|||+|.+.. +. +..|
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a---~naL 140 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AA---FNAL 140 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HH---HHHH
Confidence 0 00 00000 0 01112233444433322 2356999999997632 22 4445
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHH
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLD 586 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~ 586 (665)
+..++...... .+|++++..+.+.+.+++ |+ ..+.|+.++..+...
T Consensus 141 Lk~LEepp~~t-------------------------------v~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~ 186 (585)
T PRK14950 141 LKTLEEPPPHA-------------------------------IFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAA 186 (585)
T ss_pred HHHHhcCCCCe-------------------------------EEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHH
Confidence 55554432211 466777777778888887 66 478999999999999
Q ss_pred HHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 587 ILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 587 Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
++...+...++.- +..+..++..+.| +.+++.+.++....+ ....|+.+++..
T Consensus 187 ~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ 240 (585)
T PRK14950 187 HLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLATT----YGGEISLSQVQS 240 (585)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHH
Confidence 9998887665432 2236778888776 788888877765432 234577777654
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.16 E-value=5.1e-10 Score=113.11 Aligned_cols=171 Identities=23% Similarity=0.371 Sum_probs=109.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
...++||||+|+|||+|+.++++.+ +..++++++.++...+..........-|.... ...++++|||++.+..+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc
Confidence 3468999999999999999998864 56788888888766543322211112222222 34579999999987432
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-CCCCC---CCcc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT-NRIDI---LDPA 563 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT-n~~~~---Ld~a 563 (665)
...+..+..+++.+..... .+|.|+ ..|.. +++.
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k---------------------------------~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGK---------------------------------QLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTS---------------------------------EEEEEESS-TTTTTTS-HH
T ss_pred ---------hHHHHHHHHHHHHHHhhCC---------------------------------eEEEEeCCCCccccccChh
Confidence 2455666666665432111 355555 55554 4677
Q ss_pred ccCCCCeeE--EEEeCCCCHHHHHHHHHHhhccCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q psy15936 564 LLRPGRIDR--KIEFPPPNEEARLDILRIHSRKMNLTRGIN-LRKIAELMPGASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 564 Llr~gRfd~--~I~~~~P~~eer~~Il~~~l~~~~~~~~vd-l~~la~~t~g~s~~dl~~l~~~A~~~A 629 (665)
|.+ ||.. .+.+.+|+.+.|.+|++..+...++.-+.+ .+.|+....+ +.+.|..++..-..++
T Consensus 151 L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 151 LRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp HHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred hhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 777 7766 899999999999999999988777653322 6677777764 7889988888766554
No 170
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.8e-09 Score=124.18 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=132.3
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-------
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT------- 440 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~------- 440 (665)
-..+...+..|+++.|++..++.+..++.. -.-+..+|||||+|+|||++|+.+|..+.+.
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~ 73 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGE 73 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 345567788999999999999999888753 1344568999999999999999999987532
Q ss_pred ------------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChH
Q psy15936 441 ------------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSE 498 (665)
Q Consensus 441 ------------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~ 498 (665)
++.+++.+ ......++.+...+.. ....|++|||++.+.. .
T Consensus 74 ~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~ 136 (614)
T PRK14971 74 ACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------A 136 (614)
T ss_pred CCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------H
Confidence 22222211 0112344555544432 2346999999997632 2
Q ss_pred HHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCC
Q psy15936 499 VQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPP 578 (665)
Q Consensus 499 ~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~ 578 (665)
. ...|+..++...... .+|++|+.+..+-+.+++ |+ ..++|.+
T Consensus 137 a---~naLLK~LEepp~~t-------------------------------ifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ 179 (614)
T PRK14971 137 A---FNAFLKTLEEPPSYA-------------------------------IFILATTEKHKILPTILS--RC-QIFDFNR 179 (614)
T ss_pred H---HHHHHHHHhCCCCCe-------------------------------EEEEEeCCchhchHHHHh--hh-heeecCC
Confidence 3 334444444432211 467777777889999998 76 4699999
Q ss_pred CCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q psy15936 579 PNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMY 628 (665)
Q Consensus 579 P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~ 628 (665)
++.++....++..+...++.-+ ..+..|+..+.| +.+++.+.+.....+
T Consensus 180 ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 180 IQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQVVSF 229 (614)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 9999999999988887776533 236778888765 677777777665544
No 171
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.15 E-value=2.5e-09 Score=117.69 Aligned_cols=223 Identities=16% Similarity=0.179 Sum_probs=133.1
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEech-hhhhhhhcc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGS-ELVQKFIGE 456 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~-dl~~~~~g~ 456 (665)
.+.|.+++++.+...+ -.+.++||+||||||||++|++++..++. +|....+. .......|.
T Consensus 21 ~i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 4678888888774433 35678999999999999999999997753 33322211 011122222
Q ss_pred c-hHHH--HHHHHHHHhc---CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 457 G-SRMV--RELFVMAREH---APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 457 ~-~~~~--~~if~~a~~~---~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
. -... ..-|...... ...++|+|||+. +.+..+..+.+.+..-.-
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r-----------asp~~QsaLLeam~Er~~------------------ 136 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK-----------AGPAILNTLLTAINERRF------------------ 136 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeeccccc-----------CCHHHHHHHHHHHHhCeE------------------
Confidence 1 0000 1112111111 234899999985 345666667666643221
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCC---CCccccCCCCeeEEEEeCCCC-HHHHHHHHHHhhcc--CCC--CCCCC
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDI---LDPALLRPGRIDRKIEFPPPN-EEARLDILRIHSRK--MNL--TRGIN 602 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~---Ld~aLlr~gRfd~~I~~~~P~-~eer~~Il~~~l~~--~~~--~~~vd 602 (665)
....+......+.+++|||.... ..+++.. ||-..+.+|+|+ .++..+++...... ... ..-+.
T Consensus 137 ------t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis 208 (498)
T PRK13531 137 ------RNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQIT 208 (498)
T ss_pred ------ecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCC
Confidence 11111223333467777774321 2248888 998899999997 45657787653221 111 00111
Q ss_pred --------------------HH---HHHHH---C---CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 603 --------------------LR---KIAEL---M---PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 603 --------------------l~---~la~~---t---~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
.+ .|+.. + ...|+|--..+++.|...|+..++..|+++|+. .+..++...
T Consensus 209 ~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 209 DEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 12 22221 1 227889999999999999999999999999999 777777655
Q ss_pred ch
Q psy15936 654 SE 655 (665)
Q Consensus 654 ~~ 655 (665)
.+
T Consensus 288 l~ 289 (498)
T PRK13531 288 AQ 289 (498)
T ss_pred HH
Confidence 44
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.15 E-value=8.2e-10 Score=131.89 Aligned_cols=228 Identities=18% Similarity=0.291 Sum_probs=130.5
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC---C-ceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---P-KGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV 450 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~---~-~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~ 450 (665)
-+.+.|+++.++.+...+.. ...|+.. | ..+||+||+|||||++|+++|+.+ +.++++++++++.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRR--------ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred cCcCcChHHHHHHHHHHHHH--------HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcc
Confidence 34688999999999888854 2233322 2 358999999999999999999987 4678999887763
Q ss_pred hh------------hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc---CC--
Q psy15936 451 QK------------FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD---GF-- 513 (665)
Q Consensus 451 ~~------------~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d---~~-- 513 (665)
.. |.|... ...+....+.+..+|+++||+|+ +++++++.+.++++... +.
T Consensus 580 ~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeiek-----------a~~~v~~~Llq~le~g~~~d~~g~ 646 (821)
T CHL00095 580 EKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEK-----------AHPDIFNLLLQILDDGRLTDSKGR 646 (821)
T ss_pred ccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhh-----------CCHHHHHHHHHHhccCceecCCCc
Confidence 21 122211 12344555556679999999997 46678888888776421 10
Q ss_pred --cccCccccccccchhhhhhhhh--cccchh-------hhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 514 --EATKNIKGVCTEAGMYALRERR--VHVTQE-------DFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 514 --~~~~~i~~vc~eAg~~air~~r--~~v~~~-------df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
+....+..++++.|...+.... ...... .+......+. ..-...+.|+|+. |+|.+|.|.+++.+
T Consensus 647 ~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~--~~~~~~f~pefln--Rid~ii~F~pL~~~ 722 (821)
T CHL00095 647 TIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVN--EELKQFFRPEFLN--RLDEIIVFRQLTKN 722 (821)
T ss_pred EEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHH--HHHHHhcCHHHhc--cCCeEEEeCCCCHH
Confidence 1111122222222221111000 000000 0000000000 0000124577887 99999999999999
Q ss_pred HHHHHHHHhhccC-------CCCCCCC---HHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q psy15936 583 ARLDILRIHSRKM-------NLTRGIN---LRKIAELM--PGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 583 er~~Il~~~l~~~-------~~~~~vd---l~~la~~t--~g~s~~dl~~l~~~A~~~A~ 630 (665)
+..+|+...+..+ ++.-.++ .+.|+... ..+-.+.|+.+++.-....+
T Consensus 723 ~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l 782 (821)
T CHL00095 723 DVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPL 782 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHH
Confidence 9999998776542 2221111 45566642 23446777777766554433
No 173
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.14 E-value=1.1e-09 Score=117.20 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=136.4
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-------ceE-EEec
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFI-RVSG 446 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~-------~li-rv~~ 446 (665)
...|+++.|+++.+..+.-.+.. +...++||.|++|||||++|+++++.+.. +|. .+..
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 34678899999998888555443 23358999999999999999999887631 121 0000
Q ss_pred hh-----hhhh------------------hh-ccchHH------HHHHHHHHH---------hcCCeEEEEcCccccccC
Q psy15936 447 SE-----LVQK------------------FI-GEGSRM------VRELFVMAR---------EHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 447 ~d-----l~~~------------------~~-g~~~~~------~~~if~~a~---------~~~p~VlliDEID~l~~~ 487 (665)
++ .... .+ +..+.. +...|.... .....++|+||++.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL--- 156 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL--- 156 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC---
Confidence 00 0000 00 001110 011111110 112469999999975
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhcccc-EEEEEeCCCC-CCCcccc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA-KVIMATNRID-ILDPALL 565 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~-~VIatTn~~~-~Ld~aLl 565 (665)
++..+..+.+.+..-... + .-.|.. ...... .+|+|.|..+ .++++++
T Consensus 157 --------~~~~Q~~LLeam~e~~~~-----i----er~G~s-------------~~~p~rfiviaT~np~eg~l~~~Ll 206 (350)
T CHL00081 157 --------DDHLVDILLDSAASGWNT-----V----EREGIS-------------IRHPARFVLVGSGNPEEGELRPQLL 206 (350)
T ss_pred --------CHHHHHHHHHHHHhCCeE-----E----eeCCee-------------eecCCCEEEEeccCcccCCCCHHHH
Confidence 345666666665431100 0 000000 000111 3555556554 5899999
Q ss_pred CCCCeeEEEEeCCCC-HHHHHHHHHHhhccC--CCC-----------------------CCCC-----H---HHHHHHCC
Q psy15936 566 RPGRIDRKIEFPPPN-EEARLDILRIHSRKM--NLT-----------------------RGIN-----L---RKIAELMP 611 (665)
Q Consensus 566 r~gRfd~~I~~~~P~-~eer~~Il~~~l~~~--~~~-----------------------~~vd-----l---~~la~~t~ 611 (665)
. ||...+.+..|+ .+.+.+|++...... ... ..+. . ..++..+.
T Consensus 207 d--Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~ 284 (350)
T CHL00081 207 D--RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD 284 (350)
T ss_pred H--HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC
Confidence 9 999999999998 599999998753211 000 0000 1 22333333
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
--++|--..+++.|..+|..+++..|+.+|+..+..-++...
T Consensus 285 ~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 285 VDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 346777778999999999999999999999999998877643
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.13 E-value=6.8e-10 Score=111.80 Aligned_cols=194 Identities=25% Similarity=0.327 Sum_probs=122.1
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
|.......++++.|.+++++.+.+.... |- ...+..++||+|++|||||++++++.... +..++.+..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQ-------FL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHH-------HH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 4455567888999999999998766543 22 23477899999999999999999999866 566777776
Q ss_pred hhhhhhhhccchHHHHHHHHHHH-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccccc
Q psy15936 447 SELVQKFIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTE 525 (665)
Q Consensus 447 ~dl~~~~~g~~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~e 525 (665)
.++.. +..++...+ ...+.|+|+||+. + ...+ .. ...|-..++|--. ....+
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F--------e~~d-~~---yk~LKs~LeGgle-----~~P~N 141 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLS-F--------EEGD-TE---YKALKSVLEGGLE-----ARPDN 141 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCC-C--------CCCc-HH---HHHHHHHhcCccc-----cCCCc
Confidence 66532 234444444 2346799999954 1 1111 11 2333344444311 11111
Q ss_pred chhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCc-----------------------cccCCCCeeEEEEeCCCCHH
Q psy15936 526 AGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP-----------------------ALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 526 Ag~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~-----------------------aLlr~gRfd~~I~~~~P~~e 582 (665)
. .+.+|+|+...++. +|-. ||+..|.|.+|+.+
T Consensus 142 v----------------------liyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~ 197 (249)
T PF05673_consen 142 V----------------------LIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQE 197 (249)
T ss_pred E----------------------EEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHH
Confidence 1 35566665433321 2333 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCC-CHH----HHHHHCCCCCHHHHHHHHH
Q psy15936 583 ARLDILRIHSRKMNLTRGI-NLR----KIAELMPGASGAEVKGVCT 623 (665)
Q Consensus 583 er~~Il~~~l~~~~~~~~v-dl~----~la~~t~g~s~~dl~~l~~ 623 (665)
+-.+|++.++...++.-+. .+. ..|..-.|.||+-..+.+.
T Consensus 198 ~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 198 EYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999877765331 121 1222334566666655554
No 175
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.09 E-value=1.4e-11 Score=122.62 Aligned_cols=227 Identities=15% Similarity=0.127 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEec---cCCeeeeecCCcccccCCCC
Q psy15936 268 KEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKVH---PEGKFVVDIDKNIDINDVTP 340 (665)
Q Consensus 268 ~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka~---~~~~f~~~~~~~l~~~~~~~ 340 (665)
.++++-|.+.+++.-+ .+...+.+|+.|..- .|+.+ |||||||++++|. +...|+.+..+.+.-.++|+
T Consensus 119 t~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 119 TLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred cHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 3445555666655432 244455667777653 34443 9999999999984 44579999999999999999
Q ss_pred CceEEecccchhhhhhcCCCCCcchhhhhhccCC-CCCccccCCC-hHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEE
Q psy15936 341 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVP-DSTYEMVGGL-DNQIKEIKEVIELPVKHPELFDALGIAQPKGVLL 418 (665)
Q Consensus 341 ~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~-~~~~~~i~G~-~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL 418 (665)
|++.+ +.+++.+++.+||++|+|++|+++ +.+|+.+-|- .+.+..+. -+..|+..+.||..
T Consensus 195 gar~I-----hely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALL------------TelDgi~eneGVvt 257 (368)
T COG1223 195 GARRI-----HELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALL------------TELDGIKENEGVVT 257 (368)
T ss_pred HHHHH-----HHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHH------------HhccCcccCCceEE
Confidence 99998 999999999999999999999986 5677777552 33333331 23347778888888
Q ss_pred eCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChH
Q psy15936 419 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE 498 (665)
Q Consensus 419 ~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~ 498 (665)
.+ |++..+.||+++.. +++--+++..++...+..+++.-...-|- -+ +++
T Consensus 258 Ia---------aTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Pl-pv--~~~---------------- 307 (368)
T COG1223 258 IA---------ATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPL-PV--DAD---------------- 307 (368)
T ss_pred Ee---------ecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCC-cc--ccC----------------
Confidence 87 88888888887632 33333455666666667777764444331 00 112
Q ss_pred HHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccE
Q psy15936 499 VQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549 (665)
Q Consensus 499 ~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~ 549 (665)
+..+.....|+++.+...-+...|-.-|+++.+..|..+|++.+..+
T Consensus 308 ----~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 308 ----LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred ----HHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 56777888889888855555556667899999999999999988754
No 176
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.09 E-value=1.1e-09 Score=101.11 Aligned_cols=125 Identities=41% Similarity=0.646 Sum_probs=78.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHH---HHHHHHHHHhcCCeEEEEcCccccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRM---VRELFVMAREHAPSIIFMDEIDSIG 485 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~---~~~if~~a~~~~p~VlliDEID~l~ 485 (665)
.+.+++++||||||||++++.+++.+ +..++.+++.............. ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 56789999999999999999999998 88888888876544332221111 1122233334567899999999641
Q ss_pred cCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC--CCCcc
Q psy15936 486 SSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID--ILDPA 563 (665)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~--~Ld~a 563 (665)
. .....+..++....... .......+|++++... .+++.
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~----------------------------~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLR----------------------------IDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred H-----------HHHHHHHHHHHhcCcee----------------------------ccCCCeEEEEecCccccCCcChh
Confidence 1 22233334343332110 0000115888888776 67778
Q ss_pred ccCCCCeeEEEEeC
Q psy15936 564 LLRPGRIDRKIEFP 577 (665)
Q Consensus 564 Llr~gRfd~~I~~~ 577 (665)
+.+ ||+..+.++
T Consensus 139 ~~~--r~~~~i~~~ 150 (151)
T cd00009 139 LYD--RLDIRIVIP 150 (151)
T ss_pred HHh--hhccEeecC
Confidence 877 998777776
No 177
>PRK09087 hypothetical protein; Validated
Probab=99.06 E-value=2.4e-09 Score=108.72 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=112.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG 492 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~ 492 (665)
...++|+||+|+|||+|+++++...+..++. ..++...+ +.... ..++++||++.+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~~~-----------~~~~~---~~~l~iDDi~~~~~------ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGSDA-----------ANAAA---EGPVLIEDIDAGGF------ 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcchHH-----------HHhhh---cCeEEEECCCCCCC------
Confidence 3459999999999999999999876555333 22222111 11111 14799999996421
Q ss_pred CCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCC---CCccccCCCC
Q psy15936 493 SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI---LDPALLRPGR 569 (665)
Q Consensus 493 ~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~---Ld~aLlr~gR 569 (665)
+ +..+..+++...... . ..+++++..|.. ..+.+++ |
T Consensus 102 ---~---~~~lf~l~n~~~~~g-~-------------------------------~ilits~~~p~~~~~~~~dL~S--R 141 (226)
T PRK09087 102 ---D---ETGLFHLINSVRQAG-T-------------------------------SLLMTSRLWPSSWNVKLPDLKS--R 141 (226)
T ss_pred ---C---HHHHHHHHHHHHhCC-C-------------------------------eEEEECCCChHHhccccccHHH--H
Confidence 1 223444444332211 0 024444444432 3678888 7
Q ss_pred ee--EEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 570 ID--RKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 570 fd--~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+. ..+++.+|+.++|.+|++.++...++. ++.-++.|+....+ +.+.+..++......+...+ ..+|...+.+++
T Consensus 142 l~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l 219 (226)
T PRK09087 142 LKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVL 219 (226)
T ss_pred HhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 75 599999999999999999999876554 22237888888875 66777776666665565544 469999999988
Q ss_pred HHH
Q psy15936 647 AKV 649 (665)
Q Consensus 647 ~~~ 649 (665)
+.+
T Consensus 220 ~~~ 222 (226)
T PRK09087 220 NEM 222 (226)
T ss_pred Hhh
Confidence 765
No 178
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.05 E-value=6.9e-09 Score=107.98 Aligned_cols=100 Identities=25% Similarity=0.251 Sum_probs=83.7
Q ss_pred EEEEEeCC------------CCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCH
Q psy15936 549 KVIMATNR------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKIAELMPGASG 615 (665)
Q Consensus 549 ~VIatTn~------------~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~ 615 (665)
.+|+|||+ |..+|..|++ |+ ..|.-.+++.++.++|+++.++...+.- +.-++.|+.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 57888885 6778889988 77 5788889999999999999988766542 2337888888777788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
+..-+|+.-|...|.++++..|..+|+..|.+-...
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLD 434 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhh
Confidence 999999999999999999999999999999876654
No 179
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=3.2e-09 Score=123.26 Aligned_cols=225 Identities=21% Similarity=0.235 Sum_probs=133.3
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-------------------
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE------------------- 438 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~------------------- 438 (665)
|..+.|++..+..+.-.... +...+|||.|++|||||++|++++..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 56788999888766333322 1235799999999999999999998872
Q ss_pred ----------------CceEEEechhhhhhhhccchHHHHHHHHH---------HHhcCCeEEEEcCccccccCCcCCCC
Q psy15936 439 ----------------CTFIRVSGSELVQKFIGEGSRMVRELFVM---------AREHAPSIIFMDEIDSIGSSRIESGS 493 (665)
Q Consensus 439 ----------------~~lirv~~~dl~~~~~g~~~~~~~~if~~---------a~~~~p~VlliDEID~l~~~~~~~~~ 493 (665)
.+|+.+.+......+.|... +...+.. .......++|+|||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~-------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLD-------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------
Confidence 34444433322111222110 0000100 001123599999999753
Q ss_pred CCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-CCCCccccCCCCeeE
Q psy15936 494 GGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-DILDPALLRPGRIDR 572 (665)
Q Consensus 494 ~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-~~Ld~aLlr~gRfd~ 572 (665)
...+..|.++++.-.- .++.+..... + .+-..+|+|+|.. ..+.++|+. ||+.
T Consensus 140 ---~~~q~~Ll~~le~g~~--------~v~r~g~~~~------------~-~~~~~lIat~np~eg~l~~~L~d--R~~l 193 (633)
T TIGR02442 140 ---DHLVDVLLDAAAMGVN--------RVEREGLSVS------------H-PARFVLIGTMNPEEGDLRPQLLD--RFGL 193 (633)
T ss_pred ---HHHHHHHHHHHhcCCE--------EEEECCceee------------e-cCCeEEEEecCCCCCCCCHHHHh--hcce
Confidence 3556666666653210 0000000000 0 0111578888864 358889999 9999
Q ss_pred EEEeCCCC-HHHHHHHHHHhhcc-------------------------------CCCCCCCCHHHHHHHC--CCC-CHHH
Q psy15936 573 KIEFPPPN-EEARLDILRIHSRK-------------------------------MNLTRGINLRKIAELM--PGA-SGAE 617 (665)
Q Consensus 573 ~I~~~~P~-~eer~~Il~~~l~~-------------------------------~~~~~~vdl~~la~~t--~g~-s~~d 617 (665)
.|.++.|. .+++.++++..... +.++++ -+..++..+ .|. +.+.
T Consensus 194 ~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra 272 (633)
T TIGR02442 194 CVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRA 272 (633)
T ss_pred EEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccH
Confidence 99998775 57777777653220 011100 123333322 233 4566
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 618 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 618 l~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
...+++.|...|..+++..|+.+|+..|+.-++..
T Consensus 273 ~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 273 DIVMARAARALAALDGRRRVTAEDVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhh
Confidence 67888999899999999999999999999988854
No 180
>PHA02244 ATPase-like protein
Probab=99.01 E-value=9e-09 Score=109.83 Aligned_cols=139 Identities=24% Similarity=0.274 Sum_probs=83.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhh---ccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI---GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~---g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
..+.++||+||||||||++|+++|..++.+|++++...-..... .........-|..+. ..+.++++||++.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a--- 192 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS--- 192 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC---
Confidence 34567999999999999999999999999999987531111111 111111111122222 34579999999963
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC----------
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---------- 557 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---------- 557 (665)
+++++..+..++..- -+...+ . ....+.+| ++|+|+|.+
T Consensus 193 --------~p~vq~~L~~lLd~r-~l~l~g----------------~-~i~~h~~F-----RlIATsN~~~~G~~~~y~G 241 (383)
T PHA02244 193 --------IPEALIIINSAIANK-FFDFAD----------------E-RVTAHEDF-----RVISAGNTLGKGADHIYVA 241 (383)
T ss_pred --------CHHHHHHHHHHhccC-eEEecC----------------c-EEecCCCE-----EEEEeeCCCccCcccccCC
Confidence 345555566655421 000000 0 00011122 789999873
Q ss_pred -CCCCccccCCCCeeEEEEeCCCCHHHHHHHH
Q psy15936 558 -DILDPALLRPGRIDRKIEFPPPNEEARLDIL 588 (665)
Q Consensus 558 -~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il 588 (665)
..+++++++ || ..|+|..|+. ....|+
T Consensus 242 ~k~L~~AllD--RF-v~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 242 RNKIDGATLD--RF-APIEFDYDEK-IEHLIS 269 (383)
T ss_pred CcccCHHHHh--hc-EEeeCCCCcH-HHHHHh
Confidence 457899999 99 4799999984 333444
No 181
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.00 E-value=1.7e-08 Score=114.52 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=133.9
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe----chhhhhhhh-
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS----GSELVQKFI- 454 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~----~~dl~~~~~- 454 (665)
.+.|.+.++..+.-++.-- .....-+...+....++||+|+||+|||++|+++++.+....+..+ +..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg-~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGG-VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCC-CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 5678887766662222110 0000001111222347999999999999999999998764433321 111111000
Q ss_pred cc--chH-HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 455 GE--GSR-MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 455 g~--~~~-~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.+ +.. .....+.. ....++++||+|.+. +..+..+.+.+++-. .+ +..+|....
T Consensus 283 ~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~-i~--------i~k~G~~~~ 339 (509)
T smart00350 283 DPETREFTLEGGALVL---ADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQT-IS--------IAKAGITTT 339 (509)
T ss_pred ccCcceEEecCccEEe---cCCCEEEEechhhCC-----------HHHHHHHHHHHhcCE-EE--------EEeCCEEEE
Confidence 00 000 00000111 234699999999753 355666666654311 00 000111000
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeEEEEe-CCCCHHHHHHHHHHhhccCC-
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDRKIEF-PPPNEEARLDILRIHSRKMN- 596 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~~I~~-~~P~~eer~~Il~~~l~~~~- 596 (665)
.++-..||||+|+.+ .+++++++ |||..+.+ ..|+.+...+|+++.+....
T Consensus 340 ------------l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~ 405 (509)
T smart00350 340 ------------LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRY 405 (509)
T ss_pred ------------ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcc
Confidence 111226999999763 48999999 99985555 68999999998887543211
Q ss_pred --------CCCCCC-----------------------HHHHHH-----H----------CCCCCHHHHHHHHHHHHHHHH
Q psy15936 597 --------LTRGIN-----------------------LRKIAE-----L----------MPGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 597 --------~~~~vd-----------------------l~~la~-----~----------t~g~s~~dl~~l~~~A~~~A~ 630 (665)
....++ .+.+.. + ..+.|+|.+..+++.|...|.
T Consensus 406 ~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~ 485 (509)
T smart00350 406 SHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAK 485 (509)
T ss_pred cCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHH
Confidence 000011 111111 1 124688999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHhh
Q psy15936 631 RERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 631 ~~~~~~It~~d~~~Al~~~~~ 651 (665)
.+.+..|+.+|+..|++-+..
T Consensus 486 l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 486 MRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred HcCCCccCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 182
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.00 E-value=1.3e-08 Score=109.34 Aligned_cols=219 Identities=25% Similarity=0.240 Sum_probs=126.7
Q ss_pred cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh--hhccch
Q psy15936 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK--FIGEGS 458 (665)
Q Consensus 381 i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~--~~g~~~ 458 (665)
+.|.++++..+...+ -.+.++||.||||||||++|+.+|..++.+|+++.|.+.... ..|...
T Consensus 26 ~~g~~~~~~~~l~a~---------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLAL---------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHH---------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 456666666553333 346789999999999999999999999999999998754322 111111
Q ss_pred HHHH----HHHHHHHh-cCC---eEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 459 RMVR----ELFVMARE-HAP---SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 459 ~~~~----~if~~a~~-~~p---~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
-... ..|..... -.. +++++|||+. +.+.++..+.+.+.......+.
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr-----------a~p~~q~aLl~~l~e~~vtv~~-------------- 145 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINR-----------APPEVQNALLEALEERQVTVPG-------------- 145 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEecccc-----------CCHHHHHHHHHHHhCcEEEECC--------------
Confidence 1000 00000000 001 3999999996 5567888888877653322111
Q ss_pred hhhhhcccchhh-hhcc-ccEEEEEeC-----CCCCCCccccCCCCeeEEEEeCCC-CHHHHHHHHHHhhccC------C
Q psy15936 531 LRERRVHVTQED-FEMA-VAKVIMATN-----RIDILDPALLRPGRIDRKIEFPPP-NEEARLDILRIHSRKM------N 596 (665)
Q Consensus 531 ir~~r~~v~~~d-f~~a-~~~VIatTn-----~~~~Ld~aLlr~gRfd~~I~~~~P-~~eer~~Il~~~l~~~------~ 596 (665)
.. +... ...|++|+| ....+++++++ ||-..+.+++| ...+...++....... .
T Consensus 146 ----------~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~ 213 (329)
T COG0714 146 ----------LTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESL 213 (329)
T ss_pred ----------cCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchh
Confidence 11 1111 114666768 34457899999 99889999999 4444444444333211 0
Q ss_pred CCCCCCH-----------------------HHHHHH-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 597 LTRGINL-----------------------RKIAEL-------MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 597 ~~~~vdl-----------------------~~la~~-------t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
...-+.. ..+... ..|.+++....+...+...|...++..+..+|+....
T Consensus 214 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~ 293 (329)
T COG0714 214 VKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALA 293 (329)
T ss_pred hhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHh
Confidence 0000110 111111 1233566666677767677777777788888876655
Q ss_pred HHHhh
Q psy15936 647 AKVMQ 651 (665)
Q Consensus 647 ~~~~~ 651 (665)
.....
T Consensus 294 ~~~~~ 298 (329)
T COG0714 294 EPALA 298 (329)
T ss_pred hhhhh
Confidence 54444
No 183
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=2.6e-08 Score=103.42 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=69.3
Q ss_pred ccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-----CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15936 564 LLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-----RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 638 (665)
Q Consensus 564 Llr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-----~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It 638 (665)
+.+ |+...+++++++.++..+++...+...+.. .+..++.|+..+.|. ++.+..+|..|...|..++...|+
T Consensus 179 l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~ 255 (269)
T TIGR03015 179 LRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIG 255 (269)
T ss_pred HHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCC
Confidence 445 787899999999999999999888654421 223477788899885 677999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy15936 639 QEDFEMAVAKVM 650 (665)
Q Consensus 639 ~~d~~~Al~~~~ 650 (665)
.+++..++..+.
T Consensus 256 ~~~v~~~~~~~~ 267 (269)
T TIGR03015 256 GEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 184
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.8e-08 Score=108.70 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=117.0
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-------eE-EE
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FI-RV 444 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~-------li-rv 444 (665)
..+..++++.|.+++.+.+..++.. | .-+..+||+||+|+|||++|+.+|+.+-+. .. ..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 3466788899999999999887754 1 334579999999999999999999987541 10 00
Q ss_pred ---echh-----------hh---hhh-hc-------cchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCC
Q psy15936 445 ---SGSE-----------LV---QKF-IG-------EGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGG 495 (665)
Q Consensus 445 ---~~~d-----------l~---~~~-~g-------~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~ 495 (665)
.|.. +. ... .. -....++.+..... .....|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 1110 00 000 00 00122333332222 23457999999997632
Q ss_pred ChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEE
Q psy15936 496 DSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIE 575 (665)
Q Consensus 496 ~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~ 575 (665)
...+. |+..++...... .+|..|+.++.+.+.+++ |+ ..+.
T Consensus 156 --~aana---LLk~LEEpp~~~-------------------------------~fiLit~~~~~llptIrS--Rc-~~i~ 196 (351)
T PRK09112 156 --NAANA---ILKTLEEPPARA-------------------------------LFILISHSSGRLLPTIRS--RC-QPIS 196 (351)
T ss_pred --HHHHH---HHHHHhcCCCCc-------------------------------eEEEEECChhhccHHHHh--hc-cEEE
Confidence 33333 444444322211 366667888888899988 87 6999
Q ss_pred eCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Q psy15936 576 FPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 623 (665)
Q Consensus 576 ~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~ 623 (665)
|++|+.++..+++.......+++. .....++..+.| +++....++.
T Consensus 197 l~pl~~~~~~~~L~~~~~~~~~~~-~~~~~i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 197 LKPLDDDELKKALSHLGSSQGSDG-EITEALLQRSKG-SVRKALLLLN 242 (351)
T ss_pred ecCCCHHHHHHHHHHhhcccCCCH-HHHHHHHHHcCC-CHHHHHHHHh
Confidence 999999999999987432222111 225567777776 5555555554
No 185
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=4.5e-08 Score=106.10 Aligned_cols=185 Identities=19% Similarity=0.192 Sum_probs=115.6
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE-----------
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI----------- 442 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li----------- 442 (665)
.+.+++++.|.+..++.+.+++.. -.-+-.+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 467888999999999999887754 134557999999999999999999997732100
Q ss_pred --EE--ech-----------hhhhhhh---cc--------chHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCC
Q psy15936 443 --RV--SGS-----------ELVQKFI---GE--------GSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESG 492 (665)
Q Consensus 443 --rv--~~~-----------dl~~~~~---g~--------~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~ 492 (665)
.+ .|. |+..-.+ .. ....++.+...+. ...+.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 010 1000000 00 1122344433322 2457899999999753
Q ss_pred CCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeE
Q psy15936 493 SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDR 572 (665)
Q Consensus 493 ~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~ 572 (665)
....+.+...++.. .... .+|.+|+.++.+.+.+++ |+ .
T Consensus 155 ----~~aanaLLK~LEep---p~~~-------------------------------~~IL~t~~~~~llpti~S--Rc-~ 193 (365)
T PRK07471 155 ----ANAANALLKVLEEP---PARS-------------------------------LFLLVSHAPARLLPTIRS--RC-R 193 (365)
T ss_pred ----HHHHHHHHHHHhcC---CCCe-------------------------------EEEEEECCchhchHHhhc--cc-e
Confidence 33444444444432 2111 478889889889899888 77 5
Q ss_pred EEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Q psy15936 573 KIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 622 (665)
Q Consensus 573 ~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~ 622 (665)
.+.|++|+.++..+++...... ..+..+..++..+.| +++....++
T Consensus 194 ~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 194 KLRLRPLAPEDVIDALAAAGPD---LPDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred EEECCCCCHHHHHHHHHHhccc---CCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 8999999999999988875421 111123466777766 455444444
No 186
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.92 E-value=2.7e-08 Score=114.66 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=67.6
Q ss_pred EEEEEeCCC--CCCCccccCCCCee---EEEEeC---CCCHHHHHHHHHHhh---ccCCCCCCCCHHHHHHHC------C
Q psy15936 549 KVIMATNRI--DILDPALLRPGRID---RKIEFP---PPNEEARLDILRIHS---RKMNLTRGINLRKIAELM------P 611 (665)
Q Consensus 549 ~VIatTn~~--~~Ld~aLlr~gRfd---~~I~~~---~P~~eer~~Il~~~l---~~~~~~~~vdl~~la~~t------~ 611 (665)
++|+++|.. ..++++|++ ||+ ..+.|+ +.+.+.+.++++.+. +..+....++-+.+.... .
T Consensus 270 rvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 270 ILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred EEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 688888864 578999998 998 666664 334566665655433 223222233332222211 1
Q ss_pred C------CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 612 G------ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 612 g------~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
| .+.++|..+|++|...|..+++..|+.+|+.+|++....
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 1 357999999999988888888889999999999886644
No 187
>KOG0991|consensus
Probab=98.90 E-value=1e-08 Score=100.99 Aligned_cols=180 Identities=19% Similarity=0.283 Sum_probs=111.1
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-C----CceEE
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-E----CTFIR 443 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-~----~~lir 443 (665)
+++...+..++++.|.++.+.++.-+... | .-.++++.||||+||||-+.++|+++ | -+++.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 67888888899999999999988654432 2 44579999999999999999999976 4 35667
Q ss_pred EechhhhhhhhccchHHHHHHHHHHHhc----CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcc
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI 519 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a~~~----~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i 519 (665)
++.++-..- ...+..-..|.+-+-. ..+|+++||.|++. .++ |+.+...++ -++...
T Consensus 84 LNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-------~gA----QQAlRRtME---iyS~tt-- 144 (333)
T KOG0991|consen 84 LNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-------AGA----QQALRRTME---IYSNTT-- 144 (333)
T ss_pred ccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-------hHH----HHHHHHHHH---HHcccc--
Confidence 777653211 1112223344443322 23699999999752 222 222222222 122221
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCC
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~ 599 (665)
++..++|..+.+-..+.+ |+. .+.+...+..+...-+....+...+..
T Consensus 145 -----------------------------RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y 192 (333)
T KOG0991|consen 145 -----------------------------RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY 192 (333)
T ss_pred -----------------------------hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC
Confidence 578889999888888887 663 566666666665554444444333332
Q ss_pred C-CCHHHHHHHCCC
Q psy15936 600 G-INLRKIAELMPG 612 (665)
Q Consensus 600 ~-vdl~~la~~t~g 612 (665)
. ..++.+.-..+|
T Consensus 193 t~dgLeaiifta~G 206 (333)
T KOG0991|consen 193 TDDGLEAIIFTAQG 206 (333)
T ss_pred CcchHHHhhhhccc
Confidence 1 225555544444
No 188
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.90 E-value=4.6e-08 Score=109.89 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=124.1
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----------------
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------------- 439 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~----------------- 439 (665)
.|+++.|+...++.+.-. +..+.+++|.||||||||++|+.++..+.+
T Consensus 190 d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 577888888776655222 235568999999999999999999875421
Q ss_pred -----------ceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHH
Q psy15936 440 -----------TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 508 (665)
Q Consensus 440 -----------~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~ 508 (665)
+|..+.+........|.........+.. ....++|+||++.+. ...+..|.+.++
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~l---A~~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISL---AHNGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhc---cCCCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 1111111111111111111111112222 234699999999653 355566666554
Q ss_pred hhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-----C------------------CCCcccc
Q psy15936 509 QLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-----D------------------ILDPALL 565 (665)
Q Consensus 509 ~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-----~------------------~Ld~aLl 565 (665)
.-. + .++. ++.. .. + .+-..+|+++|+. . .+...|+
T Consensus 321 ~~~-v-------~i~r-~g~~-------~~----~-pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pll 379 (499)
T TIGR00368 321 DGS-I-------SISR-ASAK-------IF----Y-PARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFL 379 (499)
T ss_pred cCc-E-------EEEe-cCcc-------ee----c-cCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHH
Confidence 311 0 0000 0000 00 0 1112688888752 1 4777888
Q ss_pred CCCCeeEEEEeCCCCHHHH-------------HHHHHH------hhccC---CCCCCCCHHHH----------------H
Q psy15936 566 RPGRIDRKIEFPPPNEEAR-------------LDILRI------HSRKM---NLTRGINLRKI----------------A 607 (665)
Q Consensus 566 r~gRfd~~I~~~~P~~eer-------------~~Il~~------~l~~~---~~~~~vdl~~l----------------a 607 (665)
+ |||..+.++.++.++. .++.+. .+.+. .+...+....+ +
T Consensus 380 D--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a 457 (499)
T TIGR00368 380 D--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGA 457 (499)
T ss_pred h--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHH
Confidence 8 9999999998765432 222221 11111 11111111111 1
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
....++|.|....+++-|...|-.++...|+.+|+.+|+.
T Consensus 458 ~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 458 LNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 1234589999999999999999999999999999999984
No 189
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=5.5e-08 Score=103.69 Aligned_cols=170 Identities=14% Similarity=0.206 Sum_probs=108.4
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc--------eEEEechh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------FIRVSGSE 448 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------lirv~~~d 448 (665)
+|+++.|++..++.+...+.. -.-+..+||+||+|+|||++|+++|..+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 477889999999999887743 2345578999999999999999999976332 22221110
Q ss_pred hhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccc
Q psy15936 449 LVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCT 524 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~ 524 (665)
. ..-....++.+...+. .....|++||++|.+.. ..++ .|+..++.-....
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~n---aLLK~LEepp~~t------- 124 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQN---AFLKTIEEPPKGV------- 124 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHH---HHHHHhcCCCCCe-------
Confidence 0 0011223455544332 23456999999987532 3334 4444444322111
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHH
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLR 604 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~ 604 (665)
.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++....+...+.. ++ .....
T Consensus 125 ------------------------~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~ 174 (313)
T PRK05564 125 ------------------------FIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKK 174 (313)
T ss_pred ------------------------EEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHH
Confidence 466677778999999998 77 58999999999988877765432 22 22255
Q ss_pred HHHHHCCCC
Q psy15936 605 KIAELMPGA 613 (665)
Q Consensus 605 ~la~~t~g~ 613 (665)
.++..+.|.
T Consensus 175 ~l~~~~~g~ 183 (313)
T PRK05564 175 SAIAFSDGI 183 (313)
T ss_pred HHHHHcCCC
Confidence 667777663
No 190
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=5e-08 Score=112.21 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=124.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhhhhhhhccch--HHHH-H--HHHH--HHhcCCeEEEEcCcccc
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELVQKFIGEGS--RMVR-E--LFVM--AREHAPSIIFMDEIDSI 484 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl~~~~~g~~~--~~~~-~--if~~--a~~~~p~VlliDEID~l 484 (665)
.+|||.|+||||||++|++++..++. +|+++.........+|... .... . .|+. .......++|+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998764 5887764222222222210 0000 0 0000 00122359999999975
Q ss_pred ccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---CCC
Q psy15936 485 GSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---ILD 561 (665)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---~Ld 561 (665)
++..+..|.+++..-.- .+.-.|... -..+...+|+|+|..+ .+.
T Consensus 97 -----------~~~~q~~Ll~al~~g~v---------~i~r~G~~~------------~~p~~f~lIAt~np~e~~g~L~ 144 (589)
T TIGR02031 97 -----------DDGLSNRLLQALDEGVV---------IVEREGISV------------VHPAKFALIATYDPAEGGGGLP 144 (589)
T ss_pred -----------CHHHHHHHHHHHHcCCe---------EEEECCCce------------eecCceEEEEecCCccccCCCC
Confidence 34666677776653210 000000000 0001116888888765 688
Q ss_pred ccccCCCCeeEEEEeC-CCCHHHHHHHHHHhhccC-------------------------CCCCCCCHHHHHHHC--CCC
Q psy15936 562 PALLRPGRIDRKIEFP-PPNEEARLDILRIHSRKM-------------------------NLTRGINLRKIAELM--PGA 613 (665)
Q Consensus 562 ~aLlr~gRfd~~I~~~-~P~~eer~~Il~~~l~~~-------------------------~~~~~vdl~~la~~t--~g~ 613 (665)
++|+. ||+..+.+. .|+.++|.+|++.++... .++++ .+..++..+ .|.
T Consensus 145 ~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv 221 (589)
T TIGR02031 145 DHLLD--RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGI 221 (589)
T ss_pred HHHHH--hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCC
Confidence 99999 999887776 567788899988765211 11111 122333322 233
Q ss_pred C-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 614 S-GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 614 s-~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
+ .+....+++.|...|..+++..|+.+|+..|+.-++..
T Consensus 222 ~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 222 SGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred CCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence 3 56666788889999999999999999999999988754
No 191
>PRK04132 replication factor C small subunit; Provisional
Probab=98.83 E-value=5.1e-08 Score=114.66 Aligned_cols=156 Identities=20% Similarity=0.268 Sum_probs=111.1
Q ss_pred EEEeC--CCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhc------CCeEEEEcCcc
Q psy15936 416 VLLYG--PPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREH------APSIIFMDEID 482 (665)
Q Consensus 416 vLL~G--ppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~------~p~VlliDEID 482 (665)
-+..| |++.||||+|.++|+++ +..++.+++++... ...++.+...+... ...|++|||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 34557 99999999999999997 56799999998421 12344444433221 23699999999
Q ss_pred ccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCc
Q psy15936 483 SIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP 562 (665)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~ 562 (665)
.+.. ..++.+..+++. .++. + .+|++||.++.+.+
T Consensus 641 ~Lt~-----------~AQnALLk~lEe---p~~~--~-----------------------------~FILi~N~~~kIi~ 675 (846)
T PRK04132 641 ALTQ-----------DAQQALRRTMEM---FSSN--V-----------------------------RFILSCNYSSKIIE 675 (846)
T ss_pred cCCH-----------HHHHHHHHHhhC---CCCC--e-----------------------------EEEEEeCChhhCch
Confidence 7632 345555555543 2221 1 68999999999999
Q ss_pred cccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q psy15936 563 ALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAG 626 (665)
Q Consensus 563 aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~ 626 (665)
++++ |+ ..+.|++|+.++....++..+...++. ++..+..++..+.| +.+..-++++.++
T Consensus 676 tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 676 PIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9998 87 689999999999999999888765543 23357888888887 5566666666554
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.82 E-value=4.5e-09 Score=98.08 Aligned_cols=127 Identities=33% Similarity=0.420 Sum_probs=69.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh--hhccchHH------HHHHHHHHHhcCCeEEEEcCcccccc
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK--FIGEGSRM------VRELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~--~~g~~~~~------~~~if~~a~~~~p~VlliDEID~l~~ 486 (665)
+|+|+||||||||++|+.+|+.++.+++.+.+...... +.+.-.-. ....+..+. ..+.++++||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 58999999999999999999999999998887653211 11110000 000000000 14679999999963
Q ss_pred CCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC----CCCc
Q psy15936 487 SRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID----ILDP 562 (665)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~----~Ld~ 562 (665)
++++...+..+++.-.-. +.+. .........+.......+|+|+|+.+ .+++
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~---------~~~~------~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~ 133 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQ---------LPEG------GEEIKEPNNDLASPNFRIIATMNPRDKGRKELSP 133 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEE---------E-TS------SSEEE--TT------EEEEEEESSST--TTTTCH
T ss_pred ---------CHHHHHHHHHHHhhCccc---------ccCC------CcEEecCcccccccceEEEEEEcCCCCCcCcCCH
Confidence 345555666666432110 0000 00000001111111237999999988 8999
Q ss_pred cccCCCCe
Q psy15936 563 ALLRPGRI 570 (665)
Q Consensus 563 aLlr~gRf 570 (665)
+|++ ||
T Consensus 134 al~~--Rf 139 (139)
T PF07728_consen 134 ALLD--RF 139 (139)
T ss_dssp HHHT--T-
T ss_pred HHHh--hC
Confidence 9999 87
No 193
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.82 E-value=4.9e-08 Score=103.98 Aligned_cols=148 Identities=26% Similarity=0.367 Sum_probs=95.3
Q ss_pred cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC----------------------
Q psy15936 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------------------- 438 (665)
Q Consensus 381 i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~---------------------- 438 (665)
+.|.+.....+...... .| .-+..+||+||||+|||++|.++|+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~----------~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 3 LVPWQEAVKRLLVQALE----------SG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred cccchhHHHHHHHHHHh----------cC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 44556666666555532 11 2223599999999999999999999886
Q ss_pred --CceEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 439 --CTFIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 439 --~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
+.++.++.++....- -....++.+...... ....|+++||+|.+.. .....++..++.
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lEe 135 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE 135 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc
Confidence 567777776643321 122334444443322 3457999999997643 224445554444
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHH
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILR 589 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~ 589 (665)
.+... .+|.+||.++.+-+.+++ |+ ..+.|++|+........+
T Consensus 136 p~~~~-------------------------------~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 PPKNT-------------------------------RFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCCe-------------------------------EEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 33322 589999999999999998 77 578888866655544444
No 194
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.82 E-value=3.7e-08 Score=97.01 Aligned_cols=143 Identities=24% Similarity=0.354 Sum_probs=91.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCc------------------------eEEEechhhhhhhhccchHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECT------------------------FIRVSGSELVQKFIGEGSRMVRELFVM 467 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~------------------------lirv~~~dl~~~~~g~~~~~~~~if~~ 467 (665)
.+..+||+||+|+|||++|+.++..+... +..+....- ......++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-----~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-----SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-----cCCHHHHHHHHHH
Confidence 44679999999999999999999987432 111111000 0112344444544
Q ss_pred HHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhh
Q psy15936 468 ARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDF 543 (665)
Q Consensus 468 a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df 543 (665)
+.. ....++++||+|.+.. .. ...|+..++..+...
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-----------~~---~~~Ll~~le~~~~~~-------------------------- 127 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-----------AA---ANALLKTLEEPPPNT-------------------------- 127 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-----------HH---HHHHHHHhcCCCCCe--------------------------
Confidence 432 3456999999997633 22 334555554432211
Q ss_pred hccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 544 ~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.+|++|+.+..+.+++++ |+ ..+.|++|+.++..+++... ++++ ..+..++..+.|
T Consensus 128 -----~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 128 -----LFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred -----EEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 367777777899999998 77 48999999999999888876 3332 236666666665
No 195
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=1e-07 Score=109.42 Aligned_cols=225 Identities=14% Similarity=0.168 Sum_probs=129.1
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE-Ee-
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR-VS- 445 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir-v~- 445 (665)
.+.+...+..++++.|.++.++.++.++.-. .++..++..++|+||||||||++++.+|..++..+.. .+
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 4678889999999999999999998887541 1233455669999999999999999999988765432 11
Q ss_pred --chhh----------hhh--hhccchHHHHHHHHHHH----------hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 446 --GSEL----------VQK--FIGEGSRMVRELFVMAR----------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 446 --~~dl----------~~~--~~g~~~~~~~~if~~a~----------~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
+... ... ...........++..+. .....|+++||++.+... . ..
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~----~~ 213 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------D----TR 213 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------h----HH
Confidence 1000 000 01122233334444433 124569999999865321 1 11
Q ss_pred HHHHHHH-hhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC--------------CCCccccC
Q psy15936 502 TMLELLN-QLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID--------------ILDPALLR 566 (665)
Q Consensus 502 ~l~~Ll~-~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~--------------~Ld~aLlr 566 (665)
.+..++. .... .+. + ..|+++|..+. .+.+++++
T Consensus 214 ~lq~lLr~~~~e-~~~--~----------------------------pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls 262 (637)
T TIGR00602 214 ALHEILRWKYVS-IGR--C----------------------------PLVFIITESLEGDNNQRRLLFPAETIMNKEILE 262 (637)
T ss_pred HHHHHHHHHhhc-CCC--c----------------------------eEEEEecCCccccccccccccchhcccCHhHhc
Confidence 2333333 1111 111 1 02344442221 13467775
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHHHhhccCCC--CCC------CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh------
Q psy15936 567 PGRIDRKIEFPPPNEEARLDILRIHSRKMNL--TRG------INLRKIAELMPGASGAEVKGVCTEAGMYALRE------ 632 (665)
Q Consensus 567 ~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~--~~~------vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~------ 632 (665)
..|+ ..|.|++.+.......|+..+..... ..+ ..+..|+.... +|++.++..-...+.+.
T Consensus 263 ~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~~~~g~~a~~ 337 (637)
T TIGR00602 263 EPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQFSSSKSGSLPIK 337 (637)
T ss_pred ccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHHhcCCccccc
Confidence 3455 38999999999988888877765321 111 23556666544 48887777665554332
Q ss_pred -cCCCCCHHHHHHHHH
Q psy15936 633 -RRVHVTQEDFEMAVA 647 (665)
Q Consensus 633 -~~~~It~~d~~~Al~ 647 (665)
+...++..+...+..
T Consensus 338 ~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 338 KRMSTKSDAHASKSKI 353 (637)
T ss_pred cccccccHHHhhhccc
Confidence 233455555555443
No 196
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.80 E-value=1.3e-07 Score=94.01 Aligned_cols=197 Identities=22% Similarity=0.306 Sum_probs=121.7
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
+....+....++.|.+.+++.+.+..+ .|- ...+..+|||+|..|||||+|++|+..+. +..++.++.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~-------~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTE-------QFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHH-------HHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 444556777889999999988755433 333 23567899999999999999999998876 466888888
Q ss_pred hhhhhhhhccchHHHHHHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccccc
Q psy15936 447 SELVQKFIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTE 525 (665)
Q Consensus 447 ~dl~~~~~g~~~~~~~~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~e 525 (665)
.++.. +-.++...+. ....|+|+||+-- ...+ .. ...|-..++|- +...+.
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~gd-~~---yK~LKs~LeG~-----ve~rP~- 173 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSF---------EEGD-DA---YKALKSALEGG-----VEGRPA- 173 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCC---------CCCc-hH---HHHHHHHhcCC-----cccCCC-
Confidence 77642 2344444443 3356999999641 1111 11 23333344442 111111
Q ss_pred chhhhhhhhhcccchhhhhccccEEEEEeCCCCCCC--------------------ccccCCCCeeEEEEeCCCCHHHHH
Q psy15936 526 AGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD--------------------PALLRPGRIDRKIEFPPPNEEARL 585 (665)
Q Consensus 526 Ag~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld--------------------~aLlr~gRfd~~I~~~~P~~eer~ 585 (665)
.+.|-+|+|+...++ ..+-=+.||+..+.|.+++.++-.
T Consensus 174 ---------------------NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL 232 (287)
T COG2607 174 ---------------------NVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYL 232 (287)
T ss_pred ---------------------eEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHH
Confidence 113556666554443 222213499999999999999999
Q ss_pred HHHHHhhccCCCCCCC-CHH--HH--HHHCCCCCHHHHHHHHHH
Q psy15936 586 DILRIHSRKMNLTRGI-NLR--KI--AELMPGASGAEVKGVCTE 624 (665)
Q Consensus 586 ~Il~~~l~~~~~~~~v-dl~--~l--a~~t~g~s~~dl~~l~~~ 624 (665)
.|+..+++..+++-+. .++ .+ |..-.|-||+-..+.++.
T Consensus 233 ~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 233 KIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHH
Confidence 9999999988876431 121 11 222234566655555543
No 197
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.77 E-value=2.5e-07 Score=96.16 Aligned_cols=222 Identities=18% Similarity=0.256 Sum_probs=132.3
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC---------Cc
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CT 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~---------~~ 440 (665)
|..+...+|=......+..+++.+.+..| .-.+..++||+|++|.|||++++.++..-. .+
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~P 97 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIP 97 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCcccc
Confidence 44455666644444445555555555443 334556899999999999999999986431 35
Q ss_pred eEEEechh------hhhh--------h-h-ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHH
Q psy15936 441 FIRVSGSE------LVQK--------F-I-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504 (665)
Q Consensus 441 lirv~~~d------l~~~--------~-~-g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~ 504 (665)
++.+.+.. +... + . .........+....+.....+++|||++.+... ....++.+.
T Consensus 98 Vv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~L 169 (302)
T PF05621_consen 98 VVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFL 169 (302)
T ss_pred EEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHH
Confidence 66654432 1111 0 0 111222334445556678899999999975431 223355555
Q ss_pred HHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC-C--CCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN-R--IDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 505 ~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn-~--~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
.+++.+..- -.+. .|.+.|. . .=.-|+.+-+ ||+ .+.+|....
T Consensus 170 n~LK~L~Ne---L~ip----------------------------iV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~ 215 (302)
T PF05621_consen 170 NALKFLGNE---LQIP----------------------------IVGVGTREAYRALRTDPQLAS--RFE-PFELPRWEL 215 (302)
T ss_pred HHHHHHhhc---cCCC----------------------------eEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCC
Confidence 555544221 0111 1222221 1 1123677777 885 566664443
Q ss_pred -HHHHHHHHHhhccCCCCCC--CCH----HHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 582 -EARLDILRIHSRKMNLTRG--INL----RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 582 -eer~~Il~~~l~~~~~~~~--vdl----~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
++...++..+-..+++... +.. ..|-..+.|. -+++..+++.|+..|++.+...||.+.+..
T Consensus 216 d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 216 DEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred CcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 4556677777766665532 222 3455567774 578999999999999999999999998875
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=5.3e-08 Score=88.77 Aligned_cols=74 Identities=34% Similarity=0.598 Sum_probs=55.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCc---eEEEechhhhhh--------------hhccchHHHHHHHHHHHhcCCeE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSGSELVQK--------------FIGEGSRMVRELFVMAREHAPSI 475 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv~~~dl~~~--------------~~g~~~~~~~~if~~a~~~~p~V 475 (665)
+..++|+||||||||++++.++..+... ++.+++...... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998765 777766543221 12233445567777777777899
Q ss_pred EEEcCcccccc
Q psy15936 476 IFMDEIDSIGS 486 (665)
Q Consensus 476 lliDEID~l~~ 486 (665)
+++||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999997644
No 199
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-07 Score=107.78 Aligned_cols=202 Identities=23% Similarity=0.322 Sum_probs=136.7
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceEEE
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFIRV 444 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~lirv 444 (665)
....+-++|-+++++++.+.+.. ....+-+|.|+||+|||.++..+|... +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34556788999999999887765 234456788999999999999999864 4566777
Q ss_pred echhhh--hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccc
Q psy15936 445 SGSELV--QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGV 522 (665)
Q Consensus 445 ~~~dl~--~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~v 522 (665)
+...+. .+|-|+.+..++.++.......+.|+||||++.+.+.....+ + .-+..+.+.-.|...+ +
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGe-------L--- 300 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGE-------L--- 300 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCC-------e---
Confidence 776664 358899999999999998887789999999999877542222 1 2334444444443211 2
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNL 597 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~ 597 (665)
.+|+||...+ .=|+||-| || ..|.+.-|+.++-..|++-.-..+..
T Consensus 301 --------------------------~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 301 --------------------------RCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred --------------------------EEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 5777775332 23899999 99 58999999999999999866554332
Q ss_pred CCCCC-----HHHHHHHCC-----CCCHHHHHHHHHHHHHHHH
Q psy15936 598 TRGIN-----LRKIAELMP-----GASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 598 ~~~vd-----l~~la~~t~-----g~s~~dl~~l~~~A~~~A~ 630 (665)
-..+- +...+..+. -+-|.-.-.++.+|+....
T Consensus 352 hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 352 HHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred ccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 22211 222233222 2334444566666665443
No 200
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1e-07 Score=101.40 Aligned_cols=183 Identities=17% Similarity=0.209 Sum_probs=116.3
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCce----------EEEec
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF----------IRVSG 446 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l----------irv~~ 446 (665)
.|+++.|++.+++.+.+.+.. -.-+..+||+||+|+||+++|.++|..+-+.- ...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 477899999999999888854 13456899999999999999999998763210 01111
Q ss_pred hhhhhhhh-----c--------------------cchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCCh
Q psy15936 447 SELVQKFI-----G--------------------EGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDS 497 (665)
Q Consensus 447 ~dl~~~~~-----g--------------------~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~ 497 (665)
+|+..-.+ | -....++.+...+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 11110000 0 00123444444332 23457999999997632
Q ss_pred HHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeC
Q psy15936 498 EVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFP 577 (665)
Q Consensus 498 ~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~ 577 (665)
...+.+...+ +... .. .+|..|+.++.+-+.+++ |+ ..+.|+
T Consensus 139 ~aaNaLLK~L---EEPp-~~-------------------------------~fILi~~~~~~Ll~TI~S--Rc-q~i~f~ 180 (314)
T PRK07399 139 AAANALLKTL---EEPG-NG-------------------------------TLILIAPSPESLLPTIVS--RC-QIIPFY 180 (314)
T ss_pred HHHHHHHHHH---hCCC-CC-------------------------------eEEEEECChHhCcHHHHh--hc-eEEecC
Confidence 3334444444 4332 11 377788889999999999 77 689999
Q ss_pred CCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Q psy15936 578 PPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 623 (665)
Q Consensus 578 ~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~ 623 (665)
+|+.++..+++......... +.+...++....| +++....+++
T Consensus 181 ~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 181 RLSDEQLEQVLKRLGDEEIL--NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred CCCHHHHHHHHHHhhccccc--hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 99999999998875432111 1234677887777 5555555554
No 201
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.70 E-value=5.1e-07 Score=101.26 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 648 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 648 (665)
..|.|.|....+++-|...|..+++..|+.+|+.+|+.-
T Consensus 453 ~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 453 HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 347899999999999999999999999999999999864
No 202
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.68 E-value=4.8e-08 Score=94.85 Aligned_cols=74 Identities=31% Similarity=0.396 Sum_probs=49.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC----ceEEEechhhhhhhhccchHHHHHHHHH----HHhcCCeEEEEcCccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSELVQKFIGEGSRMVRELFVM----AREHAPSIIFMDEIDS 483 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~----~lirv~~~dl~~~~~g~~~~~~~~if~~----a~~~~p~VlliDEID~ 483 (665)
|-..+||+||+|||||.+|+++|+.+.. ++++++++.+.... .....+..++.. .......|+++||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457899999999999999999999996 99999999876511 111111111111 0111224999999999
Q ss_pred cccC
Q psy15936 484 IGSS 487 (665)
Q Consensus 484 l~~~ 487 (665)
..+.
T Consensus 80 a~~~ 83 (171)
T PF07724_consen 80 AHPS 83 (171)
T ss_dssp CSHT
T ss_pred cccc
Confidence 7654
No 203
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2.1e-07 Score=99.60 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=93.1
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCc------------------------eEEEechhhhhhhhccchHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECT------------------------FIRVSGSELVQKFIGEGSRMVRELFV 466 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~------------------------lirv~~~dl~~~~~g~~~~~~~~if~ 466 (665)
.-+..+||+||+|+||+++|+++|..+.+. ++.+...+-. ..-....++++..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~---~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD---KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC---CCCCHHHHHHHHH
Confidence 345579999999999999999999987431 1111110000 0012234455544
Q ss_pred HHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhh
Q psy15936 467 MAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542 (665)
Q Consensus 467 ~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~d 542 (665)
.+. .....|++||++|++.. .. .+.|+..++.-.+. .
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-----------~a---aNaLLK~LEEPp~~--~----------------------- 137 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-----------NA---ANALLKSLEEPSGD--T----------------------- 137 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-----------HH---HHHHHHHHhCCCCC--e-----------------------
Confidence 433 23467999999997643 33 34444444443221 1
Q ss_pred hhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 543 f~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.+|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...... ..+.+...++..+.|
T Consensus 138 ------~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 138 ------VLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred ------EEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 588999999999999999 88 46999999999888888755321 122234455666666
No 204
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.65 E-value=3.7e-07 Score=104.42 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=124.3
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ 451 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~ 451 (665)
...++.+.|.+...+++.+.+... ......|||+|++||||+++|+++.... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 346678889998888887777541 1356689999999999999999998864 57999999987532
Q ss_pred hh-----hccchHH-------HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccC
Q psy15936 452 KF-----IGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATK 517 (665)
Q Consensus 452 ~~-----~g~~~~~-------~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~ 517 (665)
.. .|..... ....+.. .....+|+|||+.+. ...|..+..++..-.. ..+..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCc
Confidence 11 1110000 0001122 235689999999763 3566667666653210 11111
Q ss_pred ccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCC--HHHHHHH
Q psy15936 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPN--EEARLDI 587 (665)
Q Consensus 518 ~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~--~eer~~I 587 (665)
.+. .-.++|++|+.. ..+.+.|.. |+. ..|.+|+.. .++...+
T Consensus 327 ~~~-------------------------~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L 379 (534)
T TIGR01817 327 TLK-------------------------VDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLL 379 (534)
T ss_pred eEe-------------------------ecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHH
Confidence 000 011688888653 123333333 443 256666665 3555667
Q ss_pred HHHhhccC----CCCCCCCH---HHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy15936 588 LRIHSRKM----NLTRGINL---RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 643 (665)
Q Consensus 588 l~~~l~~~----~~~~~vdl---~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 643 (665)
+++++... +....++- ..|..+.=.-+.++|+++++.|+..+ ....|+.+|+.
T Consensus 380 ~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 380 AEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 77666542 21123333 33333321226688888888886543 45578888875
No 205
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.6e-07 Score=91.69 Aligned_cols=68 Identities=29% Similarity=0.473 Sum_probs=45.9
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhh-CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~-g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
-+.|++++++.+--++.--..++.+-+.+ .---|+++|..||+|+|||.+|+-+|...+.||+.+.+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEAT 84 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEAT 84 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEee
Confidence 37899999988733332200000000111 112478999999999999999999999999999886543
No 206
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.64 E-value=2.5e-07 Score=101.39 Aligned_cols=140 Identities=24% Similarity=0.366 Sum_probs=75.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEe---------chhhhhhh-hcc-c----hHHHHHHHHHHHhc--C
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVS---------GSELVQKF-IGE-G----SRMVRELFVMAREH--A 472 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~---------~~dl~~~~-~g~-~----~~~~~~if~~a~~~--~ 472 (665)
..++++|+||||||||++|+.+|..+.. .+.++. ..++...+ ++. + ......+...|... .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 4678999999999999999999998742 222221 11222111 110 0 01223344455433 4
Q ss_pred CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCc-cc-CccccccccchhhhhhhhhcccchhhhhccccEE
Q psy15936 473 PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE-AT-KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550 (665)
Q Consensus 473 p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~-~~-~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~V 550 (665)
|.+++||||++-. ..+.+.+++..++.-. +. ..+.....+... ... .......|
T Consensus 273 ~~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~-----e~f------~iP~Nl~I 328 (459)
T PRK11331 273 KYVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDE-----ERF------YVPENVYI 328 (459)
T ss_pred CcEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeecccccc-----ccc------cCCCCeEE
Confidence 7899999999632 2233444444443211 10 001100000000 000 11233368
Q ss_pred EEEeCCCC----CCCccccCCCCeeEEEEeCC
Q psy15936 551 IMATNRID----ILDPALLRPGRIDRKIEFPP 578 (665)
Q Consensus 551 IatTn~~~----~Ld~aLlr~gRfd~~I~~~~ 578 (665)
|+|+|..+ .+|.||+| ||. .|++.+
T Consensus 329 IgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 329 IGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred EEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 99999887 79999999 995 566664
No 207
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.63 E-value=6.6e-08 Score=88.13 Aligned_cols=82 Identities=30% Similarity=0.468 Sum_probs=44.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEech-hhhh-hhhcc---chHHHHHHHHHHH-hcCCeEEEEcCccccccCC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS-ELVQ-KFIGE---GSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSR 488 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~-dl~~-~~~g~---~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~ 488 (665)
++||.|+||+|||++|+++|..++..|.|+.+. ++.- ...|. .... ..|...+ .-...++++|||++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~--~~f~~~~GPif~~ill~DEiNr----- 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET--GEFEFRPGPIFTNILLADEINR----- 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT--TEEEEEE-TT-SSEEEEETGGG-----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC--CeeEeecChhhhceeeeccccc-----
Confidence 589999999999999999999999999998764 3321 11111 0000 0000000 00124999999996
Q ss_pred cCCCCCCChHHHHHHHHHHHh
Q psy15936 489 IESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
+.+..|..+.+.+..
T Consensus 74 ------appktQsAlLeam~E 88 (131)
T PF07726_consen 74 ------APPKTQSALLEAMEE 88 (131)
T ss_dssp ------S-HHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHc
Confidence 455677777776653
No 208
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.62 E-value=4.6e-07 Score=97.12 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=113.3
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh--
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK-- 452 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~-- 452 (665)
++++.|.+...+++.+.+... ......|||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 456778888888887777541 2456789999999999999999997654 478999999875321
Q ss_pred ---hhccchH-------HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccCccc
Q psy15936 453 ---FIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATKNIK 520 (665)
Q Consensus 453 ---~~g~~~~-------~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~~i~ 520 (665)
+.|.... .....+.. .....+|+|||+.+. ...|..+..+++.-.. ..+.....
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 1111000 00112222 335689999999763 3556666666654210 11111010
Q ss_pred cccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCCH--HHHHHHHHH
Q psy15936 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPNE--EARLDILRI 590 (665)
Q Consensus 521 ~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~~--eer~~Il~~ 590 (665)
. -.+||++|+.. ..+.+.|.. ||. ..|.+|+... ++...++.+
T Consensus 140 ~-------------------------~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~ 192 (326)
T PRK11608 140 V-------------------------NVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEH 192 (326)
T ss_pred c-------------------------cEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHH
Confidence 0 11688888653 234556655 663 3555555443 344455666
Q ss_pred hhcc----CCCC--CCCCHHHHHHHCC---CCCHHHHHHHHHHHHHH
Q psy15936 591 HSRK----MNLT--RGINLRKIAELMP---GASGAEVKGVCTEAGMY 628 (665)
Q Consensus 591 ~l~~----~~~~--~~vdl~~la~~t~---g~s~~dl~~l~~~A~~~ 628 (665)
++.. .+.. ..++-+.+..... --+-++|++++++|+..
T Consensus 193 fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 193 FAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 5533 2221 2344443333222 22568888888887754
No 209
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.62 E-value=2.7e-07 Score=104.45 Aligned_cols=109 Identities=24% Similarity=0.383 Sum_probs=73.8
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHh-----------hCCceEEE
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----------TECTFIRV 444 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~-----------l~~~lirv 444 (665)
..|+++.|.+...+++++.+... .....+|||+|++||||+++|+++-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 35677899999988888877541 134568999999999999999999776 45799999
Q ss_pred echhhhhh-----hhccchH--------HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 445 SGSELVQK-----FIGEGSR--------MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 445 ~~~dl~~~-----~~g~~~~--------~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
+|..+... ..|.... .....|+. .....+|+|||+.+. ...|..+..+++.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp-----------~~~Q~kLl~~L~e 348 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI---AHGGTLFLDEIGEMP-----------LPLQTRLLRVLEE 348 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhc---cCCCEEEEcChHhCC-----------HHHHHHHHhhhhc
Confidence 99875321 1111100 11123333 234689999999763 3556666666654
No 210
>KOG2035|consensus
Probab=98.61 E-value=8.7e-07 Score=89.79 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=118.9
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-CCc-------
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-ECT------- 440 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-~~~------- 440 (665)
|+|...+..++.+.+.++....++....- ..-.++++|||+|+||-|.+.++.+++ |..
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 56677777777777777777766554421 234589999999999999999998876 211
Q ss_pred ---eEEEech---------hhh-----hhhhccchHHHHHHHHHHHhc---------CCeEEEEcCccccccCCcCCCCC
Q psy15936 441 ---FIRVSGS---------ELV-----QKFIGEGSRMVRELFVMAREH---------APSIIFMDEIDSIGSSRIESGSG 494 (665)
Q Consensus 441 ---lirv~~~---------dl~-----~~~~g~~~~~~~~if~~a~~~---------~p~VlliDEID~l~~~~~~~~~~ 494 (665)
|..+... ..+ +.+...+.-.+.+++....+. ..++++|.|+|.+..
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-------- 141 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-------- 141 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH--------
Confidence 1111110 000 011222333445555544322 346999999997633
Q ss_pred CChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEE
Q psy15936 495 GDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKI 574 (665)
Q Consensus 495 ~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I 574 (665)
+.|..+.. .|+.+++ .| ++|..+|....+-+++++ |+ ..|
T Consensus 142 ---dAQ~aLRR---TMEkYs~------~~-------------------------RlIl~cns~SriIepIrS--RC-l~i 181 (351)
T KOG2035|consen 142 ---DAQHALRR---TMEKYSS------NC-------------------------RLILVCNSTSRIIEPIRS--RC-LFI 181 (351)
T ss_pred ---HHHHHHHH---HHHHHhc------Cc-------------------------eEEEEecCcccchhHHhh--he-eEE
Confidence 33333333 3333322 23 799999999999999998 66 579
Q ss_pred EeCCCCHHHHHHHHHHhhccCCCCCCCC-HHHHHHHCCC
Q psy15936 575 EFPPPNEEARLDILRIHSRKMNLTRGIN-LRKIAELMPG 612 (665)
Q Consensus 575 ~~~~P~~eer~~Il~~~l~~~~~~~~vd-l~~la~~t~g 612 (665)
.+|.|+.++...++...+.+.++.-..+ +..+|..++|
T Consensus 182 Rvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 182 RVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred eCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 9999999999999999998877664333 5667777766
No 211
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.60 E-value=2.6e-07 Score=104.61 Aligned_cols=217 Identities=16% Similarity=0.235 Sum_probs=121.9
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK 452 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~ 452 (665)
..|+++.|.+...+++++.+.. + .....+|||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------Y----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4577889999988888887754 1 1345689999999999999999997653 579999999865321
Q ss_pred -----hhccch--------HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccC
Q psy15936 453 -----FIGEGS--------RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATK 517 (665)
Q Consensus 453 -----~~g~~~--------~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~ 517 (665)
+.|... .....+|+. .....+|+|||+.+. ...|..+..++..-.- ..+..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhh---cCCceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 111110 011223333 234689999999763 3566667666654221 11111
Q ss_pred ccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC--CC-----CccccCCCCee-EEEEeCCCCH--HHHHHH
Q psy15936 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID--IL-----DPALLRPGRID-RKIEFPPPNE--EARLDI 587 (665)
Q Consensus 518 ~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~--~L-----d~aLlr~gRfd-~~I~~~~P~~--eer~~I 587 (665)
.+. .-.++|++|+..- .+ .+.|.. |+. ..|.+|++.. ++...+
T Consensus 344 ~~~-------------------------~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L 396 (526)
T TIGR02329 344 PVP-------------------------VDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPL 396 (526)
T ss_pred eee-------------------------ecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHH
Confidence 010 1126888886541 12 222222 332 2455554433 344455
Q ss_pred HHHhhccCCC--CCCCCHHH----------HHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy15936 588 LRIHSRKMNL--TRGINLRK----------IAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644 (665)
Q Consensus 588 l~~~l~~~~~--~~~vdl~~----------la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~ 644 (665)
+..++..... ...++-+. |..+.=--+-++|++++++++..+.......|+.+|+..
T Consensus 397 ~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 397 AAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 6666654321 11122222 222221226688999999887654322234677777643
No 212
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.60 E-value=4.6e-07 Score=97.17 Aligned_cols=196 Identities=20% Similarity=0.298 Sum_probs=107.7
Q ss_pred CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh-----
Q psy15936 382 GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF----- 453 (665)
Q Consensus 382 ~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~----- 453 (665)
.|.+...+++.+.+.. . ......|||+|++||||+++|+++-... +.+|+.++|..+....
T Consensus 2 iG~S~~m~~~~~~~~~----------~-a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSR----------L-APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4556666666665543 1 2356789999999999999999997654 4799999998653211
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCccccccc
Q psy15936 454 IGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKGVCT 524 (665)
Q Consensus 454 ~g~~~-------~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~vc~ 524 (665)
.|... ......|.. .....+|+|||+.+. ...|..+..+++.-. ...+...+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~---a~gGtL~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~----- 131 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFER---ADGGTLFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTL----- 131 (329)
T ss_pred hccccccccCcccccCCchhh---CCCCEEEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCcee-----
Confidence 11100 001112333 235789999999763 356666777665421 11111101
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCC--HHHHHHHHHHhhcc
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPN--EEARLDILRIHSRK 594 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~--~eer~~Il~~~l~~ 594 (665)
..-.++|++|+.. ..+.+.|.. |+. ..|.+|++. .++...+++.++..
T Consensus 132 --------------------~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~ 189 (329)
T TIGR02974 132 --------------------QVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIR 189 (329)
T ss_pred --------------------ccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHH
Confidence 0112688888653 234455554 563 245555444 24444555555543
Q ss_pred C----CCC--CCCCHHH---HHHHCCCCCHHHHHHHHHHHHHHH
Q psy15936 595 M----NLT--RGINLRK---IAELMPGASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 595 ~----~~~--~~vdl~~---la~~t~g~s~~dl~~l~~~A~~~A 629 (665)
. +.. ..++-+. |..+.=.-+.++|++++++|+..+
T Consensus 190 ~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 190 MARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 2 222 2334333 333321225688888888877654
No 213
>KOG1942|consensus
Probab=98.60 E-value=1.2e-06 Score=89.19 Aligned_cols=102 Identities=26% Similarity=0.282 Sum_probs=78.8
Q ss_pred EEEEEeCC-------------CCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCC
Q psy15936 549 KVIMATNR-------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGAS 614 (665)
Q Consensus 549 ~VIatTn~-------------~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s 614 (665)
.||++||+ |..+++.++. |+ ..|..-+++.++.++|+++..+..++. ++.-+..++.....-|
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 57777774 5677888888 77 567777888999999999988766654 2233777777766667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 615 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 615 ~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
-+...+++.-|...|-..++..|..+|+.++-+-.+...
T Consensus 404 LRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 404 LRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred HHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhch
Confidence 788888888888888888999999999998877665543
No 214
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=7.4e-08 Score=105.99 Aligned_cols=214 Identities=23% Similarity=0.328 Sum_probs=125.0
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV 450 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~ 450 (665)
...+|+++.|.+.+..++.+.... ....+.+||+.|.+||||..+|+++-+.. +.+|+.++|..+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 346788999999888887776643 34567789999999999999999997654 6899999998753
Q ss_pred hh-----hhcc--------chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh--cCCcc
Q psy15936 451 QK-----FIGE--------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL--DGFEA 515 (665)
Q Consensus 451 ~~-----~~g~--------~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~--d~~~~ 515 (665)
.. +.|. ........|+.| ...-+|+|||..+. ...|..+...++.- ....+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccCC-----------HHHHHHHHHHHhhceEEecCC
Confidence 22 1222 221123344443 23478999998753 35566666666532 22222
Q ss_pred cCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC--CCC-----CccccCCCCeeEEEEeCCCCHHHHH---
Q psy15936 516 TKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI--DIL-----DPALLRPGRIDRKIEFPPPNEEARL--- 585 (665)
Q Consensus 516 ~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~--~~L-----d~aLlr~gRfd~~I~~~~P~~eer~--- 585 (665)
...++ .-++||+|||+. +.+ -..|.= |+. ++.+..|...+|.
T Consensus 375 t~~~~-------------------------vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI 426 (560)
T COG3829 375 TKPIP-------------------------VDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDI 426 (560)
T ss_pred CCcee-------------------------eEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchH
Confidence 22221 112799999863 112 122211 332 6666666665554
Q ss_pred -HHHHHhhcc----CCCC-CCCCHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy15936 586 -DILRIHSRK----MNLT-RGINLRKIAE----LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 643 (665)
Q Consensus 586 -~Il~~~l~~----~~~~-~~vdl~~la~----~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 643 (665)
.+..+++.+ ++-. ..+.-+.++. ..+| +.|+|++++.++...+ .....|+.+|+.
T Consensus 427 ~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 427 PLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 334444443 2211 1222222222 3444 6799999999998643 223336666555
No 215
>KOG1514|consensus
Probab=98.59 E-value=1.8e-06 Score=97.32 Aligned_cols=198 Identities=19% Similarity=0.296 Sum_probs=126.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhC----------CceEEEechhhhhh----------hhccchHH------HHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTE----------CTFIRVSGSELVQK----------FIGEGSRM------VRELFVM 467 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~----------~~lirv~~~dl~~~----------~~g~~~~~------~~~if~~ 467 (665)
..+++.|-||||||..++.+.+.|. ..++.+++..+... +.|..... +..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 4688999999999999999988653 45666776554321 22221111 1111221
Q ss_pred H-HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhcc
Q psy15936 468 A-REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMA 546 (665)
Q Consensus 468 a-~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a 546 (665)
. ....++|++|||+|.|.... |.+|..+++....- .+
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt~~-~s------------------------------ 540 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPTLK-NS------------------------------ 540 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCcCC-CC------------------------------
Confidence 1 12346899999999887644 55666666654321 11
Q ss_pred ccEEEEEeCCCCCCCccccC---CCCeeE-EEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCH--HHHHH
Q psy15936 547 VAKVIMATNRIDILDPALLR---PGRIDR-KIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASG--AEVKG 620 (665)
Q Consensus 547 ~~~VIatTn~~~~Ld~aLlr---~gRfd~-~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~--~dl~~ 620 (665)
...||+.+|..+ ++..++. ..|++. +|.|.+++.++..+|+...+.....-..--.+.+|+.....|| +....
T Consensus 541 KLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRrald 619 (767)
T KOG1514|consen 541 KLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALD 619 (767)
T ss_pred ceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHH
Confidence 114666666544 3332221 126655 8999999999999999999987733322224455554444443 55668
Q ss_pred HHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHhhhcc
Q psy15936 621 VCTEAGMYALRERR-------VHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 621 l~~~A~~~A~~~~~-------~~It~~d~~~Al~~~~~~~~ 654 (665)
+|++|...|-.+.. ..++..|+.+|+..+....-
T Consensus 620 ic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 620 ICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 99999988877654 67999999999999987543
No 216
>KOG1051|consensus
Probab=98.59 E-value=5.4e-07 Score=105.51 Aligned_cols=111 Identities=30% Similarity=0.462 Sum_probs=87.5
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCC---CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh-
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIA---QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ- 451 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~---~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~- 451 (665)
+.+.|+++++..+-++|..+ +.|.. +...++|.||.|+|||-||+++|..+ ...+++++++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 46899999999999999763 22332 45679999999999999999999977 47899999997432
Q ss_pred --------hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 452 --------KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 452 --------~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
.|.|..+ ...+....++...+|++|||||+ +|+.++..+.++++..
T Consensus 634 skligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEk-----------Ah~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEK-----------AHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhh-----------cCHHHHHHHHHHHhcC
Confidence 1333333 35777888888899999999996 7889999999998753
No 217
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.59 E-value=7.5e-07 Score=101.39 Aligned_cols=213 Identities=16% Similarity=0.254 Sum_probs=117.8
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV 450 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~ 450 (665)
....|+++.|.+...+++.+.+.. + ......|||+|++||||+++|+++-... +.+|+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~-------~----A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK-------L----AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH-------H----hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456788888988877777665542 1 1235569999999999999999986543 4689999998753
Q ss_pred hh-----hhccch-------HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCccc
Q psy15936 451 QK-----FIGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEAT 516 (665)
Q Consensus 451 ~~-----~~g~~~-------~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~ 516 (665)
.. +.|... .....+|+. ...+.+|+|||+.+. ...|..+..+++.-. ...+.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCC
Confidence 21 111110 001123333 234689999999763 356666777665421 11111
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCeeEEEEeCCCCHHHH----H
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRIDRKIEFPPPNEEAR----L 585 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd~~I~~~~P~~eer----~ 585 (665)
..+. .-.+||+||+.+ ..+.+.|.. |+. .+.+..|...+| .
T Consensus 334 ~~~~-------------------------~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~ 385 (520)
T PRK10820 334 HEVH-------------------------VDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIM 385 (520)
T ss_pred ccee-------------------------eeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHH
Confidence 1010 111688888653 123444554 553 244444444444 3
Q ss_pred HHHHHhhc----cCCCC-CCCCHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy15936 586 DILRIHSR----KMNLT-RGINLRKIAELMPG---ASGAEVKGVCTEAGMYALRERRVHVTQEDF 642 (665)
Q Consensus 586 ~Il~~~l~----~~~~~-~~vdl~~la~~t~g---~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 642 (665)
.++..++. ..+.. ..+..+.+.....- -+-++|++++.+|...+ ....|+.+|+
T Consensus 386 ~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 386 PLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 44444443 23321 23444444433321 25577777787776543 3345666664
No 218
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.58 E-value=1.1e-06 Score=103.06 Aligned_cols=40 Identities=20% Similarity=0.034 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
.|.|+|+++++-|...|-.+-+..|+.+|+..|++-+...
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~s 807 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSS 807 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHH
Confidence 5789999999999999988899999999999999887643
No 219
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.58 E-value=5.2e-07 Score=95.68 Aligned_cols=64 Identities=31% Similarity=0.525 Sum_probs=43.3
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC--CceEEEechhhh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE--CTFIRVSGSELV 450 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~--~~lirv~~~dl~ 450 (665)
+.+.|+.++.+..--.+.+ =.-|--.++++||.||||||||.||-++|++|| .||..++++++.
T Consensus 24 ~GlVGQ~~AReAagiiv~m--------Ik~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDM--------IKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp TTEES-HHHHHHHHHHHHH--------HHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccChHHHHHHHHHHHHH--------HhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 4677888777665333332 112334578999999999999999999999997 788888887763
No 220
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.57 E-value=9.1e-07 Score=100.58 Aligned_cols=201 Identities=20% Similarity=0.283 Sum_probs=115.7
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh-
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK- 452 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~- 452 (665)
.+.++.|.+...+++.+.+.. . ...+.+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~-a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------V-AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------H-hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 455788899888888887754 1 2456789999999999999999998764 578999999876322
Q ss_pred ----hhccchH-------HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCcc
Q psy15936 453 ----FIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNI 519 (665)
Q Consensus 453 ----~~g~~~~-------~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i 519 (665)
+.|.... .....|.. ...+.+|+|||+.+. ...|..+..+++... ...+...+
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCcce
Confidence 1111000 00112333 335689999999763 356666666665321 11111111
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCeeEEEEeCCCCHHHH----HHHH
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRIDRKIEFPPPNEEAR----LDIL 588 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd~~I~~~~P~~eer----~~Il 588 (665)
. .-.++|++|+.. ..+.+.|.. |+. .+.+..|...+| ..++
T Consensus 320 ~-------------------------~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~ 371 (509)
T PRK05022 320 R-------------------------VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLA 371 (509)
T ss_pred e-------------------------cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHH
Confidence 0 112688888753 123344433 442 344444554444 3455
Q ss_pred HHhhccC----CC-CCCCCHH---HHHHHCCCCCHHHHHHHHHHHHHHHH
Q psy15936 589 RIHSRKM----NL-TRGINLR---KIAELMPGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 589 ~~~l~~~----~~-~~~vdl~---~la~~t~g~s~~dl~~l~~~A~~~A~ 630 (665)
++++... +. ...++-+ .|..+.=--+.++|++++++|+..+.
T Consensus 372 ~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 372 GYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 5554432 21 1223333 33333222367899999999987664
No 221
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=7.2e-07 Score=95.76 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=95.4
Q ss_pred ccccCC-ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------------
Q psy15936 378 YEMVGG-LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---------------- 440 (665)
Q Consensus 378 ~~~i~G-~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---------------- 440 (665)
|+.+.| ++.+++.++..+.. -.-+..+||+||+|+||+++|+++|..+-+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 555655 88888888887743 2345567999999999999999999876321
Q ss_pred --------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHH
Q psy15936 441 --------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 508 (665)
Q Consensus 441 --------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~ 508 (665)
+..+.... . ......++.+...+. .....|++||++|.+.. ..+ +.|+.
T Consensus 72 ~~~~~hpD~~~i~~~~---~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~---NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPDG---Q--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAA---NSLLK 132 (329)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHH---HHHHH
Confidence 11111100 0 011123444444332 22356999999997532 233 34555
Q ss_pred hhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHH
Q psy15936 509 QLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL 588 (665)
Q Consensus 509 ~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il 588 (665)
.++.-+... .+|.+|+.+..+.+.+++ |+ ..++|++|+.++..+.+
T Consensus 133 ~LEEPp~~~-------------------------------~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 133 FLEEPSGGT-------------------------------TAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRL 178 (329)
T ss_pred HhcCCCCCc-------------------------------eEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHH
Confidence 444432221 477788888899999998 77 57999999999887777
Q ss_pred HH
Q psy15936 589 RI 590 (665)
Q Consensus 589 ~~ 590 (665)
+.
T Consensus 179 ~~ 180 (329)
T PRK08058 179 QE 180 (329)
T ss_pred HH
Confidence 63
No 222
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.52 E-value=1.5e-06 Score=101.54 Aligned_cols=215 Identities=17% Similarity=0.243 Sum_probs=120.1
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh-
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ- 451 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~- 451 (665)
..|+++.|.+...+++.+.+... ......|||+|++||||+++|+++.... +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 35778888888887776666431 2345679999999999999999998764 47999999987532
Q ss_pred ----hhhccc----hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCcccc
Q psy15936 452 ----KFIGEG----SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKG 521 (665)
Q Consensus 452 ----~~~g~~----~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~ 521 (665)
.+.|.. .......|.. .....+|+|||+.+. ...|..+..+++.-. ...+...+.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~- 455 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIP- 455 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEE-
Confidence 122211 0000011222 235689999999753 356666666664311 011111010
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-------CCCccccCCCCeeEEEEeCCCCHHHH----HHHHHH
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-------ILDPALLRPGRIDRKIEFPPPNEEAR----LDILRI 590 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-------~Ld~aLlr~gRfd~~I~~~~P~~eer----~~Il~~ 590 (665)
.-.++|+||+..- .+.+.|.- |+. .+.+..|...+| ..+++.
T Consensus 456 ------------------------~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~ 508 (638)
T PRK11388 456 ------------------------VDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNN 508 (638)
T ss_pred ------------------------eeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHH
Confidence 0116888887531 12222222 332 344445555444 445555
Q ss_pred hhccC----CCCCCCCH---HHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 591 HSRKM----NLTRGINL---RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 591 ~l~~~----~~~~~vdl---~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
++... +....++- ..|..+.=.-+.++|+++++.|...+ ....|+.+|+...+
T Consensus 509 ~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 509 KLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 55432 11112333 33333331236688888888876543 34467777776555
No 223
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=3.9e-07 Score=98.63 Aligned_cols=206 Identities=23% Similarity=0.286 Sum_probs=121.3
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHH---h-hCCceEEEechh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH---H-TECTFIRVSGSE 448 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~---~-l~~~lirv~~~d 448 (665)
..+..++++.|.+...+++++.+.. -.+.+.+||++|++||||+.+|+.+.. . .+.+|+.++|..
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 3455667888888888888777754 124567899999999999999999964 2 478999999998
Q ss_pred hhhhhhc-----c-------chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--Cc
Q psy15936 449 LVQKFIG-----E-------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FE 514 (665)
Q Consensus 449 l~~~~~g-----~-------~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~ 514 (665)
+...... . .......+|+. ...+.+|+|||..+.+ ..|..+..+++...- ..
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~---A~GGtLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQ---ANGGTLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred hCcCHHHHHHhccccceeecccCCcCchhee---cCCCEEehhhhhhCCH-----------hHHHHHHHHHHcCceEecC
Confidence 6432111 0 11112233444 2346899999997643 556666666654221 11
Q ss_pred ccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCC--CCCCCc--cccCCCCeeEEEEeCCCCH--HHHHHHH
Q psy15936 515 ATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR--IDILDP--ALLRPGRIDRKIEFPPPNE--EARLDIL 588 (665)
Q Consensus 515 ~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~--~~~Ld~--aLlr~gRfd~~I~~~~P~~--eer~~Il 588 (665)
+.... ..+ +++|+||+. .+.+-. .|.+ -|+...|.+|+... +++..++
T Consensus 207 ~~~~~------------------------~~d-VRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~ 260 (403)
T COG1221 207 GSQPR------------------------PVD-VRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLA 260 (403)
T ss_pred CCCCc------------------------CCC-ceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHH
Confidence 11111 111 257777753 222222 3433 15555666665544 3444455
Q ss_pred HHhh----ccCCCCCCCCH-H---HH-HHHCCCCCHHHHHHHHHHHHHHHH
Q psy15936 589 RIHS----RKMNLTRGINL-R---KI-AELMPGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 589 ~~~l----~~~~~~~~vdl-~---~l-a~~t~g~s~~dl~~l~~~A~~~A~ 630 (665)
++++ +..+.....+. + .+ +....| +-+++++++..++..+.
T Consensus 261 e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 261 EHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 5554 34444433333 1 22 222344 67999999999988875
No 224
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.48 E-value=1.2e-07 Score=93.84 Aligned_cols=45 Identities=36% Similarity=0.609 Sum_probs=34.3
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
|+++.|++..++.+.-+ ..| +.++|++||||||||++|+.++..|
T Consensus 2 f~dI~GQe~aKrAL~iA------------AaG---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIA------------AAG---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHH------------HHC---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHH------------HcC---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 67899999998877332 234 4589999999999999999999865
No 225
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.48 E-value=1.6e-08 Score=107.24 Aligned_cols=154 Identities=5% Similarity=-0.090 Sum_probs=110.2
Q ss_pred hhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCC-----CCCcc
Q psy15936 297 QEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN-----KVDPL 364 (665)
Q Consensus 297 ~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~-----~~~~~ 364 (665)
..+++.+|.++ |||||||+++++ +.+..|+...++++..+|+|++++.+ +.+|..|.. ..||+
T Consensus 141 ~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~I-----R~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 141 ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLI-----RQRYREAADIIKKKGKMSC 215 (413)
T ss_pred hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHH-----HHHHHHHHHHhhccCCCeE
Confidence 34778899987 999999999887 55778999999999999999999998 999988864 46999
Q ss_pred hhhhhhccCCCCCccccCCChHHHHHH--HHHhhcCCCchhHHHhh----CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 365 VSLMMVEKVPDSTYEMVGGLDNQIKEI--KEVIELPVKHPELFDAL----GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 365 i~~~eid~i~~~~~~~i~G~~~~~~~l--~~~l~l~l~~~d~f~~~----g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+|+||||++...+.+. ...+..++ .+++.+ +.++..-+.. .......|++.| +++..+.++
T Consensus 216 LFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl-~D~p~~v~l~G~w~~~~~~~~V~VIa---------TTNrpd~LD 282 (413)
T PLN00020 216 LFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNI-ADNPTNVSLGGDWREKEEIPRVPIIV---------TGNDFSTLY 282 (413)
T ss_pred EEEehhhhcCCCCCCC---CcchHHHHHHHHHHHH-hcCCccccccccccccccCCCceEEE---------eCCCcccCC
Confidence 9999999998766422 22222222 122222 1111100011 123345677777 679999999
Q ss_pred CceEEEechhhhhhhhccchHHHHHHHHHHHh
Q psy15936 439 CTFIRVSGSELVQKFIGEGSRMVRELFVMARE 470 (665)
Q Consensus 439 ~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~ 470 (665)
++++|.++.|.. +..++...+..|++...+
T Consensus 283 pALlRpGRfDk~--i~lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 283 APLIRDGRMEKF--YWAPTREDRIGVVHGIFR 312 (413)
T ss_pred HhHcCCCCCCce--eCCCCHHHHHHHHHHHhc
Confidence 999999999874 346777788888886544
No 226
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.48 E-value=2e-06 Score=94.69 Aligned_cols=210 Identities=22% Similarity=0.332 Sum_probs=125.2
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh-
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK- 452 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~- 452 (665)
.+..+.|.....+++++.+.. . ......||++|++||||-.+|+++-... +.||+.++|..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~k----------v-A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK----------V-APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 455788999999999887754 1 2455689999999999999999997755 579999999875322
Q ss_pred ----hhccchH-------HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh--hcCCcccCcc
Q psy15936 453 ----FIGEGSR-------MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ--LDGFEATKNI 519 (665)
Q Consensus 453 ----~~g~~~~-------~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~--~d~~~~~~~i 519 (665)
+.|.... .....|+. .....+|+|||..+. .+.|..+..++.. +....+...+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~---A~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQ---ANGGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeE---cCCceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCCccc
Confidence 2221111 01123333 234689999998653 3566666666653 2233333323
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC--C-----CCCccccCCCCeeEEEEeCCCCHHHHH----HHH
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI--D-----ILDPALLRPGRIDRKIEFPPPNEEARL----DIL 588 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~--~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~----~Il 588 (665)
+.-+ +||+|||.. + .+-+.|.- |+. ++.+..|...+|. -++
T Consensus 274 ~vdv-------------------------RiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~ 325 (464)
T COG2204 274 KVDV-------------------------RIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLA 325 (464)
T ss_pred ceee-------------------------EEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHH
Confidence 2222 799999863 1 12222322 342 6777777776665 344
Q ss_pred HHhhcc----CCC-CCCCCHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy15936 589 RIHSRK----MNL-TRGINLRKIAELMPGA---SGAEVKGVCTEAGMYALRERRVHVTQEDF 642 (665)
Q Consensus 589 ~~~l~~----~~~-~~~vdl~~la~~t~g~---s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 642 (665)
.+++.. .+. ...++-+.++.....- +.++|++++++++..+ ....|+.+|+
T Consensus 326 ~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 326 EHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 455443 322 2445555555554322 4577777777776554 3344555553
No 227
>PRK08116 hypothetical protein; Validated
Probab=98.47 E-value=1.3e-06 Score=91.09 Aligned_cols=70 Identities=26% Similarity=0.444 Sum_probs=48.2
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhc----cchHHHHHHHHHHHhcCCeEEEEcCccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIG----EGSRMVRELFVMAREHAPSIIFMDEIDS 483 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g----~~~~~~~~if~~a~~~~p~VlliDEID~ 483 (665)
.+.+++|+|++|||||+||.++++.+ +.+++.++..++...+.. ........++... ...++|+|||+..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~ 189 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGA 189 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccC
Confidence 34579999999999999999999976 677888888776554321 1111122333332 3446999999863
No 228
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.7e-06 Score=99.31 Aligned_cols=228 Identities=21% Similarity=0.187 Sum_probs=131.4
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhC--CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh-------
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALG--IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV------- 450 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g--~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~------- 450 (665)
.+-|.+.+++.+ ++.+. .-.......| +...-++||.|.||+|||.|.+.+++.+...++.-+...-.
T Consensus 287 sIyG~e~VKkAi--lLqLf-gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 287 SIYGHEDVKKAI--LLQLF-GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred cccCcHHHHHHH--HHHhc-CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 467888888877 44431 1111000001 11124799999999999999999999887666554322110
Q ss_pred ------hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh-hcCCcccCcccccc
Q psy15936 451 ------QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ-LDGFEATKNIKGVC 523 (665)
Q Consensus 451 ------~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~-~d~~~~~~~i~~vc 523 (665)
..|..+... + --..++|.+|||+|++. ...+..+.+.+.+ .=. .
T Consensus 364 ~rd~~tge~~LeaGA-----L---VlAD~Gv~cIDEfdKm~-----------~~dr~aihEaMEQQtIs----------I 414 (682)
T COG1241 364 VRDKVTGEWVLEAGA-----L---VLADGGVCCIDEFDKMN-----------EEDRVAIHEAMEQQTIS----------I 414 (682)
T ss_pred EEccCCCeEEEeCCE-----E---EEecCCEEEEEeccCCC-----------hHHHHHHHHHHHhcEee----------e
Confidence 011111100 0 01246799999999752 2334445554443 111 1
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeEEEEeC-CCCHHHHHHHHH
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDRKIEFP-PPNEEARLDILR 589 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~~I~~~-~P~~eer~~Il~ 589 (665)
..||..++-.-| .-|+||+|+.. .++++|++ |||..+.+. .|+.+.-..|..
T Consensus 415 aKAGI~atLnAR------------csvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 415 AKAGITATLNAR------------CSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred cccceeeecchh------------hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHH
Confidence 223322222111 14899998765 36789999 999866664 666654444444
Q ss_pred HhhccCC----------------------------------CCCCCC---HHHHHH-----HC----------CCCCHHH
Q psy15936 590 IHSRKMN----------------------------------LTRGIN---LRKIAE-----LM----------PGASGAE 617 (665)
Q Consensus 590 ~~l~~~~----------------------------------~~~~vd---l~~la~-----~t----------~g~s~~d 617 (665)
+.+..+. ..+.+. .+.|.. +. ...|.++
T Consensus 481 hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~Rq 560 (682)
T COG1241 481 HILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQ 560 (682)
T ss_pred HHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHH
Confidence 3332221 000000 111111 11 2257899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 618 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 618 l~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
|+.+++-|...|-.+.+..++.+|...|++-+....
T Consensus 561 LEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l 596 (682)
T COG1241 561 LESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSL 596 (682)
T ss_pred HHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887543
No 229
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7e-07 Score=92.06 Aligned_cols=96 Identities=29% Similarity=0.517 Sum_probs=69.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhccchHHH-HHHHHHHH----hcCCeEEEEcCccccccC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGEGSRMV-RELFVMAR----EHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g~~~~~~-~~if~~a~----~~~p~VlliDEID~l~~~ 487 (665)
.++||.||+|||||.||+.+|..++.||..-++..+.. .|+|++-..+ ..+++.+. +....|++|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 57999999999999999999999999999888877753 4777766543 23333221 223579999999999876
Q ss_pred CcCCC---CCCChHHHHHHHHHHHh
Q psy15936 488 RIESG---SGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 488 ~~~~~---~~~~~~~~~~l~~Ll~~ 509 (665)
..++. +-+...+|+.+..++..
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 64331 12234667777777754
No 230
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.42 E-value=3.1e-06 Score=81.99 Aligned_cols=103 Identities=28% Similarity=0.459 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh-----h
Q psy15936 382 GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK-----F 453 (665)
Q Consensus 382 ~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~-----~ 453 (665)
.|.+...+++.+.+.. .. ..+.+|||+|++||||+.+|+++-+.. +.+|+.++|..+... +
T Consensus 2 iG~s~~m~~~~~~~~~----------~a-~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKR----------AA-SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHH----------HT-TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHH----------Hh-CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4666666776665543 12 345789999999999999999998855 478999999876332 1
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 454 IGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 454 ~g~~~-------~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
.|... .....+|.. .....+|+|||+.+. ...|..+..+++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~-----------~~~Q~~Ll~~l~~ 119 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLP-----------PELQAKLLRVLEE 119 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS------------HHHHHHHHHHHHH
T ss_pred hccccccccccccccCCceee---ccceEEeecchhhhH-----------HHHHHHHHHHHhh
Confidence 22110 001234444 344699999999864 4678888888864
No 231
>KOG2680|consensus
Probab=98.42 E-value=6.9e-06 Score=84.07 Aligned_cols=103 Identities=24% Similarity=0.249 Sum_probs=81.8
Q ss_pred EEEEEeCC------------CCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCH
Q psy15936 549 KVIMATNR------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASG 615 (665)
Q Consensus 549 ~VIatTn~------------~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~ 615 (665)
.++++||+ |..+|-.|+. |. ..|.-.+++.++..+||++.+....+.-+ ..++.|......-+-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 57778874 6678888888 76 47888899999999999999876554422 225666666666677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc
Q psy15936 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 654 (665)
+..-+|+..|.+.|.++....+..+|+..+++-.+...+
T Consensus 396 RYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhh
Confidence 888899999999999999999999999999998876543
No 232
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.40 E-value=1.6e-06 Score=94.58 Aligned_cols=200 Identities=22% Similarity=0.314 Sum_probs=120.2
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh-
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK- 452 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~- 452 (665)
.+..++|.+....++.+.++. =......|||+|.+||||...|+++-... +.+|+.++|..+-..
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred ccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 344688888888888887765 12456789999999999999999997754 689999999876332
Q ss_pred ----hhccchHH-------HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh--hcCCcccCcc
Q psy15936 453 ----FIGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ--LDGFEATKNI 519 (665)
Q Consensus 453 ----~~g~~~~~-------~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~--~d~~~~~~~i 519 (665)
..|....+ +..-|+. ...+-+|+|||..+. ...|..+...++. ++...+...+
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFEl---AdGGTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFEL---ADGGTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHhcccccccccchhccCcceee---cCCCeEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCcee
Confidence 22221111 1122222 124579999998653 3556666666653 3334333333
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCee-------EEEEeCCCCHHHHH----HHH
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRID-------RKIEFPPPNEEARL----DIL 588 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd-------~~I~~~~P~~eer~----~Il 588 (665)
++= ++||+|||+- |-.+.. .|+|- .++.+..|...+|. -+.
T Consensus 356 kVD-------------------------VRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA 407 (550)
T COG3604 356 KVD-------------------------VRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLA 407 (550)
T ss_pred EEE-------------------------EEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHH
Confidence 222 2799999972 222222 12221 15666667666663 233
Q ss_pred HHhhcc----CCC-CCCCC---HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q psy15936 589 RIHSRK----MNL-TRGIN---LRKIAELMPGASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 589 ~~~l~~----~~~-~~~vd---l~~la~~t~g~s~~dl~~l~~~A~~~A 629 (665)
++++++ .+. ...++ ++.+..+.---+.+++++++.+|+..|
T Consensus 408 ~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 408 GYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 444433 333 12222 334444332236799999999999887
No 233
>KOG0478|consensus
Probab=98.39 E-value=2.3e-06 Score=95.90 Aligned_cols=236 Identities=18% Similarity=0.216 Sum_probs=131.7
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhC-CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh---hhc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK---FIG 455 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g-~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~---~~g 455 (665)
.+.|.+.+|+-+ ++.++=....-|...| +...-++||+|.||||||.+.+.+.+.+....+.-+...-... |+.
T Consensus 430 sIye~edvKkgl--LLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGL--LLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhH--HHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 356777777776 4444222222233322 2223479999999999999999999988766665443221111 111
Q ss_pred cchHHHHHHHHHHH--hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 456 EGSRMVRELFVMAR--EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 456 ~~~~~~~~if~~a~--~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
-+.....-+++... .....+-+|||+|++.. ..+..|.+.+++-. . -+..||.++.-.
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d-----------StrSvLhEvMEQQT-v--------SIAKAGII~sLN 567 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD-----------STRSVLHEVMEQQT-L--------SIAKAGIIASLN 567 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH-----------HHHHHHHHHHHHhh-h--------hHhhcceeeecc
Confidence 11111111111100 12345889999998732 33556667665421 1 112233333322
Q ss_pred hhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeEE-EEeCCCCHHHHHHHHH----HhhccC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDRK-IEFPPPNEEARLDILR----IHSRKM 595 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~~-I~~~~P~~eer~~Il~----~~l~~~ 595 (665)
-|- -|+|++|+.. .|+|.|++ |||.+ +-+..||...-+.|.. .|+..-
T Consensus 568 AR~------------SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e~~ 633 (804)
T KOG0478|consen 568 ARC------------SVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPETG 633 (804)
T ss_pred ccc------------eeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhccccc
Confidence 222 4899998542 36899999 99984 4456777763333333 233211
Q ss_pred C----------------------CCCCC---CHHH-HHH----H----CCC---CCHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15936 596 N----------------------LTRGI---NLRK-IAE----L----MPG---ASGAEVKGVCTEAGMYALRERRVHVT 638 (665)
Q Consensus 596 ~----------------------~~~~v---dl~~-la~----~----t~g---~s~~dl~~l~~~A~~~A~~~~~~~It 638 (665)
. +.+.+ .... ++. + ..| .+++++..|++.+...|..+....+.
T Consensus 634 ~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve 713 (804)
T KOG0478|consen 634 EKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVE 713 (804)
T ss_pred ccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccc
Confidence 0 00000 0111 111 0 112 35789999999998888888888999
Q ss_pred HHHHHHHHHHHhh
Q psy15936 639 QEDFEMAVAKVMQ 651 (665)
Q Consensus 639 ~~d~~~Al~~~~~ 651 (665)
..|+++|+.-...
T Consensus 714 ~~dV~eA~~l~R~ 726 (804)
T KOG0478|consen 714 EIDVEEAVRLLRE 726 (804)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999876554
No 234
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.39 E-value=6.4e-06 Score=88.68 Aligned_cols=220 Identities=24% Similarity=0.280 Sum_probs=124.5
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec----------
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG---------- 446 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~---------- 446 (665)
.|..+.|++..+..+--.-. .+.-.++|+.|+.|+|||+++|+++..|...-...+|
T Consensus 15 pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred chhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 34567888877766511111 1234689999999999999999999988644333333
Q ss_pred ---hhhhhh---------------h----hccchH-HH-----HHHHH----------HHHhcCCeEEEEcCccccccCC
Q psy15936 447 ---SELVQK---------------F----IGEGSR-MV-----RELFV----------MAREHAPSIIFMDEIDSIGSSR 488 (665)
Q Consensus 447 ---~dl~~~---------------~----~g~~~~-~~-----~~if~----------~a~~~~p~VlliDEID~l~~~~ 488 (665)
.....+ + .+..+. .+ ..+.. .++ ....|+++||++.|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL---- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEeccccc----
Confidence 111111 0 011111 10 11111 111 12359999999965
Q ss_pred cCCCCCCChHHHHHHHHHHHhh------cCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-CCC
Q psy15936 489 IESGSGGDSEVQRTMLELLNQL------DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-ILD 561 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~~------d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-~Ld 561 (665)
+...+..|...+..- +|++... ++-..+|+|+|+.+ .|-
T Consensus 157 -------~d~lvd~LLd~aaeG~n~vereGisi~h---------------------------pa~fvligTmNPEeGeLr 202 (423)
T COG1239 157 -------DDHLVDALLDVAAEGVNDVEREGISIRH---------------------------PARFLLIGTMNPEEGELR 202 (423)
T ss_pred -------cHHHHHHHHHHHHhCCceeeeCceeecc---------------------------CccEEEEeecCccccccc
Confidence 335566666666542 2222111 11125778888764 588
Q ss_pred ccccCCCCeeEEEEeCCC-CHHHHHHHHHHhhccCCCCCCCC-------------------------------HHHHHHH
Q psy15936 562 PALLRPGRIDRKIEFPPP-NEEARLDILRIHSRKMNLTRGIN-------------------------------LRKIAEL 609 (665)
Q Consensus 562 ~aLlr~gRfd~~I~~~~P-~~eer~~Il~~~l~~~~~~~~vd-------------------------------l~~la~~ 609 (665)
+.|+. ||+..|....| +.++|.+|++..+.. ...++.- ...++..
T Consensus 203 pqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~ 279 (423)
T COG1239 203 PQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAEL 279 (423)
T ss_pred hhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHH
Confidence 99999 99999999755 568899988865542 1111111 1112221
Q ss_pred CC--CCC-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 610 MP--GAS-GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 610 t~--g~s-~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
+. +.. .+.-..+.+.|...|...++..++.+|+..|......
T Consensus 280 ~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 280 CARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred HHHhccCCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhh
Confidence 11 011 1222244555666667778888999999999887655
No 235
>KOG2227|consensus
Probab=98.38 E-value=9.2e-06 Score=87.94 Aligned_cols=223 Identities=21% Similarity=0.271 Sum_probs=142.0
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-----CceEEEechhhh---
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRVSGSELV--- 450 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-----~~lirv~~~dl~--- 450 (665)
+.+.|-+.+.+.+++++..+ +..+.+.++.+.|.||+|||.+...+...+. ...++++|..+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35778899999999988763 3346778899999999999999998876553 344677776431
Q ss_pred -------hhh----hcc-chHHHHHHHHHHHh-c-CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCccc
Q psy15936 451 -------QKF----IGE-GSRMVRELFVMARE-H-APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 451 -------~~~----~g~-~~~~~~~if~~a~~-~-~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~ 516 (665)
..+ .++ ........|..... . .+-++++||+|.|.... +.++..+.... .+...
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFewp-~lp~s 288 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEWP-KLPNS 288 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhcc-cCCcc
Confidence 111 111 22223344443322 2 25688999999886433 22233333322 22111
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCcccc----CCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALL----RPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLl----r~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
. + .+|+.+|..+.-|..|- +.+--...+.|++++.++..+|++..+
T Consensus 289 r-~-----------------------------iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 289 R-I-----------------------------ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred e-e-----------------------------eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1 1 46777787664443221 122334589999999999999999998
Q ss_pred ccCCCCCCCC--HHHHHHHCCCCCH--HHHHHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHhhh
Q psy15936 593 RKMNLTRGIN--LRKIAELMPGASG--AEVKGVCTEAGMYALRERR----------------VHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 593 ~~~~~~~~vd--l~~la~~t~g~s~--~dl~~l~~~A~~~A~~~~~----------------~~It~~d~~~Al~~~~~~ 652 (665)
.........+ ++..|+...|.|| |.+-.+|+.|...|..+.+ ..|-.+++..++.++-..
T Consensus 339 ~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 339 SEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred hcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 8776554333 6778888888776 4455678888887766532 235578888888877543
No 236
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.37 E-value=1.5e-06 Score=83.73 Aligned_cols=134 Identities=28% Similarity=0.407 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----------------------
Q psy15936 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------------------- 439 (665)
Q Consensus 383 G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~----------------------- 439 (665)
|+++.++.+...+.. -.-+-.+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 667777878776654 244567899999999999999999986621
Q ss_pred ceEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc
Q psy15936 440 TFIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 515 (665)
Q Consensus 440 ~lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~ 515 (665)
.+..++...... .-....++.+...+. .....|++||++|.+.. +.++.|...++ ..+.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LE---epp~ 131 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLE---EPPE 131 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHH---STTT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhc---CCCC
Confidence 222222221100 012233444444432 22467999999997633 44444544444 3322
Q ss_pred cCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCC
Q psy15936 516 TKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPP 579 (665)
Q Consensus 516 ~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P 579 (665)
. . .+|.+|+.++.+.+.+++ |+ ..+.|+++
T Consensus 132 ~--~-----------------------------~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 132 N--T-----------------------------YFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp T--E-----------------------------EEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred C--E-----------------------------EEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 1 1 689999999999999999 77 46777654
No 237
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=8.4e-06 Score=86.92 Aligned_cols=132 Identities=18% Similarity=0.280 Sum_probs=83.1
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEE--Eec--------------hhhhhhhh--c--cchHHHHHHHHHHH--
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR--VSG--------------SELVQKFI--G--EGSRMVRELFVMAR-- 469 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lir--v~~--------------~dl~~~~~--g--~~~~~~~~if~~a~-- 469 (665)
-+-.+||+||+|+||+++|+++|..+-+.--. -.| +|+..-.+ + -....++++...+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 45578999999999999999999876331100 000 11110000 0 12334455444332
Q ss_pred --hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccc
Q psy15936 470 --EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547 (665)
Q Consensus 470 --~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~ 547 (665)
.....|++||++|++.. ..++. |+..++.-... .
T Consensus 103 ~~~g~~KV~iI~~a~~m~~-----------~AaNa---LLKtLEEPp~~--~---------------------------- 138 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTE-----------AAANA---LLKTLEEPRPN--T---------------------------- 138 (325)
T ss_pred cccCCceEEEEechhhhCH-----------HHHHH---HHHHhcCCCCC--e----------------------------
Confidence 23457999999997633 33344 44444432221 1
Q ss_pred cEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHh
Q psy15936 548 AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH 591 (665)
Q Consensus 548 ~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~ 591 (665)
.+|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 139 -~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 139 -YFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -EEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 588899999999999999 87 57999999999888777754
No 238
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.36 E-value=7.1e-06 Score=96.73 Aligned_cols=109 Identities=23% Similarity=0.405 Sum_probs=73.7
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK 452 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~ 452 (665)
..|+++.|.+...+.+.+.+... .....+|||+|++|||||++|+++.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46778889998888887777541 1345689999999999999999998754 579999999865321
Q ss_pred -----hhccc-------hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 453 -----FIGEG-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 453 -----~~g~~-------~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
..|.. .......|.. ...+.+|||||+.+. ...|..+..+++.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~ 496 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMP-----------LELQPKLLRVLQE 496 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCC-----------HHHHHHHHHHHHh
Confidence 11110 0111122333 335789999999753 3566667666654
No 239
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.32 E-value=1.1e-05 Score=91.11 Aligned_cols=68 Identities=25% Similarity=0.376 Sum_probs=53.6
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.|+|...+.+.+++.-...-+++++.+++. .+ .+..+..-+||+||||||||++++.+|++++..+..
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~------~~--~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEE------MF--SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHH------Hh--ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 367788888888888888888888888864 11 133445678889999999999999999999877665
No 240
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.32 E-value=7.5e-06 Score=93.79 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=118.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhhhhhhhccc--hHHH--------HHHHHHHHhcCCeEEEEcCc
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELVQKFIGEG--SRMV--------RELFVMAREHAPSIIFMDEI 481 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl~~~~~g~~--~~~~--------~~if~~a~~~~p~VlliDEI 481 (665)
.||+|.|++|+||++++++++..+.. +|..+...--.....|.. +..+ .-++. . ....|+|+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla--~-Ah~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLA--E-ADGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCcee--e-ccCCEEEecCc
Confidence 58999999999999999999999865 776643322222222221 0000 01111 1 12369999999
Q ss_pred cccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---C
Q psy15936 482 DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---D 558 (665)
Q Consensus 482 D~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---~ 558 (665)
+.+. +.++..|.+-+..- ...+. |.+..+.....| .+|++-|.. .
T Consensus 103 n~~~-----------~~~~~aLleame~G--------~vtIe--------R~G~s~~~Pa~F-----~LIat~~~~~~~~ 150 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTG--------EVRLE--------RDGLALRLPARF-----GLVALDEGAEEDE 150 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCC--------cEEEE--------ECCcEEecCCCc-----EEEecCCChhccc
Confidence 9753 34444444443321 00010 111111111111 455553322 3
Q ss_pred CCCccccCCCCeeEEEEeCCCCHHHHH-------HHHH--HhhccCCCCCCCCHHHHHHHC--CCC-CHHHHHHHHHHHH
Q psy15936 559 ILDPALLRPGRIDRKIEFPPPNEEARL-------DILR--IHSRKMNLTRGINLRKIAELM--PGA-SGAEVKGVCTEAG 626 (665)
Q Consensus 559 ~Ld~aLlr~gRfd~~I~~~~P~~eer~-------~Il~--~~l~~~~~~~~vdl~~la~~t--~g~-s~~dl~~l~~~A~ 626 (665)
.++++++. ||+..+.++.|+..+.. +|.. ..+.+..++.. .+..++..+ .|. |.+-...+++.|.
T Consensus 151 ~L~~~lLD--Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraAR 227 (584)
T PRK13406 151 RAPAALAD--RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAAR 227 (584)
T ss_pred CCCHHhHh--heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 48899999 99999999988865432 2332 22233333222 133333322 354 7788889999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 627 MYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 627 ~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
..|..+++..|+.+|+..|+.-++..
T Consensus 228 a~AaL~Gr~~V~~~dv~~Aa~lvL~h 253 (584)
T PRK13406 228 AAAALAGRTAVEEEDLALAARLVLAP 253 (584)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 241
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.31 E-value=1.9e-06 Score=92.57 Aligned_cols=197 Identities=22% Similarity=0.226 Sum_probs=107.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh-------------hhhhhhccchHHHHHHHHHHHhcCCeEEEEc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE-------------LVQKFIGEGSRMVRELFVMAREHAPSIIFMD 479 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d-------------l~~~~~g~~~~~~~~if~~a~~~~p~VlliD 479 (665)
.-++||.|.||+|||.|.+.++......++..+... ....|..... .+-. ...+|.+||
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaG-----alvl---ad~GiccID 128 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAG-----ALVL---ADGGICCID 128 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE------HHHH---CTTSEEEEC
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCC-----chhc---ccCceeeec
Confidence 347999999999999999988766554443322211 1111111111 1112 345799999
Q ss_pred CccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-
Q psy15936 480 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID- 558 (665)
Q Consensus 480 EID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~- 558 (665)
|+|++.. +....+.+.+++ . ......||+.+.- ++-..|+|++|+..
T Consensus 129 e~dk~~~-----------~~~~~l~eaMEq---q------~isi~kagi~~~l------------~ar~svlaa~NP~~g 176 (331)
T PF00493_consen 129 EFDKMKE-----------DDRDALHEAMEQ---Q------TISIAKAGIVTTL------------NARCSVLAAANPKFG 176 (331)
T ss_dssp TTTT--C-----------HHHHHHHHHHHC---S------CEEECTSSSEEEE------------E---EEEEEE--TT-
T ss_pred ccccccc-----------hHHHHHHHHHHc---C------eeccchhhhcccc------------cchhhhHHHHhhhhh
Confidence 9997633 334445555543 1 1111233322111 11225899998765
Q ss_pred ------------CCCccccCCCCeeEEEEe-CCCCHHHHHHHHHHhhccCCCCC------------CCC-----------
Q psy15936 559 ------------ILDPALLRPGRIDRKIEF-PPPNEEARLDILRIHSRKMNLTR------------GIN----------- 602 (665)
Q Consensus 559 ------------~Ld~aLlr~gRfd~~I~~-~~P~~eer~~Il~~~l~~~~~~~------------~vd----------- 602 (665)
.+++.|++ |||..+.+ ..|+.+.-..+.++.+....... .++
T Consensus 177 ~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ya 254 (331)
T PF00493_consen 177 RYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYA 254 (331)
T ss_dssp -S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHH
T ss_pred hcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHH
Confidence 47889999 99987665 57776666666665544321110 111
Q ss_pred ------------HHHHHHH-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 603 ------------LRKIAEL-------------MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 603 ------------l~~la~~-------------t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
.+.|... ....|.+.++.+++-|...|..+.+..|+.+|+..|+.-+..
T Consensus 255 r~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 255 RQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred HhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 1111110 112466788999999999998888999999999999987643
No 242
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.31 E-value=2.5e-05 Score=90.29 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=64.6
Q ss_pred EEEEEeCCC--CCCCccccCCCCee---EEEEeCC---CCHHHHHHHHHHhhccCC---CCCCCCHHHHHHH------CC
Q psy15936 549 KVIMATNRI--DILDPALLRPGRID---RKIEFPP---PNEEARLDILRIHSRKMN---LTRGINLRKIAEL------MP 611 (665)
Q Consensus 549 ~VIatTn~~--~~Ld~aLlr~gRfd---~~I~~~~---P~~eer~~Il~~~l~~~~---~~~~vdl~~la~~------t~ 611 (665)
++|+++|+. ..++++|+. ||. ..+.|.. -+.+.+..+++.+.+... ....++-+.++.. ..
T Consensus 279 rvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~a 356 (637)
T PRK13765 279 IMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRA 356 (637)
T ss_pred EEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHh
Confidence 688888764 567899987 775 5566652 234666666665443332 1223443322221 11
Q ss_pred C------CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15936 612 G------ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 648 (665)
Q Consensus 612 g------~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 648 (665)
| +..++|..++++|...|..++...++.+|+..|+..
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2 346899999999999999999999999999988754
No 243
>KOG0745|consensus
Probab=98.31 E-value=1.4e-06 Score=93.08 Aligned_cols=97 Identities=32% Similarity=0.520 Sum_probs=68.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhccchHH-HHHHHHHHH----hcCCeEEEEcCcccccc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGEGSRM-VRELFVMAR----EHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g~~~~~-~~~if~~a~----~~~p~VlliDEID~l~~ 486 (665)
..+|||.||+|+|||.||+.+|+.++.||...+|..+.. .|+|++... +..++..|. +....|+|+||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999999988743 577776554 344444332 23457999999999984
Q ss_pred CCcCCC---CCCChHHHHHHHHHHHh
Q psy15936 487 SRIESG---SGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 487 ~~~~~~---~~~~~~~~~~l~~Ll~~ 509 (665)
+...-. +-+-..+|+.|..|++.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 332111 11234567777666653
No 244
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.30 E-value=1.4e-05 Score=85.54 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=46.1
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCC-CCceEEEeCCCCChHHHHHHHHHHhhCC-------ceEEEec
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSG 446 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~-~~~~vLL~GppGtGKT~LA~aia~~l~~-------~lirv~~ 446 (665)
++.|+++.+.++.+.+..+ ..|.. ..+.++|+||||+|||++|+++++.++. +++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~--------a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSA--------AQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHH--------HhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 6889999999887776542 12323 4567899999999999999999999875 7777655
No 245
>PRK08181 transposase; Validated
Probab=98.28 E-value=2.9e-06 Score=88.21 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=58.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccc-hHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~-~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
...+++|+||||||||+||.+++..+ +..++.+...++...+.... .......+... ..+++++|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC-
Confidence 45689999999999999999999754 66777788777766542211 11122333332 3467999999986432
Q ss_pred CcCCCCCCChHHHHHHHHHHHhh
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+...+..+.++++..
T Consensus 182 --------~~~~~~~Lf~lin~R 196 (269)
T PRK08181 182 --------DQAETSVLFELISAR 196 (269)
T ss_pred --------CHHHHHHHHHHHHHH
Confidence 234456677777654
No 246
>PRK12377 putative replication protein; Provisional
Probab=98.27 E-value=1.2e-05 Score=82.52 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=56.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccc--hHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEG--SRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~--~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
..+++|+||||||||+||.++++.+ +..++.+...++...+.... ......++... ...++|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 4689999999999999999999987 56677777777665432110 00112233332 456799999997532
Q ss_pred CcCCCCCCChHHHHHHHHHHHh
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
.+...+..+.++++.
T Consensus 177 -------~s~~~~~~l~~ii~~ 191 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDR 191 (248)
T ss_pred -------CCHHHHHHHHHHHHH
Confidence 222445566666654
No 247
>PF13173 AAA_14: AAA domain
Probab=98.26 E-value=1e-05 Score=74.57 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=46.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC--CceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE--CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~--~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
.+.++|+||+|||||++++.++..+. ..++++++.+......... . ....+.......+.+++||||+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998876 7788888776543211110 0 122222211125679999999964
No 248
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.26 E-value=6.8e-06 Score=87.90 Aligned_cols=87 Identities=20% Similarity=0.381 Sum_probs=56.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhcc---chHHHHHHHHHHHhcCCeEEEEcCccccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE---GSRMVRELFVMAREHAPSIIFMDEIDSIG 485 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~---~~~~~~~if~~a~~~~p~VlliDEID~l~ 485 (665)
...+++|+||+|+|||+||.++|+.+ +..++.++..++...+... ........+... ...++|+|||+....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK 259 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC
Confidence 34789999999999999999999976 6778888888776544211 001111112222 345799999997532
Q ss_pred cCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 486 SSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
.++.....+..+++.
T Consensus 260 ---------~t~~~~~~Lf~iin~ 274 (329)
T PRK06835 260 ---------ITEFSKSELFNLINK 274 (329)
T ss_pred ---------CCHHHHHHHHHHHHH
Confidence 233445556666654
No 249
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.1e-06 Score=93.58 Aligned_cols=47 Identities=32% Similarity=0.526 Sum_probs=37.8
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..|.|+.|++..++.+.-+. .-+.++|++||||||||++|+-+...|
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 36779999999988773322 245689999999999999999998765
No 250
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=4.5e-06 Score=89.59 Aligned_cols=133 Identities=21% Similarity=0.274 Sum_probs=85.4
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE---ec--------------hhhhhhhh-------------------
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV---SG--------------SELVQKFI------------------- 454 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv---~~--------------~dl~~~~~------------------- 454 (665)
.-+..+||+||+|+||+++|+.+|..+.+.--.. .| +|+..-.+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5567899999999999999999998774421000 00 01100000
Q ss_pred ------------ccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 455 ------------GEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 455 ------------g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
.-....++.+...+. .....|++||++|++.. .. .+.||..++.-....
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~A---aNaLLKtLEEPp~~t- 163 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AA---ANALLKTLEEPPPGT- 163 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HH---HHHHHHHhcCCCcCc-
Confidence 011233444444332 22346999999998643 23 444555554422221
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHh
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH 591 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~ 591 (665)
.+|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 164 ------------------------------~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 ------------------------------VFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ------------------------------EEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 589999999999999999 88 68999999999998888653
No 251
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.6e-05 Score=84.63 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=90.4
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE--ec-----------hhhhhh--hh---c------cchHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV--SG-----------SELVQK--FI---G------EGSRMVRELFV 466 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv--~~-----------~dl~~~--~~---g------~~~~~~~~if~ 466 (665)
.-+-.+||+||+|+||+++|.++|..+-+.-... .| +|+..- .+ + -....++++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 3445799999999999999999998763210000 00 111100 01 0 01233444444
Q ss_pred HHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhh
Q psy15936 467 MARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542 (665)
Q Consensus 467 ~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~d 542 (665)
.+.. ....|++||++|.+.. .. .+.|++.++.-....
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~-----------~A---aNaLLKtLEEPp~~~------------------------- 144 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR-----------AA---CNALLKTLEEPSPGR------------------------- 144 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH-----------HH---HHHHHHHhhCCCCCC-------------------------
Confidence 3322 2346999999998633 23 344444444432221
Q ss_pred hhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCC
Q psy15936 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGAS 614 (665)
Q Consensus 543 f~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s 614 (665)
.+|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+... +.+ ..+...++..+.|..
T Consensus 145 ------~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p 202 (319)
T PRK08769 145 ------YLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHP 202 (319)
T ss_pred ------eEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCH
Confidence 588889999999999999 88 57999999998887777642 222 112345566666643
No 252
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.22 E-value=5.2e-06 Score=83.43 Aligned_cols=184 Identities=21% Similarity=0.346 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC---ceEEEec-h--------hh-
Q psy15936 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSG-S--------EL- 449 (665)
Q Consensus 383 G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~---~lirv~~-~--------dl- 449 (665)
|-+++.+.+.+.+.. .+...++|+||+|+|||+|++.+...+.. ..+.+.. . .+
T Consensus 3 gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 3 GREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 556677777665532 24678999999999999999999998732 1111111 0 00
Q ss_pred -------------hhhhh------------ccchHHHHHHHHHHHhc-CCeEEEEcCccccc-cCCcCCCCCCChHHHHH
Q psy15936 450 -------------VQKFI------------GEGSRMVRELFVMAREH-APSIIFMDEIDSIG-SSRIESGSGGDSEVQRT 502 (665)
Q Consensus 450 -------------~~~~~------------g~~~~~~~~if~~a~~~-~p~VlliDEID~l~-~~~~~~~~~~~~~~~~~ 502 (665)
....+ ......+..++...... ...++++||++.+. ... ........
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHH
Confidence 00000 11233455555554443 34799999999886 211 22333344
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-----CCCCccccCCCCeeEEEEeC
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-----DILDPALLRPGRIDRKIEFP 577 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-----~~Ld~aLlr~gRfd~~I~~~ 577 (665)
+..++..... ...+ | .|++++... ..-...+.. |+.. +.++
T Consensus 144 l~~~~~~~~~---~~~~---~-------------------------~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~ 189 (234)
T PF01637_consen 144 LRSLLDSLLS---QQNV---S-------------------------IVITGSSDSLMEEFLDDKSPLFG--RFSH-IELK 189 (234)
T ss_dssp HHHHHHH-------TTE---E-------------------------EEEEESSHHHHHHTT-TTSTTTT-----E-EEE-
T ss_pred HHHHHhhccc---cCCc---e-------------------------EEEECCchHHHHHhhcccCcccc--ccce-EEEe
Confidence 4444433111 1111 1 344444311 112233444 7876 9999
Q ss_pred CCCHHHHHHHHHHhhccC-CC-CCCCCHHHHHHHCCCCCHHHHHH
Q psy15936 578 PPNEEARLDILRIHSRKM-NL-TRGINLRKIAELMPGASGAEVKG 620 (665)
Q Consensus 578 ~P~~eer~~Il~~~l~~~-~~-~~~vdl~~la~~t~g~s~~dl~~ 620 (665)
+.+.++..+++...+... .+ .++.+++.+...+.| .|+.|..
T Consensus 190 ~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 190 PLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp ---HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHHH
T ss_pred eCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC-CHHHHhc
Confidence 999999999999987665 11 144557778888877 4666543
No 253
>KOG0480|consensus
Probab=98.22 E-value=1.3e-05 Score=89.47 Aligned_cols=240 Identities=19% Similarity=0.173 Sum_probs=139.1
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHH--HhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh-
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELF--DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK- 452 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f--~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~- 452 (665)
..|-.+-|.+.+|.-+ ++.+. .--... ++..+...-+|++.|.||+|||-+.++.+..+...++..+-+.-...
T Consensus 342 Sl~PsIyGhe~VK~Gi--lL~Lf-GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGL 418 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGI--LLSLF-GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGL 418 (764)
T ss_pred hhCccccchHHHHhhH--HHHHh-CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccc
Confidence 3455677888887776 44331 000000 11122233479999999999999999999988777766543221110
Q ss_pred ---hhccch--HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccch
Q psy15936 453 ---FIGEGS--RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAG 527 (665)
Q Consensus 453 ---~~g~~~--~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg 527 (665)
.+...+ ...-+.-... -....|-+|||+|++.- ..+..+.+.+++- ..-...||
T Consensus 419 TaaVvkD~esgdf~iEAGALm-LADnGICCIDEFDKMd~-----------~dqvAihEAMEQQ---------tISIaKAG 477 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALM-LADNGICCIDEFDKMDV-----------KDQVAIHEAMEQQ---------TISIAKAG 477 (764)
T ss_pred eEEEEecCCCCceeeecCcEE-EccCceEEechhcccCh-----------HhHHHHHHHHHhh---------eehheecc
Confidence 000000 0000000000 02346889999998632 1233444444321 11123344
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeE-EEEeCCCCHHHHHHHHHHhhc
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDR-KIEFPPPNEEARLDILRIHSR 593 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~-~I~~~~P~~eer~~Il~~~l~ 593 (665)
..|.-.-|. -|+||+|+.. .+.+++++ |||. .|-+.-|++..-..|.++.+.
T Consensus 478 v~aTLnARt------------SIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 478 VVATLNART------------SILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred eEEeecchh------------hhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 444444444 3888888653 36789999 9998 555678888777776666654
Q ss_pred cCCC-CCCCC------H----------------------HHHHH---------------HCCCCCHHHHHHHHHHHHHHH
Q psy15936 594 KMNL-TRGIN------L----------------------RKIAE---------------LMPGASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 594 ~~~~-~~~vd------l----------------------~~la~---------------~t~g~s~~dl~~l~~~A~~~A 629 (665)
.+.. ++... . +.|.+ .+...|.|+|+.+++-+-..|
T Consensus 544 ~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~A 623 (764)
T KOG0480|consen 544 LHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARA 623 (764)
T ss_pred HhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHH
Confidence 3221 11000 0 01111 122467899999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 630 LRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 630 ~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
..+.+..+|.+|..+|++-+..+.
T Consensus 624 r~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 624 RVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred hhhhhhhccHHHHHHHHHHHHhhh
Confidence 888889999999999999887754
No 254
>PRK06526 transposase; Provisional
Probab=98.20 E-value=4.6e-06 Score=86.13 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=54.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhcc-chHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~-~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
.+.+++|+||||||||+||.+++..+ +..++.....++....... ........+... ..+.+++|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~-- 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP-- 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC--
Confidence 56689999999999999999998865 5555555565554433211 001111222221 346799999998643
Q ss_pred CcCCCCCCChHHHHHHHHHHHhh
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
.+...+..+.++++..
T Consensus 173 -------~~~~~~~~L~~li~~r 188 (254)
T PRK06526 173 -------FEPEAANLFFQLVSSR 188 (254)
T ss_pred -------CCHHHHHHHHHHHHHH
Confidence 2334555666766543
No 255
>PRK09183 transposase/IS protein; Provisional
Probab=98.19 E-value=7.6e-06 Score=84.87 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=57.3
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhcc-chHHHHHHHHHHHhcCCeEEEEcCcccccc
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~-~~~~~~~if~~a~~~~p~VlliDEID~l~~ 486 (665)
..+.+++|+||||||||+||.+++..+ |..+..++..++...+... .......++... ...++++++||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 456789999999999999999997654 6667777777665443211 111223344432 24567999999985422
Q ss_pred CCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 487 SRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+......+.++++..
T Consensus 179 ---------~~~~~~~lf~li~~r 193 (259)
T PRK09183 179 ---------SQEEANLFFQVIAKR 193 (259)
T ss_pred ---------ChHHHHHHHHHHHHH
Confidence 224445566666543
No 256
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.8e-05 Score=84.96 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=90.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC------------------------ceEEEechhhhhhhhccchHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC------------------------TFIRVSGSELVQKFIGEGSRMVRELFV 466 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~------------------------~lirv~~~dl~~~~~g~~~~~~~~if~ 466 (665)
.-+-.+||+||+|+||+++|.++|..+-+ .+..+....-. ..-....++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~---~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK---SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc---ccCCHHHHHHHHH
Confidence 34557999999999999999999987632 11111110000 0011223444444
Q ss_pred HHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhh
Q psy15936 467 MAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542 (665)
Q Consensus 467 ~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~d 542 (665)
.+. .....|++||++|++.. ...+ .||..++.-.+..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~-----------~AaN---aLLKtLEEPp~~t------------------------- 139 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD-----------AAAN---ALLKTLEEPPENT------------------------- 139 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH-----------HHHH---HHHHHhcCCCCCe-------------------------
Confidence 332 23457999999998643 3334 4444444422221
Q ss_pred hhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCC
Q psy15936 543 FEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGA 613 (665)
Q Consensus 543 f~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~ 613 (665)
.+|..|+.++.+.|.+++ |+. .+.|++|+.++..+.+... .+.+. .....++..+.|-
T Consensus 140 ------~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G~ 197 (334)
T PRK07993 140 ------WFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAGA 197 (334)
T ss_pred ------EEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCCC
Confidence 588999999999999999 774 6899999988887776532 12221 1234455566653
No 257
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=6.5e-05 Score=79.97 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC-----------------------ceEEEechhhhhhhhccchHHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC-----------------------TFIRVSGSELVQKFIGEGSRMVRELFVM 467 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~-----------------------~lirv~~~dl~~~~~g~~~~~~~~if~~ 467 (665)
.-+-.+||+||.|+||+++|+++|..+-+ .++.+.... ..+. -....++.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHH
Confidence 34557999999999999999999987632 122221100 0000 012234444433
Q ss_pred HH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhh
Q psy15936 468 AR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDF 543 (665)
Q Consensus 468 a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df 543 (665)
+. .....|++||++|.+.. ...+ .|+..++.-....
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~-----------~AaN---aLLKtLEEPp~~t-------------------------- 139 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNE-----------SASN---ALLKTLEEPAPNC-------------------------- 139 (319)
T ss_pred HhhCcccCCceEEEecchhhhCH-----------HHHH---HHHHHhcCCCCCe--------------------------
Confidence 32 22357999999997633 3334 4444444322211
Q ss_pred hccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHH
Q psy15936 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRI 590 (665)
Q Consensus 544 ~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~ 590 (665)
.+|..|+.++.+-|.+++ |+ ..+.|++|+.++..+.+..
T Consensus 140 -----~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 140 -----LFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -----EEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 588889999999999999 87 5899999999888877754
No 258
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.17 E-value=1.9e-05 Score=89.00 Aligned_cols=213 Identities=20% Similarity=0.290 Sum_probs=117.7
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh--
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF-- 453 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~-- 453 (665)
.++.|.....+.+.+.+.. . ......+++.|++||||+++|+++.... +.+|+.++|..+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~----------~-~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~ 206 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGR----------L-SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIE 206 (469)
T ss_pred ccceecCHHHHHHHHHHHH----------H-hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHH
Confidence 3566666666666555432 1 1345679999999999999999998865 4789999998763211
Q ss_pred ---hccchHH-------HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccCcccc
Q psy15936 454 ---IGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATKNIKG 521 (665)
Q Consensus 454 ---~g~~~~~-------~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~~i~~ 521 (665)
.|..... ....|.. ...+.+|+|||+.+. ...|..+..++....- ..+.....
T Consensus 207 ~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~- 271 (469)
T PRK10923 207 SELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVK- 271 (469)
T ss_pred HHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEE-
Confidence 1110000 0001111 234689999999753 3556666666653211 11111011
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCe-eEEEEeCCCCH--HHHHHHHHHh
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRI-DRKIEFPPPNE--EARLDILRIH 591 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRf-d~~I~~~~P~~--eer~~Il~~~ 591 (665)
.-.++|+||+.. ..+.+.|.. |+ ...|.+|+... ++...++.++
T Consensus 272 ------------------------~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~ 325 (469)
T PRK10923 272 ------------------------VDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHF 325 (469)
T ss_pred ------------------------eeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHH
Confidence 011688888653 234455555 55 23555554433 3444566666
Q ss_pred hccC----CCC-CCCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 592 SRKM----NLT-RGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 592 l~~~----~~~-~~vd---l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+... +.. ..++ +..|..+.=.-+.++|+++++.|...+ ....|+.+|+...+
T Consensus 326 l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 326 LQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 5432 211 1223 333333332236688888888886544 45578888876444
No 259
>PRK06921 hypothetical protein; Provisional
Probab=98.13 E-value=2.6e-05 Score=81.25 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
...+++|+||||+|||+|+.++|+.+ +..++++...++...+.... ......+.. -...++|+|||++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEeccc
Confidence 46789999999999999999999976 55667777666544332111 111222222 2346799999995
No 260
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.12 E-value=3.5e-05 Score=86.12 Aligned_cols=204 Identities=22% Similarity=0.318 Sum_probs=111.8
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhcc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE 456 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~ 456 (665)
.+.|.+...+.+...+.. . .....+++++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~-- 206 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEK----------I-APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL-- 206 (445)
T ss_pred ceeecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH--
Confidence 455666666666554432 1 1345679999999999999999997765 46899999987532211
Q ss_pred chHHHHHHHHH---------------HHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCcc
Q psy15936 457 GSRMVRELFVM---------------AREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNI 519 (665)
Q Consensus 457 ~~~~~~~if~~---------------a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i 519 (665)
-..+|.. ......+.+|+|||+.+. ...|..+..++..-. ...+...+
T Consensus 207 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ----ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred ----HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence 1111110 001235689999999763 356666766665421 11111111
Q ss_pred ccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCeeEEEEeCCCCHHHHHH----HH
Q psy15936 520 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRIDRKIEFPPPNEEARLD----IL 588 (665)
Q Consensus 520 ~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd~~I~~~~P~~eer~~----Il 588 (665)
. .-.++|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ ++
T Consensus 272 ~-------------------------~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~ 323 (445)
T TIGR02915 272 P-------------------------VDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLA 323 (445)
T ss_pred e-------------------------eceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHH
Confidence 1 111688888654 233444433 442 34455555555543 55
Q ss_pred HHhhccC----CCC-CCCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy15936 589 RIHSRKM----NLT-RGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 642 (665)
Q Consensus 589 ~~~l~~~----~~~-~~vd---l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 642 (665)
+.++... +.. ..++ +..|..+.=.-+.++|++++++|+..+ ....|+.+|+
T Consensus 324 ~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 324 NAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 5554432 211 1233 333433332236788999999887543 2335555554
No 261
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.12 E-value=1.3e-05 Score=82.17 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=49.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhcc---chHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE---GSRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~---~~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
.+++|+|+||||||+|+.+++..+ +..++.++..++...+... .......++... ...++++|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 589999999999999999999987 6778888887776543221 111122344443 35689999999863
No 262
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=8.7e-06 Score=87.09 Aligned_cols=132 Identities=23% Similarity=0.360 Sum_probs=85.1
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC-------------------------ceEEEechhh---hhhh-hccchHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC-------------------------TFIRVSGSEL---VQKF-IGEGSRMV 461 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~-------------------------~lirv~~~dl---~~~~-~g~~~~~~ 461 (665)
.-+..+||+||+|+|||++|+.+|..+.+ .|+.+....- ..+. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45567999999999999999999997642 2222221100 0000 00123345
Q ss_pred HHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcc
Q psy15936 462 RELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVH 537 (665)
Q Consensus 462 ~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~ 537 (665)
+.+...+.. ....|+++|+++.+ +...++.+..+++.... . .
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~~---~--~------------------ 144 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPPP---Q--V------------------ 144 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCcC---C--C------------------
Confidence 565555442 23568999998865 44556666666655421 1 1
Q ss_pred cchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHH
Q psy15936 538 VTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRI 590 (665)
Q Consensus 538 v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~ 590 (665)
.+|.+|+.++.+.+.+.+ |+ ..+.|++|+.++..+.+..
T Consensus 145 -----------~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 145 -----------VFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -----------EEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 477788888999999988 76 5799999999888777653
No 263
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.05 E-value=7.8e-06 Score=79.97 Aligned_cols=71 Identities=27% Similarity=0.506 Sum_probs=47.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccc-hHHHHHHHHHHHhcCCeEEEEcCccc
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDS 483 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~-~~~~~~if~~a~~~~p~VlliDEID~ 483 (665)
..+.+++|+||+|+|||+||.+++..+ +.....++..++...+-... .......+... ....+++|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 456799999999999999999999865 77788888888766543221 11122333333 3457999999874
No 264
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.02 E-value=8.9e-06 Score=76.01 Aligned_cols=92 Identities=30% Similarity=0.533 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC---ceEEEechhhhhhhhccchH
Q psy15936 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSGSELVQKFIGEGSR 459 (665)
Q Consensus 383 G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~---~lirv~~~dl~~~~~g~~~~ 459 (665)
|.....+++++.+.. +. .....|+|+|++||||+++|+.+....+. +|+.++|.+..
T Consensus 2 G~S~~~~~l~~~l~~-------~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLER-------LA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHH-------HH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHH-------Hh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 555667777666643 11 35567999999999999999999887653 55555665432
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
.+.++. ..+..++++|+|.+ +.+.|..+..++...
T Consensus 62 --~~~l~~---a~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~ 96 (138)
T PF14532_consen 62 --AELLEQ---AKGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQ 96 (138)
T ss_dssp --HHHHHH---CTTSEEEEECGCCS------------HHHHHHHHHHHHHC
T ss_pred --HHHHHH---cCCCEEEECChHHC-----------CHHHHHHHHHHHHhc
Confidence 233444 35679999999976 345677777777653
No 265
>PRK15115 response regulator GlrR; Provisional
Probab=98.02 E-value=6.3e-05 Score=84.10 Aligned_cols=187 Identities=21% Similarity=0.306 Sum_probs=103.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHH---------------HhcCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMA---------------REHAP 473 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a---------------~~~~p 473 (665)
....++++|++||||+++|+++.... +.+|+.++|..+..... -..+|... .....
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 34579999999999999999998764 47899999987532211 11122110 11234
Q ss_pred eEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 474 SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 474 ~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
..+|+|||+.+. ...|..+..++..-. ...+....+. -.++|
T Consensus 230 gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~-------------------------~~rii 273 (444)
T PRK15115 230 GTLFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDI-------------------------DVRII 273 (444)
T ss_pred CEEEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeee-------------------------eEEEE
Confidence 689999999764 355666666664321 1111111111 12688
Q ss_pred EEeCCCCCCCccccCCCCee-------EEEEeCCCCHHHHH----HHHHHhhccC----CCC-CCCC---HHHHHHHCCC
Q psy15936 552 MATNRIDILDPALLRPGRID-------RKIEFPPPNEEARL----DILRIHSRKM----NLT-RGIN---LRKIAELMPG 612 (665)
Q Consensus 552 atTn~~~~Ld~aLlr~gRfd-------~~I~~~~P~~eer~----~Il~~~l~~~----~~~-~~vd---l~~la~~t~g 612 (665)
+||+.. +...+ ..|+|. ..+.+..|...+|. .+++.++... +.. ..++ +..|..+.=.
T Consensus 274 ~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~Wp 350 (444)
T PRK15115 274 SATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 (444)
T ss_pred EeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCC
Confidence 888753 22222 223331 14555566666664 3445555432 111 1233 3444444422
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
-+.++++++++.|+..+ ....|+.+++...+
T Consensus 351 gNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 351 GNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred ChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 36788888888886543 34467777765443
No 266
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.01 E-value=3.5e-05 Score=79.69 Aligned_cols=71 Identities=23% Similarity=0.420 Sum_probs=50.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchH--HHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSR--MVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~--~~~~if~~a~~~~p~VlliDEID~l 484 (665)
.+.+++|+||||+|||+||.|+++.+ |..++.+..+++....-..-.. .-..+.... ...++++|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 78899999999999999999999876 6778888888887654322111 111222211 34579999998753
No 267
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.00 E-value=9.7e-05 Score=82.81 Aligned_cols=190 Identities=22% Similarity=0.291 Sum_probs=102.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh-----hccchHH-------HHHHHHHHHhcCCeEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF-----IGEGSRM-------VRELFVMAREHAPSII 476 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~-----~g~~~~~-------~~~if~~a~~~~p~Vl 476 (665)
....++++|++||||+++|+++.... +.+|+.++|..+.... .|..... ....+.. ....++
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 241 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTL 241 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEE
Confidence 44679999999999999999997654 5789999998763221 1100000 0001111 234689
Q ss_pred EEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 477 FMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 477 liDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
|+|||+.+. ...|..+..++..-. ...+...+ ....++|+||
T Consensus 242 ~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~-------------------------~~~~rii~~t 285 (457)
T PRK11361 242 LLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTI-------------------------KVDIRIIAAT 285 (457)
T ss_pred EEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCcee-------------------------eeceEEEEeC
Confidence 999999763 355666666665421 11111101 0112688888
Q ss_pred CCC-------CCCCccccCCCCeeEEEEeCCCCHHHHH----HHHHHhhccC----CCC-CCCCHH---HHHHHCCCCCH
Q psy15936 555 NRI-------DILDPALLRPGRIDRKIEFPPPNEEARL----DILRIHSRKM----NLT-RGINLR---KIAELMPGASG 615 (665)
Q Consensus 555 n~~-------~~Ld~aLlr~gRfd~~I~~~~P~~eer~----~Il~~~l~~~----~~~-~~vdl~---~la~~t~g~s~ 615 (665)
+.. ..+.+.+.. |+. .+.+..|...+|. .++..++... +.. ..++-+ .+..+.=.-+.
T Consensus 286 ~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 362 (457)
T PRK11361 286 NRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362 (457)
T ss_pred CCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcH
Confidence 753 123333332 332 3555556665554 3444444432 111 123333 33333222367
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 616 ~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+++++++++|...+ ....|+.+|+...+
T Consensus 363 ~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 363 RELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 88888888876543 34467777775433
No 268
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.99 E-value=4.5e-05 Score=80.94 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=48.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccc-hHHHHHHHHHHHhcCCeEEEEcCccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDS 483 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~-~~~~~~if~~a~~~~p~VlliDEID~ 483 (665)
.+.+++|+||+|||||+||.++|+.+ +..+..+..+++...+.... .......+... ...++|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 46799999999999999999999987 67777777777654432111 01122333332 3457999999974
No 269
>KOG0990|consensus
Probab=97.96 E-value=7.2e-05 Score=77.70 Aligned_cols=168 Identities=19% Similarity=0.234 Sum_probs=106.2
Q ss_pred hhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-----
Q psy15936 366 SLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT----- 440 (665)
Q Consensus 366 ~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~----- 440 (665)
..-+.+..++....++.+.++....+.+... ...-.+.|+|||||+|||+...+.|..+-.+
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~-------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSG-------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhcc-------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 3445666777777778777777776666532 2333489999999999999999999987553
Q ss_pred -eEEEechhhhhhhhccchHHHHHHHHHHHh-------cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 441 -FIRVSGSELVQKFIGEGSRMVRELFVMARE-------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 441 -lirv~~~dl~~~~~g~~~~~~~~if~~a~~-------~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
+...+.++-. .-...+....+|...+. ..+.++++||.|.+.. +.|+.+...+ ..
T Consensus 95 m~lelnaSd~r---gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRvi---ek 157 (360)
T KOG0990|consen 95 MLLELNASDDR---GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVI---EK 157 (360)
T ss_pred HHHHhhccCcc---CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHH---HH
Confidence 1112222210 11112233445555442 2678999999997532 3344444322 22
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
+.. ++ +++..+|++..+-|++++ ||. .+.|.+.+.+.-...+.+++
T Consensus 158 ~t~-----n~--------------------------rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 158 YTA-----NT--------------------------RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred hcc-----ce--------------------------EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHH
Confidence 211 11 466778999999999998 773 67788888888888888777
Q ss_pred ccCCC
Q psy15936 593 RKMNL 597 (665)
Q Consensus 593 ~~~~~ 597 (665)
..-..
T Consensus 204 e~e~~ 208 (360)
T KOG0990|consen 204 ESEQK 208 (360)
T ss_pred hcchh
Confidence 65443
No 270
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.95 E-value=0.00014 Score=90.75 Aligned_cols=56 Identities=25% Similarity=0.473 Sum_probs=44.1
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.+...++++.|.+...+++..++.+ +......+-|+|++|+||||||+++++.+..
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 3445667889999999998877754 2345667889999999999999999887643
No 271
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.94 E-value=8.1e-05 Score=83.61 Aligned_cols=212 Identities=20% Similarity=0.295 Sum_probs=117.4
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhh--
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFI-- 454 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~-- 454 (665)
.+.|.....+.+.+.+.. -......+++.|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~v~~~i~~-----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHH-----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 355666665655544432 11345679999999999999999998764 47899999987532211
Q ss_pred ---ccchHH-------HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccCccccc
Q psy15936 455 ---GEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATKNIKGV 522 (665)
Q Consensus 455 ---g~~~~~-------~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~~i~~v 522 (665)
|..... ....+. ....+.+|||||+.+. ...+..+..++..... ..+...+.
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~-- 267 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIK-- 267 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCceee--
Confidence 100000 000011 1235689999999763 3556666666653221 11111010
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCC--HHHHHHHHHHhh
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPN--EEARLDILRIHS 592 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~--~eer~~Il~~~l 592 (665)
.-.++|++|+.. ..+.+.|.. |+. ..|.+|++. .++...++..++
T Consensus 268 -----------------------~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l 322 (463)
T TIGR01818 268 -----------------------VDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFL 322 (463)
T ss_pred -----------------------eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHH
Confidence 011588888653 123334443 443 266666665 456666776665
Q ss_pred ccCC----CC-CCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 593 RKMN----LT-RGINLRKIAELMP---GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 593 ~~~~----~~-~~vdl~~la~~t~---g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
.... .. ..++-+.+..... --+-++|+++++.|+..+ ....|+.+|+...+
T Consensus 323 ~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 323 ALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 4431 11 1233333333222 125588999998887654 34578888886555
No 272
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.88 E-value=0.00074 Score=70.62 Aligned_cols=175 Identities=19% Similarity=0.280 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHh--hCCc-----eEEEech----hh----
Q psy15936 385 DNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH--TECT-----FIRVSGS----EL---- 449 (665)
Q Consensus 385 ~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~--l~~~-----lirv~~~----dl---- 449 (665)
+..++++.+.+.. .. .....+.|+|++|+|||+||..+++. .... ++..+.. ++
T Consensus 2 e~~~~~l~~~L~~----------~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLD----------NS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHT----------TT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhC----------CC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 3456666665543 11 46677899999999999999999977 4322 2222211 11
Q ss_pred hhhhhc--------cchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccc
Q psy15936 450 VQKFIG--------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521 (665)
Q Consensus 450 ~~~~~g--------~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~ 521 (665)
...+.. .........+.......+.++++|+++... .+..+...+...+.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~------ 128 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSFSS------ 128 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCHHS------
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeecccc----------------cccccccccccccc------
Confidence 111111 112223333334444558999999988421 12222221111100
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC----C
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN----L 597 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~----~ 597 (665)
..+||.||....... ..- .-...++++..+.++-.++|........ .
T Consensus 129 -------------------------~~kilvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~ 179 (287)
T PF00931_consen 129 -------------------------GSKILVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPE 179 (287)
T ss_dssp -------------------------S-EEEEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----T
T ss_pred -------------------------ccccccccccccccc-ccc---ccccccccccccccccccccccccccccccccc
Confidence 016888887532211 111 1146899999999999999998876544 1
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHH
Q psy15936 598 TRGINLRKIAELMPGASGAEVKGVC 622 (665)
Q Consensus 598 ~~~vdl~~la~~t~g~s~~dl~~l~ 622 (665)
........|+..+.| .|-.|..+.
T Consensus 180 ~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 180 DLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp TSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccc-ccccccccc
Confidence 112235678889887 455555443
No 273
>PF05729 NACHT: NACHT domain
Probab=97.86 E-value=0.00016 Score=68.68 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHhh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l 437 (665)
-++|+|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999765
No 274
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=0.00014 Score=68.46 Aligned_cols=95 Identities=23% Similarity=0.375 Sum_probs=53.2
Q ss_pred EEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh----------------------hhcc--chHHHHHHHHHH
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK----------------------FIGE--GSRMVRELFVMA 468 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~----------------------~~g~--~~~~~~~if~~a 468 (665)
++++||||+|||+++..++..+ +..++.++....... .... .......+...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 345555443322110 0000 111112234445
Q ss_pred HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 469 REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 469 ~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
....+.++++||+..+.........+.+....+.+..+....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 123 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA 123 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 567788999999997654321101122333445555555544
No 275
>KOG1970|consensus
Probab=97.81 E-value=0.00047 Score=76.27 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=46.8
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
-+++...+.+.+++.-...-+.++++++. +-..|. .--..+-+||+||+||||||.++-++.++|..++.
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~----~~~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLK----QVAEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHH----HHHHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 35566666676666555555566666654 111111 11233468899999999999999999999987765
No 276
>KOG2170|consensus
Probab=97.79 E-value=0.00021 Score=73.79 Aligned_cols=212 Identities=19% Similarity=0.252 Sum_probs=110.9
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----ceEE--Eechhh--h
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFIR--VSGSEL--V 450 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~-----~lir--v~~~dl--~ 450 (665)
.+.|+.-+++.+-..+.-.+.++ .-.+|-.+=|+|++||||...++.+|+.+-. +++. +...++ .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 35677777777766664422222 1123445568999999999999999997632 2211 000010 0
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh---hcCCcccCccccccccch
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ---LDGFEATKNIKGVCTEAG 527 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~---~d~~~~~~~i~~vc~eAg 527 (665)
........+....+...+..+..++.++||+|++.+ .....+.-+++. .+|.+....+-.+.+++|
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 111122333345556666678889999999998743 344444445542 223322222323333333
Q ss_pred hhhhh----------hhhcccchhhhhccccEEEEEeCCC-C-CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 528 MYALR----------ERRVHVTQEDFEMAVAKVIMATNRI-D-ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 528 ~~air----------~~r~~v~~~df~~a~~~VIatTn~~-~-~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
..-+. ..|..+.-++|+.+... ++-|.. . .....+.+..++|..|.|.+.+...-...++..+.+.
T Consensus 226 g~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~--~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~r 303 (344)
T KOG2170|consen 226 GSEIARIALENARNGKPREQLRLKSFEPALMQ--SAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKR 303 (344)
T ss_pred chHHHHHHHHHHHcCCCcccchhhhhhHHHHH--hhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhc
Confidence 21111 12334445555544221 111221 1 1123344445666777787888777777777777777
Q ss_pred CCCCCCC-HHHHHHHC
Q psy15936 596 NLTRGIN-LRKIAELM 610 (665)
Q Consensus 596 ~~~~~vd-l~~la~~t 610 (665)
++..+.+ .+.++...
T Consensus 304 g~~~d~~~~erva~~l 319 (344)
T KOG2170|consen 304 GLAPDQDFVERVANSL 319 (344)
T ss_pred ccccchHHHHHHHHhh
Confidence 6655544 34455443
No 277
>KOG0482|consensus
Probab=97.73 E-value=0.00013 Score=79.54 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=129.7
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHH--HhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELF--DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 457 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f--~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~ 457 (665)
.+.|.+++++.+.-++.- .++.- +.+.+...-+|+|.|.||+.||-|.+.+.+......+..++..- -+|-.
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS---GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS---GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC---ccccc
Confidence 577888888887444432 22111 11222333469999999999999999998877666655443321 01111
Q ss_pred hHHHHH------HHHH-H-HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 458 SRMVRE------LFVM-A-REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 458 ~~~~~~------if~~-a-~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
....++ .++- | --....|.+|||+|++... -+..+.+.+++-. .+ ...||..
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-----------DRtAIHEVMEQQT-IS--------IaKAGI~ 476 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-----------DRTAIHEVMEQQT-IS--------IAKAGIN 476 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-----------hhHHHHHHHHhhh-hh--------hhhhccc
Confidence 110000 0000 0 0012358899999986432 1233455554311 00 1122322
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeEE-EEeCCCCHHHHHHHHHHhhc--
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDRK-IEFPPPNEEARLDILRIHSR-- 593 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~~-I~~~~P~~eer~~Il~~~l~-- 593 (665)
..-.-|. -|++|+|+.. .|+.||++ |||.. +-...|+.+.-..+.++..-
T Consensus 477 TtLNAR~------------sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH 542 (721)
T KOG0482|consen 477 TTLNART------------SILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVH 542 (721)
T ss_pred cchhhhH------------HhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhh
Confidence 2222222 4788888653 47899999 99984 44458888766666665431
Q ss_pred cCCCCCC-----CCHH----------------------HHHH-------H---C---CCCCHHHHHHHHHHHHHHHHHhc
Q psy15936 594 KMNLTRG-----INLR----------------------KIAE-------L---M---PGASGAEVKGVCTEAGMYALRER 633 (665)
Q Consensus 594 ~~~~~~~-----vdl~----------------------~la~-------~---t---~g~s~~dl~~l~~~A~~~A~~~~ 633 (665)
.++-.+. ++.. .+.. . . .-.|++.|-.+++-+...|..+-
T Consensus 543 ~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRl 622 (721)
T KOG0482|consen 543 QHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRL 622 (721)
T ss_pred ccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhh
Confidence 1111111 2211 1110 0 0 12367888899998888888888
Q ss_pred CCCCCHHHHHHHHHHHhh
Q psy15936 634 RVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 634 ~~~It~~d~~~Al~~~~~ 651 (665)
...+..+|+.+|++-+.-
T Consensus 623 s~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 623 SDSVEEDDVNEALRLMEM 640 (721)
T ss_pred ccccchhhHHHHHHHHHh
Confidence 889999999999987643
No 278
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.72 E-value=0.00061 Score=69.41 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=76.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIES 491 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~ 491 (665)
...+-.++||+|||||..++.+|..+|..++.++|++-. +...+..+|.-+.. ..+.+++||++.+.
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~-~GaW~cfdefnrl~------ 97 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQ-SGAWLCFDEFNRLS------ 97 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS------
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhh-cCchhhhhhhhhhh------
Confidence 345667899999999999999999999999999998743 33455666655443 35799999999763
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhccc--chhhhhc-cccEEEEEeCC----CCCCCccc
Q psy15936 492 GSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHV--TQEDFEM-AVAKVIMATNR----IDILDPAL 564 (665)
Q Consensus 492 ~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v--~~~df~~-a~~~VIatTn~----~~~Ld~aL 564 (665)
.++...+.+.+..+.. +++.+...+ ....+.. ....+..|.|+ ...+|+.+
T Consensus 98 -----~~vLS~i~~~i~~i~~-----------------al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nL 155 (231)
T PF12774_consen 98 -----EEVLSVISQQIQSIQD-----------------ALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENL 155 (231)
T ss_dssp -----HHHHHHHHHHHHHHHH-----------------HHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHH
T ss_pred -----HHHHHHHHHHHHHHHH-----------------hhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhH
Confidence 3444444444433211 111111110 0000000 01135556663 34688888
Q ss_pred cCCCCeeEEEEeCCCCHHHHHHHH
Q psy15936 565 LRPGRIDRKIEFPPPNEEARLDIL 588 (665)
Q Consensus 565 lr~gRfd~~I~~~~P~~eer~~Il 588 (665)
+. -| +.+.+..||.....+++
T Consensus 156 k~--lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 156 KA--LF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp CT--TE-EEEE--S--HHHHHHHH
T ss_pred HH--Hh-heeEEeCCCHHHHHHHH
Confidence 76 55 78999999986655544
No 279
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.70 E-value=3.4e-05 Score=80.59 Aligned_cols=147 Identities=22% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCce---EEEechhhhhhhhccchHHHHHHHHHHH-----------hcCCeEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTF---IRVSGSELVQKFIGEGSRMVRELFVMAR-----------EHAPSIIF 477 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~l---irv~~~dl~~~~~g~~~~~~~~if~~a~-----------~~~p~Vll 477 (665)
...++||+||+|||||+++++....++..- ..+.++... ....+..+++... .....|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 567899999999999999999888776432 233333211 1111111111100 11235999
Q ss_pred EcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC
Q psy15936 478 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI 557 (665)
Q Consensus 478 iDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~ 557 (665)
+||++.-.... -++ +...++++++-...|--+. ...... .+. ...+++|++++
T Consensus 106 iDDlN~p~~d~----ygt-----q~~iElLRQ~i~~~g~yd~-------------~~~~~~---~i~--~i~~vaa~~p~ 158 (272)
T PF12775_consen 106 IDDLNMPQPDK----YGT-----QPPIELLRQLIDYGGFYDR-------------KKLEWK---SIE--DIQFVAAMNPT 158 (272)
T ss_dssp EETTT-S---T----TS-------HHHHHHHHHHHCSEEECT-------------TTTEEE---EEC--SEEEEEEESST
T ss_pred ecccCCCCCCC----CCC-----cCHHHHHHHHHHhcCcccC-------------CCcEEE---EEe--eeEEEEecCCC
Confidence 99998532211 111 2234566554332221000 000000 000 11467777754
Q ss_pred C---CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 558 D---ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 558 ~---~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
. .+++.|+| .| ..+.++.|+.+....|+..++..
T Consensus 159 ~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 159 GGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp TT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHhh
Confidence 3 36778887 67 58999999999999888876653
No 280
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=9.4e-05 Score=74.87 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=25.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..|-+.||+|||||||.+.+|...
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677889999999999999999999744
No 281
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.68 E-value=6.8e-05 Score=68.67 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=46.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh--------CCceEEEechhhhhh----------h--h--c--cchHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT--------ECTFIRVSGSELVQK----------F--I--G--EGSRMVRELFVM 467 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l--------~~~lirv~~~dl~~~----------~--~--g--~~~~~~~~if~~ 467 (665)
....++++||||+|||++++.+++.+ +..++.+.+...... + . . ........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999987 677787776543210 0 1 1 122333344444
Q ss_pred HHhcCCeEEEEcCcccc
Q psy15936 468 AREHAPSIIFMDEIDSI 484 (665)
Q Consensus 468 a~~~~p~VlliDEID~l 484 (665)
...+...++++||+|.+
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 44454459999999975
No 282
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0024 Score=64.85 Aligned_cols=74 Identities=26% Similarity=0.210 Sum_probs=60.7
Q ss_pred CeeEEEEeCCCCHHHHHHHHHHhhccCCCC----CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy15936 569 RIDRKIEFPPPNEEARLDILRIHSRKMNLT----RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 643 (665)
Q Consensus 569 Rfd~~I~~~~P~~eer~~Il~~~l~~~~~~----~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 643 (665)
|++..|++++.+.++-...++.+++.-+.. .+.-+..+...+.| .|+-+.++|..|...|+..+...|+...+.
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 888889999999999999999998876544 33336677778888 689999999999999999998888876543
No 283
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.62 E-value=0.00017 Score=64.44 Aligned_cols=23 Identities=43% Similarity=0.884 Sum_probs=20.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhhC
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~ 438 (665)
|.|+||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 284
>KOG0477|consensus
Probab=97.62 E-value=0.00066 Score=75.81 Aligned_cols=196 Identities=21% Similarity=0.334 Sum_probs=112.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh-------------hhhhhccchHHHHHHHHHHHhcCCeEEEEcCc
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL-------------VQKFIGEGSRMVRELFVMAREHAPSIIFMDEI 481 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl-------------~~~~~g~~~~~~~~if~~a~~~~p~VlliDEI 481 (665)
+|||+|.||||||-+.+..++....+++..+-..- ..+|..+... +-. ....|.+|||+
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGA-----LVL---ADkGvClIDEF 555 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGA-----LVL---ADKGVCLIDEF 555 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCe-----EEE---ccCceEEeehh
Confidence 69999999999999999999988877776442211 1112111111 001 23468899999
Q ss_pred cccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---
Q psy15936 482 DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID--- 558 (665)
Q Consensus 482 D~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~--- 558 (665)
|++.... +..+.+.+.+- ..+ +..||....-..| ..||+|+|+..
T Consensus 556 DKMndqD-----------RtSIHEAMEQQ-SIS--------ISKAGIVtsLqAr------------ctvIAAanPigGRY 603 (854)
T KOG0477|consen 556 DKMNDQD-----------RTSIHEAMEQQ-SIS--------ISKAGIVTSLQAR------------CTVIAAANPIGGRY 603 (854)
T ss_pred hhhcccc-----------cchHHHHHHhc-chh--------hhhhhHHHHHHhh------------hhhheecCCCCCcc
Confidence 9874321 11233333321 111 1223332222211 14899998731
Q ss_pred ----------CCCccccCCCCeeEEEEeC---CCCHHHHH--HHHHHhhccCCCC-------------------------
Q psy15936 559 ----------ILDPALLRPGRIDRKIEFP---PPNEEARL--DILRIHSRKMNLT------------------------- 598 (665)
Q Consensus 559 ----------~Ld~aLlr~gRfd~~I~~~---~P~~eer~--~Il~~~l~~~~~~------------------------- 598 (665)
.+...+++ |||....+. .|-.+++. -++..|.+..+-.
T Consensus 604 ~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrk 681 (854)
T KOG0477|consen 604 NPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRK 681 (854)
T ss_pred CCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHH
Confidence 34567788 999866554 33333333 2444444322111
Q ss_pred -------------CCCCHHHHHHH---------CCC---CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 599 -------------RGINLRKIAEL---------MPG---ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 599 -------------~~vdl~~la~~---------t~g---~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
...|.+.++.. ..| .+.+-|..+++-+...|...-+..++.+|+..|++-++.+
T Consensus 682 yI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 682 YIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 12233334332 112 3568899999988888888888899999999999888765
No 285
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.61 E-value=0.00065 Score=75.78 Aligned_cols=188 Identities=20% Similarity=0.297 Sum_probs=100.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHH---------------HHhcC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVM---------------AREHA 472 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~---------------a~~~~ 472 (665)
.....++++|.+||||+++|+++.... +.+|+.++|..+..... -..+|.. .....
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEAD 233 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECC
Confidence 345679999999999999999997654 57899999986532211 0111110 01123
Q ss_pred CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCccccccccchhhhhhhhhcccchhhhhccccEE
Q psy15936 473 PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550 (665)
Q Consensus 473 p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~V 550 (665)
++.+|+|||+.+.. ..|..+..++..-. ...+...+ ..-.++
T Consensus 234 ~gtl~ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~-------------------------~~~~ri 277 (441)
T PRK10365 234 GGTLFLDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQTI-------------------------SVDVRL 277 (441)
T ss_pred CCEEEEeccccCCH-----------HHHHHHHHHHccCcEEeCCCCcee-------------------------eeceEE
Confidence 57899999998643 45555555554321 01111000 001157
Q ss_pred EEEeCCCCCCCccccCCCCeeE-------EEEeCCCCHHHH----HHHHHHhhccC----CCC-CCCC---HHHHHHHCC
Q psy15936 551 IMATNRIDILDPALLRPGRIDR-------KIEFPPPNEEAR----LDILRIHSRKM----NLT-RGIN---LRKIAELMP 611 (665)
Q Consensus 551 IatTn~~~~Ld~aLlr~gRfd~-------~I~~~~P~~eer----~~Il~~~l~~~----~~~-~~vd---l~~la~~t~ 611 (665)
|+||+..- .....+|+|.. .+.+..|...+| ..+++.++... +.. ..++ +..|....=
T Consensus 278 i~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 354 (441)
T PRK10365 278 IAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 (441)
T ss_pred EEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCC
Confidence 87776531 12222334421 345555555544 44555555432 111 1133 333333331
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
.-+.++++++++.|...+ ....|+.+|+...+
T Consensus 355 pgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 355 PGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 225688888888876542 34457777765433
No 286
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.53 E-value=0.00039 Score=75.42 Aligned_cols=30 Identities=37% Similarity=0.619 Sum_probs=26.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
..+++|++|||++|+|||+|+-.+.+.+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 457899999999999999999999888765
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.53 E-value=0.00041 Score=67.14 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=29.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.++++||||+||||+|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999998877664
No 288
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.50 E-value=0.00053 Score=65.94 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhh--------hhh---hh--ccchHHHHHHHHHHHhcCC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSEL--------VQK---FI--GEGSRMVRELFVMAREHAP 473 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl--------~~~---~~--g~~~~~~~~if~~a~~~~p 473 (665)
.+.++..+.|.||+|+|||+|++.++....+ --+.++..++ ... +. .......+-.+..+....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 3568889999999999999999999987532 1122222111 000 11 1222334555666667889
Q ss_pred eEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 474 SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 474 ~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
.++++|| +..+.+....+.+.+++..+.
T Consensus 102 ~illlDE----------P~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 102 RLLILDE----------PTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred CEEEEEC----------CCcCCCHHHHHHHHHHHHHHH
Confidence 9999999 456778888888888887653
No 289
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.48 E-value=0.00095 Score=62.85 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=58.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechhhhhhhh-ccchHHHHHHHHHHHhcCCeEEEEcCccccc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIG 485 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~dl~~~~~-g~~~~~~~~if~~a~~~~p~VlliDEID~l~ 485 (665)
.+.++..+.+.||+|+|||+|++.++..+.+. -+.++........+ .......+-.+..+....|.++++||
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDE----- 96 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDE----- 96 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeC-----
Confidence 35678889999999999999999999876421 11111110000000 12223334445566667899999999
Q ss_pred cCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 486 SSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+..+.+......+.+++...
T Consensus 97 -----P~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 97 -----PTNHLDLESIEALEEALKEY 116 (144)
T ss_pred -----CccCCCHHHHHHHHHHHHHc
Confidence 44567777777777777654
No 290
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.47 E-value=0.00039 Score=70.05 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.+.++..+.+.||+|||||||...++.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 456788899999999999999999975
No 291
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.44 E-value=0.00055 Score=68.35 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=50.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhh----hhhhhc-------------------cchHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL----VQKFIG-------------------EGSRMVR 462 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl----~~~~~g-------------------~~~~~~~ 462 (665)
|++++..++++||||+|||+++..++... +...++++...+ ...... .....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888899999999999999999988643 455666665431 000000 0011133
Q ss_pred HHHHHHHhcCCeEEEEcCcccccc
Q psy15936 463 ELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 463 ~if~~a~~~~p~VlliDEID~l~~ 486 (665)
.+...+..+.+++++||.+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334444556789999999998754
No 292
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00045 Score=72.37 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec--------hhhhhhhhc-----cchHHHHHHHHHHHh----cCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG--------SELVQKFIG-----EGSRMVRELFVMARE----HAP 473 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~--------~dl~~~~~g-----~~~~~~~~if~~a~~----~~p 473 (665)
.-+-.+||+||+|+||+.+|.++|..+-+.--...| +|+..-.+. -....++.+...+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 345578999999999999999999876431000011 111000000 012334444444322 234
Q ss_pred eEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEE
Q psy15936 474 SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553 (665)
Q Consensus 474 ~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIat 553 (665)
.|++|+++|++.. +.++.+..++++... . . .+|..
T Consensus 97 kv~ii~~ad~mt~-----------~AaNaLLK~LEEPp~---~--~-----------------------------~fiL~ 131 (290)
T PRK05917 97 KIYIIHEADRMTL-----------DAISAFLKVLEDPPQ---H--G-----------------------------VIILT 131 (290)
T ss_pred eEEEEechhhcCH-----------HHHHHHHHHhhcCCC---C--e-----------------------------EEEEE
Confidence 6999999998643 344455555544322 1 1 58888
Q ss_pred eCCCCCCCccccCCCCeeEEEEeCCCC
Q psy15936 554 TNRIDILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 554 Tn~~~~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
|+.++.+.|.+++ |+ ..+.|+++.
T Consensus 132 ~~~~~~ll~TI~S--Rc-q~~~~~~~~ 155 (290)
T PRK05917 132 SAKPQRLPPTIRS--RS-LSIHIPMEE 155 (290)
T ss_pred eCChhhCcHHHHh--cc-eEEEccchh
Confidence 8889999999998 77 467787653
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.41 E-value=0.00044 Score=83.75 Aligned_cols=147 Identities=27% Similarity=0.287 Sum_probs=89.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-------hhhcc--chHHHH-HHHHHHHhcCCeEEEEcCc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-------KFIGE--GSRMVR-ELFVMAREHAPSIIFMDEI 481 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-------~~~g~--~~~~~~-~if~~a~~~~p~VlliDEI 481 (665)
-.+++||-|.||+|||+|.+++|+..|..++|++.++-.. ..|++ ++-.++ .=|-.|. .....+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-r~G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-RDGGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-hcCCEEEeehh
Confidence 3467999999999999999999999999999999875321 12222 111111 2233333 33468999999
Q ss_pred cccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhcccc-EEEEEeCCCC--
Q psy15936 482 DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA-KVIMATNRID-- 558 (665)
Q Consensus 482 D~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~-~VIatTn~~~-- 558 (665)
+. ..|.++.-|-.++|....+- + ++ ..+.|.+... +|.||-|+.+
T Consensus 1621 NL--------------aSQSVlEGLNacLDhR~eay-I------------PE-----ld~~f~~HpnfrVFAaqNPq~qg 1668 (4600)
T COG5271 1621 NL--------------ASQSVLEGLNACLDHRREAY-I------------PE-----LDKTFDVHPNFRVFAAQNPQDQG 1668 (4600)
T ss_pred hh--------------hHHHHHHHHHHHHhhccccc-c------------cc-----ccceeeccCCeeeeeecCchhcC
Confidence 84 22333433333443321110 0 11 0112222211 4555556543
Q ss_pred ----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 559 ----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 559 ----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
.+|..++. || .+|.+..++.++...|....+..
T Consensus 1669 gGRKgLPkSF~n--RF-svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1669 GGRKGLPKSFLN--RF-SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred CCcccCCHHHhh--hh-heEEecccccchHHHHHHhhCCc
Confidence 58899998 99 58899999999999988876653
No 294
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.40 E-value=0.00096 Score=65.18 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=58.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhh--hhhhh-ccchHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSEL--VQKFI-GEGSRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl--~~~~~-g~~~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
+.++..+.|.||+|+|||||++.++..+.+ --+.++...+ ..... .......+-.+..+....|.++++||
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDE---- 97 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDE---- 97 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEEC----
Confidence 467888999999999999999999986532 1222222111 00100 12222334445556667899999999
Q ss_pred ccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 485 GSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+.++.+...+..+..++..+
T Consensus 98 ------Pts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 98 ------PSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred ------CcccCCHHHHHHHHHHHHHH
Confidence 45667777777777777654
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.36 E-value=0.0022 Score=62.57 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-------------eEEEechhhhhhhh------------ccchHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-------------FIRVSGSELVQKFI------------GEGSRMVRE 463 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~-------------lirv~~~dl~~~~~------------g~~~~~~~~ 463 (665)
.+.++..+.|.||+|+|||||.+.+....+.. +..+.-.+....+. .......+-
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl 96 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRV 96 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence 35677889999999999999999996422211 11111001111111 011122334
Q ss_pred HHHHHHhcC--CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 464 LFVMAREHA--PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 464 if~~a~~~~--p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
.+..+.... |.++++|| +..+.+......+.+++..+
T Consensus 97 ~laral~~~~~p~llLlDE----------Pt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 97 KLASELFSEPPGTLFILDE----------PSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred HHHHHHhhCCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHH
Confidence 445555667 89999999 44567777777777777665
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.34 E-value=0.00092 Score=74.76 Aligned_cols=80 Identities=26% Similarity=0.414 Sum_probs=55.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhh------c--------cchHHHHHHHHHHHhc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFI------G--------EGSRMVRELFVMAREH 471 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~------g--------~~~~~~~~if~~a~~~ 471 (665)
|+.++..++|+|+||+|||+++..++... +...++++..+....+. + ..+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 68888899999999999999999998765 55667766543222110 0 0112244566666667
Q ss_pred CCeEEEEcCccccccCC
Q psy15936 472 APSIIFMDEIDSIGSSR 488 (665)
Q Consensus 472 ~p~VlliDEID~l~~~~ 488 (665)
.|.++++|++..+....
T Consensus 156 ~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CCCEEEEechhhhcccc
Confidence 89999999999876543
No 297
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0042 Score=65.31 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=85.4
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEE--Eec--------------hhhhhhhh-c--cchHHHHHHHHHHHh-
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR--VSG--------------SELVQKFI-G--EGSRMVRELFVMARE- 470 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir--v~~--------------~dl~~~~~-g--~~~~~~~~if~~a~~- 470 (665)
.-+..+||+|| +||+++|+.+|..+-+.-.. ..| +|+..-.+ | -....++.+...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34567899996 68999999999866321100 000 11111001 1 112344555444332
Q ss_pred ---cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccc
Q psy15936 471 ---HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547 (665)
Q Consensus 471 ---~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~ 547 (665)
....|++||++|.+.. .. .+.|+..++.-....
T Consensus 100 p~~~~~kV~II~~ad~m~~-----------~A---aNaLLKtLEEPp~~t------------------------------ 135 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV-----------NA---ANSLLKVIEEPQSEI------------------------------ 135 (290)
T ss_pred cccCCcEEEEeehhhhcCH-----------HH---HHHHHHHhcCCCCCe------------------------------
Confidence 2347999999998643 23 344454444422111
Q ss_pred cEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Q psy15936 548 AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 622 (665)
Q Consensus 548 ~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~ 622 (665)
.+|..|+.++.+-|.+++ |+ ..+.|+. +.++..+++. ..++..+ ...++....| +++....+.
T Consensus 136 -~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~----~~g~~~~--~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 136 -YIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE----QKGLLKT--QAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred -EEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH----HcCCChH--HHHHHHHHCC-CHHHHHHHh
Confidence 488888889999999999 77 5788866 5555555554 2333322 2333334444 565555555
No 298
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0029 Score=65.07 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCce--------------EEEechhhhhhhhc---cchHHHHHHHHHHH----
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTF--------------IRVSGSELVQKFIG---EGSRMVRELFVMAR---- 469 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~l--------------irv~~~dl~~~~~g---~~~~~~~~if~~a~---- 469 (665)
..+-..||+||.|+||..+|.++|..+-+.- ..-.-+|+..-++. -....++++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4667899999999999999999998662210 00000111110111 11223344433322
Q ss_pred h-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhcccc
Q psy15936 470 E-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVA 548 (665)
Q Consensus 470 ~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~ 548 (665)
. ....|++|+++|++.. .. .+.||..++.-... .
T Consensus 85 e~~~~KV~II~~ae~m~~-----------~A---aNaLLK~LEEPp~~--t----------------------------- 119 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-----------QS---ANSLLKLIEEPPKN--T----------------------------- 119 (261)
T ss_pred hcCCCEEEEeccHhhhCH-----------HH---HHHHHHhhcCCCCC--e-----------------------------
Confidence 1 2357999999997633 33 34444444432111 1
Q ss_pred EEEEEeCCCCCCCccccCCCCeeEEEEeCCC
Q psy15936 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPP 579 (665)
Q Consensus 549 ~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P 579 (665)
.+|..|+.++.+.|.+++ |+ ..+.|+.+
T Consensus 120 ~fiLit~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 120 YGIFTTRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred EEEEEECChHhCchHhhh--he-eeeecCCh
Confidence 588999999999999999 87 45777766
No 299
>KOG1968|consensus
Probab=97.30 E-value=0.00059 Score=81.08 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=101.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhcc-------chHHHHHHHH-----HHHhcCCeEEEEcCcc
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE-------GSRMVRELFV-----MAREHAPSIIFMDEID 482 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~-------~~~~~~~if~-----~a~~~~p~VlliDEID 482 (665)
.++++||||+|||+.+...|..++..++..+.++..+..... ....+..-+. ........|+++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 368999999999999999999999999999888665443211 1111222220 0001112399999999
Q ss_pred ccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCc
Q psy15936 483 SIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP 562 (665)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~ 562 (665)
-++. .+......+..++... ...+|+++|.......
T Consensus 439 ~~~~--------~dRg~v~~l~~l~~ks------------------------------------~~Piv~~cndr~~p~s 474 (871)
T KOG1968|consen 439 GMFG--------EDRGGVSKLSSLCKKS------------------------------------SRPLVCTCNDRNLPKS 474 (871)
T ss_pred cccc--------hhhhhHHHHHHHHHhc------------------------------------cCCeEEEecCCCCccc
Confidence 6543 1223333333443311 0158999987766555
Q ss_pred cccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q psy15936 563 ALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMY 628 (665)
Q Consensus 563 aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~ 628 (665)
.-+. |-+..+.|+.|+.+.+..-+..++....+. .+-.++.+...+ ++||++.+..-.++
T Consensus 475 r~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 475 RALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred cchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 4444 544569999999999887777666543332 222366666665 56887776665554
No 300
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.29 E-value=0.0021 Score=67.80 Aligned_cols=204 Identities=21% Similarity=0.312 Sum_probs=109.1
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ 451 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~ 451 (665)
...|+.+.+.....+.+.+. ...|.++ ...+|+.|.+||||-.+|++.-... +.+|+.++|..+-.
T Consensus 200 ~~~F~~~v~~S~~mk~~v~q-------A~k~Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQ-------AQKLAML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred ccchHHHhhccHHHHHHHHH-------HHHhhcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 34556666655554444221 2222322 2358999999999999999975543 58899999986533
Q ss_pred h-----hhcc--chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccc
Q psy15936 452 K-----FIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCT 524 (665)
Q Consensus 452 ~-----~~g~--~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~ 524 (665)
. ..|. .......+|+.+. ..-+|+|||..+ ++..|..+..+++... ++
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEm-----------Sp~lQaKLLRFL~DGt-------FR---- 323 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEM-----------SPRLQAKLLRFLNDGT-------FR---- 323 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhc-----------CHHHHHHHHHHhcCCc-------ee----
Confidence 2 1111 1233355666642 346899999864 4466777777775321 10
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCC--CCCC-----ccccCCCCeeEEEEeCCCCHHHHH--------HHHH
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRI--DILD-----PALLRPGRIDRKIEFPPPNEEARL--------DILR 589 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~--~~Ld-----~aLlr~gRfd~~I~~~~P~~eer~--------~Il~ 589 (665)
| |.++.-...-++||+||..+ +... ..+.- |+. ++.+..|...+|. -.++
T Consensus 324 ----------R--VGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~ 388 (511)
T COG3283 324 ----------R--VGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQ 388 (511)
T ss_pred ----------e--cCCcceEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHH
Confidence 0 00000111223799999543 2222 22222 332 5566666655553 2233
Q ss_pred HhhccCCCC-CCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHH
Q psy15936 590 IHSRKMNLT-RGINLRKIAELMP---GASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 590 ~~l~~~~~~-~~vdl~~la~~t~---g~s~~dl~~l~~~A~~~A 629 (665)
.++...+.. +..+-+.+...+. .-+.+++.+.+-+|+...
T Consensus 389 q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 389 QFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 444444443 2333333322221 126688888888887543
No 301
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.0002 Score=64.75 Aligned_cols=31 Identities=32% Similarity=0.692 Sum_probs=27.3
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
++|.|||||||||+|+.+|+.++..++..+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999888766554
No 302
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.29 E-value=0.0015 Score=69.68 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=51.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechh----------------hhhhhhccchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSE----------------LVQKFIGEGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~d----------------l~~~~~g~~~~~~~~if~~a~ 469 (665)
|++++..+.++||||||||+||..++... +...++++... +....+...+..+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 67888889999999999999999987543 55555555421 111112222333333333445
Q ss_pred hcCCeEEEEcCccccccC
Q psy15936 470 EHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~~ 487 (665)
...++++++|-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999988763
No 303
>PRK07261 topology modulation protein; Provisional
Probab=97.27 E-value=0.00088 Score=65.04 Aligned_cols=32 Identities=28% Similarity=0.636 Sum_probs=27.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.++++|+||+||||+|+.++..++.+++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 47899999999999999999998887766543
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.26 E-value=0.0011 Score=64.17 Aligned_cols=92 Identities=28% Similarity=0.407 Sum_probs=58.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechhh--------hh--hhh---------------ccchHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL--------VQ--KFI---------------GEGSRMV 461 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~dl--------~~--~~~---------------g~~~~~~ 461 (665)
.+.++..+.|.||+|+|||+|++.++..+.+. -+.+++.+. .. .+. .......
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 35678889999999999999999999875321 112221110 00 000 1111222
Q ss_pred HHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 462 RELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 462 ~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+-.+..+....|.++++|| +..+.+......+.+++..+
T Consensus 104 rl~la~al~~~p~llllDE----------P~~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 104 RIAIARALLRDPPILILDE----------ATSALDPETEALILEALRAL 142 (171)
T ss_pred HHHHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHh
Confidence 3344555667899999999 55677777788888887765
No 305
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.25 E-value=0.014 Score=63.85 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHh--hCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccc
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 485 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~--l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~ 485 (665)
..+.++++.||+|||||+++.+++.. +-.- ..++...+...... ..+.. -...++++|||+..+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCc
Confidence 46788999999999999999998765 2110 22223333222111 11111 1345899999998753
No 306
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.0017 Score=61.82 Aligned_cols=91 Identities=31% Similarity=0.458 Sum_probs=57.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechhhh--------h--hhh--ccchHHHHHHHHHHHhcCCeE
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--------Q--KFI--GEGSRMVRELFVMAREHAPSI 475 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~dl~--------~--~~~--g~~~~~~~~if~~a~~~~p~V 475 (665)
+.++..+.|.||+|+|||+++++++..+.+. -+.++..... . .+. .......+-.+..+....|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 5677889999999999999999999876432 1223222110 0 010 111222334455555667899
Q ss_pred EEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 476 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 476 lliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+++||.. .+.|......+.+++..+
T Consensus 102 ~ilDEp~----------~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 102 LLLDEPT----------SGLDPASRERLLELLREL 126 (157)
T ss_pred EEEeCCC----------cCCCHHHHHHHHHHHHHH
Confidence 9999944 456667777777777654
No 307
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.22 E-value=0.0015 Score=71.25 Aligned_cols=101 Identities=27% Similarity=0.434 Sum_probs=61.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh------hc--------cchHHHHHHHHHHHhc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF------IG--------EGSRMVRELFVMAREH 471 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~------~g--------~~~~~~~~if~~a~~~ 471 (665)
|+.++..++++|+||+|||+++..+|..+ +..+++++..+-.... .+ .....+..++......
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 68888899999999999999999998754 3456666543211110 00 0112245566666667
Q ss_pred CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 472 APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 472 ~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
.|.+++||+|..+.....+...+....++..+..|.+.
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 89999999999876443222222223333444444443
No 308
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.22 E-value=0.0018 Score=69.03 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh----------------hhhhccchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV----------------QKFIGEGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~----------------~~~~g~~~~~~~~if~~a~ 469 (665)
|++++..++++||||||||+||..++... +...++++..... ...+...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67888899999999999999988876543 4555555432211 0112222333333333445
Q ss_pred hcCCeEEEEcCccccccC
Q psy15936 470 EHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~~ 487 (665)
...++++++|-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999988753
No 309
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.21 E-value=0.003 Score=61.50 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=58.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhhh-------h--hh----------------h--ccchH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELV-------Q--KF----------------I--GEGSR 459 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl~-------~--~~----------------~--g~~~~ 459 (665)
.+.++..+.+.||+|+|||+|++.++....+ --+.++..++. . .| + .....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 3567888999999999999999999986532 11222221110 0 00 0 11112
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
..+-.+..+....|.++++|| +..+.+......+.+++...
T Consensus 104 ~qrv~laral~~~p~~lllDE----------P~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDE----------PTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHH
Confidence 234445555667899999999 45567777788888888765
No 310
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00094 Score=66.23 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
+.++..+.++||+||||||+.|++..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 46778899999999999999999964
No 311
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.17 E-value=0.003 Score=61.24 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=59.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechhh--------hh--hhh---------------ccchHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL--------VQ--KFI---------------GEGSRMVR 462 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~dl--------~~--~~~---------------g~~~~~~~ 462 (665)
+.++..+.|.||+|+|||+|++.++..+.+. -+.++..++ .. .|. .......+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 4677889999999999999999999865321 112221110 00 000 11222344
Q ss_pred HHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 463 ELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 463 ~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
-.+..+....|.++++|| +..+.+...+..+.+++....
T Consensus 105 v~la~al~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 105 LGLARALYGNPRILVLDE----------PNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred HHHHHHHhcCCCEEEEEC----------CccccCHHHHHHHHHHHHHHH
Confidence 455566677899999999 556778888888888887653
No 312
>PHA02624 large T antigen; Provisional
Probab=97.17 E-value=0.00098 Score=75.54 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=45.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
|++..+.++|+||||||||+++.++++.++...+.++++.-... |...-.....+.++||+-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t 488 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVK 488 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecc
Confidence 66677799999999999999999999999777777876553222 222112233689999985
No 313
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.009 Score=63.26 Aligned_cols=123 Identities=11% Similarity=0.126 Sum_probs=78.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCC-------------ceEEEe--chhhhhhhhccchHHHHHHHHHHHh-----cC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTEC-------------TFIRVS--GSELVQKFIGEGSRMVRELFVMARE-----HA 472 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~-------------~lirv~--~~dl~~~~~g~~~~~~~~if~~a~~-----~~ 472 (665)
+...||+|+.|.||+.+|+.++..+-+ .+..++ +.. -....++.+.+.... ..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccCC
Confidence 446789999999999999999998722 122222 111 112334444444321 25
Q ss_pred CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEE
Q psy15936 473 PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552 (665)
Q Consensus 473 p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIa 552 (665)
..|+++|++|.+.. ..++ .|+..++.-+... .+|.
T Consensus 91 ~KvvII~~~e~m~~-----------~a~N---aLLK~LEEPp~~t-------------------------------~~il 125 (299)
T PRK07132 91 KKILIIKNIEKTSN-----------SLLN---ALLKTIEEPPKDT-------------------------------YFLL 125 (299)
T ss_pred ceEEEEecccccCH-----------HHHH---HHHHHhhCCCCCe-------------------------------EEEE
Confidence 67999999987532 2333 4444444432221 4677
Q ss_pred EeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHH
Q psy15936 553 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRI 590 (665)
Q Consensus 553 tTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~ 590 (665)
.|+.++.+-+.+++ |+ ..++|.+|+.++..+.+..
T Consensus 126 ~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 126 TTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 77778889999988 66 5799999999888776654
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.15 E-value=0.0028 Score=61.13 Aligned_cols=92 Identities=29% Similarity=0.399 Sum_probs=58.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-----------eEEEe-chh-----hhhhh----h--ccchHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----------FIRVS-GSE-----LVQKF----I--GEGSRMVRELF 465 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~-----------lirv~-~~d-----l~~~~----~--g~~~~~~~~if 465 (665)
.+.++..+.+.||+|+|||+|++.++..+.+. +..+. ... ..... . .......+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 35678889999999999999999999875311 10100 000 00000 0 11222334445
Q ss_pred HHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 466 VMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 466 ~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
..+....|.++++|| +..+.|......+.+++...
T Consensus 103 aral~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 103 ARLLLHKPKFVFLDE----------ATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred HHHHHcCCCEEEEEC----------CccccCHHHHHHHHHHHHHh
Confidence 556667899999999 45667777788787777654
No 315
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0027 Score=61.58 Aligned_cols=92 Identities=29% Similarity=0.398 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechh-------hh----------hhhh---------ccchHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-------LV----------QKFI---------GEGSRMV 461 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~d-------l~----------~~~~---------g~~~~~~ 461 (665)
+.++..+.|.||+|+|||+|++.++..+.+. -+.+++.+ +. ..+. .......
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 4677889999999999999999999865210 01111100 00 0001 1122223
Q ss_pred HHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 462 RELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 462 ~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
+-.+..+....|.++++|| +..+.|...+..+.+++..+.
T Consensus 103 rv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 103 RLALAQALLHDPELLILDE----------PTSGLDPESRREFWELLRELK 142 (173)
T ss_pred HHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH
Confidence 4445566667899999999 456778888888888887653
No 316
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.0028 Score=61.65 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=24.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+++.||+|.||||+.+.+....
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 35677889999999999999999998654
No 317
>PF14516 AAA_35: AAA-like domain
Probab=97.14 E-value=0.025 Score=60.90 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=91.5
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh-------------------h-------------hc
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK-------------------F-------------IG 455 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~-------------------~-------------~g 455 (665)
.++..+.+.||..+|||++...+.+.+ +...+.+++..+... + .+
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 357789999999999999999987765 455555554432110 0 01
Q ss_pred cchHHHHHHHHHH---HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 456 EGSRMVRELFVMA---REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 456 ~~~~~~~~if~~a---~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
........|+.. ....|-|++|||||++.... ....-+..+++...........
T Consensus 109 -~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~---------~~~~dF~~~LR~~~~~~~~~~~------------- 165 (331)
T PF14516_consen 109 -SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP---------QIADDFFGLLRSWYEQRKNNPI------------- 165 (331)
T ss_pred -ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc---------chHHHHHHHHHHHHHhcccCcc-------------
Confidence 111112222221 12357799999999876421 2222234444433221110000
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
-.....+++.+.........-.+|--+...|.++..+.++...+++.+-.. ..... ++.+-..+.|
T Consensus 166 -----------~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgG 231 (331)
T PF14516_consen 166 -----------WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGG 231 (331)
T ss_pred -----------cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCC
Confidence 001112333332222221111344345557889999999999888876433 22222 7777778877
Q ss_pred CCHHHHHHHHHH
Q psy15936 613 ASGAEVKGVCTE 624 (665)
Q Consensus 613 ~s~~dl~~l~~~ 624 (665)
. |.=+..+|..
T Consensus 232 h-P~Lv~~~~~~ 242 (331)
T PF14516_consen 232 H-PYLVQKACYL 242 (331)
T ss_pred C-HHHHHHHHHH
Confidence 4 4444444433
No 318
>KOG0479|consensus
Probab=97.12 E-value=0.01 Score=66.28 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=89.4
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHH--HhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh----
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELF--DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF---- 453 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f--~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~---- 453 (665)
.+-|.+.+++.+.-++.- -.+.- ....+...=++|+.|.|.+.||-|.+.+.+....++-..++..--..+
T Consensus 302 SI~GH~~vKkAillLLlG---GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG---GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHHhc---cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 467888888887444322 11110 000111123699999999999999999988776665554433211000
Q ss_pred ---hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 454 ---IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 454 ---~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
...+++.+ +.-.... ....|++|||+|++... -+-.+.+.+++ -++.+..||.++
T Consensus 379 TtD~eTGERRL-EAGAMVL-ADRGVVCIDEFDKMsDi-----------DRvAIHEVMEQ---------qtVTIaKAGIHa 436 (818)
T KOG0479|consen 379 TTDQETGERRL-EAGAMVL-ADRGVVCIDEFDKMSDI-----------DRVAIHEVMEQ---------QTVTIAKAGIHA 436 (818)
T ss_pred eeccccchhhh-hcCceEE-ccCceEEehhcccccch-----------hHHHHHHHHhc---------ceEEeEeccchh
Confidence 00111110 1000000 13469999999986321 12335566655 234556677766
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeEEEEe
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDRKIEF 576 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~~I~~ 576 (665)
.-.-|- -|+||+|+.+ .|+..|++ |||..+.+
T Consensus 437 sLNARC------------SVlAAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 437 SLNARC------------SVLAAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred hhccce------------eeeeecCccccccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 554443 4899998754 36789999 99985444
No 319
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.0012 Score=67.61 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC
Q psy15936 462 RELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 513 (665)
Q Consensus 462 ~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~ 513 (665)
|-++..|....|.++++|| +..+.|...+..+.+++..+..-
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC
Confidence 4455666677899999999 67788889999999999887553
No 320
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.09 E-value=0.0028 Score=63.13 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.+..++.++|+||+|+||||+++.++.
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 345567889999999999999999985
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.09 E-value=0.0033 Score=61.41 Aligned_cols=92 Identities=30% Similarity=0.386 Sum_probs=58.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhh---------------------------hhhhh--ccc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSEL---------------------------VQKFI--GEG 457 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl---------------------------~~~~~--g~~ 457 (665)
.+.++..+.|.||+|+|||+|++.++..+.+ --+.+++.+. ....+ ...
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3567888999999999999999999986532 1122222111 00000 111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 458 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 458 ~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
....+-.+..+....|.++++|| +..+.+......+.+++..+
T Consensus 101 G~~qrl~laral~~~p~llllDE----------P~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDE----------PTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHH
Confidence 12233344455567899999999 45667777777787877765
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.08 E-value=0.0056 Score=62.41 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
|++++..+++.||||||||++|..++..+ +...+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 57788899999999999999986665533 44455544
No 323
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.08 E-value=0.00057 Score=65.72 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=30.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+++..++|+|+||||||++|+.+|..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 45678999999999999999999999998887543
No 324
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.06 E-value=0.0028 Score=65.18 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++++..+-|.||+|||||||.++++..+.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45677888999999999999999998653
No 325
>KOG0481|consensus
Probab=97.06 E-value=0.0052 Score=67.51 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
.+.++|+++++-+-..|-.+-....|.+|+.+|++-..-
T Consensus 603 ITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 603 ITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred eeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 456899999999888888888889999999999986643
No 326
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.05 E-value=0.0074 Score=58.77 Aligned_cols=30 Identities=37% Similarity=0.363 Sum_probs=23.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
++++||||||||+++..++... |...+.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999999887643 45555554
No 327
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.03 E-value=0.0035 Score=63.41 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=32.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEech
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGS 447 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~ 447 (665)
|+.++..++++||||+|||++|..++... +...++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 77888889999999999999999998743 5666666655
No 328
>PHA00729 NTP-binding motif containing protein
Probab=97.02 E-value=0.0018 Score=65.42 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=23.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 329
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.005 Score=58.38 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
...++++|+||+||||++.-+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45689999999999999999998773
No 330
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.96 E-value=0.0018 Score=73.70 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=26.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++++..+++.||+|||||+|.|++|...
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999999999753
No 331
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.93 E-value=0.0078 Score=60.49 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=30.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
|+.++..++++|+||+|||++|..+|... +.+.++++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67888889999999999999999998765 445555543
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.92 E-value=0.0022 Score=59.56 Aligned_cols=34 Identities=35% Similarity=0.720 Sum_probs=26.9
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
++++||||+||||+|+.++..++. ..++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHHHH
Confidence 689999999999999999999983 4444444443
No 333
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.90 E-value=0.0031 Score=65.74 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.++++.||+|+||||++++++..+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999998753
No 334
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.89 E-value=0.0062 Score=60.28 Aligned_cols=93 Identities=27% Similarity=0.366 Sum_probs=58.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh--CCc--eEEEechh------------------h------hhh--h-----
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVSGSE------------------L------VQK--F----- 453 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l--~~~--lirv~~~d------------------l------~~~--~----- 453 (665)
.+.++..+.|.||+|+|||+|++.++..+ .+. -+.++..+ + ... +
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 35678889999999999999999999876 321 01111100 0 000 0
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
........+-.+..+....|.++++|| +..+.+...+..+.+++....
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDE----------PTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH
Confidence 011122233344555567899999999 456677788888888887653
No 335
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.89 E-value=0.0047 Score=60.39 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechh-------------------------hh------hh--hh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-------------------------LV------QK--FI 454 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~d-------------------------l~------~~--~~ 454 (665)
+.++..+.|.||+|+|||||++.++..+.+. -+.+++.+ +. .. +.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 5677889999999999999999999765311 11111100 00 00 00
Q ss_pred --ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 455 --GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 455 --g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
.......+-.+..+....|.++++|| +..+.|...++.+.+++..+.
T Consensus 103 ~~LS~G~~qrl~la~al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~ 151 (182)
T cd03215 103 SLLSGGNQQKVVLARWLARDPRVLILDE----------PTRGVDVGAKAEIYRLIRELA 151 (182)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHH
Confidence 11111122334455567899999999 556778888888888887653
No 336
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0064 Score=59.25 Aligned_cols=92 Identities=30% Similarity=0.419 Sum_probs=58.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechh----------hhh----------hhh-----------cc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE----------LVQ----------KFI-----------GE 456 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~d----------l~~----------~~~-----------g~ 456 (665)
+.++..+.|.||+|+|||||++.++..+.+. -+.++..+ +.. .+. ..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 5677889999999999999999999764321 11111100 000 000 11
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 457 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 457 ~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
.....+-.+..+....|.++++|| +..+.|...+..+.+++..+.
T Consensus 103 ~G~~qr~~la~al~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~ 147 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDE----------PTSALDPITRREVRALLKSLQ 147 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH
Confidence 122334445566667899999999 556778888888888887653
No 337
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.051 Score=59.99 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=43.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
...++ .++++||.+||||++++.+...+-...+.++..|........ .. ....+..+.......+|+|||+.+
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d-~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LD-LLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HH-HHHHHHHhhccCCceEEEecccCc
Confidence 33444 899999999999999988888775545555554443221111 11 111122211113468999999963
No 338
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.82 E-value=0.0081 Score=67.37 Aligned_cols=79 Identities=28% Similarity=0.408 Sum_probs=53.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh------hc--------cchHHHHHHHHHHHhc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF------IG--------EGSRMVRELFVMAREH 471 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~------~g--------~~~~~~~~if~~a~~~ 471 (665)
|+.++..+++.|+||+|||+++..++..+ +...++++..+....+ .+ ..+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 78888999999999999999999997754 3456666543221110 00 0112234555566667
Q ss_pred CCeEEEEcCccccccC
Q psy15936 472 APSIIFMDEIDSIGSS 487 (665)
Q Consensus 472 ~p~VlliDEID~l~~~ 487 (665)
.|++++||.|..+...
T Consensus 170 ~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 170 NPQACVIDSIQTLYSP 185 (454)
T ss_pred CCcEEEEecchhhccc
Confidence 8999999999987543
No 339
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0065 Score=65.59 Aligned_cols=121 Identities=25% Similarity=0.351 Sum_probs=82.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC--CceEEEechhhhhh--------------hhccchHHHHHHHHHHHhcC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE--CTFIRVSGSELVQK--------------FIGEGSRMVRELFVMAREHA 472 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~--~~lirv~~~dl~~~--------------~~g~~~~~~~~if~~a~~~~ 472 (665)
|+-++.-+|+-|.||.|||||.-.++..+- ...+++.+.+-... .....+..+..|.+......
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 567888899999999999999988887663 36777766443221 11223445678888888899
Q ss_pred CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 473 PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 473 p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
|+++++|.|..+.....++..+.-..++..-.+|.+......-.--+.+.+|..|..
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~I 225 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAI 225 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccc
Confidence 999999999999887766677766667766666665443322222233444444433
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.77 E-value=0.0026 Score=68.85 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=46.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC----ceEEEec-hhhhh---------hhhccchHHHHHHHHHHHhcCCeEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSG-SELVQ---------KFIGEGSRMVRELFVMAREHAPSIIF 477 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~----~lirv~~-~dl~~---------~~~g~~~~~~~~if~~a~~~~p~Vll 477 (665)
+...++++||+|+||||+++++...+.. .++.+.- .++.. .-.+.........+..+.+..|++++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 4567899999999999999999887642 2333211 11110 00122222356667777788999999
Q ss_pred EcCcc
Q psy15936 478 MDEID 482 (665)
Q Consensus 478 iDEID 482 (665)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99985
No 341
>PRK06762 hypothetical protein; Provisional
Probab=96.75 E-value=0.0052 Score=58.95 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
.-++++|+||+||||+|+.++..++..+..++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4678999999999999999999997666666665544
No 342
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.74 E-value=0.0014 Score=63.65 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=32.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
++.++|.|+||+||||+|+.++..++..+++++..++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 45689999999999999999999998888777665543
No 343
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.013 Score=57.91 Aligned_cols=92 Identities=27% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEechhh-----------------h------hh--h-----hc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGSEL-----------------V------QK--F-----IG 455 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~dl-----------------~------~~--~-----~g 455 (665)
+.++..+.|.||+|+|||||++.++... ..--+.++..++ . .. + ..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L 109 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL 109 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence 5677889999999999999999999642 111111111100 0 00 0 01
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 456 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 456 ~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
......+-.+..+....|.++++|| +..+.+...+..+.+++..+.
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDE----------P~~~LD~~~~~~l~~~l~~~~ 155 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDE----------PTSGLDSQAAYNIVRFLKKLA 155 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeC----------CCcCCCHHHHHHHHHHHHHHH
Confidence 1112223334455566789999999 456677788888888877653
No 344
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0093 Score=59.20 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=23.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+......-|.||+||||||+.+++-+.
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 3556677789999999999999998653
No 345
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0057 Score=62.49 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=26.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+.++..++++||+|+||||+++.++..+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 356778899999999999999999987664
No 346
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0022 Score=68.94 Aligned_cols=27 Identities=44% Similarity=0.594 Sum_probs=23.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+.++..+-|.||+||||||+.+.+|..
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456667889999999999999999964
No 347
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.71 E-value=0.002 Score=72.77 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=44.2
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-CceEEEe
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-CTFIRVS 445 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-~~lirv~ 445 (665)
|+++.|++++++++.+.+... ...++ .+...++|.||||+|||+||+.++..+. .+++.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~A------a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHA------AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHH------HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 557889999999998777331 12222 3445788999999999999999998764 3555543
No 348
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.69 E-value=0.0077 Score=63.95 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
..+++|+.|||+-|+|||.|.-...+.+...
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 3577999999999999999999998887543
No 349
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.68 E-value=0.0029 Score=62.93 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=43.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCc----eEEEech-hhhh---------hhhccchHHHHHHHHHHHhcCCeEEEEcC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECT----FIRVSGS-ELVQ---------KFIGEGSRMVRELFVMAREHAPSIIFMDE 480 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~----lirv~~~-dl~~---------~~~g~~~~~~~~if~~a~~~~p~VlliDE 480 (665)
-+++.||+|+||||++.+++..+... ++.+... ++.. .-.+.........+..+....|+++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 47899999999999999998877522 2222111 1100 00122223345566677778899999999
Q ss_pred cc
Q psy15936 481 ID 482 (665)
Q Consensus 481 ID 482 (665)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 74
No 350
>PRK09354 recA recombinase A; Provisional
Probab=96.68 E-value=0.0077 Score=64.83 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=50.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh---hCCceEEEechhh----------------hhhhhccchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TECTFIRVSGSEL----------------VQKFIGEGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~---l~~~lirv~~~dl----------------~~~~~g~~~~~~~~if~~a~ 469 (665)
|++++..+.++||+|||||+||..++.. .+...++++...- ...-+...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6788888999999999999999987643 3555555543221 00012222333333333344
Q ss_pred hcCCeEEEEcCcccccc
Q psy15936 470 EHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~ 486 (665)
...++++++|-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999998875
No 351
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.68 E-value=0.0048 Score=64.07 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=52.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC----ceEEEe---------chh-hhhhhhccchHHHHHHHHHHHhcCCeEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVS---------GSE-LVQKFIGEGSRMVRELFVMAREHAPSII 476 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~----~lirv~---------~~d-l~~~~~g~~~~~~~~if~~a~~~~p~Vl 476 (665)
.+..-||++||+||||||..-++.+.++. +++.+. ... +...-.|.+.......++.|.+..|+|+
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 45556889999999999999999988763 233321 111 1223456666677788888889999999
Q ss_pred EEcCcc
Q psy15936 477 FMDEID 482 (665)
Q Consensus 477 liDEID 482 (665)
++-|+-
T Consensus 203 lvGEmR 208 (353)
T COG2805 203 LVGEMR 208 (353)
T ss_pred EEeccc
Confidence 999975
No 352
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.67 E-value=0.01 Score=59.06 Aligned_cols=92 Identities=27% Similarity=0.385 Sum_probs=57.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh--C--CceEEEechhh-------------------------------hhhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT--E--CTFIRVSGSEL-------------------------------VQKF 453 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l--~--~~lirv~~~dl-------------------------------~~~~ 453 (665)
.+.++..+.|.||+|+|||+|++.++... . .--+.++..++ ...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 35678899999999999999999999863 1 11111111100 0000
Q ss_pred h--ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 454 I--GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 454 ~--g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
. .......+-.+..+....|.++++|| +..+.+......+.+++..+
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDE----------PDSGLDIDALRLVAEVINKL 150 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHH
Confidence 0 11112233344555567899999999 55677778888888877765
No 353
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.66 E-value=0.011 Score=58.86 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.++..++|+||+|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 4456799999999999999999983
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.65 E-value=0.005 Score=64.14 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=55.9
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC---ceEEEe-chhhhh--
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVS-GSELVQ-- 451 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~---~lirv~-~~dl~~-- 451 (665)
+++++-.....+.+++++.. +...+++.||+|+||||+++++...+.. .++.+. ..++..
T Consensus 59 l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 59 LEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred HHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 34555445555555554432 3456899999999999999999877643 233331 111110
Q ss_pred ----hhhccchHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 452 ----KFIGEGSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 452 ----~~~g~~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
.............+..+.++.|++++++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1111111235667777888999999999986
No 355
>PRK03839 putative kinase; Provisional
Probab=96.64 E-value=0.0016 Score=63.44 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=27.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++|.|+||+||||+++.+|+.++.+++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4789999999999999999999998887654
No 356
>PRK13947 shikimate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=62.25 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=28.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
+++|.|+||||||++++.+|+.++.+|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999877553
No 357
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.63 E-value=0.015 Score=58.17 Aligned_cols=28 Identities=39% Similarity=0.600 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999864
No 358
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.61 E-value=0.011 Score=54.09 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=39.0
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..+.|+.-+.+.+..++.-.+..+ .-..|-.+-|+|+||||||.+++.+|+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 357889988888888876533222 12334455689999999999999999975
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=96.60 E-value=0.035 Score=56.74 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
|+.++..+++.|+||+|||+++..++... |.+.++++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 78888999999999999999999887644 55555444
No 360
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0088 Score=58.53 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=26.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++.++..+.+.||+|||||||...+|....
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 567888999999999999999999997653
No 361
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.59 E-value=0.0022 Score=62.11 Aligned_cols=59 Identities=24% Similarity=0.456 Sum_probs=37.4
Q ss_pred cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---eEEEechhh
Q psy15936 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSGSEL 449 (665)
Q Consensus 381 i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv~~~dl 449 (665)
..|-+++.+++...+.. .....+..++|+|++|+|||++++.+...+... ++...+...
T Consensus 2 fvgR~~e~~~l~~~l~~----------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA----------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG----------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH----------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 45788888888776631 123456789999999999999999998776433 667666654
No 362
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.58 E-value=0.019 Score=57.01 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=21.3
Q ss_pred CCCC-ceEEEeCCCCChHHHHHHHHH
Q psy15936 410 IAQP-KGVLLYGPPGTGKTLLARAVA 434 (665)
Q Consensus 410 ~~~~-~~vLL~GppGtGKT~LA~aia 434 (665)
+.++ +.++|+||+|+|||++.+.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444 469999999999999999998
No 363
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.58 E-value=0.014 Score=58.86 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC
Q psy15936 461 VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 513 (665)
Q Consensus 461 ~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~ 513 (665)
.|..+..|....|.++|+|| +.+|.++-....+.+|+..+...
T Consensus 152 KRvaLARAialdPell~~DE----------PtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 152 KRVALARAIALDPELLFLDE----------PTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred HHHHHHHHHhcCCCEEEecC----------CCCCCCcchHHHHHHHHHHHHHh
Confidence 34556666677899999999 67788888888899998877554
No 364
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.56 E-value=0.0022 Score=60.45 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+++|+|+||+|||++|+.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998877554
No 365
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.55 E-value=0.018 Score=67.91 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++++..+-+.|++|||||||+|.+....
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677889999999999999999998754
No 366
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.54 E-value=0.027 Score=55.68 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999999864
No 367
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.54 E-value=0.16 Score=55.78 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=31.8
Q ss_pred EEEEEeCCCC---CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 549 KVIMATNRID---ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 549 ~VIatTn~~~---~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
-||+.|+... .|..+| |.|.-..|.+...+.+.-+..+..++...
T Consensus 185 HVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 185 HVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 3666665443 355566 34666789999999988888888888653
No 368
>PHA02774 E1; Provisional
Probab=96.52 E-value=0.015 Score=65.87 Aligned_cols=38 Identities=29% Similarity=0.643 Sum_probs=30.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE-Eec
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR-VSG 446 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir-v~~ 446 (665)
|.+....++|+||||||||++|.++++.++...+. ++.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 44445689999999999999999999999755543 553
No 369
>PRK00625 shikimate kinase; Provisional
Probab=96.51 E-value=0.0024 Score=62.11 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=28.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++|+|.||+|||++++.+|+.++.+++..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999998887765
No 370
>PRK14532 adenylate kinase; Provisional
Probab=96.51 E-value=0.0023 Score=62.73 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=27.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+++.||||+||||+|+.+|..++..++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 4889999999999999999999987766543
No 371
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.02 Score=57.06 Aligned_cols=30 Identities=37% Similarity=0.555 Sum_probs=26.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+.++..+.|.||+|+|||||++.++....
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 356788899999999999999999998653
No 372
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.49 E-value=0.0024 Score=62.29 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=26.8
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
++++||||+||||+|+.+|..++...+. ..++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is--~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS--AGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CChHH
Confidence 6899999999999999999999865544 44443
No 373
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.49 E-value=0.0065 Score=67.46 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE-echh---hhhh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV-SGSE---LVQK 452 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv-~~~d---l~~~ 452 (665)
.++.+|......+.+++++.. +..-+|++||+|+||||...+....++.+...+ ...| +...
T Consensus 236 ~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~ 301 (500)
T COG2804 236 DLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLP 301 (500)
T ss_pred CHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecC
Confidence 455677667777777776643 445678899999999999999999886443321 1111 1000
Q ss_pred h-----hc-cchHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 453 F-----IG-EGSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 453 ~-----~g-~~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
- +. ...-.....++...++.|+|+++.||-
T Consensus 302 gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 302 GINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 0 00 011113455566677899999999986
No 374
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.012 Score=62.88 Aligned_cols=28 Identities=39% Similarity=0.573 Sum_probs=24.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+..+..+.|.||+||||||+.+.+|...
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567789999999999999999999643
No 375
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.48 E-value=0.0038 Score=63.05 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=20.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHH
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~ 435 (665)
+..+|+||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 56699999999999999999973
No 376
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.47 E-value=0.012 Score=59.81 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=23.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+..+.-+.|.||+||||||+.+.+-+..
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 4566778899999999999999987543
No 377
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.47 E-value=0.019 Score=57.83 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999998754
No 378
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.45 E-value=0.01 Score=60.25 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
|+.++.-+.|+||||||||++|..++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788889999999999999999999754
No 379
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.43 E-value=0.017 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+...+++||+|+|||+++++++-.+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999986543
No 380
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.027 Score=57.17 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++.+-.++||+|+|||||++.++.+.
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 46788899999999999999999998643
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.39 E-value=0.0036 Score=65.21 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=46.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCc---eEEEe-chhhhhh------hhc-cchHHHHHHHHHHHhcCCeEEEEcC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVS-GSELVQK------FIG-EGSRMVRELFVMAREHAPSIIFMDE 480 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv~-~~dl~~~------~~g-~~~~~~~~if~~a~~~~p~VlliDE 480 (665)
....+++.||+|+||||+++++...++.. ++.+. ..++... +.. ........++..+.+..|++++++|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE 205 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE 205 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc
Confidence 46789999999999999999999887544 22222 1111110 111 1333467788888889999999999
Q ss_pred cc
Q psy15936 481 ID 482 (665)
Q Consensus 481 ID 482 (665)
+.
T Consensus 206 iR 207 (270)
T PF00437_consen 206 IR 207 (270)
T ss_dssp E-
T ss_pred cC
Confidence 87
No 382
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.39 E-value=0.0035 Score=62.04 Aligned_cols=29 Identities=10% Similarity=0.128 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCCCccccCCCCeeEEEEeCCC
Q psy15936 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPP 579 (665)
Q Consensus 549 ~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P 579 (665)
-|+.+|..+..+|+.+++ +.+..+.+..+
T Consensus 118 diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 118 DIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 489999999999999987 88887777654
No 383
>PRK14531 adenylate kinase; Provisional
Probab=96.38 E-value=0.0034 Score=61.51 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=27.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.++++||||+||||+++.+|..++...+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 589999999999999999999998877664
No 384
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.37 E-value=0.025 Score=56.29 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677889999999999999999999764
No 385
>PRK13949 shikimate kinase; Provisional
Probab=96.37 E-value=0.0031 Score=61.11 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=28.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++|+|+||+|||++++.+|..++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998887765
No 386
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.36 E-value=0.013 Score=62.06 Aligned_cols=38 Identities=37% Similarity=0.554 Sum_probs=30.2
Q ss_pred HHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC
Q psy15936 466 VMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 513 (665)
Q Consensus 466 ~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~ 513 (665)
..+..+.|.++++|| +.++.|+.....+.++++.+..-
T Consensus 148 a~aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 148 ALALLHDPELLILDE----------PTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred HHHHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHHhC
Confidence 344456799999999 67889999999999988877543
No 387
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.35 E-value=0.014 Score=59.46 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=30.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
|++++..++++|+||+|||+++..++... +...++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 78889999999999999999999997542 555555543
No 388
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.35 E-value=0.034 Score=55.14 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999998754
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.028 Score=56.08 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999754
No 390
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.019 Score=57.82 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4677889999999999999999999764
No 391
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.33 E-value=0.02 Score=62.24 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+...+++||||+|||+|++.+++...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 566789999999999999999998663
No 392
>PRK14530 adenylate kinase; Provisional
Probab=96.33 E-value=0.0037 Score=62.90 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=27.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
..++|.||||+||||+|+.+|..++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3689999999999999999999999777654
No 393
>KOG1051|consensus
Probab=96.33 E-value=0.038 Score=65.78 Aligned_cols=159 Identities=27% Similarity=0.300 Sum_probs=98.3
Q ss_pred cCCC-hHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceEEEechhh
Q psy15936 381 VGGL-DNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFIRVSGSEL 449 (665)
Q Consensus 381 i~G~-~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~lirv~~~dl 449 (665)
+.|. ++.++++.+.+.. ...++-+|.|.||+|||.++..+|... +..++.++...+
T Consensus 188 vigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l 254 (898)
T KOG1051|consen 188 VIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSL 254 (898)
T ss_pred ccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhc
Confidence 4344 7888888776654 233567899999999999999999865 233444443322
Q ss_pred --hhhhhccchHHHHHHHHHHH-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccc
Q psy15936 450 --VQKFIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEA 526 (665)
Q Consensus 450 --~~~~~g~~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eA 526 (665)
..++-++.+..+..+...+. ....-|+|+||++.+.+.... .+.-+.. .++..+-...+ +
T Consensus 255 ~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~----nlLkp~L~rg~---l------- 317 (898)
T KOG1051|consen 255 VAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAA----NLLKPLLARGG---L------- 317 (898)
T ss_pred ccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHH----HhhHHHHhcCC---e-------
Confidence 22355666777777777766 445678999999987654422 1111111 22222211111 1
Q ss_pred hhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 527 GMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 527 g~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
.+|+||..-+ .-+|++-+ ||+ .+.++.|+.+....|+......
T Consensus 318 ----------------------~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 318 ----------------------WCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ----------------------EEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 4777775322 24889988 886 6778889988877777655444
No 394
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.32 E-value=0.0098 Score=59.50 Aligned_cols=28 Identities=43% Similarity=0.551 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999764
No 395
>PRK06217 hypothetical protein; Validated
Probab=96.32 E-value=0.0035 Score=61.39 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=27.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.|+|.|+||+||||+|+.++..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876655
No 396
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.31 E-value=0.018 Score=57.25 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677889999999999999999999754
No 397
>KOG3347|consensus
Probab=96.31 E-value=0.0031 Score=58.89 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=30.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
..++|++|-||||||+++..+|..++..++.++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 3579999999999999999999999998877653
No 398
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.30 E-value=0.012 Score=60.70 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
+..+..++|+||+|+|||++++.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 456778999999999999999999988754
No 399
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.30 E-value=0.0035 Score=59.01 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
++++|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 400
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.30 E-value=0.0099 Score=61.21 Aligned_cols=78 Identities=27% Similarity=0.476 Sum_probs=52.0
Q ss_pred HhhCCCCCceEEEeCCCCChHHHHHHHHHH------hhCCceEEEechhhhhhh-----h----ccc---hHHHHHHHHH
Q psy15936 406 DALGIAQPKGVLLYGPPGTGKTLLARAVAH------HTECTFIRVSGSELVQKF-----I----GEG---SRMVRELFVM 467 (665)
Q Consensus 406 ~~~g~~~~~~vLL~GppGtGKT~LA~aia~------~l~~~lirv~~~dl~~~~-----~----g~~---~~~~~~if~~ 467 (665)
++..+.....+||.||+|.||+.||+-+.. .++.+|+.++|..+.... . |.. ...+..++.
T Consensus 201 erva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllr- 279 (531)
T COG4650 201 ERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLR- 279 (531)
T ss_pred HHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhc-
Confidence 344556667899999999999999998854 578899999998764321 0 110 011111222
Q ss_pred HHhcCCeEEEEcCcccccc
Q psy15936 468 AREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 468 a~~~~p~VlliDEID~l~~ 486 (665)
.....++|+|||..++.
T Consensus 280 --sadggmlfldeigelga 296 (531)
T COG4650 280 --SADGGMLFLDEIGELGA 296 (531)
T ss_pred --cCCCceEehHhhhhcCc
Confidence 23467999999987643
No 401
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0086 Score=65.10 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||.+.+|...
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4577788999999999999999999754
No 402
>PRK13948 shikimate kinase; Provisional
Probab=96.29 E-value=0.0047 Score=60.65 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++..++|.|.+|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998766
No 403
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.29 E-value=0.024 Score=57.78 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35678889999999999999999999754
No 404
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.28 E-value=0.016 Score=58.39 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
|+.++.-+.|+||||+|||++|..+|..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 7888889999999999999999999865
No 405
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.27 E-value=0.019 Score=60.90 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677889999999999999999999765
No 406
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.27 E-value=0.0048 Score=62.86 Aligned_cols=34 Identities=26% Similarity=0.585 Sum_probs=29.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+..++|.||||+||||+|+.+|..++.+++.++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3455999999999999999999999998777655
No 407
>PRK10436 hypothetical protein; Provisional
Probab=96.26 E-value=0.012 Score=65.98 Aligned_cols=92 Identities=18% Similarity=0.297 Sum_probs=57.7
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---eEEEe-chhhhhh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVS-GSELVQK 452 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv~-~~dl~~~ 452 (665)
.++++|-.....+.+++++.. +...+|++||+|+||||++.++...++.. ++.+. ..++...
T Consensus 196 ~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~ 261 (462)
T PRK10436 196 DLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLA 261 (462)
T ss_pred CHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCC
Confidence 445666556666666665532 45578999999999999998887776432 33321 1111110
Q ss_pred h-----hc-cchHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 453 F-----IG-EGSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 453 ~-----~g-~~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
. .. .........++.+.++.|+++++.||-
T Consensus 262 gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 262 GINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 0 01 112235667777888999999999986
No 408
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.26 E-value=0.022 Score=55.28 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=27.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.+++.|+||+|||++|..++..++.+++++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 48999999999999999999998876666543
No 409
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.26 E-value=0.0096 Score=65.18 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=25.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|||||||.+.+|...
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34677889999999999999999999754
No 410
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.26 E-value=0.0072 Score=59.42 Aligned_cols=73 Identities=26% Similarity=0.395 Sum_probs=47.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEech-hhhhh------h-------hccchHHHHHHHHHHHhcCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGS-ELVQK------F-------IGEGSRMVRELFVMAREHAP 473 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~-dl~~~------~-------~g~~~~~~~~if~~a~~~~p 473 (665)
+..+..+++.||+|+||||++++++..+.. ..+.+... ++... + .+........++..+.+..|
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p 101 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP 101 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC
Confidence 346778999999999999999999987642 12222111 11000 0 01112335667777778889
Q ss_pred eEEEEcCcc
Q psy15936 474 SIIFMDEID 482 (665)
Q Consensus 474 ~VlliDEID 482 (665)
++++++|+-
T Consensus 102 d~i~igEir 110 (186)
T cd01130 102 DRIIVGEVR 110 (186)
T ss_pred CEEEEEccC
Confidence 999999986
No 411
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.25 E-value=0.025 Score=56.38 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 5677889999999999999999999754
No 412
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.025 Score=58.52 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999764
No 413
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.23 E-value=0.0036 Score=59.85 Aligned_cols=28 Identities=39% Similarity=0.679 Sum_probs=24.2
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
++++||+||||||+|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4689999999999999999999866543
No 414
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.23 E-value=0.012 Score=56.51 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
+.++..+-|.||+|+|||+|..-+|.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhc
Confidence 56788899999999999999999984
No 415
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.23 E-value=0.0041 Score=57.92 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=27.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+.+.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999987776
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.22 E-value=0.083 Score=58.89 Aligned_cols=27 Identities=33% Similarity=0.504 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+|..++++|++|+||||++..+|..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999999999876
No 417
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.01 Score=59.45 Aligned_cols=69 Identities=26% Similarity=0.435 Sum_probs=41.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCC--------ceEEEe-chhhhhhh--------------hccchHHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTEC--------TFIRVS-GSELVQKF--------------IGEGSRMVRELFVMARE 470 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~--------~lirv~-~~dl~~~~--------------~g~~~~~~~~if~~a~~ 470 (665)
.+.|+.|||||||||+.+-+|+.+.. .+..++ ++++..-. ..+..+ -.-+....+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk-~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK-AEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchH-HHHHHHHHHh
Confidence 45899999999999999999986532 222222 12221111 111111 1233344566
Q ss_pred cCCeEEEEcCccc
Q psy15936 471 HAPSIIFMDEIDS 483 (665)
Q Consensus 471 ~~p~VlliDEID~ 483 (665)
+.|.|+++|||..
T Consensus 217 m~PEViIvDEIGt 229 (308)
T COG3854 217 MSPEVIIVDEIGT 229 (308)
T ss_pred cCCcEEEEecccc
Confidence 8999999999874
No 418
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.025 Score=58.31 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567789999999999999999999865
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.21 E-value=0.046 Score=53.67 Aligned_cols=19 Identities=37% Similarity=0.579 Sum_probs=18.0
Q ss_pred EEEeCCCCChHHHHHHHHH
Q psy15936 416 VLLYGPPGTGKTLLARAVA 434 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia 434 (665)
++|+||+|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 420
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.20 E-value=0.058 Score=55.18 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
..+-.+.+.|++|||||++++.+...+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 3455788999999999999999987764
No 421
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.20 E-value=0.0077 Score=68.24 Aligned_cols=174 Identities=25% Similarity=0.323 Sum_probs=94.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh--CCceEEEechhhhhh-----hhccchH--------HHHHHHHHHHhcCCeEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT--ECTFIRVSGSELVQK-----FIGEGSR--------MVRELFVMAREHAPSII 476 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l--~~~lirv~~~dl~~~-----~~g~~~~--------~~~~if~~a~~~~p~Vl 476 (665)
..-.+++.|.+||||-.+|+++-... ..+|+.++|..+-.. +.|.... ..+..++. .....+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~---A~gGtl 411 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQ---ADGGTL 411 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhcccccccee---cCCCcc
Confidence 44579999999999999999996544 578999998765322 2222111 11122222 123478
Q ss_pred EEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 477 FMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 477 liDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
|+|||..+.- ..|..+...+.+-.- ..+.. ++ --.+||+||
T Consensus 412 FldeIgd~p~-----------~~Qs~LLrVl~e~~v~p~g~~~-~~-------------------------vdirvi~at 454 (606)
T COG3284 412 FLDEIGDMPL-----------ALQSRLLRVLQEGVVTPLGGTR-IK-------------------------VDIRVIAAT 454 (606)
T ss_pred HHHHhhhchH-----------HHHHHHHHHHhhCceeccCCcc-ee-------------------------EEEEEEecc
Confidence 9999986532 345555555543211 11111 10 011799999
Q ss_pred CCCCCCCccccCCCCeeE-------EEEeCCCCHHHH---HHHHHHhhccCC-CCCCCCH----HHHHHHCCCCCHHHHH
Q psy15936 555 NRIDILDPALLRPGRIDR-------KIEFPPPNEEAR---LDILRIHSRKMN-LTRGINL----RKIAELMPGASGAEVK 619 (665)
Q Consensus 555 n~~~~Ld~aLlr~gRfd~-------~I~~~~P~~eer---~~Il~~~l~~~~-~~~~vdl----~~la~~t~g~s~~dl~ 619 (665)
++.- ..+.+-|||-. ...+..|...+| ...+..++.... ....++- ..++....| +-+++.
T Consensus 455 h~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~ 530 (606)
T COG3284 455 HRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELD 530 (606)
T ss_pred CcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHH
Confidence 8641 23334455533 334444444444 444444443322 1122332 333444555 678888
Q ss_pred HHHHHHHHHH
Q psy15936 620 GVCTEAGMYA 629 (665)
Q Consensus 620 ~l~~~A~~~A 629 (665)
++++.++..+
T Consensus 531 ~v~~~~~~l~ 540 (606)
T COG3284 531 NVIERLAALS 540 (606)
T ss_pred HHHHHHHHcC
Confidence 9998887554
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.20 E-value=0.033 Score=56.09 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~ 435 (665)
+.++|+||+|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999983
No 423
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.19 E-value=0.0043 Score=60.90 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=25.7
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
|+++||||+|||++|+.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999988766554
No 424
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.19 E-value=0.023 Score=58.63 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999764
No 425
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.027 Score=56.37 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=25.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677889999999999999999999754
No 426
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.014 Score=60.06 Aligned_cols=92 Identities=30% Similarity=0.335 Sum_probs=56.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCce--EEEechh-------------------------hhhhhhccchHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTF--IRVSGSE-------------------------LVQKFIGEGSRMVR 462 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l--irv~~~d-------------------------l~~~~~g~~~~~~~ 462 (665)
+..+..+-|.|.+||||||+++.+.....+.- +...+.+ ....|+.+-...-+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 56778899999999999999999998664321 2222111 11223333222223
Q ss_pred H--HHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 463 E--LFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 463 ~--if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
+ .+..|....|.+++.||.-+ ..+-.++..+..|+..+.
T Consensus 116 QRi~IARALal~P~liV~DEpvS----------aLDvSiqaqIlnLL~dlq 156 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVS----------ALDVSVQAQILNLLKDLQ 156 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchh----------hcchhHHHHHHHHHHHHH
Confidence 3 33444556799999999653 344556666667766554
No 427
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.17 E-value=0.01 Score=64.72 Aligned_cols=70 Identities=27% Similarity=0.351 Sum_probs=46.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC-----CceEEEech-hhh-----------hhhhccchHHHHHHHHHHHhcCCeE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRVSGS-ELV-----------QKFIGEGSRMVRELFVMAREHAPSI 475 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~-----~~lirv~~~-dl~-----------~~~~g~~~~~~~~if~~a~~~~p~V 475 (665)
...++++||+|+||||+++++++.+. ..++.+.-+ ++. ..-.+.........+..+.+..|++
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 34689999999999999999988762 234443211 111 0011222234556777888899999
Q ss_pred EEEcCcc
Q psy15936 476 IFMDEID 482 (665)
Q Consensus 476 lliDEID 482 (665)
+++.|+-
T Consensus 229 I~vGEiR 235 (372)
T TIGR02525 229 IGVGEIR 235 (372)
T ss_pred EeeCCCC
Confidence 9999986
No 428
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.17 E-value=0.014 Score=57.96 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=33.8
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh-CCceEEEechhhhhhhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVSGSELVQKFI 454 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l-~~~lirv~~~dl~~~~~ 454 (665)
..|..+++.|+||+|||+++..+...+ +..++.++..++....+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p 57 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHP 57 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGST
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhcc
Confidence 467789999999999999999999988 78888888887765544
No 429
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.17 E-value=0.031 Score=64.78 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=26.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.||+|+|||||++.++...+
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 356888999999999999999999998664
No 430
>CHL00181 cbbX CbbX; Provisional
Probab=96.16 E-value=0.006 Score=64.29 Aligned_cols=103 Identities=9% Similarity=0.068 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccce-e---e---eccCCcceEEEec----------cCCeee
Q psy15936 264 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGE-V---V---KPMDKKKVLVKVH----------PEGKFV 326 (665)
Q Consensus 264 ~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~-~---v---~p~~~kt~l~ka~----------~~~~f~ 326 (665)
-...+..++.|++..|+++++.+.++. .....+..|...+. + + |||||||.++++- ..+.|+
T Consensus 17 ~~~~l~~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~ 95 (287)
T CHL00181 17 VLDILDEELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLL 95 (287)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceE
Confidence 345566788999999999999877644 34556666665543 2 2 9999999998773 223466
Q ss_pred eecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCC
Q psy15936 327 VDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPD 375 (665)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~ 375 (665)
....+++...++|..+.. ...++......++|+|+++.+..
T Consensus 96 ~v~~~~l~~~~~g~~~~~--------~~~~l~~a~ggVLfIDE~~~l~~ 136 (287)
T CHL00181 96 TVTRDDLVGQYIGHTAPK--------TKEVLKKAMGGVLFIDEAYYLYK 136 (287)
T ss_pred EecHHHHHHHHhccchHH--------HHHHHHHccCCEEEEEccchhcc
Confidence 666666666666654321 22233333457999999998854
No 431
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.16 E-value=0.021 Score=57.90 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999754
No 432
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.027 Score=56.59 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++...
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678889999999999999999999754
No 433
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.15 E-value=0.0062 Score=59.19 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=30.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
...++|.|++|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988877654
No 434
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.15 E-value=0.05 Score=54.93 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
|++++..+++.|+||+|||++|..++... +.+.++++.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 77888899999999999999999887542 555555543
No 435
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.15 E-value=0.019 Score=57.65 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=25.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 35677889999999999999999999764
No 436
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.14 E-value=0.036 Score=55.93 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999764
No 437
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.14 E-value=0.023 Score=57.42 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=57.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEechhhhh----h----------------------hh----
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGSELVQ----K----------------------FI---- 454 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~dl~~----~----------------------~~---- 454 (665)
|++++..+|+.||||+|||+++..++... +...+.+...+-.. . +.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 78899999999999999999999876432 66666654321100 0 00
Q ss_pred ---ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 455 ---GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 455 ---g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
.........+........+++++||.+..+... .........+..+...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~------~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY------DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS------SSGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc------CCHHHHHHHHHHHHHHHH
Confidence 111223344445555567799999999987221 122334455555555543
No 438
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.14 E-value=0.0049 Score=65.34 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=47.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC-----CceEEEe-chhhhh-------hhhccchHHHHHHHHHHHhcCCeEEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRVS-GSELVQ-------KFIGEGSRMVRELFVMAREHAPSIIFM 478 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~-----~~lirv~-~~dl~~-------~~~g~~~~~~~~if~~a~~~~p~Vlli 478 (665)
...+++++||+|+||||++++++..+. ..++.+. ..++.. ............++..+.+..|+.+++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 456899999999999999999998762 2222221 111110 001112225677888888999999999
Q ss_pred cCcc
Q psy15936 479 DEID 482 (665)
Q Consensus 479 DEID 482 (665)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9986
No 439
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.025 Score=57.33 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+-|.|++|||||||+++++...
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 5678889999999999999999999643
No 440
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.12 E-value=0.009 Score=64.26 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=48.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEE-echhhhh-h----------h--hccchHHHHHHHHHHHhcCCe
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRV-SGSELVQ-K----------F--IGEGSRMVRELFVMAREHAPS 474 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv-~~~dl~~-~----------~--~g~~~~~~~~if~~a~~~~p~ 474 (665)
....+++++|++|+||||+++++...+... ++.+ +..++.. . . .+...-....++..+.+..|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 456789999999999999999999877532 2221 1111110 0 0 011122356788888899999
Q ss_pred EEEEcCcc
Q psy15936 475 IIFMDEID 482 (665)
Q Consensus 475 VlliDEID 482 (665)
.+++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999986
No 441
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.11 E-value=0.085 Score=56.17 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
..+..+.|+|+=|+|||++.+.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 567789999999999999999998877544
No 442
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.11 E-value=0.03 Score=66.63 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=26.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.||+|+|||||++.++....
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356788999999999999999999997653
No 443
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.11 E-value=0.18 Score=52.65 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=99.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHH-hcCCeEEEEcCccccccCCcC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIE 490 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~ 490 (665)
+..+.||.|.+|+||+++++..|...+..++.+....-. -...-...++.++..+- .+.|.+++++|-+-.
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~------ 101 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIV------ 101 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSS------
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHHHHHHHHHHhccCCCeEEEecCcccc------
Confidence 557899999999999999999999999888887654311 01112233455555443 456788888885421
Q ss_pred CCCCCChHHHHHHHHHHHhhc--CCcccCccccccccchhhhhh-------hhhcccchhhhhccccEEEEEeCCCCCC-
Q psy15936 491 SGSGGDSEVQRTMLELLNQLD--GFEATKNIKGVCTEAGMYALR-------ERRVHVTQEDFEMAVAKVIMATNRIDIL- 560 (665)
Q Consensus 491 ~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~vc~eAg~~air-------~~r~~v~~~df~~a~~~VIatTn~~~~L- 560 (665)
+......++.|+...+ ++-..+.+..++.+....+.. +.....+.+-.....-.|++.+...+.+
T Consensus 102 -----~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r 176 (268)
T PF12780_consen 102 -----DESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFR 176 (268)
T ss_dssp -----SCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCC
T ss_pred -----hHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHH
Confidence 1233334444443211 111111122222211111111 1111111111222222344444333333
Q ss_pred -----CccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--hc
Q psy15936 561 -----DPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR--ER 633 (665)
Q Consensus 561 -----d~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~--~~ 633 (665)
-|+|.+ ++ .+.-+.+.+.+....+...+++.....+...-+.++.. ...+..-+.+....-.. ++
T Consensus 177 ~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~-----~~~iH~sv~~~s~~y~~~~~r 248 (268)
T PF12780_consen 177 DRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDIELLSEELKKSLAEI-----MVFIHQSVEEISRKYLQELRR 248 (268)
T ss_dssp HHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHHHTSS--HHHHHHHH-----HHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHH-----HHHHhccchHhHHHHHHHcCC
Confidence 256665 33 35566778889999999988887553222112222222 12333333333222222 24
Q ss_pred CCCCCHHHHHHHHH
Q psy15936 634 RVHVTQEDFEMAVA 647 (665)
Q Consensus 634 ~~~It~~d~~~Al~ 647 (665)
...+|+.-|.+-++
T Consensus 249 ~~yvTP~syL~~i~ 262 (268)
T PF12780_consen 249 YNYVTPKSYLEFIK 262 (268)
T ss_dssp -----HHHHHHHHH
T ss_pred cceECcHHHHHHHh
Confidence 56899988877654
No 444
>PRK14527 adenylate kinase; Provisional
Probab=96.10 E-value=0.005 Score=60.68 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=28.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+.+..++++||||+||||+|+.++..++...+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4567899999999999999999999988665544
No 445
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0082 Score=58.72 Aligned_cols=33 Identities=30% Similarity=0.677 Sum_probs=26.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
.++|.||||+||||+|+.+++.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 488999999999999999999954 444444443
No 446
>KOG2383|consensus
Probab=96.09 E-value=0.035 Score=59.75 Aligned_cols=29 Identities=38% Similarity=0.599 Sum_probs=25.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.+|+|++|||.-|||||+|.-.+-+.+.+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~ 140 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPP 140 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCc
Confidence 45899999999999999999888876654
No 447
>PRK06547 hypothetical protein; Provisional
Probab=96.09 E-value=0.0059 Score=59.37 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=29.3
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++..|++.|++|||||++|+.++..++..++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667888999999999999999999887766543
No 448
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.08 E-value=0.023 Score=58.17 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=28.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh---hCCceEEE
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TECTFIRV 444 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~---l~~~lirv 444 (665)
|++++..++++||||+|||++|..++.. -+.+.+++
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyv 55 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYV 55 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 7889999999999999999999887653 24444444
No 449
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.07 E-value=0.033 Score=59.32 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577789999999999999999999765
No 450
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.06 Score=52.54 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.+.||+|+|||+|.|.+|..+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccC
Confidence 46778899999999999999999997653
No 451
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.0053 Score=58.23 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=27.0
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+.+.|||||||||+|+-+|+.+|.+++.-+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG 32 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAG 32 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeecc
Confidence 568899999999999999999999987744
No 452
>PLN02200 adenylate kinase family protein
Probab=96.06 E-value=0.0067 Score=62.02 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=30.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
..+..++++|+|||||||+|+.+|..++... ++..++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 3456789999999999999999999998654 55555543
No 453
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.06 E-value=0.056 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
-.+++||.|+|||++..|+.-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 577999999999999999976654
No 454
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.05 E-value=0.016 Score=56.25 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+..+..+-+.||+|+|||||...+|...
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 45677789999999999999999999754
No 455
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.0052 Score=59.31 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+++|+|++|+||||+.+.+|+.|+.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999997755
No 456
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.04 E-value=0.0066 Score=58.53 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
..++|+|++|||||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35889999999999999999999999887654
No 457
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.04 E-value=0.054 Score=53.79 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.|++|+|||+|.+.++..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678889999999999999999999764
No 458
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.024 Score=57.66 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35678889999999999999999999754
No 459
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.03 E-value=0.033 Score=56.41 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++...
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678889999999999999999999754
No 460
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.02 E-value=0.035 Score=60.45 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||.+.++...
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5678889999999999999999999755
No 461
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.02 E-value=0.18 Score=61.49 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=84.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC-CceEEEechhh-----hhh----h----hc--cc-------------hHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE-CTFIRVSGSEL-----VQK----F----IG--EG-------------SRMVR 462 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~-~~lirv~~~dl-----~~~----~----~g--~~-------------~~~~~ 462 (665)
..+-++++||+|.|||+++...+...+ ..++.++..+- ... + ++ +. .....
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 455789999999999999999887665 33444443321 000 0 00 00 01122
Q ss_pred HHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchh
Q psy15936 463 ELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQE 541 (665)
Q Consensus 463 ~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~ 541 (665)
.++..... ..|.++++||++.+. ++.....+..+++..... +
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~~~~-----~---------------------- 153 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQPEN-----L---------------------- 153 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhCCCC-----e----------------------
Confidence 23332222 568899999998642 223444555666543211 1
Q ss_pred hhhccccEEEEEeCCCCCCCc-cccCCCCeeEEEEeC----CCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHH
Q psy15936 542 DFEMAVAKVIMATNRIDILDP-ALLRPGRIDRKIEFP----PPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGA 616 (665)
Q Consensus 542 df~~a~~~VIatTn~~~~Ld~-aLlr~gRfd~~I~~~----~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~ 616 (665)
.+|.++.....++- .+.-.+. .+++. +.+.++-.+++...+.. .+ ...+...+...|.|. +.
T Consensus 154 -------~lv~~sR~~~~~~~~~l~~~~~---~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gw-p~ 220 (903)
T PRK04841 154 -------TLVVLSRNLPPLGIANLRVRDQ---LLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGW-AT 220 (903)
T ss_pred -------EEEEEeCCCCCCchHhHHhcCc---ceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCCh-HH
Confidence 34455643212221 1211112 34454 77889988888765542 22 223467788888884 44
Q ss_pred HHHH
Q psy15936 617 EVKG 620 (665)
Q Consensus 617 dl~~ 620 (665)
-+..
T Consensus 221 ~l~l 224 (903)
T PRK04841 221 ALQL 224 (903)
T ss_pred HHHH
Confidence 4443
No 462
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.02 E-value=0.082 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++ .+.|+||+|+|||+|+++++..+
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 344 67899999999999999997543
No 463
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.028 Score=60.96 Aligned_cols=29 Identities=45% Similarity=0.512 Sum_probs=25.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|||||||++.++...
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 35677889999999999999999999754
No 464
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.01 E-value=0.014 Score=63.11 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+-|.||+|+|||||++.++...
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~ 55 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677789999999999999999998754
No 465
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.01 E-value=0.037 Score=64.37 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.|++|+|||||++.++....
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 357888999999999999999999998664
No 466
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.00 E-value=0.039 Score=57.19 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677889999999999999999999765
No 467
>PRK04296 thymidine kinase; Provisional
Probab=96.00 E-value=0.028 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.-.+++||+|+|||+++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999999999999998765
No 468
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.025 Score=59.02 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+..+.-+-|.||+|+||||+.+.+|...
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 4567778899999999999999999643
No 469
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.99 E-value=0.032 Score=60.61 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||.+.+|...
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4577789999999999999999999764
No 470
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.99 E-value=0.033 Score=56.77 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~ 445 (665)
|+.++.-++|.|+||+|||+++..++... +.+++.++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 78899999999999999999999987643 66665554
No 471
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.98 E-value=0.05 Score=54.09 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++...
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 35688889999999999999999999865
No 472
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.97 E-value=0.0056 Score=59.69 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=25.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
..+++.||||+||||+|+.++..++...+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 357899999999999999999998765443
No 473
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.97 E-value=0.015 Score=71.42 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh------hhhhhccchH---HHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL------VQKFIGEGSR---MVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl------~~~~~g~~~~---~~~~if~~a~~~~p~VlliDEID 482 (665)
....+|+-||+.+|||++...+|+..+..|+|++-.+. .+.|+..+.. ....++-.|.++. -.+++||++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccc
Confidence 44569999999999999999999999999999986543 2222222111 1233444444443 478999988
Q ss_pred ccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhh-cccchhhhhccccEEEEEeCCCCC--
Q psy15936 483 SIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR-VHVTQEDFEMAVAKVIMATNRIDI-- 559 (665)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r-~~v~~~df~~a~~~VIatTn~~~~-- 559 (665)
. +..++..+++.|++.-...- +++.. +.+.+.+| ++.||-|+|..
T Consensus 966 L-----------ApTDVLEaLNRLLDDNRelf----------------IPETqevV~PHp~F-----~lFATQNppg~Yg 1013 (4600)
T COG5271 966 L-----------APTDVLEALNRLLDDNRELF----------------IPETQEVVVPHPNF-----RLFATQNPPGGYG 1013 (4600)
T ss_pred c-----------CcHHHHHHHHHhhcccccee----------------cCCcceeeccCCCe-----eEEeecCCCcccc
Confidence 3 22355555565554322110 11111 11223333 44555577753
Q ss_pred ----CCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 560 ----LDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 560 ----Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
+..|++. || ..++|..-..++...|++..+
T Consensus 1014 GRK~LSrAFRN--RF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1014 GRKGLSRAFRN--RF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred chHHHHHHHHh--hh-HhhhcccCcHHHHHHHHhccC
Confidence 5678887 88 578888878888888887554
No 474
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.028 Score=61.58 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||.+.+|...
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4677889999999999999999999754
No 475
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.94 E-value=0.044 Score=57.59 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 56778899999999999999999998763
No 476
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.93 E-value=0.0064 Score=60.94 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=26.5
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
++++||||+||||+|+.+|..++...+..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~g 31 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTG 31 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehh
Confidence 789999999999999999999987776643
No 477
>PRK13946 shikimate kinase; Provisional
Probab=95.93 E-value=0.0067 Score=59.52 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=30.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.+..|+|.|++|||||++++.+|..++.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 34679999999999999999999999999877663
No 478
>PRK14528 adenylate kinase; Provisional
Probab=95.92 E-value=0.0075 Score=59.35 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=27.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+++.||||+|||++|+.++..++.+.+..+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~ 33 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTG 33 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCC
Confidence 5899999999999999999999987776543
No 479
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.92 E-value=0.019 Score=64.99 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=56.5
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC---ceEEEec-hhhhhh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSG-SELVQK 452 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~---~lirv~~-~dl~~~ 452 (665)
.++++|-..+..+.++.++.. +..-++++||+|+||||++.++...++. .++.+.- .++...
T Consensus 220 ~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~ 285 (486)
T TIGR02533 220 DLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIE 285 (486)
T ss_pred CHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecC
Confidence 344565556666666665532 3345789999999999999988877642 2333321 111100
Q ss_pred h-----hcc-chHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 453 F-----IGE-GSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 453 ~-----~g~-~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
. ..+ ........+..+.++.|+++++.|+-
T Consensus 286 ~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 286 GIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 011 11234566677778999999999986
No 480
>PRK13764 ATPase; Provisional
Probab=95.92 E-value=0.01 Score=68.19 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=42.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCc---eEEEe-chhh-----hhhhhccchHHHHHHHHHHHhcCCeEEEEcCcc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVS-GSEL-----VQKFIGEGSRMVRELFVMAREHAPSIIFMDEID 482 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv~-~~dl-----~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID 482 (665)
...++|++||||+||||++.+++..+... +..+. ..++ ...+. ............+.+..|+++++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 45789999999999999999999877522 21221 1111 11111 000111223334456789999999986
No 481
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.91 E-value=0.038 Score=58.94 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
|+..+..+.++||||+|||++|..+|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 678888899999999999999988773
No 482
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.91 E-value=0.04 Score=63.99 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++++..+.+.||+|+|||||++.++...
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35788999999999999999999998765
No 483
>PRK02496 adk adenylate kinase; Provisional
Probab=95.91 E-value=0.0067 Score=59.31 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=26.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+++.||||+|||++|+.++..++.+.+..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~ 33 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTG 33 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhH
Confidence 4889999999999999999999987766543
No 484
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.90 E-value=0.047 Score=64.91 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.||+|+|||||++.++....
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 356788999999999999999999987553
No 485
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.90 E-value=0.055 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.++..++|.||+|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999986
No 486
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.90 E-value=0.04 Score=65.28 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=26.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.||+|+|||||++.++....
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356888999999999999999999997653
No 487
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.89 E-value=0.036 Score=56.61 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4677889999999999999999999754
No 488
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.89 E-value=0.0098 Score=63.41 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=32.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
..++..++|+|++|||||++++.+|..++.+|+..+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 567789999999999999999999999999998543
No 489
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.88 E-value=0.026 Score=65.29 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.|++|+|||||++.++....
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 356888999999999999999999987653
No 490
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.049 Score=56.72 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678889999999999999999999754
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.87 E-value=0.013 Score=62.41 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=49.0
Q ss_pred hCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEe-chhhhhh------h------hccchHHHHHHHHHHHhcC
Q psy15936 408 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVS-GSELVQK------F------IGEGSRMVRELFVMAREHA 472 (665)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~-~~dl~~~------~------~g~~~~~~~~if~~a~~~~ 472 (665)
+-+..+.++++.||+|+||||++++++..+... .+.+. ..++... + .+...-....++..+.+..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 345677899999999999999999999876422 22221 0011000 0 0111223566777788899
Q ss_pred CeEEEEcCcc
Q psy15936 473 PSIIFMDEID 482 (665)
Q Consensus 473 p~VlliDEID 482 (665)
|+++++||+-
T Consensus 219 pd~ii~gE~r 228 (308)
T TIGR02788 219 PDRIILGELR 228 (308)
T ss_pred CCeEEEeccC
Confidence 9999999976
No 492
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.031 Score=61.08 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4577789999999999999999999754
No 493
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.83 E-value=0.062 Score=61.57 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=26.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.||+|+|||||++.++...+
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357888999999999999999999987654
No 494
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.83 E-value=0.044 Score=59.78 Aligned_cols=28 Identities=39% Similarity=0.481 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||.+.+|...
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567789999999999999999999754
No 495
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.038 Score=59.84 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35677889999999999999999999765
No 496
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.82 E-value=0.012 Score=63.61 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=48.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEe-chhhhhh--------h----hccchHHHHHHHHHHHhcCCe
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVS-GSELVQK--------F----IGEGSRMVRELFVMAREHAPS 474 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~-~~dl~~~--------~----~g~~~~~~~~if~~a~~~~p~ 474 (665)
.....++++.||+|+||||++++++..++.. ++.+. ..++... + .+...-....++..+.+..|+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 4567889999999999999999999877532 22211 1111100 0 011223356788888889999
Q ss_pred EEEEcCcc
Q psy15936 475 IIFMDEID 482 (665)
Q Consensus 475 VlliDEID 482 (665)
.+++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999986
No 497
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.052 Score=56.95 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35677889999999999999999999764
No 498
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.81 E-value=0.014 Score=62.31 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC-----CceEEEe-chhhhh------hhhccchHHHHHHHHHHHhcCCeEEEEc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRVS-GSELVQ------KFIGEGSRMVRELFVMAREHAPSIIFMD 479 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~-----~~lirv~-~~dl~~------~~~g~~~~~~~~if~~a~~~~p~VlliD 479 (665)
...+++++|++|+||||++++++..+. ..++.+. ..++.. .+.....-....++..+.+..|+.+++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 356899999999999999999998762 1222221 112111 0111122335677888888999999999
Q ss_pred Ccc
Q psy15936 480 EID 482 (665)
Q Consensus 480 EID 482 (665)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 985
No 499
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.79 E-value=0.06 Score=62.56 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+.++..+.+.|++|+|||||++.++....
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 357888999999999999999999987653
No 500
>PRK04040 adenylate kinase; Provisional
Probab=95.79 E-value=0.0092 Score=58.91 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=25.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh--CCceE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT--ECTFI 442 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l--~~~li 442 (665)
+..++++|+|||||||+++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999999 54443
Done!