Query psy15936
Match_columns 665
No_of_seqs 531 out of 3881
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 16:53:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 7.2E-68 2.4E-72 570.8 40.2 390 124-665 16-405 (405)
2 4b4t_I 26S protease regulatory 100.0 1.2E-62 4.1E-67 531.2 38.9 360 147-658 73-432 (437)
3 4b4t_L 26S protease subunit RP 100.0 8.1E-61 2.8E-65 523.6 41.4 362 141-654 66-427 (437)
4 4b4t_K 26S protease regulatory 100.0 2.7E-60 9.1E-65 518.8 42.3 368 133-652 49-417 (428)
5 4b4t_M 26S protease regulatory 100.0 1E-60 3.5E-65 522.4 36.1 374 134-660 33-432 (434)
6 4b4t_H 26S protease regulatory 100.0 1.5E-57 5E-62 496.0 34.4 330 174-655 93-456 (467)
7 3cf2_A TER ATPase, transitiona 100.0 3.4E-53 1.2E-57 492.8 3.0 363 269-665 203-759 (806)
8 3cf2_A TER ATPase, transitiona 100.0 3.2E-37 1.1E-41 358.8 20.1 252 370-653 195-463 (806)
9 3cf0_A Transitional endoplasmi 100.0 3.8E-35 1.3E-39 308.6 23.1 266 370-664 6-296 (301)
10 1ypw_A Transitional endoplasmi 100.0 5.3E-39 1.8E-43 379.1 -11.4 263 373-664 471-758 (806)
11 2x8a_A Nuclear valosin-contain 100.0 3.3E-34 1.1E-38 297.6 19.4 254 372-657 3-272 (274)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.8E-33 9.7E-38 297.2 23.2 259 371-664 4-314 (322)
13 3h4m_A Proteasome-activating n 100.0 1.1E-32 3.8E-37 286.4 26.8 256 369-653 7-262 (285)
14 3hu3_A Transitional endoplasmi 100.0 2.5E-32 8.4E-37 304.8 30.5 250 373-654 198-464 (489)
15 2ce7_A Cell division protein F 100.0 1.5E-32 5.1E-37 304.5 27.2 250 373-652 10-259 (476)
16 1lv7_A FTSH; alpha/beta domain 100.0 6.3E-32 2.2E-36 277.0 27.7 252 371-652 4-255 (257)
17 3eie_A Vacuolar protein sortin 100.0 1.1E-32 3.9E-37 292.5 20.8 260 370-664 9-313 (322)
18 2qp9_X Vacuolar protein sortin 100.0 4.7E-32 1.6E-36 291.7 22.1 260 370-664 42-346 (355)
19 2zan_A Vacuolar protein sortin 100.0 5.2E-31 1.8E-35 291.7 20.5 261 370-665 125-437 (444)
20 2dhr_A FTSH; AAA+ protein, hex 100.0 1E-30 3.5E-35 291.3 22.6 250 374-653 26-275 (499)
21 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.3E-31 2.5E-35 268.7 18.9 253 374-656 1-256 (262)
22 1ixz_A ATP-dependent metallopr 100.0 1.3E-29 4.5E-34 259.2 26.7 247 370-646 7-253 (254)
23 1iy2_A ATP-dependent metallopr 100.0 2.5E-28 8.6E-33 253.4 27.0 246 371-646 32-277 (278)
24 3d8b_A Fidgetin-like protein 1 100.0 6.4E-29 2.2E-33 267.4 22.9 263 369-664 74-349 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 3.9E-29 1.3E-33 261.3 20.3 263 370-664 12-287 (297)
26 2r62_A Cell division protease 100.0 1.4E-30 4.8E-35 268.3 1.7 255 372-655 4-259 (268)
27 3vfd_A Spastin; ATPase, microt 100.0 8.3E-28 2.9E-32 261.6 23.0 267 365-664 101-380 (389)
28 1ypw_A Transitional endoplasmi 99.9 1.2E-24 4.1E-29 256.7 23.8 249 372-652 197-462 (806)
29 4b4t_J 26S protease regulatory 99.9 5.7E-27 2E-31 252.5 -6.8 338 134-551 33-390 (405)
30 2wg5_A General control protein 99.9 1.9E-22 6.6E-27 178.5 11.6 101 149-249 9-109 (109)
31 3t15_A Ribulose bisphosphate c 99.9 5.9E-22 2E-26 207.3 12.5 187 409-620 32-222 (293)
32 4b4t_K 26S protease regulatory 99.9 3.8E-24 1.3E-28 233.5 -6.0 340 133-552 56-416 (428)
33 4b4t_I 26S protease regulatory 99.9 4.6E-24 1.6E-28 230.6 -5.9 234 272-552 184-425 (437)
34 4b4t_L 26S protease subunit RP 99.8 3.1E-23 1.1E-27 226.7 -4.8 230 275-550 186-422 (437)
35 4b4t_H 26S protease regulatory 99.8 7.6E-24 2.6E-28 230.9 -10.0 238 272-555 211-455 (467)
36 4b4t_M 26S protease regulatory 99.8 2.1E-23 7.3E-28 227.8 -8.1 233 272-551 183-423 (434)
37 3syl_A Protein CBBX; photosynt 99.8 5E-18 1.7E-22 177.8 17.9 224 378-643 30-280 (309)
38 3h43_A Proteasome-activating n 99.8 1E-18 3.4E-23 147.2 10.0 76 161-236 2-77 (85)
39 3uk6_A RUVB-like 2; hexameric 99.7 2.1E-17 7.3E-22 177.2 18.3 228 376-650 41-331 (368)
40 2c9o_A RUVB-like 1; hexameric 99.7 8.3E-18 2.8E-22 186.5 14.6 263 374-651 32-439 (456)
41 3pfi_A Holliday junction ATP-d 99.7 1.3E-16 4.4E-21 169.4 22.6 235 370-650 20-255 (338)
42 1hqc_A RUVB; extended AAA-ATPa 99.7 2.1E-16 7.1E-21 166.4 18.0 230 372-650 5-239 (324)
43 1ofh_A ATP-dependent HSL prote 99.7 3.3E-16 1.1E-20 163.4 15.2 247 379-650 15-300 (310)
44 2chg_A Replication factor C sm 99.7 1.7E-15 5.8E-20 148.9 17.6 206 369-647 7-224 (226)
45 2v1u_A Cell division control p 99.7 2.7E-15 9.3E-20 160.9 20.7 223 378-651 18-278 (387)
46 3m6a_A ATP-dependent protease 99.7 7.5E-17 2.6E-21 182.5 8.6 237 375-649 77-341 (543)
47 3m9b_A Proteasome-associated A 99.6 2.6E-15 8.8E-20 148.4 16.3 105 133-239 54-158 (251)
48 1g41_A Heat shock protein HSLU 99.6 7.9E-17 2.7E-21 176.3 5.5 170 379-589 15-189 (444)
49 2z4s_A Chromosomal replication 99.6 2.8E-15 9.7E-20 165.4 17.5 192 413-651 130-334 (440)
50 1d2n_A N-ethylmaleimide-sensit 99.6 1.8E-15 6.2E-20 155.8 14.1 226 379-650 33-265 (272)
51 3hws_A ATP-dependent CLP prote 99.6 2.9E-15 1E-19 160.9 15.4 255 380-646 16-346 (363)
52 3pvs_A Replication-associated 99.6 3.6E-15 1.2E-19 164.7 14.7 210 370-650 17-245 (447)
53 2r44_A Uncharacterized protein 99.6 9.5E-15 3.2E-19 154.7 16.4 229 370-652 18-300 (331)
54 1g8p_A Magnesium-chelatase 38 99.6 2.7E-14 9.1E-19 151.7 19.4 230 373-653 18-326 (350)
55 3u61_B DNA polymerase accessor 99.6 7.7E-15 2.6E-19 154.8 14.8 205 369-646 16-234 (324)
56 1l8q_A Chromosomal replication 99.6 2E-14 6.8E-19 151.8 17.5 193 412-651 36-242 (324)
57 1njg_A DNA polymerase III subu 99.6 3.5E-14 1.2E-18 141.0 17.5 206 370-646 14-248 (250)
58 3bos_A Putative DNA replicatio 99.6 3.9E-14 1.3E-18 141.6 17.6 204 376-647 25-241 (242)
59 1sxj_D Activator 1 41 kDa subu 99.6 2.2E-14 7.5E-19 152.5 16.2 212 368-647 26-261 (353)
60 2qby_B CDC6 homolog 3, cell di 99.6 5.2E-14 1.8E-18 151.3 18.8 212 379-651 20-272 (384)
61 1in4_A RUVB, holliday junction 99.6 1.7E-13 5.8E-18 145.7 22.5 235 370-650 16-251 (334)
62 1sxj_A Activator 1 95 kDa subu 99.6 2.6E-14 8.9E-19 160.8 16.4 226 368-648 28-273 (516)
63 1jbk_A CLPB protein; beta barr 99.5 1.8E-14 6.2E-19 138.1 10.9 162 372-588 15-194 (195)
64 2qby_A CDC6 homolog 1, cell di 99.5 2.4E-13 8.3E-18 145.4 20.4 222 377-651 18-274 (386)
65 1um8_A ATP-dependent CLP prote 99.5 6.2E-14 2.1E-18 151.3 15.8 251 380-648 22-364 (376)
66 1r6b_X CLPA protein; AAA+, N-t 99.5 1E-13 3.5E-18 163.1 18.8 224 373-650 180-434 (758)
67 4fcw_A Chaperone protein CLPB; 99.5 1.4E-13 4.7E-18 143.9 15.6 209 379-631 17-280 (311)
68 3pxg_A Negative regulator of g 99.5 8.8E-14 3E-18 154.6 14.7 209 371-649 172-406 (468)
69 1fnn_A CDC6P, cell division co 99.5 2.6E-13 9.1E-18 145.8 18.0 220 378-652 16-277 (389)
70 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 3.5E-14 1.2E-18 158.4 10.6 217 380-651 23-287 (500)
71 1r6b_X CLPA protein; AAA+, N-t 99.5 1.2E-13 4.2E-18 162.3 16.0 205 379-630 458-716 (758)
72 3pxi_A Negative regulator of g 99.5 2.2E-13 7.6E-18 160.2 17.6 205 379-631 491-726 (758)
73 2chq_A Replication factor C sm 99.5 1.9E-13 6.6E-18 142.8 15.3 208 369-645 7-222 (319)
74 1iqp_A RFCS; clamp loader, ext 99.5 3.8E-13 1.3E-17 141.1 17.3 194 369-626 15-216 (327)
75 1sxj_B Activator 1 37 kDa subu 99.5 3.4E-13 1.2E-17 141.1 16.6 206 369-647 11-229 (323)
76 3te6_A Regulatory protein SIR3 99.5 7.2E-14 2.4E-18 147.0 10.9 214 381-650 22-316 (318)
77 3pxi_A Negative regulator of g 99.4 4.8E-13 1.7E-17 157.3 16.0 192 371-632 172-388 (758)
78 1jr3_A DNA polymerase III subu 99.4 6.6E-13 2.3E-17 142.1 15.7 205 370-645 7-240 (373)
79 1qvr_A CLPB protein; coiled co 99.4 3.9E-13 1.3E-17 160.0 14.5 207 371-632 162-395 (854)
80 2p65_A Hypothetical protein PF 99.4 4.9E-13 1.7E-17 127.8 10.8 155 372-580 15-187 (187)
81 1sxj_E Activator 1 40 kDa subu 99.4 9.4E-13 3.2E-17 140.2 12.9 196 368-629 3-244 (354)
82 3f9v_A Minichromosome maintena 99.4 5.9E-13 2E-17 151.9 10.0 233 379-652 295-590 (595)
83 1qvr_A CLPB protein; coiled co 99.4 1.3E-12 4.6E-17 155.5 11.7 209 378-632 557-822 (854)
84 1sxj_C Activator 1 40 kDa subu 99.3 5E-12 1.7E-16 134.4 14.1 209 368-645 14-235 (340)
85 2x8a_A Nuclear valosin-contain 99.3 1.4E-14 4.8E-19 149.8 -6.8 238 267-551 7-265 (274)
86 3kw6_A 26S protease regulatory 99.3 4.4E-12 1.5E-16 105.5 9.2 76 577-652 1-76 (78)
87 2krk_A 26S protease regulatory 99.3 3.9E-12 1.3E-16 107.9 8.6 77 576-652 8-84 (86)
88 2bjv_A PSP operon transcriptio 99.3 3.5E-11 1.2E-15 123.0 16.8 212 376-642 3-250 (265)
89 3vlf_B 26S protease regulatory 99.3 1.2E-11 4.2E-16 105.3 8.9 85 580-664 2-87 (88)
90 1ojl_A Transcriptional regulat 99.2 1.8E-11 6.1E-16 128.4 9.8 209 380-643 3-246 (304)
91 1w5s_A Origin recognition comp 99.2 2.8E-10 9.4E-15 123.2 18.3 224 379-650 22-294 (412)
92 3aji_B S6C, proteasome (prosom 99.2 2.7E-11 9.4E-16 101.9 7.2 81 579-660 1-81 (83)
93 3k1j_A LON protease, ATP-depen 99.2 1E-10 3.4E-15 134.0 13.1 235 372-648 34-374 (604)
94 2ce7_A Cell division protein F 99.2 3.3E-13 1.1E-17 149.5 -7.4 234 272-553 18-259 (476)
95 1a5t_A Delta prime, HOLB; zinc 99.1 1.1E-09 3.8E-14 116.2 15.6 174 384-625 7-208 (334)
96 3n70_A Transport activator; si 99.1 1.2E-10 4.1E-15 108.3 6.8 96 380-507 2-100 (145)
97 3co5_A Putative two-component 99.0 1.2E-10 4E-15 108.2 5.3 97 380-509 5-101 (143)
98 2gno_A DNA polymerase III, gam 99.0 3.9E-09 1.3E-13 110.6 16.0 142 383-592 1-152 (305)
99 2dzn_B 26S protease regulatory 99.0 1.1E-10 3.7E-15 98.1 2.8 78 582-659 1-79 (82)
100 3cf0_A Transitional endoplasmi 99.0 1.8E-12 6.2E-17 135.6 -11.1 211 274-534 19-240 (301)
101 1xwi_A SKD1 protein; VPS4B, AA 99.0 1.1E-11 3.9E-16 130.9 -5.9 213 272-535 14-235 (322)
102 3cmw_A Protein RECA, recombina 99.0 4.1E-10 1.4E-14 139.8 6.8 141 374-514 1015-1205(1706)
103 2dhr_A FTSH; AAA+ protein, hex 98.9 1.8E-11 6.2E-16 136.3 -5.1 231 275-553 36-274 (499)
104 1g41_A Heat shock protein HSLU 98.9 2.6E-09 9E-14 116.8 9.8 319 268-649 13-433 (444)
105 3eie_A Vacuolar protein sortin 98.9 1.1E-11 3.9E-16 130.8 -9.5 212 275-537 23-242 (322)
106 3h4m_A Proteasome-activating n 98.9 3E-11 1E-15 124.7 -6.4 243 248-551 9-259 (285)
107 3ec2_A DNA replication protein 98.8 1.2E-08 4.2E-13 97.7 11.5 93 407-510 32-129 (180)
108 1lv7_A FTSH; alpha/beta domain 98.8 6.5E-11 2.2E-15 120.5 -5.0 227 275-549 17-251 (257)
109 2qp9_X Vacuolar protein sortin 98.8 1.2E-11 4.2E-16 132.5 -12.1 217 269-535 50-273 (355)
110 4akg_A Glutathione S-transfera 98.7 6.7E-08 2.3E-12 125.1 16.0 148 412-595 1266-1434(2695)
111 2zan_A Vacuolar protein sortin 98.7 2.8E-10 9.5E-15 125.6 -5.3 221 250-535 128-357 (444)
112 3hu3_A Transitional endoplasmi 98.7 1.9E-10 6.6E-15 128.1 -8.0 315 171-536 44-428 (489)
113 3f8t_A Predicted ATPase involv 98.7 1.7E-07 5.9E-12 102.2 15.2 196 415-654 241-488 (506)
114 2fna_A Conserved hypothetical 98.6 2.6E-06 8.9E-11 89.5 20.7 185 377-624 11-252 (357)
115 1ixz_A ATP-dependent metallopr 98.6 1.2E-09 4.2E-14 110.8 -5.6 225 275-547 21-253 (254)
116 2qen_A Walker-type ATPase; unk 98.5 8.2E-06 2.8E-10 85.5 21.2 188 377-623 10-247 (350)
117 1ny5_A Transcriptional regulat 98.5 6.8E-07 2.3E-11 96.6 12.8 213 379-646 137-384 (387)
118 2wg5_A General control protein 98.5 4.2E-07 1.4E-11 80.1 8.7 97 275-371 12-108 (109)
119 2qz4_A Paraplegin; AAA+, SPG7, 98.4 2.8E-09 9.6E-14 108.1 -7.9 235 271-551 7-250 (262)
120 2w58_A DNAI, primosome compone 98.4 1.3E-06 4.4E-11 85.0 10.3 70 413-484 54-127 (202)
121 2kjq_A DNAA-related protein; s 98.3 5.6E-07 1.9E-11 84.0 5.8 58 412-484 35-95 (149)
122 3d8b_A Fidgetin-like protein 1 98.3 5.9E-09 2E-13 111.6 -9.3 215 270-534 84-306 (357)
123 4akg_A Glutathione S-transfera 98.3 9.7E-06 3.3E-10 105.3 18.2 178 412-628 644-839 (2695)
124 2vhj_A Ntpase P4, P4; non- hyd 98.3 3.5E-07 1.2E-11 95.6 4.1 78 409-488 119-198 (331)
125 3dzd_A Transcriptional regulat 98.3 3.5E-06 1.2E-10 90.4 11.8 197 380-629 130-361 (368)
126 2r62_A Cell division protease 98.2 6E-10 2E-14 113.9 -18.5 230 275-551 16-254 (268)
127 1iy2_A ATP-dependent metallopr 98.2 1.1E-08 3.7E-13 105.3 -9.4 225 275-547 45-277 (278)
128 2qgz_A Helicase loader, putati 98.2 3.1E-06 1.1E-10 88.5 8.9 71 412-484 151-226 (308)
129 3b9p_A CG5977-PA, isoform A; A 98.2 1.7E-08 6E-13 104.5 -8.6 211 275-535 26-245 (297)
130 2r2a_A Uncharacterized protein 98.1 2.1E-06 7.2E-11 84.1 6.4 126 415-582 7-156 (199)
131 3vfd_A Spastin; ATPase, microt 98.1 3.1E-08 1.1E-12 107.1 -7.7 212 273-534 118-337 (389)
132 1svm_A Large T antigen; AAA+ f 98.1 3.8E-06 1.3E-10 90.3 7.3 119 409-578 165-284 (377)
133 1tue_A Replication protein E1; 98.1 5.6E-06 1.9E-10 81.0 7.8 34 409-442 54-87 (212)
134 3cmu_A Protein RECA, recombina 97.9 2.5E-05 8.6E-10 98.5 10.2 111 403-513 1414-1549(2050)
135 1ye8_A Protein THEP1, hypothet 97.8 6.3E-05 2.1E-09 72.1 9.8 26 415-440 2-27 (178)
136 1jr3_D DNA polymerase III, del 97.8 0.00024 8.1E-09 74.9 14.3 175 412-649 17-209 (343)
137 3vkg_A Dynein heavy chain, cyt 97.7 0.00011 3.8E-09 96.3 12.1 147 412-594 1303-1471(3245)
138 1u0j_A DNA replication protein 97.6 0.00022 7.6E-09 72.6 10.3 29 411-439 102-130 (267)
139 3h43_A Proteasome-activating n 97.6 0.00011 3.7E-09 61.5 6.5 76 285-360 3-78 (85)
140 2c9o_A RUVB-like 1; hexameric 97.6 5.1E-07 1.7E-11 99.7 -10.5 74 300-379 59-144 (456)
141 3m9b_A Proteasome-associated A 97.5 0.00036 1.2E-08 69.1 10.6 103 256-360 54-156 (251)
142 3vkg_A Dynein heavy chain, cyt 97.4 0.00077 2.6E-08 88.6 14.5 139 413-589 604-750 (3245)
143 1z6t_A APAF-1, apoptotic prote 97.4 0.0052 1.8E-07 69.4 19.5 47 378-435 123-169 (591)
144 2wfw_A ARC; ATP-binding protei 97.2 0.0002 6.7E-09 65.6 4.2 62 180-241 70-151 (153)
145 3sfz_A APAF-1, apoptotic pepti 97.2 0.0074 2.5E-07 73.8 19.6 174 377-620 122-326 (1249)
146 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0011 3.7E-08 64.9 9.6 37 409-445 19-58 (235)
147 2ehv_A Hypothetical protein PH 97.2 0.0016 5.5E-08 64.6 10.6 26 409-434 26-51 (251)
148 1qhx_A CPT, protein (chloramph 97.1 0.00044 1.5E-08 65.2 5.3 37 413-449 3-39 (178)
149 3hr8_A Protein RECA; alpha and 97.1 0.00089 3E-08 71.2 8.1 78 409-486 57-153 (356)
150 1n0w_A DNA repair protein RAD5 97.1 0.0019 6.4E-08 63.9 10.1 78 409-486 20-133 (243)
151 2zr9_A Protein RECA, recombina 97.0 0.00081 2.8E-08 71.4 7.2 78 409-486 57-153 (349)
152 1xp8_A RECA protein, recombina 97.0 0.0019 6.6E-08 68.9 9.6 78 409-486 70-166 (366)
153 3vaa_A Shikimate kinase, SK; s 96.9 0.00052 1.8E-08 66.4 4.1 36 410-445 22-57 (199)
154 1zp6_A Hypothetical protein AT 96.8 0.00068 2.3E-08 64.7 4.2 41 409-449 5-45 (191)
155 1u94_A RECA protein, recombina 96.8 0.0018 6.3E-08 68.8 8.0 78 409-486 59-155 (356)
156 2a5y_B CED-4; apoptosis; HET: 96.8 0.0089 3E-07 67.2 14.0 44 382-435 131-174 (549)
157 3trf_A Shikimate kinase, SK; a 96.8 0.00071 2.4E-08 64.2 3.9 33 413-445 5-37 (185)
158 2rhm_A Putative kinase; P-loop 96.8 0.00088 3E-08 63.8 4.4 35 410-444 2-36 (193)
159 2cvh_A DNA repair and recombin 96.8 0.0019 6.5E-08 62.8 6.9 39 409-447 16-54 (220)
160 2ff7_A Alpha-hemolysin translo 96.7 0.0099 3.4E-07 59.8 12.1 28 410-437 32-59 (247)
161 3gfo_A Cobalt import ATP-bindi 96.7 0.0072 2.5E-07 61.9 11.0 28 410-437 31-58 (275)
162 3t15_A Ribulose bisphosphate c 96.7 3.5E-05 1.2E-09 79.8 -6.5 153 298-468 30-197 (293)
163 3cmu_A Protein RECA, recombina 96.7 0.0017 5.6E-08 82.3 7.1 87 400-486 716-824 (2050)
164 2z43_A DNA repair and recombin 96.7 0.003 1E-07 66.2 7.9 78 409-486 103-217 (324)
165 3tif_A Uncharacterized ABC tra 96.7 0.006 2.1E-07 60.9 9.7 28 410-437 28-55 (235)
166 4g1u_C Hemin import ATP-bindin 96.6 0.0049 1.7E-07 62.7 9.1 28 410-437 34-61 (266)
167 2eyu_A Twitching motility prot 96.6 0.0011 3.9E-08 67.3 4.2 72 410-481 22-107 (261)
168 2cbz_A Multidrug resistance-as 96.6 0.0086 2.9E-07 59.8 10.6 29 409-437 27-55 (237)
169 3tui_C Methionine import ATP-b 96.6 0.0056 1.9E-07 65.1 9.4 28 410-437 51-78 (366)
170 3iij_A Coilin-interacting nucl 96.6 0.0013 4.4E-08 62.3 4.1 34 411-444 9-42 (180)
171 3kw6_A 26S protease regulatory 96.6 0.0002 6.8E-09 58.8 -1.4 72 455-550 2-73 (78)
172 3rlf_A Maltose/maltodextrin im 96.6 0.0049 1.7E-07 66.0 9.0 28 410-437 26-53 (381)
173 2krk_A 26S protease regulatory 96.6 0.00026 8.9E-09 59.4 -0.8 72 455-550 10-81 (86)
174 1v5w_A DMC1, meiotic recombina 96.6 0.0048 1.6E-07 65.1 8.7 28 409-436 118-145 (343)
175 3lda_A DNA repair protein RAD5 96.6 0.0038 1.3E-07 67.4 8.0 27 409-435 174-200 (400)
176 3vlf_B 26S protease regulatory 96.6 0.00026 8.9E-09 59.7 -0.9 74 459-556 4-77 (88)
177 3jvv_A Twitching mobility prot 96.5 0.0019 6.6E-08 68.6 5.3 71 412-482 122-206 (356)
178 1kag_A SKI, shikimate kinase I 96.5 0.0016 5.4E-08 61.0 4.2 31 413-443 4-34 (173)
179 3kb2_A SPBC2 prophage-derived 96.5 0.0015 5.3E-08 60.8 4.0 32 415-446 3-34 (173)
180 3io5_A Recombination and repai 96.5 0.0048 1.6E-07 64.2 8.0 78 409-487 25-126 (333)
181 2dr3_A UPF0273 protein PH0284; 96.5 0.012 4.2E-07 57.9 10.8 37 409-445 19-58 (247)
182 2ixe_A Antigen peptide transpo 96.5 0.012 4E-07 60.1 10.5 29 409-437 41-69 (271)
183 1via_A Shikimate kinase; struc 96.4 0.0015 5.1E-08 61.6 3.5 30 415-444 6-35 (175)
184 2pcj_A ABC transporter, lipopr 96.4 0.0094 3.2E-07 58.9 9.5 29 410-438 27-55 (224)
185 3nh6_A ATP-binding cassette SU 96.4 0.012 4.2E-07 61.1 10.6 29 410-438 77-105 (306)
186 1y63_A LMAJ004144AAA protein; 96.4 0.0018 6E-08 61.9 3.8 32 412-443 9-41 (184)
187 2yyz_A Sugar ABC transporter, 96.4 0.01 3.6E-07 63.0 10.0 28 410-437 26-53 (359)
188 2iyv_A Shikimate kinase, SK; t 96.4 0.0018 6.3E-08 61.3 3.7 31 415-445 4-34 (184)
189 2r8r_A Sensor protein; KDPD, P 96.4 0.096 3.3E-06 51.8 16.0 31 414-444 7-40 (228)
190 1z47_A CYSA, putative ABC-tran 96.3 0.0098 3.4E-07 63.1 9.4 28 410-437 38-65 (355)
191 2ghi_A Transport protein; mult 96.3 0.022 7.5E-07 57.7 11.6 29 409-437 42-70 (260)
192 1zd8_A GTP:AMP phosphotransfer 96.3 0.0018 6.1E-08 63.9 3.3 35 410-444 4-38 (227)
193 2cdn_A Adenylate kinase; phosp 96.3 0.0025 8.5E-08 61.5 4.2 33 412-444 19-51 (201)
194 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0054 1.8E-07 65.2 7.1 28 410-437 27-54 (359)
195 1vpl_A ABC transporter, ATP-bi 96.3 0.017 6E-07 58.3 10.6 28 410-437 38-65 (256)
196 2olj_A Amino acid ABC transpor 96.3 0.013 4.4E-07 59.5 9.6 29 410-438 47-75 (263)
197 3thx_B DNA mismatch repair pro 96.3 0.012 4.2E-07 69.8 10.7 26 410-435 670-695 (918)
198 1g29_1 MALK, maltose transport 96.3 0.0076 2.6E-07 64.4 8.2 28 410-437 26-53 (372)
199 1tev_A UMP-CMP kinase; ploop, 96.3 0.0022 7.6E-08 60.9 3.6 32 413-444 3-34 (196)
200 1gvn_B Zeta; postsegregational 96.3 0.0027 9.2E-08 65.4 4.4 39 411-449 31-69 (287)
201 1zuh_A Shikimate kinase; alpha 96.3 0.0024 8.1E-08 59.7 3.7 31 414-444 8-38 (168)
202 2c95_A Adenylate kinase 1; tra 96.2 0.0023 7.8E-08 61.1 3.5 34 412-445 8-41 (196)
203 2onk_A Molybdate/tungstate ABC 96.2 0.011 3.8E-07 59.1 8.7 27 410-437 22-48 (240)
204 1aky_A Adenylate kinase; ATP:A 96.2 0.0026 9E-08 62.3 4.0 33 412-444 3-35 (220)
205 2it1_A 362AA long hypothetical 96.2 0.01 3.5E-07 63.1 8.7 28 410-437 26-53 (362)
206 1v43_A Sugar-binding transport 96.2 0.012 4E-07 62.9 9.1 28 410-437 34-61 (372)
207 2pez_A Bifunctional 3'-phospho 96.2 0.004 1.4E-07 58.8 5.0 38 411-448 3-43 (179)
208 3t61_A Gluconokinase; PSI-biol 96.2 0.0032 1.1E-07 60.7 4.3 32 413-444 18-49 (202)
209 2ze6_A Isopentenyl transferase 96.2 0.0029 9.9E-08 63.8 4.1 33 415-447 3-35 (253)
210 4a74_A DNA repair and recombin 96.2 0.008 2.7E-07 58.6 7.3 29 409-437 21-49 (231)
211 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.01 3.4E-07 60.0 8.2 39 412-450 3-44 (260)
212 3cm0_A Adenylate kinase; ATP-b 96.2 0.0027 9.3E-08 60.1 3.7 31 413-443 4-34 (186)
213 3lw7_A Adenylate kinase relate 96.2 0.0024 8.3E-08 59.2 3.3 29 415-444 3-31 (179)
214 4gp7_A Metallophosphoesterase; 96.2 0.0028 9.7E-08 59.7 3.7 23 410-432 6-28 (171)
215 3umf_A Adenylate kinase; rossm 96.1 0.0025 8.5E-08 63.0 3.3 39 410-450 26-64 (217)
216 2p5t_B PEZT; postsegregational 96.1 0.003 1E-07 63.6 4.0 40 410-449 29-68 (253)
217 3d31_A Sulfate/molybdate ABC t 96.1 0.016 5.4E-07 61.4 9.7 28 410-437 23-50 (348)
218 4eun_A Thermoresistant glucoki 96.1 0.0039 1.3E-07 60.2 4.7 32 411-442 27-58 (200)
219 1kht_A Adenylate kinase; phosp 96.1 0.0025 8.6E-08 60.4 3.2 26 413-438 3-28 (192)
220 1knq_A Gluconate kinase; ALFA/ 96.1 0.0038 1.3E-07 58.6 4.4 32 412-443 7-38 (175)
221 1pzn_A RAD51, DNA repair and r 96.1 0.0076 2.6E-07 63.8 7.2 29 409-437 127-155 (349)
222 1e6c_A Shikimate kinase; phosp 96.1 0.0028 9.6E-08 59.2 3.4 29 415-443 4-32 (173)
223 2vli_A Antibiotic resistance p 96.1 0.0028 9.6E-08 59.8 3.4 30 413-442 5-34 (183)
224 3be4_A Adenylate kinase; malar 96.1 0.0024 8.3E-08 62.6 2.9 32 413-444 5-36 (217)
225 1ly1_A Polynucleotide kinase; 96.1 0.0031 1.1E-07 59.1 3.4 28 414-441 3-31 (181)
226 1oxx_K GLCV, glucose, ABC tran 96.1 0.0079 2.7E-07 63.8 6.9 28 410-437 28-55 (353)
227 2ewv_A Twitching motility prot 96.0 0.0046 1.6E-07 66.1 5.1 74 409-482 132-219 (372)
228 2zts_A Putative uncharacterize 96.0 0.027 9.3E-07 55.5 10.4 37 409-445 26-66 (251)
229 3uie_A Adenylyl-sulfate kinase 96.0 0.0055 1.9E-07 59.1 5.0 39 411-449 23-64 (200)
230 1qf9_A UMP/CMP kinase, protein 96.0 0.0035 1.2E-07 59.3 3.6 32 413-444 6-37 (194)
231 2orw_A Thymidine kinase; TMTK, 96.0 0.0027 9.4E-08 60.9 2.8 25 413-437 3-27 (184)
232 2bwj_A Adenylate kinase 5; pho 96.0 0.0032 1.1E-07 60.2 3.3 33 412-444 11-43 (199)
233 2nq2_C Hypothetical ABC transp 96.0 0.022 7.4E-07 57.5 9.5 29 410-438 28-56 (253)
234 1ukz_A Uridylate kinase; trans 96.0 0.0038 1.3E-07 60.1 3.8 34 412-445 14-47 (203)
235 2wfw_A ARC; ATP-binding protei 96.0 0.022 7.6E-07 52.1 8.4 63 171-235 1-63 (153)
236 1ak2_A Adenylate kinase isoenz 96.0 0.0043 1.5E-07 61.5 4.1 33 412-444 15-47 (233)
237 3tlx_A Adenylate kinase 2; str 96.0 0.004 1.4E-07 62.3 3.9 35 411-445 27-61 (243)
238 3dl0_A Adenylate kinase; phosp 95.9 0.0038 1.3E-07 60.9 3.5 31 415-445 2-32 (216)
239 3gd7_A Fusion complex of cysti 95.9 0.0085 2.9E-07 64.4 6.5 27 410-436 44-70 (390)
240 3fb4_A Adenylate kinase; psych 95.9 0.0038 1.3E-07 60.8 3.5 31 415-445 2-32 (216)
241 2pt5_A Shikimate kinase, SK; a 95.9 0.0041 1.4E-07 57.8 3.5 30 415-444 2-31 (168)
242 2qi9_C Vitamin B12 import ATP- 95.9 0.023 7.9E-07 57.2 9.2 29 410-438 23-51 (249)
243 3thx_A DNA mismatch repair pro 95.8 0.023 7.8E-07 67.7 10.1 24 411-434 660-683 (934)
244 1zak_A Adenylate kinase; ATP:A 95.8 0.0045 1.5E-07 60.7 3.4 32 412-443 4-35 (222)
245 2i1q_A DNA repair and recombin 95.8 0.011 3.7E-07 61.6 6.3 28 409-436 94-121 (322)
246 2bbw_A Adenylate kinase 4, AK4 95.7 0.0056 1.9E-07 61.1 3.8 32 412-443 26-57 (246)
247 3sr0_A Adenylate kinase; phosp 95.7 0.0051 1.7E-07 60.2 3.4 30 415-444 2-31 (206)
248 4a82_A Cystic fibrosis transme 95.7 0.035 1.2E-06 62.7 10.8 29 410-438 364-392 (578)
249 3b5x_A Lipid A export ATP-bind 95.7 0.018 6.2E-07 65.2 8.3 29 409-437 365-393 (582)
250 3b60_A Lipid A export ATP-bind 95.7 0.044 1.5E-06 62.0 11.4 29 410-438 366-394 (582)
251 2v54_A DTMP kinase, thymidylat 95.7 0.009 3.1E-07 57.3 4.9 34 412-445 3-37 (204)
252 3cmw_A Protein RECA, recombina 95.6 0.019 6.5E-07 71.9 8.7 105 409-513 1427-1553(1706)
253 2b8t_A Thymidine kinase; deoxy 95.6 0.026 8.8E-07 55.9 8.1 73 412-484 11-101 (223)
254 1cke_A CK, MSSA, protein (cyti 95.6 0.0076 2.6E-07 58.9 4.1 32 413-444 5-36 (227)
255 2fz4_A DNA repair protein RAD2 95.6 0.06 2E-06 53.4 10.7 32 414-445 109-140 (237)
256 1jjv_A Dephospho-COA kinase; P 95.6 0.013 4.4E-07 56.5 5.6 28 415-443 4-31 (206)
257 1vma_A Cell division protein F 95.5 0.027 9.2E-07 58.5 8.1 72 411-482 102-196 (306)
258 1nks_A Adenylate kinase; therm 95.5 0.0081 2.8E-07 56.8 3.8 24 415-438 3-26 (194)
259 2jaq_A Deoxyguanosine kinase; 95.5 0.0083 2.8E-07 57.3 3.9 29 415-443 2-30 (205)
260 1e4v_A Adenylate kinase; trans 95.5 0.0062 2.1E-07 59.3 3.0 30 415-444 2-31 (214)
261 2dzn_B 26S protease regulatory 95.5 0.00034 1.2E-08 58.0 -5.3 49 503-552 22-70 (82)
262 2pbr_A DTMP kinase, thymidylat 95.4 0.011 3.8E-07 55.9 4.6 31 415-445 2-35 (195)
263 3nwj_A ATSK2; P loop, shikimat 95.4 0.0094 3.2E-07 60.1 4.2 33 413-445 48-80 (250)
264 1kgd_A CASK, peripheral plasma 95.4 0.0097 3.3E-07 56.4 4.0 27 412-438 4-30 (180)
265 3crm_A TRNA delta(2)-isopenten 95.4 0.009 3.1E-07 62.5 4.0 33 414-446 6-38 (323)
266 2r6a_A DNAB helicase, replicat 95.4 0.079 2.7E-06 57.9 11.7 37 409-445 199-239 (454)
267 1g5t_A COB(I)alamin adenosyltr 95.4 0.056 1.9E-06 52.2 9.2 32 413-444 28-62 (196)
268 2if2_A Dephospho-COA kinase; a 95.3 0.0072 2.5E-07 58.2 2.9 30 415-445 3-32 (204)
269 2j41_A Guanylate kinase; GMP, 95.3 0.0095 3.3E-07 57.2 3.7 29 410-438 3-31 (207)
270 2plr_A DTMP kinase, probable t 95.3 0.0099 3.4E-07 57.2 3.8 28 413-440 4-31 (213)
271 2qor_A Guanylate kinase; phosp 95.3 0.011 3.6E-07 57.3 4.0 29 410-438 9-37 (204)
272 3qf4_B Uncharacterized ABC tra 95.3 0.06 2.1E-06 61.1 10.9 30 409-438 377-406 (598)
273 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.0053 1.8E-07 64.5 1.9 72 411-482 169-250 (330)
274 2ga8_A Hypothetical 39.9 kDa p 95.3 0.0067 2.3E-07 64.1 2.6 30 414-443 25-54 (359)
275 2xb4_A Adenylate kinase; ATP-b 95.3 0.011 3.8E-07 58.1 4.1 29 415-443 2-30 (223)
276 1tf7_A KAIC; homohexamer, hexa 95.2 0.084 2.9E-06 58.9 11.6 25 409-433 35-59 (525)
277 2iut_A DNA translocase FTSK; n 95.2 0.12 4.2E-06 57.8 12.7 74 474-589 345-420 (574)
278 2z0h_A DTMP kinase, thymidylat 95.2 0.014 4.8E-07 55.5 4.5 30 416-445 3-35 (197)
279 3r20_A Cytidylate kinase; stru 95.2 0.014 4.7E-07 58.2 4.5 34 412-445 8-41 (233)
280 3tau_A Guanylate kinase, GMP k 95.2 0.014 4.8E-07 56.7 4.5 29 411-439 6-34 (208)
281 3qf4_A ABC transporter, ATP-bi 95.2 0.069 2.4E-06 60.5 10.8 29 410-438 366-394 (587)
282 4e22_A Cytidylate kinase; P-lo 95.1 0.015 5E-07 58.5 4.6 32 412-443 26-57 (252)
283 3aji_B S6C, proteasome (prosom 95.1 0.0034 1.2E-07 51.9 -0.2 73 458-554 3-75 (83)
284 2q6t_A DNAB replication FORK h 95.1 0.049 1.7E-06 59.4 8.9 37 409-445 196-236 (444)
285 2wwf_A Thymidilate kinase, put 95.1 0.0068 2.3E-07 58.5 1.8 29 412-440 9-37 (212)
286 3dm5_A SRP54, signal recogniti 95.0 0.042 1.5E-06 59.8 8.2 71 412-482 99-192 (443)
287 3ake_A Cytidylate kinase; CMP 95.0 0.014 4.9E-07 56.0 4.0 31 415-445 4-34 (208)
288 1vt4_I APAF-1 related killer D 95.0 0.13 4.4E-06 61.6 12.6 42 382-435 131-172 (1221)
289 3tr0_A Guanylate kinase, GMP k 95.0 0.015 5E-07 55.8 3.9 28 411-438 5-32 (205)
290 1nn5_A Similar to deoxythymidy 94.9 0.0078 2.7E-07 58.2 1.8 29 411-439 7-35 (215)
291 3a8t_A Adenylate isopentenyltr 94.9 0.014 4.8E-07 61.3 3.6 36 412-447 39-74 (339)
292 3ozx_A RNAse L inhibitor; ATP 94.9 0.04 1.4E-06 61.7 7.5 91 410-510 291-431 (538)
293 1vht_A Dephospho-COA kinase; s 94.8 0.019 6.4E-07 55.9 4.3 31 413-444 4-34 (218)
294 2qt1_A Nicotinamide riboside k 94.8 0.012 4.1E-07 56.8 2.9 33 411-443 19-52 (207)
295 3j16_B RLI1P; ribosome recycli 94.8 0.082 2.8E-06 60.0 10.1 28 410-437 100-127 (608)
296 1m7g_A Adenylylsulfate kinase; 94.8 0.02 6.7E-07 55.6 4.4 40 410-449 22-65 (211)
297 1htw_A HI0065; nucleotide-bind 94.8 0.018 6.2E-07 53.7 3.9 29 409-437 29-57 (158)
298 1uf9_A TT1252 protein; P-loop, 94.8 0.015 5E-07 55.6 3.4 31 412-443 7-37 (203)
299 1p9r_A General secretion pathw 94.8 0.064 2.2E-06 58.1 8.6 71 412-482 166-246 (418)
300 3c8u_A Fructokinase; YP_612366 94.8 0.013 4.4E-07 56.9 2.8 28 411-438 20-47 (208)
301 2grj_A Dephospho-COA kinase; T 94.7 0.016 5.4E-07 56.0 3.4 32 414-445 13-44 (192)
302 1tf7_A KAIC; homohexamer, hexa 94.7 0.15 5.1E-06 56.8 11.7 97 409-511 277-404 (525)
303 2ius_A DNA translocase FTSK; n 94.7 0.087 3E-06 58.4 9.6 40 549-590 334-375 (512)
304 3zvl_A Bifunctional polynucleo 94.7 0.032 1.1E-06 60.4 6.0 33 411-443 256-288 (416)
305 1q3t_A Cytidylate kinase; nucl 94.6 0.024 8.3E-07 56.1 4.6 35 410-444 13-47 (236)
306 1uj2_A Uridine-cytidine kinase 94.6 0.029 9.8E-07 56.2 5.1 39 412-450 21-67 (252)
307 2yvu_A Probable adenylyl-sulfa 94.6 0.02 6.8E-07 54.3 3.7 37 411-447 11-50 (186)
308 3asz_A Uridine kinase; cytidin 94.6 0.022 7.6E-07 55.0 4.1 35 411-445 4-38 (211)
309 3foz_A TRNA delta(2)-isopenten 94.6 0.021 7.1E-07 59.3 4.0 34 413-446 10-43 (316)
310 1lvg_A Guanylate kinase, GMP k 94.6 0.018 6.2E-07 55.5 3.3 27 412-438 3-29 (198)
311 2h92_A Cytidylate kinase; ross 94.5 0.021 7.1E-07 55.5 3.7 33 413-445 3-35 (219)
312 1ex7_A Guanylate kinase; subst 94.5 0.027 9.1E-07 54.1 4.3 28 414-441 2-29 (186)
313 1znw_A Guanylate kinase, GMP k 94.5 0.022 7.4E-07 55.2 3.7 29 410-438 17-45 (207)
314 2bdt_A BH3686; alpha-beta prot 94.5 0.023 7.9E-07 53.9 3.8 33 415-448 4-36 (189)
315 3ozx_A RNAse L inhibitor; ATP 94.5 0.1 3.4E-06 58.5 9.5 37 465-511 149-185 (538)
316 1z6g_A Guanylate kinase; struc 94.4 0.021 7.2E-07 56.0 3.6 28 410-437 20-47 (218)
317 3ney_A 55 kDa erythrocyte memb 94.4 0.032 1.1E-06 54.1 4.8 30 409-438 15-44 (197)
318 3a00_A Guanylate kinase, GMP k 94.4 0.021 7.1E-07 54.3 3.3 25 414-438 2-26 (186)
319 3exa_A TRNA delta(2)-isopenten 94.3 0.028 9.6E-07 58.4 4.3 34 413-446 3-36 (322)
320 3j16_B RLI1P; ribosome recycli 94.2 0.13 4.4E-06 58.4 9.9 38 463-510 476-513 (608)
321 1wb9_A DNA mismatch repair pro 94.2 0.14 4.7E-06 60.0 10.3 26 411-436 605-630 (800)
322 1cr0_A DNA primase/helicase; R 94.2 0.023 7.7E-07 58.3 3.3 30 408-437 30-59 (296)
323 4aby_A DNA repair protein RECN 94.2 0.16 5.6E-06 54.3 10.2 27 410-437 58-84 (415)
324 1rz3_A Hypothetical protein rb 94.1 0.045 1.5E-06 52.7 5.1 36 411-446 20-58 (201)
325 3d3q_A TRNA delta(2)-isopenten 94.1 0.026 8.8E-07 59.4 3.5 33 414-446 8-40 (340)
326 4f4c_A Multidrug resistance pr 94.1 0.16 5.4E-06 63.0 11.1 31 409-439 440-470 (1321)
327 2v9p_A Replication protein E1; 94.1 0.031 1.1E-06 57.9 4.1 32 409-440 122-153 (305)
328 1s96_A Guanylate kinase, GMP k 94.0 0.03 1E-06 55.1 3.7 30 410-439 13-42 (219)
329 2oap_1 GSPE-2, type II secreti 94.0 0.024 8.2E-07 63.1 3.3 71 412-482 259-343 (511)
330 3kl4_A SRP54, signal recogniti 94.0 0.062 2.1E-06 58.4 6.4 72 412-483 96-190 (433)
331 1ltq_A Polynucleotide kinase; 94.0 0.029 9.9E-07 57.4 3.5 30 414-443 3-33 (301)
332 2jeo_A Uridine-cytidine kinase 93.9 0.032 1.1E-06 55.6 3.7 31 410-440 22-52 (245)
333 2f6r_A COA synthase, bifunctio 93.9 0.028 9.5E-07 57.5 3.2 31 413-444 75-105 (281)
334 2qmh_A HPR kinase/phosphorylas 93.9 0.031 1E-06 54.3 3.2 30 413-443 34-63 (205)
335 3e1s_A Exodeoxyribonuclease V, 93.8 0.03 1E-06 63.3 3.6 25 413-437 204-228 (574)
336 3upu_A ATP-dependent DNA helic 93.8 0.048 1.6E-06 59.7 5.2 23 415-437 47-69 (459)
337 1q57_A DNA primase/helicase; d 93.8 0.15 5.3E-06 56.3 9.3 37 409-445 238-278 (503)
338 1nlf_A Regulatory protein REPA 93.8 0.024 8.4E-07 57.6 2.6 29 409-437 26-54 (279)
339 2yl4_A ATP-binding cassette SU 93.6 0.17 5.8E-06 57.3 9.4 29 410-438 367-395 (595)
340 3e70_C DPA, signal recognition 93.5 0.12 4.1E-06 54.1 7.3 27 411-437 127-153 (328)
341 3bk7_A ABC transporter ATP-bin 93.5 0.11 3.6E-06 59.2 7.4 27 411-437 380-406 (607)
342 3syl_A Protein CBBX; photosynt 93.4 0.052 1.8E-06 55.5 4.3 125 262-396 23-164 (309)
343 4f4c_A Multidrug resistance pr 93.4 0.23 7.8E-06 61.6 10.7 29 410-438 1102-1130(1321)
344 3eph_A TRNA isopentenyltransfe 93.4 0.039 1.3E-06 59.3 3.3 33 413-445 2-34 (409)
345 3lnc_A Guanylate kinase, GMP k 93.3 0.027 9.1E-07 55.5 1.9 29 410-438 24-53 (231)
346 2iw3_A Elongation factor 3A; a 93.2 0.2 7E-06 59.6 9.5 26 410-435 458-483 (986)
347 4eaq_A DTMP kinase, thymidylat 93.2 0.055 1.9E-06 53.5 4.0 28 412-439 25-52 (229)
348 3bh0_A DNAB-like replicative h 93.2 0.051 1.8E-06 56.4 3.9 37 409-445 64-103 (315)
349 2o8b_B DNA mismatch repair pro 93.2 0.32 1.1E-05 58.5 11.3 22 413-434 789-810 (1022)
350 3fdi_A Uncharacterized protein 93.1 0.052 1.8E-06 52.6 3.6 30 414-443 7-36 (201)
351 1b0u_A Histidine permease; ABC 93.0 0.042 1.4E-06 55.6 2.8 29 410-438 29-57 (262)
352 3g5u_A MCG1178, multidrug resi 92.9 0.2 6.7E-06 62.0 9.1 30 409-438 412-441 (1284)
353 3ux8_A Excinuclease ABC, A sub 92.9 0.099 3.4E-06 60.1 6.0 36 466-511 214-251 (670)
354 1x6v_B Bifunctional 3'-phospho 92.9 0.08 2.7E-06 60.2 5.1 38 412-449 51-91 (630)
355 3g5u_A MCG1178, multidrug resi 92.9 0.33 1.1E-05 60.0 11.0 28 410-437 1056-1083(1284)
356 3aez_A Pantothenate kinase; tr 92.8 0.055 1.9E-06 56.2 3.5 30 410-439 87-116 (312)
357 3b9q_A Chloroplast SRP recepto 92.8 0.063 2.1E-06 55.5 3.8 28 410-437 97-124 (302)
358 1mv5_A LMRA, multidrug resista 92.8 0.045 1.5E-06 54.7 2.6 28 410-437 25-52 (243)
359 2i3b_A HCR-ntpase, human cance 92.7 0.061 2.1E-06 51.6 3.4 24 414-437 2-25 (189)
360 1ls1_A Signal recognition part 92.7 0.25 8.7E-06 50.7 8.3 70 412-481 97-189 (295)
361 1sgw_A Putative ABC transporte 92.7 0.04 1.4E-06 54.0 2.1 29 410-438 32-60 (214)
362 2pze_A Cystic fibrosis transme 92.6 0.043 1.5E-06 54.3 2.2 29 410-438 31-59 (229)
363 1rj9_A FTSY, signal recognitio 92.6 0.069 2.4E-06 55.3 3.8 26 412-437 101-126 (304)
364 1g6h_A High-affinity branched- 92.5 0.044 1.5E-06 55.3 2.2 28 410-437 30-57 (257)
365 2j37_W Signal recognition part 92.5 0.17 5.8E-06 56.1 7.1 35 412-446 100-137 (504)
366 3ux8_A Excinuclease ABC, A sub 92.5 0.19 6.6E-06 57.7 7.8 24 410-433 345-368 (670)
367 1ewq_A DNA mismatch repair pro 92.4 0.33 1.1E-05 56.5 9.7 24 413-436 576-599 (765)
368 1ji0_A ABC transporter; ATP bi 92.4 0.047 1.6E-06 54.5 2.2 29 410-438 29-57 (240)
369 3gmt_A Adenylate kinase; ssgci 92.4 0.062 2.1E-06 53.3 3.0 31 414-444 9-39 (230)
370 3kta_A Chromosome segregation 92.3 0.07 2.4E-06 50.1 3.2 25 415-439 28-52 (182)
371 2zu0_C Probable ATP-dependent 92.3 0.068 2.3E-06 54.2 3.3 27 410-436 43-69 (267)
372 2xxa_A Signal recognition part 92.3 0.21 7.2E-06 54.3 7.4 36 412-447 99-138 (433)
373 2yz2_A Putative ABC transporte 92.3 0.058 2E-06 54.7 2.7 28 410-437 30-57 (266)
374 1gtv_A TMK, thymidylate kinase 92.2 0.034 1.2E-06 53.6 0.9 25 415-439 2-26 (214)
375 1odf_A YGR205W, hypothetical 3 92.2 0.095 3.2E-06 53.9 4.2 29 411-439 29-57 (290)
376 2ihy_A ABC transporter, ATP-bi 92.1 0.054 1.8E-06 55.4 2.2 28 410-437 44-71 (279)
377 1j8m_F SRP54, signal recogniti 92.1 0.21 7.2E-06 51.4 6.7 34 413-446 98-134 (297)
378 2d2e_A SUFC protein; ABC-ATPas 92.0 0.065 2.2E-06 53.7 2.7 27 410-436 26-52 (250)
379 3b85_A Phosphate starvation-in 92.0 0.042 1.4E-06 53.7 1.2 26 411-436 20-45 (208)
380 2og2_A Putative signal recogni 92.0 0.087 3E-06 55.8 3.8 28 410-437 154-181 (359)
381 4b3f_X DNA-binding protein smu 91.8 0.17 5.9E-06 57.8 6.3 38 384-436 191-228 (646)
382 1np6_A Molybdopterin-guanine d 91.8 0.11 3.7E-06 49.2 3.8 26 412-437 5-30 (174)
383 1sq5_A Pantothenate kinase; P- 91.7 0.089 3E-06 54.4 3.4 28 411-438 78-105 (308)
384 3tqc_A Pantothenate kinase; bi 91.7 0.1 3.5E-06 54.4 3.8 27 412-438 91-117 (321)
385 1a7j_A Phosphoribulokinase; tr 91.6 0.082 2.8E-06 54.3 3.0 37 413-449 5-44 (290)
386 1c9k_A COBU, adenosylcobinamid 91.6 0.1 3.5E-06 49.8 3.3 31 416-447 2-32 (180)
387 2dgy_A MGC11102 protein; EIF-1 91.5 0.33 1.1E-05 42.3 6.3 49 177-225 15-64 (111)
388 1lw7_A Transcriptional regulat 91.5 0.11 3.7E-06 55.0 3.9 28 413-440 170-197 (365)
389 3cr8_A Sulfate adenylyltranfer 91.4 0.085 2.9E-06 59.2 3.1 40 410-449 366-409 (552)
390 2yhs_A FTSY, cell division pro 91.4 0.11 3.8E-06 57.3 3.9 28 410-437 290-317 (503)
391 2axn_A 6-phosphofructo-2-kinas 91.3 0.18 6.2E-06 56.1 5.6 38 412-449 34-74 (520)
392 3hdt_A Putative kinase; struct 91.2 0.11 3.8E-06 51.2 3.3 30 414-443 15-44 (223)
393 4a1f_A DNAB helicase, replicat 91.2 0.1 3.6E-06 54.7 3.3 36 409-444 42-80 (338)
394 2gza_A Type IV secretion syste 91.2 0.087 3E-06 55.9 2.8 73 410-482 172-262 (361)
395 3tqf_A HPR(Ser) kinase; transf 91.2 0.095 3.3E-06 49.6 2.7 25 412-436 15-39 (181)
396 2px0_A Flagellar biosynthesis 91.2 0.11 3.7E-06 53.6 3.3 35 412-446 104-142 (296)
397 3i4o_A Translation initiation 91.0 0.28 9.5E-06 40.1 4.9 47 179-225 16-64 (79)
398 2ocp_A DGK, deoxyguanosine kin 90.9 0.12 4.1E-06 51.1 3.3 26 413-438 2-27 (241)
399 1m8p_A Sulfate adenylyltransfe 90.9 0.15 5.2E-06 57.4 4.4 37 412-448 395-435 (573)
400 2pjz_A Hypothetical protein ST 90.8 0.1 3.4E-06 52.9 2.6 27 410-437 28-54 (263)
401 3b6e_A Interferon-induced heli 90.7 0.46 1.6E-05 45.2 7.2 23 414-436 49-71 (216)
402 2bbs_A Cystic fibrosis transme 90.7 0.077 2.6E-06 54.5 1.7 28 410-437 61-88 (290)
403 1p5z_B DCK, deoxycytidine kina 90.5 0.079 2.7E-06 53.2 1.5 28 411-438 22-49 (263)
404 1xjc_A MOBB protein homolog; s 90.5 0.17 5.7E-06 47.8 3.7 24 414-437 5-28 (169)
405 3bgw_A DNAB-like replicative h 90.5 0.13 4.4E-06 56.2 3.3 37 409-445 193-232 (444)
406 3p32_A Probable GTPase RV1496/ 90.3 0.54 1.8E-05 49.5 7.9 26 412-437 78-103 (355)
407 1zu4_A FTSY; GTPase, signal re 90.3 0.17 5.7E-06 52.8 3.8 36 411-446 103-141 (320)
408 1ah9_A IF1, initiation factor 90.2 0.58 2E-05 37.3 6.1 47 179-225 8-56 (71)
409 3sop_A Neuronal-specific septi 89.8 0.15 5E-06 51.8 2.9 24 415-438 4-27 (270)
410 1d7q_A Translation initiation 89.8 0.58 2E-05 42.5 6.4 50 176-225 30-80 (143)
411 2npi_A Protein CLP1; CLP1-PCF1 89.8 0.16 5.3E-06 55.8 3.2 29 409-437 134-162 (460)
412 2f1r_A Molybdopterin-guanine d 89.7 0.12 4.1E-06 48.8 2.0 26 414-439 3-28 (171)
413 2oqk_A Putative translation in 89.6 0.54 1.9E-05 41.4 6.0 59 177-235 32-96 (117)
414 2dpy_A FLII, flagellum-specifi 89.4 0.26 8.9E-06 53.6 4.6 31 410-440 154-184 (438)
415 4edh_A DTMP kinase, thymidylat 89.3 0.21 7.3E-06 48.7 3.5 27 412-438 5-31 (213)
416 2f9l_A RAB11B, member RAS onco 89.3 0.19 6.4E-06 47.8 3.0 22 415-436 7-28 (199)
417 1g8f_A Sulfate adenylyltransfe 89.2 0.18 6.3E-06 55.9 3.2 28 412-439 394-421 (511)
418 3v9p_A DTMP kinase, thymidylat 89.1 0.2 6.7E-06 49.6 3.1 27 412-438 24-50 (227)
419 3tmk_A Thymidylate kinase; pho 89.1 0.24 8.1E-06 48.6 3.7 29 412-440 4-32 (216)
420 2vp4_A Deoxynucleoside kinase; 89.0 0.24 8.2E-06 48.6 3.7 32 411-443 18-49 (230)
421 1oix_A RAS-related protein RAB 88.9 0.18 6.2E-06 47.7 2.6 23 415-437 31-53 (191)
422 1jt8_A EIF-1A, probable transl 88.8 0.22 7.6E-06 42.7 2.8 49 177-225 20-69 (102)
423 4i1u_A Dephospho-COA kinase; s 88.8 0.42 1.4E-05 46.6 5.2 51 414-467 10-60 (210)
424 2obl_A ESCN; ATPase, hydrolase 88.8 0.26 8.7E-06 52.0 3.9 32 410-441 68-99 (347)
425 1z2a_A RAS-related protein RAB 88.6 0.22 7.6E-06 45.1 2.9 23 414-436 6-28 (168)
426 2dyk_A GTP-binding protein; GT 88.5 0.25 8.5E-06 44.5 3.1 22 415-436 3-24 (161)
427 1nrj_B SR-beta, signal recogni 88.4 0.29 1E-05 46.9 3.8 26 412-437 11-36 (218)
428 1w4r_A Thymidine kinase; type 88.4 0.38 1.3E-05 46.3 4.5 33 413-445 20-55 (195)
429 2p67_A LAO/AO transport system 88.4 0.84 2.9E-05 47.7 7.6 27 411-437 54-80 (341)
430 1yqt_A RNAse L inhibitor; ATP- 88.3 0.27 9.1E-06 55.0 3.8 28 410-437 44-71 (538)
431 2ged_A SR-beta, signal recogni 88.2 0.32 1.1E-05 45.5 3.8 27 411-437 46-72 (193)
432 2qm8_A GTPase/ATPase; G protei 88.1 0.29 9.9E-06 51.3 3.8 28 410-437 52-79 (337)
433 1f2t_A RAD50 ABC-ATPase; DNA d 88.1 0.31 1.1E-05 44.6 3.5 24 414-437 24-47 (149)
434 3lv8_A DTMP kinase, thymidylat 88.1 0.26 8.9E-06 49.0 3.2 27 412-438 26-52 (236)
435 3ld9_A DTMP kinase, thymidylat 88.1 0.31 1E-05 48.0 3.7 29 411-439 19-47 (223)
436 2p5s_A RAS and EF-hand domain 88.0 0.27 9.3E-06 46.5 3.2 26 411-436 26-51 (199)
437 1kao_A RAP2A; GTP-binding prot 87.9 0.28 9.6E-06 44.2 3.1 23 414-436 4-26 (167)
438 2qag_B Septin-6, protein NEDD5 87.7 0.25 8.5E-06 53.5 3.0 28 409-436 36-65 (427)
439 3vkw_A Replicase large subunit 87.7 0.28 9.6E-06 53.3 3.4 26 411-436 159-184 (446)
440 2wji_A Ferrous iron transport 87.7 0.27 9.3E-06 45.0 2.9 22 415-436 5-26 (165)
441 2zej_A Dardarin, leucine-rich 87.6 0.23 7.9E-06 46.4 2.4 21 415-435 4-24 (184)
442 2v3c_C SRP54, signal recogniti 87.5 0.22 7.6E-06 54.1 2.5 35 412-446 98-135 (432)
443 2lkc_A Translation initiation 87.5 0.35 1.2E-05 44.3 3.6 24 412-435 7-30 (178)
444 2xau_A PRE-mRNA-splicing facto 87.5 0.91 3.1E-05 53.0 7.8 57 377-435 73-131 (773)
445 1pui_A ENGB, probable GTP-bind 87.5 0.17 5.8E-06 48.3 1.4 29 408-436 21-49 (210)
446 1bif_A 6-phosphofructo-2-kinas 87.4 0.27 9.1E-06 53.9 3.1 27 412-438 38-64 (469)
447 1ek0_A Protein (GTP-binding pr 87.4 0.31 1E-05 44.1 3.1 22 415-436 5-26 (170)
448 1u8z_A RAS-related protein RAL 87.4 0.33 1.1E-05 43.8 3.2 23 414-436 5-27 (168)
449 2ce2_X GTPase HRAS; signaling 87.3 0.27 9.2E-06 44.2 2.6 22 415-436 5-26 (166)
450 1z0j_A RAB-22, RAS-related pro 87.3 0.32 1.1E-05 44.1 3.1 24 414-437 7-30 (170)
451 1upt_A ARL1, ADP-ribosylation 87.2 0.38 1.3E-05 43.7 3.6 24 412-435 6-29 (171)
452 2nzj_A GTP-binding protein REM 87.1 0.31 1.1E-05 44.5 3.0 23 414-436 5-27 (175)
453 1wms_A RAB-9, RAB9, RAS-relate 87.1 0.35 1.2E-05 44.3 3.3 23 414-436 8-30 (177)
454 1z08_A RAS-related protein RAB 87.0 0.34 1.2E-05 44.0 3.1 23 414-436 7-29 (170)
455 2gk6_A Regulator of nonsense t 87.0 0.33 1.1E-05 55.2 3.6 24 414-437 196-219 (624)
456 3euj_A Chromosome partition pr 86.9 0.41 1.4E-05 52.6 4.3 28 410-438 27-54 (483)
457 2ffh_A Protein (FFH); SRP54, s 86.8 0.73 2.5E-05 49.9 6.1 35 412-446 97-134 (425)
458 2erx_A GTP-binding protein DI- 86.8 0.32 1.1E-05 44.1 2.8 22 414-435 4-25 (172)
459 1ky3_A GTP-binding protein YPT 86.7 0.38 1.3E-05 44.2 3.3 24 413-436 8-31 (182)
460 4tmk_A Protein (thymidylate ki 86.7 0.36 1.2E-05 47.1 3.3 26 413-438 3-28 (213)
461 2wjg_A FEOB, ferrous iron tran 86.7 0.31 1.1E-05 45.3 2.8 23 414-436 8-30 (188)
462 1c1y_A RAS-related protein RAP 86.6 0.36 1.2E-05 43.6 3.1 22 415-436 5-26 (167)
463 1r2q_A RAS-related protein RAB 86.6 0.37 1.3E-05 43.6 3.1 21 415-435 8-28 (170)
464 2hf9_A Probable hydrogenase ni 86.6 0.58 2E-05 45.1 4.7 26 412-437 37-62 (226)
465 1w36_D RECD, exodeoxyribonucle 86.5 0.37 1.2E-05 54.7 3.7 25 413-437 164-188 (608)
466 1qhl_A Protein (cell division 86.5 0.2 6.7E-06 49.6 1.3 23 417-439 31-53 (227)
467 1yrb_A ATP(GTP)binding protein 86.5 0.67 2.3E-05 45.9 5.2 34 412-445 13-48 (262)
468 2gj8_A MNME, tRNA modification 86.4 0.3 1E-05 45.2 2.4 25 412-436 3-27 (172)
469 1r8s_A ADP-ribosylation factor 86.4 0.38 1.3E-05 43.4 3.1 22 415-436 2-23 (164)
470 3q85_A GTP-binding protein REM 86.3 0.36 1.2E-05 43.8 2.9 21 415-435 4-24 (169)
471 1g16_A RAS-related protein SEC 86.3 0.32 1.1E-05 44.1 2.6 22 415-436 5-26 (170)
472 4ag6_A VIRB4 ATPase, type IV s 86.3 0.48 1.6E-05 50.4 4.3 34 412-445 34-70 (392)
473 3ice_A Transcription terminati 86.2 0.65 2.2E-05 49.6 5.1 28 410-437 171-198 (422)
474 3bc1_A RAS-related protein RAB 86.2 0.38 1.3E-05 44.6 3.1 23 414-436 12-34 (195)
475 2hxs_A RAB-26, RAS-related pro 86.2 0.38 1.3E-05 44.1 3.0 22 414-435 7-28 (178)
476 1fxk_C Protein (prefoldin); ar 86.1 18 0.0006 32.0 15.8 126 136-290 4-129 (133)
477 2rcn_A Probable GTPase ENGC; Y 86.1 0.41 1.4E-05 50.6 3.5 58 177-237 46-112 (358)
478 1ko7_A HPR kinase/phosphatase; 86.1 0.46 1.6E-05 49.3 3.8 24 413-436 144-167 (314)
479 3con_A GTPase NRAS; structural 85.9 0.4 1.4E-05 44.7 3.1 23 414-436 22-44 (190)
480 3qks_A DNA double-strand break 85.9 0.46 1.6E-05 45.8 3.5 26 414-439 24-49 (203)
481 4dsu_A GTPase KRAS, isoform 2B 85.8 0.42 1.4E-05 44.2 3.1 23 414-436 5-27 (189)
482 2yv5_A YJEQ protein; hydrolase 85.8 0.45 1.6E-05 48.9 3.7 60 175-236 3-68 (302)
483 2atv_A RERG, RAS-like estrogen 85.8 0.47 1.6E-05 44.6 3.5 25 412-436 27-51 (196)
484 1z0f_A RAB14, member RAS oncog 85.7 0.42 1.4E-05 43.7 3.1 23 414-436 16-38 (179)
485 2wsm_A Hydrogenase expression/ 85.6 0.41 1.4E-05 46.0 3.0 27 412-438 29-55 (221)
486 1u0l_A Probable GTPase ENGC; p 85.6 0.37 1.3E-05 49.5 2.9 27 413-439 169-195 (301)
487 3q72_A GTP-binding protein RAD 85.5 0.33 1.1E-05 43.9 2.2 21 415-435 4-24 (166)
488 2a9k_A RAS-related protein RAL 85.4 0.44 1.5E-05 43.9 3.1 23 414-436 19-41 (187)
489 3tw8_B RAS-related protein RAB 85.3 0.41 1.4E-05 43.9 2.8 22 414-435 10-31 (181)
490 2oil_A CATX-8, RAS-related pro 85.3 0.44 1.5E-05 44.6 3.0 23 414-436 26-48 (193)
491 2efe_B Small GTP-binding prote 85.3 0.46 1.6E-05 43.7 3.1 23 414-436 13-35 (181)
492 3bk7_A ABC transporter ATP-bin 85.2 0.43 1.5E-05 54.1 3.4 28 410-437 114-141 (607)
493 1w1w_A Structural maintenance 85.2 0.59 2E-05 50.5 4.3 30 410-439 23-52 (430)
494 2fn4_A P23, RAS-related protei 85.2 0.4 1.4E-05 43.9 2.6 23 414-436 10-32 (181)
495 2y8e_A RAB-protein 6, GH09086P 85.1 0.4 1.4E-05 43.9 2.6 22 414-435 15-36 (179)
496 3clv_A RAB5 protein, putative; 85.1 0.54 1.8E-05 43.8 3.5 24 413-436 7-30 (208)
497 1svi_A GTP-binding protein YSX 84.9 0.5 1.7E-05 44.2 3.2 25 412-436 22-46 (195)
498 3kkq_A RAS-related protein M-R 84.9 0.49 1.7E-05 43.7 3.1 23 414-436 19-41 (183)
499 2g6b_A RAS-related protein RAB 84.8 0.49 1.7E-05 43.4 3.1 23 414-436 11-33 (180)
500 2b6h_A ADP-ribosylation factor 84.7 0.52 1.8E-05 44.4 3.2 25 411-435 27-51 (192)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-68 Score=570.79 Aligned_cols=390 Identities=75% Similarity=1.161 Sum_probs=357.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEE
Q psy15936 124 SEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFV 203 (665)
Q Consensus 124 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~v 203 (665)
..+++.||..++++++.+++...+++++++.+++.|+++++.+++|++.++++|++||+|++++|++++||++++|++|+
T Consensus 16 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~ 95 (405)
T 4b4t_J 16 ESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYI 95 (405)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 204 VDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELN 283 (665)
Q Consensus 204 v~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~ 283 (665)
|++.+.++.+.|+||++|+||+++++|+++||+++||.+..|.
T Consensus 96 v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~------------------------------------- 138 (405)
T 4b4t_J 96 VDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMM------------------------------------- 138 (405)
T ss_dssp ECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCE-------------------------------------
T ss_pred EecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhcc-------------------------------------
Confidence 9999999999999999999999999999999999999984432
Q ss_pred HHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCc
Q psy15936 284 AKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDP 363 (665)
Q Consensus 284 e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 363 (665)
T Consensus 139 -------------------------------------------------------------------------------- 138 (405)
T 4b4t_J 139 -------------------------------------------------------------------------------- 138 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 364 ~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
++++|+++|+++||++++++++++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.
T Consensus 139 ------~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 139 ------VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp ------EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred ------ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 22456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccc
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVC 523 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc 523 (665)
++++++...|.|.+++.++.+|..|+.++|||+||||+|++++.+....++.+....+.+.+||..+||+....++
T Consensus 213 v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V---- 288 (405)
T 4b4t_J 213 VSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI---- 288 (405)
T ss_dssp EEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE----
T ss_pred EEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe----
Confidence 9999999999999999999999999999999999999999999988777778888899999999999999776544
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCH
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINL 603 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl 603 (665)
.||+|||+|+.||+|++||||||+.|+|++|+.++|.+||+.|++++++..++|+
T Consensus 289 -------------------------~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl 343 (405)
T 4b4t_J 289 -------------------------KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL 343 (405)
T ss_dssp -------------------------EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH
T ss_pred -------------------------EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH
Confidence 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchhhhchHhhhC
Q psy15936 604 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665 (665)
Q Consensus 604 ~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~~ 665 (665)
+.+|..|+||||+||.++|++|++.|+++++..|+.+||..|++++.++..+..++..+.||
T Consensus 344 ~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 344 RKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-62 Score=531.15 Aligned_cols=360 Identities=44% Similarity=0.771 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeecccc
Q psy15936 147 QNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNE 226 (665)
Q Consensus 147 ~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~ 226 (665)
++.-..+...+.++++.+..+++++.++++|++||+|+|++|++++||++++|++|+|++.+.+++..|+||++|+||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~ 152 (437)
T 4b4t_I 73 EEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHK 152 (437)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTT
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEecc
Confidence 33333344456778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccee
Q psy15936 227 SYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEV 306 (665)
Q Consensus 227 ~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~ 306 (665)
+++|+++||+++||.++.|..+
T Consensus 153 ~~~~~~~l~~~~d~~~~~~~~~---------------------------------------------------------- 174 (437)
T 4b4t_I 153 TMSIVGVLQDDADPMVSVMKMD---------------------------------------------------------- 174 (437)
T ss_dssp TCCEEEEECCCSSCCCCCCEEE----------------------------------------------------------
T ss_pred CccceeecCCccCCcceeeeec----------------------------------------------------------
Confidence 9999999999999998665433
Q ss_pred eeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChH
Q psy15936 307 VKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386 (665)
Q Consensus 307 v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~ 386 (665)
..|+++|+++||+++
T Consensus 175 -----------------------------------------------------------------~~p~v~~~DIgGld~ 189 (437)
T 4b4t_I 175 -----------------------------------------------------------------KSPTESYSDIGGLES 189 (437)
T ss_dssp -----------------------------------------------------------------SSCCCCGGGTCSCHH
T ss_pred -----------------------------------------------------------------cCCCCcceecCcHHH
Confidence 345678999999999
Q ss_pred HHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHH
Q psy15936 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFV 466 (665)
Q Consensus 387 ~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~ 466 (665)
+++.+++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.++++++...|.|.+++.++.+|.
T Consensus 190 ~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~ 269 (437)
T 4b4t_I 190 QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFK 269 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhcc
Q psy15936 467 MAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMA 546 (665)
Q Consensus 467 ~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a 546 (665)
.|+.++|||+||||+|++++.|.....+.+....+++.++|..++++....++
T Consensus 270 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V--------------------------- 322 (437)
T 4b4t_I 270 VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV--------------------------- 322 (437)
T ss_dssp HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE---------------------------
T ss_pred HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE---------------------------
Confidence 99999999999999999999998877777888899999999999998776554
Q ss_pred ccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q psy15936 547 VAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAG 626 (665)
Q Consensus 547 ~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~ 626 (665)
.||+|||+|+.||+||+||||||+.|+|+.|+.++|.+||+.|++++++..++|++.||..|+||||+||+++|++|+
T Consensus 323 --iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 323 --KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp --EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred --EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhhcchhhh
Q psy15936 627 MYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658 (665)
Q Consensus 627 ~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~~ 658 (665)
+.|+++++..|+.+||..|++++.++...+.+
T Consensus 401 ~~Air~~~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 401 LLALRERRMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHcCCCccCHHHHHHHHHHHhCCCChhhH
Confidence 99999999999999999999999987766554
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-61 Score=523.61 Aligned_cols=362 Identities=42% Similarity=0.727 Sum_probs=339.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCce
Q psy15936 141 IVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCR 220 (665)
Q Consensus 141 ~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~ 220 (665)
+.++++.+++.++.+...+++++.+.+++++.|+++|++||+|++.++++++||++++|++|+|++.+.++...|+||++
T Consensus 66 ~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~ 145 (437)
T 4b4t_L 66 EHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVR 145 (437)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCce
Confidence 34566777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15936 221 VALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQG 300 (665)
Q Consensus 221 Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~ 300 (665)
|++|+++++++++||+++||.+..|..
T Consensus 146 v~~~~~~~~~~~~l~~~~d~~~~~~~~----------------------------------------------------- 172 (437)
T 4b4t_L 146 VTLDITTLTIMRILPRETDPLVYNMTS----------------------------------------------------- 172 (437)
T ss_dssp EEECSSSCSEEEECCCCSCCCCSSCEE-----------------------------------------------------
T ss_pred eeEcccchhHHHhcCcccCchhheeee-----------------------------------------------------
Confidence 999999999999999999998754432
Q ss_pred cccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccc
Q psy15936 301 SYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM 380 (665)
Q Consensus 301 ~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~ 380 (665)
+..|+++|++
T Consensus 173 ----------------------------------------------------------------------~~~p~v~~~d 182 (437)
T 4b4t_L 173 ----------------------------------------------------------------------FEQGEITFDG 182 (437)
T ss_dssp ----------------------------------------------------------------------EESCSSCSGG
T ss_pred ----------------------------------------------------------------------ccCCCCChhH
Confidence 2345778999
Q ss_pred cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHH
Q psy15936 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM 460 (665)
Q Consensus 381 i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~ 460 (665)
+||++++++.+++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.++++++...|.|.++..
T Consensus 183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ 262 (437)
T 4b4t_L 183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARI 262 (437)
T ss_dssp GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHH
T ss_pred hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccch
Q psy15936 461 VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQ 540 (665)
Q Consensus 461 ~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~ 540 (665)
++.+|..|+.+.|||+||||+|++++.+.......+....+++.+||..++|+.....+
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v--------------------- 321 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT--------------------- 321 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS---------------------
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe---------------------
Confidence 99999999999999999999999999998777777888899999999999998776544
Q ss_pred hhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHH
Q psy15936 541 EDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKG 620 (665)
Q Consensus 541 ~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~ 620 (665)
.||+|||+|+.||+||+||||||+.|+|+.|+.++|.+||+.|++++.+..++|+..+|..|+||||+||.+
T Consensus 322 --------ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 322 --------KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN 393 (437)
T ss_dssp --------EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHH
T ss_pred --------EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc
Q psy15936 621 VCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 621 l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 654 (665)
+|++|++.|+++++..|+.+||..|++++.+...
T Consensus 394 l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 394 CATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987543
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-60 Score=518.77 Aligned_cols=368 Identities=42% Similarity=0.683 Sum_probs=346.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCccc
Q psy15936 133 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDI 212 (665)
Q Consensus 133 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~ 212 (665)
.++++++.+++.+..+.++++.+.+.+++++.++++|++.++++|++||+|+|++|++++||++++|++|+|++.+.+++
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~ 128 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDR 128 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEEEETTSCEEEECBCSSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEEecCCCCEEEEeccccccH
Confidence 45667888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 213 NDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREE 292 (665)
Q Consensus 213 ~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~ 292 (665)
+.++||++|++|+++++++.+||.++||.|..|..
T Consensus 129 ~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~--------------------------------------------- 163 (428)
T 4b4t_K 129 ELLKPSMSVALHRHSNALVDILPPDSDSSISVMGE--------------------------------------------- 163 (428)
T ss_dssp TTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEE---------------------------------------------
T ss_pred hhCCCCceeeeecchhhHHhhcCcccCcchhhccC---------------------------------------------
Confidence 99999999999999999999999999999854432
Q ss_pred HHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhcc
Q psy15936 293 LQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEK 372 (665)
Q Consensus 293 ~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~ 372 (665)
+.
T Consensus 164 ------------------------------------------------------------------------------~~ 165 (428)
T 4b4t_K 164 ------------------------------------------------------------------------------NE 165 (428)
T ss_dssp ------------------------------------------------------------------------------ES
T ss_pred ------------------------------------------------------------------------------CC
Confidence 23
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~ 452 (665)
.|+++|+|+||++++++.+++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 453 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
|.|..+..++.+|..|+.+.|||+|+||+|++++.+.....+.+....+++.+|+..++|+....++
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v------------- 312 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV------------- 312 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE-------------
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE-------------
Confidence 9999999999999999999999999999999999998877778888899999999999998765544
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeC-CCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFP-PPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~-~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
.||+|||+|+.||+|++||||||..|+|| +|+.++|..||+.+++++++..++|++.+|..|+
T Consensus 313 ----------------~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~ 376 (428)
T 4b4t_K 313 ----------------KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRND 376 (428)
T ss_dssp ----------------EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTT
T ss_pred ----------------EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCC
Confidence 69999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 612 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
||||+||.++|++|++.|+++++..|+.+||..|+.+....
T Consensus 377 G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 377 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 417 (428)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999887653
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-60 Score=522.39 Aligned_cols=374 Identities=44% Similarity=0.709 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCC------------------------
Q psy15936 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK------------------------ 189 (665)
Q Consensus 134 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~------------------------ 189 (665)
+.+.++.+++.++.+..+++.+.+.++++++.+++++..++++|++||+|+|+++.
T Consensus 33 r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
T 4b4t_M 33 RAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTA 112 (434)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcc
Confidence 34445677778888899999999999999999999999999999999999999874
Q ss_pred --CeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHH
Q psy15936 190 --KKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAE 267 (665)
Q Consensus 190 --~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~ 267 (665)
++++|++++|++|+|++.+.++++.|+||++|+||+++++|+++||+++||.++.|..+
T Consensus 113 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~------------------- 173 (434)
T 4b4t_M 113 VGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVD------------------- 173 (434)
T ss_dssp CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEE-------------------
T ss_pred cCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccC-------------------
Confidence 36899999999999999999999999999999999999999999999999998554322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 268 KEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 268 ~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
T Consensus 174 -------------------------------------------------------------------------------- 173 (434)
T 4b4t_M 174 -------------------------------------------------------------------------------- 173 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT 427 (665)
..|+.+|+++||++++++.+++.+.+|+.+|+.|..+|+.+++|+|||||||||||
T Consensus 174 ------------------------~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKT 229 (434)
T 4b4t_M 174 ------------------------EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKT 229 (434)
T ss_dssp ------------------------SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHH
T ss_pred ------------------------CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHH
Confidence 34567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 428 ~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
++|+++|.+++.+|+.++++++...|.|.+++.++.+|..|+.+.|||+||||+|++++.|.....+++....+++.+|+
T Consensus 230 llAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL 309 (434)
T 4b4t_M 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL 309 (434)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777777888899999999
Q ss_pred HhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHH
Q psy15936 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI 587 (665)
Q Consensus 508 ~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~I 587 (665)
..++++.+.+++ .||+|||+|+.||+|++||||||+.|+|++|+.++|.+|
T Consensus 310 ~~ldg~~~~~~V-----------------------------iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~I 360 (434)
T 4b4t_M 310 NQLDGFSSDDRV-----------------------------KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI 360 (434)
T ss_dssp HHHTTSCSSCSS-----------------------------EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHH
T ss_pred HHhhccCCCCCE-----------------------------EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHH
Confidence 999999776654 699999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchhhhch
Q psy15936 588 LRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI 660 (665)
Q Consensus 588 l~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~~~~ 660 (665)
|+.|++++.+..++|++.||..|+||||+||.++|++|++.|+++++..|+.+||..|++++.++.+ +.+++
T Consensus 361 l~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~-~~i~~ 432 (434)
T 4b4t_M 361 LQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKS-KSVSF 432 (434)
T ss_dssp HHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCC-CCCCC
T ss_pred HHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCC-cCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988654 33443
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-57 Score=495.99 Aligned_cols=330 Identities=51% Similarity=0.853 Sum_probs=309.6
Q ss_pred HhcCceeEEEEEEe----------------------------------CCCeEEEEEeCCCeEEEEcCCCcccCCCCCCc
Q psy15936 174 QEQGSYVGEVVKPM----------------------------------DKKKVLVKVHPEGKFVVDIDKNIDINDVTPNC 219 (665)
Q Consensus 174 ~~~pl~vg~v~eil----------------------------------~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~ 219 (665)
+..|+.|+++.+++ +++++||++++|++|+|++++.+++++|+||+
T Consensus 93 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~ 172 (467)
T 4b4t_H 93 EEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGM 172 (467)
T ss_dssp --CCSSSEEEEECCCC--------------------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTC
T ss_pred cccchhHhhhHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCC
Confidence 47899999999998 35689999999999999999999999999999
Q ss_pred eeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15936 220 RVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQ 299 (665)
Q Consensus 220 ~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~ 299 (665)
+|+||+++++|+.+||+++||.|++|.+|+
T Consensus 173 ~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e-------------------------------------------------- 202 (467)
T 4b4t_H 173 RVGVDRSKYNIELPLPPRIDPSVTMMTVEE-------------------------------------------------- 202 (467)
T ss_dssp EECSCTTSCCCCCSSCSSSCCCCCCCEEES--------------------------------------------------
T ss_pred EEEEccCcceeeecCCCccCCccceeeecC--------------------------------------------------
Confidence 999999999999999999999997665443
Q ss_pred CcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCcc
Q psy15936 300 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE 379 (665)
Q Consensus 300 ~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~ 379 (665)
.|+++|+
T Consensus 203 -------------------------------------------------------------------------~P~vt~~ 209 (467)
T 4b4t_H 203 -------------------------------------------------------------------------KPDVTYS 209 (467)
T ss_dssp -------------------------------------------------------------------------SCSCCCS
T ss_pred -------------------------------------------------------------------------CCCCCHH
Confidence 4567889
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchH
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~ 459 (665)
++||+++++++|++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.++++++...|.|.+++
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek 289 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGAR 289 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccc
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVT 539 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~ 539 (665)
.++.+|..|+.++|||+||||+|.++..|.....+.+....+.+.++|..++++.....+
T Consensus 290 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V-------------------- 349 (467)
T 4b4t_H 290 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI-------------------- 349 (467)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE--------------------
T ss_pred HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE--------------------
Confidence 999999999999999999999999999998777777888889999999999998766544
Q ss_pred hhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHH
Q psy15936 540 QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVK 619 (665)
Q Consensus 540 ~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~ 619 (665)
.||+|||+|+.||+|++||||||+.|+|+.|+.++|.+||+.|++++++..++|++.||..|+||||+||+
T Consensus 350 ---------iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~ 420 (467)
T 4b4t_H 350 ---------KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR 420 (467)
T ss_dssp ---------EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHH
T ss_pred ---------EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcch
Q psy15936 620 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655 (665)
Q Consensus 620 ~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~ 655 (665)
++|++|++.|+++++..|+.+||..|+++++.....
T Consensus 421 ~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 421 SVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999876543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.4e-53 Score=492.82 Aligned_cols=363 Identities=30% Similarity=0.526 Sum_probs=267.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCC
Q psy15936 269 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPN 341 (665)
Q Consensus 269 ~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~ 341 (665)
|++|+|++.+++++++.|.+|+.+|+.|+..|+.+|+|+ |||||||+++++ +.+..|+...++++..+|.|++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ges 282 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHH
Confidence 445555889999999999999999999999999999998 999999999988 5567888888888888888776
Q ss_pred ceEEecccchhhhhhcCCCCCcchhhhhh---------------------------------------------------
Q psy15936 342 CRVALRNESYTLHKILPNKVDPLVSLMMV--------------------------------------------------- 370 (665)
Q Consensus 342 ~~~~l~~~~~~l~~~~~~~~~~~i~~~ei--------------------------------------------------- 370 (665)
.+.+ +.+|..+....||++|+|++
T Consensus 283 e~~l-----r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 283 ESNL-----RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp HHHH-----HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred HHHH-----HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 5533 33333333333333222221
Q ss_pred --------------------------------------------------------------------------------
Q psy15936 371 -------------------------------------------------------------------------------- 370 (665)
Q Consensus 371 -------------------------------------------------------------------------------- 370 (665)
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~ 437 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence
Q ss_pred -------------------------------ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEe
Q psy15936 371 -------------------------------EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419 (665)
Q Consensus 371 -------------------------------d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~ 419 (665)
..+|..+|++++|++++++.+++.+.+|+.+++.|..+|..+++++|||
T Consensus 438 ~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~ 517 (806)
T 3cf2_A 438 DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFY 517 (806)
T ss_dssp SHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEE
T ss_pred chhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEe
Confidence 1245678999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHH
Q psy15936 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 499 (665)
Q Consensus 420 GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~ 499 (665)
||||||||++|+++|.+++.+|+.+.++++..+|.|.+++.++.+|..|+.+.|||+||||||++++.|....+..+...
T Consensus 518 GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~ 597 (806)
T 3cf2_A 518 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAA 597 (806)
T ss_dssp SSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------
T ss_pred cCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865544444556
Q ss_pred HHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCC
Q psy15936 500 QRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPP 579 (665)
Q Consensus 500 ~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P 579 (665)
.+.+.+||.+++|+....++ .||+|||+|+.||+|++||||||..|+|++|
T Consensus 598 ~rv~~~lL~~mdg~~~~~~V-----------------------------~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 598 DRVINQILTEMDGMSTKKNV-----------------------------FIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp CHHHHHHHHHHHSSCSSSSE-----------------------------EEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred HHHHHHHHHHHhCCCCCCCE-----------------------------EEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 68899999999998766544 6999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc-------------------------C
Q psy15936 580 NEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-------------------------R 634 (665)
Q Consensus 580 ~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~-------------------------~ 634 (665)
+.++|.+||+.+++++++..++|++.||..|+||||+||.++|++|++.|+++. .
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------C
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999862 1
Q ss_pred CCCCHHHHHHHHHHHhhhcchhhhchHhhhC
Q psy15936 635 VHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665 (665)
Q Consensus 635 ~~It~~d~~~Al~~~~~~~~~~~~~~~~~~~ 665 (665)
..|+.+||.+|++.+.++.+.+.+..|+.|.
T Consensus 729 ~~i~~~df~~al~~~~pSvs~~~l~~y~~~~ 759 (806)
T 3cf2_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp CC----CCTTTC---------------CCCC
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 2599999999999999999999999999883
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-37 Score=358.84 Aligned_cols=252 Identities=39% Similarity=0.733 Sum_probs=230.1
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
-...+.++|++++|++++++++++++.+|+.+|+.|..+|+.+|+|||||||||||||++|+++|++++.+++.++++++
T Consensus 195 ~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp SCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred cccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
...+.|..+..++.+|..|+.+.|+|+||||||.+++++....+ ....+.+.+|+..++++.....+
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~---~~~~riv~~LL~~mdg~~~~~~V---------- 341 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHV---------- 341 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC---TTHHHHHHHHHTHHHHCCGGGCE----------
T ss_pred hcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC---hHHHHHHHHHHHHHhcccccCCE----------
Confidence 99999999999999999999999999999999999988754332 23456788899999887654433
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~ 609 (665)
.||+|||+++.||++++|||||++.|+++.|+.++|.+||+.+++++.+..++|+..+|..
T Consensus 342 -------------------~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~ 402 (806)
T 3cf2_A 342 -------------------IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp -------------------EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHH
T ss_pred -------------------EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHh
Confidence 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCCCHHHHHHHHHHHhhhc
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~-----------------~~~It~~d~~~Al~~~~~~~ 653 (665)
|+||+|+||..+|++|++.|+++. ...++.+||..|++.+.+..
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 999999999999999999998762 13588899999998887643
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.8e-35 Score=308.62 Aligned_cols=266 Identities=38% Similarity=0.709 Sum_probs=233.6
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
+..+|+.+|++++|++.+++.+++.+.+|+.+++.|..+|+.++.++||+||||||||++|+++|..++.+++.+++.++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
...+.|.....++.+|..+....|+++|+||+|.+...+............+.+.+++..+++.....++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v---------- 155 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV---------- 155 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE----------
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE----------
Confidence 9999999888999999999999999999999999887653322111112234566777777765433222
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~ 609 (665)
.||+|||+++.++++++|+|||+..++++.|+.++|.+|++.+++..++..++++..++..
T Consensus 156 -------------------~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~ 216 (301)
T 3cf0_A 156 -------------------FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 216 (301)
T ss_dssp -------------------EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT
T ss_pred -------------------EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH
Confidence 6999999999999999999999999999999999999999999999888888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRER-------------------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~-------------------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
+.||+|+||.++|++|++.|.++. ...|+.+||..|++.+.++.+...+..++.|
T Consensus 217 ~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~ 296 (301)
T 3cf0_A 217 TNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 296 (301)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999987642 1369999999999999999999888888888
No 10
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5.3e-39 Score=379.11 Aligned_cols=263 Identities=38% Similarity=0.713 Sum_probs=216.0
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~ 452 (665)
.+...|++++|++..++.+.+.+.+|+.+++.|..+++.++.++||+||||||||++|+++|..++.++++++++++...
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 453 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
|.+..+..++.+|+.++...|+++|+||||++...+.......+....+.+.+|+..++++....++
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v------------- 617 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV------------- 617 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CC-------------
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCe-------------
Confidence 9999999999999999999999999999999988774433333345667888999999887544333
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.||+|||+++.+|++++|||||+..|+|+.|+.++|.+||+.+++..++..++++..++..+.|
T Consensus 618 ----------------~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g 681 (806)
T 1ypw_A 618 ----------------FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681 (806)
T ss_dssp ----------------BCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSS
T ss_pred ----------------EEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccc
Confidence 5899999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcC-------------------------CCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 613 ASGAEVKGVCTEAGMYALRERR-------------------------VHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~-------------------------~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
||++||..+|++|++.|+++.- ..|+.+||..|++.+.++.+.+.+..++.|
T Consensus 682 ~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~ 758 (806)
T 1ypw_A 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758 (806)
T ss_dssp SCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC----------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999987631 258999999999999898888888888887
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=297.58 Aligned_cols=254 Identities=39% Similarity=0.678 Sum_probs=206.4
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
.+|+.+|++++|++++++.+++.+.+|+.+++.|+.+++..++|++|+||||||||+|++++|..++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.+.+...+.++.+|+.+....|+++++||+|.+...+..... ....+.+.+++..+++......+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~------------ 147 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQV------------ 147 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCE------------
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCE------------
Confidence 777888888999999988889999999999988765432111 11234567778888776433211
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc---CCCCCCCCHHHHHH
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK---MNLTRGINLRKIAE 608 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~---~~~~~~vdl~~la~ 608 (665)
.++++||+|+.+|++++||||||+.|+++.|+.++|.+||+.+++. ..+..++++..+|.
T Consensus 148 -----------------i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 148 -----------------FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp -----------------EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred -----------------EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 6899999999999999999999999999999999999999999854 45667899999999
Q ss_pred HC--CCCCHHHHHHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHhhhcchhh
Q psy15936 609 LM--PGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFEMAVAKVMQKDSEKN 657 (665)
Q Consensus 609 ~t--~g~s~~dl~~l~~~A~~~A~~~~-----------~~~It~~d~~~Al~~~~~~~~~~~ 657 (665)
.+ +||||+||..+|++|++.|+++. ...|+.+||..|++++.++...+.
T Consensus 211 ~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~~ 272 (274)
T 2x8a_A 211 DLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272 (274)
T ss_dssp CSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC----
T ss_pred hhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCChhh
Confidence 75 59999999999999999998752 347999999999999988766543
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=297.22 Aligned_cols=259 Identities=34% Similarity=0.560 Sum_probs=229.2
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-CCceEEEechhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVSGSEL 449 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-~~~lirv~~~dl 449 (665)
...|+.+|++++|++++++.+++.+.+|+.+++.|.. +..+++++||+||||||||++|+++|..+ +.+++.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4678899999999999999999999999999999984 35677999999999999999999999999 899999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc-cCccccccccchh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKGVCTEAGM 528 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~-~~~i~~vc~eAg~ 528 (665)
...+.+..+..++.+|..+....|+++||||+|.+.+.+... ......+.+.+++..++++.. ...+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v--------- 150 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGI--------- 150 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTE---------
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCE---------
Confidence 999999999999999999999999999999999998876433 233456677889998888642 1212
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIA 607 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la 607 (665)
.||+|||+++.+|++++| ||+..+.++.|+.++|.+|++.+++..+.. .+.++..|+
T Consensus 151 --------------------~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la 208 (322)
T 1xwi_A 151 --------------------LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELG 208 (322)
T ss_dssp --------------------EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHH
T ss_pred --------------------EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 699999999999999999 999999999999999999999999887654 567899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc-------------------------------------------------CCCCC
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRER-------------------------------------------------RVHVT 638 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~-------------------------------------------------~~~It 638 (665)
..+.||+|+||..+|++|++.|+++. ...|+
T Consensus 209 ~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (322)
T 1xwi_A 209 RKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVS 288 (322)
T ss_dssp HTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcC
Confidence 99999999999999999999998762 12699
Q ss_pred HHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 639 QEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 639 ~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
.+||..|++.+.++.+.+.+..++.|
T Consensus 289 ~~df~~al~~~~ps~~~~~~~~~~~~ 314 (322)
T 1xwi_A 289 MSDMLRSLSNTKPTVNEHDLLKLKKF 314 (322)
T ss_dssp HHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 99999999999999999999988888
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-32 Score=286.42 Aligned_cols=256 Identities=60% Similarity=1.019 Sum_probs=236.8
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
.++..++.+|++++|.+++++.+.+.+..++.+++.|..+|..++.++||+||||||||++|+++|..++.+++.+++.+
T Consensus 7 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp EEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchh
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGM 528 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~ 528 (665)
+...+.+.....+..+|..+....|+++||||+|.+.+.+.+...+.+...+..+..++..++++.....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~--------- 157 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDV--------- 157 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSE---------
T ss_pred HHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCE---------
Confidence 98888888888999999999999999999999999988877666667778889999999998876544333
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~ 608 (665)
.||+|||.++.+++++++++||+..+.++.|+.++|.+|++.+++...+..++++..++.
T Consensus 158 --------------------~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 3h4m_A 158 --------------------KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK 217 (285)
T ss_dssp --------------------EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred --------------------EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 699999999999999999999999999999999999999999999998888899999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
.+.|++++++..+|+.|...|..++...|+.+||..|++++....
T Consensus 218 ~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 218 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999998653
No 14
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.5e-32 Score=304.80 Aligned_cols=250 Identities=39% Similarity=0.725 Sum_probs=222.4
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~ 452 (665)
.+...|++++|.+.+++++++++..++.+++.|..+|..++.++||+||||||||++|++++..++.+|+.++|.++...
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 453 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
+.+.....++.+|..+....|+++||||||.+.+.+.... .....+.+.+|+..+++.....++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~~~~~v------------- 341 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHV------------- 341 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSCTTSCE-------------
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccccCCce-------------
Confidence 9999999999999999999999999999999988764322 223345566677766655333222
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
+||+|||+++.++++++++|||+..+.|+.|+.++|.+||+.+++.+.+..++++..++..+.|
T Consensus 342 ----------------~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g 405 (489)
T 3hu3_A 342 ----------------IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405 (489)
T ss_dssp ----------------EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTT
T ss_pred ----------------EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccC
Confidence 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHhhhcc
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRV-----------------HVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~-----------------~It~~d~~~Al~~~~~~~~ 654 (665)
|+++||..+|++|++.|+++... .|+.+||..|++.+.+...
T Consensus 406 ~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 406 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 99999999999999999987532 5899999999999987644
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.5e-32 Score=304.46 Aligned_cols=250 Identities=47% Similarity=0.788 Sum_probs=221.6
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 452 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~ 452 (665)
.+..+|++++|.+++++++++.+.. +.++..|..+|...++++||+||||||||++|+++|..++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567899999999999999999887 778899999999999999999999999999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 453 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
+.+.....++.+|..+..+.|+++||||+|.+...+.....+.+....+.+.+|+..++++....++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v------------- 155 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI------------- 155 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE-------------
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE-------------
Confidence 8888888899999999999999999999999988776555566667778899999999876543322
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g 612 (665)
.||++||+++.+|++++|||||++.|.++.|+.++|.+|++.+++..++..++++..++..+.|
T Consensus 156 ----------------iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G 219 (476)
T 2ce7_A 156 ----------------IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPG 219 (476)
T ss_dssp ----------------EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred ----------------EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCC
Confidence 6999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 613 ~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
++|+||.++|++|+..|.+++...|+.+||..|+.++...
T Consensus 220 ~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 220 FVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 9999999999999999998888899999999999998754
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=6.3e-32 Score=276.97 Aligned_cols=252 Identities=42% Similarity=0.712 Sum_probs=220.9
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
+..+...|++++|.+..++.+.+.+.. +.+++.|..+|...+.+++|+||||||||++|++++..++.+++.+++.++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456778999999999999999998876 7788888989999999999999999999999999999999999999999988
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
..+.+.....++.+|+.+....|+++++||+|.+...+.....+......+.+.+++..++++.....+
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~----------- 151 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI----------- 151 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE-----------
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE-----------
Confidence 888888888899999999888899999999999988765444445555667788888888876544333
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHC
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t 610 (665)
.||++||+++.++++++++|||++.+.++.|+.++|.+|++.+++..++..++++..++..+
T Consensus 152 ------------------~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~ 213 (257)
T 1lv7_A 152 ------------------IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT 213 (257)
T ss_dssp ------------------EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC
T ss_pred ------------------EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHc
Confidence 69999999999999999999999999999999999999999999998888899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 611 ~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
.||+++||.++|++|...|..++...|+.+||..|++++...
T Consensus 214 ~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 214 PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 999999999999999999999988999999999999988643
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-32 Score=292.48 Aligned_cols=260 Identities=35% Similarity=0.581 Sum_probs=224.6
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
+...|+.+|++++|++.+++.+++++.+|+.+++.|.. +..++.++||+||||||||++|+++|..++.+++.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 56788999999999999999999999999999999886 55678899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc-cCccccccccchh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKGVCTEAGM 528 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~-~~~i~~vc~eAg~ 528 (665)
...+.+.....++.+|..+....|+++||||||.+.+.+........ .+...+++..+++... ...+
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~v--------- 155 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS---RRIKTELLVQMNGVGNDSQGV--------- 155 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCT---HHHHHHHHHHHGGGGTSCCCE---------
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHH---HHHHHHHHHHhccccccCCce---------
Confidence 99999999999999999999999999999999999887644333332 3445666776665531 1111
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIA 607 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la 607 (665)
.||+|||.++.+++++++ ||+..+.++.|+.++|.+|++.+++..+.. .+.++..++
T Consensus 156 --------------------~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la 213 (322)
T 3eie_A 156 --------------------LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLG 213 (322)
T ss_dssp --------------------EEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred --------------------EEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 699999999999999999 999999999999999999999999887754 566799999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhcC-------------------------------------------CCCCHHHHHH
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRERR-------------------------------------------VHVTQEDFEM 644 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~~-------------------------------------------~~It~~d~~~ 644 (665)
..+.||+++||..+|++|.+.|+++.. ..|+.+||..
T Consensus 214 ~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~ 293 (322)
T 3eie_A 214 AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLK 293 (322)
T ss_dssp HTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHH
Confidence 999999999999999999999988631 3599999999
Q ss_pred HHHHHhhhcchhhhchHhhh
Q psy15936 645 AVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 645 Al~~~~~~~~~~~~~~~~~~ 664 (665)
|++.+.++.+.+.+.-++.|
T Consensus 294 al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 294 AIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp HHHHSCCSSCTTHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH
Confidence 99999999998888888887
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=4.7e-32 Score=291.67 Aligned_cols=260 Identities=35% Similarity=0.576 Sum_probs=218.4
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
....++.+|++++|++.+++.+++++.+|+.+++.|.. +..++.++||+||||||||++|+++|..++.+++.+++.++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 45678899999999999999999999999999999986 56778899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc-cCccccccccchh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKGVCTEAGM 528 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~-~~~i~~vc~eAg~ 528 (665)
...+.+.....++.+|..+....|+|+||||+|.+.+.+... ......+...+++..+++... ...+
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v--------- 188 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGV--------- 188 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCE---------
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCe---------
Confidence 988999999999999999998999999999999998766332 223345556777777776532 1111
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIA 607 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la 607 (665)
.||+|||+++.++++++| ||+..+.+++|+.++|.+||+.++...+.. .+.++..|+
T Consensus 189 --------------------~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la 246 (355)
T 2qp9_X 189 --------------------LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG 246 (355)
T ss_dssp --------------------EEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH
T ss_pred --------------------EEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 699999999999999999 999999999999999999999999887653 567899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc-------------------------------------------CCCCCHHHHHH
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRER-------------------------------------------RVHVTQEDFEM 644 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~-------------------------------------------~~~It~~d~~~ 644 (665)
..+.||+|+||..+|++|++.|+++. ...|+.+||..
T Consensus 247 ~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~ 326 (355)
T 2qp9_X 247 AMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLK 326 (355)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHH
Confidence 99999999999999999999998762 13599999999
Q ss_pred HHHHHhhhcchhhhchHhhh
Q psy15936 645 AVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 645 Al~~~~~~~~~~~~~~~~~~ 664 (665)
|++.+.|+.+.+.+..++.|
T Consensus 327 Al~~~~ps~~~~~~~~~~~~ 346 (355)
T 2qp9_X 327 AIKSTRPTVNEDDLLKQEQF 346 (355)
T ss_dssp HHHHSCCSSCHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999888888
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=5.2e-31 Score=291.66 Aligned_cols=261 Identities=34% Similarity=0.554 Sum_probs=219.7
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-CCceEEEechh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVSGSE 448 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-~~~lirv~~~d 448 (665)
+...|+.+|++++|++.+++.+++.+.+|+.+++.|.. +..++.++||+||||||||++|+++|..+ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 44678899999999999999999999999999999874 34677999999999999999999999999 89999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc-cCccccccccch
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKGVCTEAG 527 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~-~~~i~~vc~eAg 527 (665)
+...+.|.....++.+|..+....|+|+||||||.+.+.+... ......+.+.+++..+++... ...+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v-------- 272 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGI-------- 272 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSC--------
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCE--------
Confidence 9999999888889999999999999999999999998776433 233345667888888887642 1212
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHH
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKI 606 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~l 606 (665)
.||+|||+++.++++++| ||+..+.++.|+.++|..||+.++...+.. .+.++..|
T Consensus 273 ---------------------~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l 329 (444)
T 2zan_A 273 ---------------------LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQEL 329 (444)
T ss_dssp ---------------------EEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHH
T ss_pred ---------------------EEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 699999999999999999 999999999999999999999999887653 56789999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc-------------------------------------------------CCCC
Q psy15936 607 AELMPGASGAEVKGVCTEAGMYALRER-------------------------------------------------RVHV 637 (665)
Q Consensus 607 a~~t~g~s~~dl~~l~~~A~~~A~~~~-------------------------------------------------~~~I 637 (665)
+..+.||+|+||..+|++|++.|+++. ...|
T Consensus 330 a~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 409 (444)
T 2zan_A 330 GRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVV 409 (444)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCcc
Confidence 999999999999999999999998751 1268
Q ss_pred CHHHHHHHHHHHhhhcchhhhchHhhhC
Q psy15936 638 TQEDFEMAVAKVMQKDSEKNMSIKKLWK 665 (665)
Q Consensus 638 t~~d~~~Al~~~~~~~~~~~~~~~~~~~ 665 (665)
+.+||..|++.+.|+.+.+.+..++.|.
T Consensus 410 ~~~df~~a~~~~~ps~~~~~~~~~~~~~ 437 (444)
T 2zan_A 410 SMWDMLRSLSSTKPTVNEQDLLKLKKFT 437 (444)
T ss_dssp EHHHHHHHHHTCCCSCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999883
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1e-30 Score=291.30 Aligned_cols=250 Identities=46% Similarity=0.758 Sum_probs=223.7
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
+..+|++++|.++.+.++++.+.. +.++..|..+|+..+++++|+||||||||+||+++|..++.+++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678899999999999999998876 7778889999999999999999999999999999999999999999999988888
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE 533 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~ 533 (665)
.+.....++.+|+.+....|+++|+||||.+...+.....+.+.+..+.+.+++..++++.....+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v-------------- 170 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI-------------- 170 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC--------------
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE--------------
Confidence 887777888999988777899999999999987664433445667778889999999876543322
Q ss_pred hhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCC
Q psy15936 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGA 613 (665)
Q Consensus 534 ~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~ 613 (665)
.++++||+|+.+|++++|||||++.|.|+.|+.++|.+||+.++++..+..++++..+|..+.|+
T Consensus 171 ---------------iviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 171 ---------------VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp ---------------EEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSC
T ss_pred ---------------EEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999999999999999988888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 614 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 614 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
+|+||+++|++|+..|.+++...|+.+||..|++++....
T Consensus 236 ~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 236 VGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhccc
Confidence 9999999999999999888888999999999999997653
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=7.3e-31 Score=268.71 Aligned_cols=253 Identities=40% Similarity=0.687 Sum_probs=196.7
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~ 453 (665)
|+..|++++|.+..++.+++++.. +.+++.|...|...+.++||+||||||||++|+++|+.++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998877 7788889999999999999999999999999999999999999999999988888
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCC-CChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 454 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSG-GDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 454 ~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~-~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
.+.....+..+|..+....|++++|||+|.+...+.....+ .+...+..+..++..+++......+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~------------- 146 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV------------- 146 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE-------------
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE-------------
Confidence 88888888999999988889999999999987665332211 1334456678888887775433222
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCC--HHHHHHHC
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN--LRKIAELM 610 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vd--l~~la~~t 610 (665)
.+|+|||.++.++++++++|||+..++|++|+.++|.+|++.++...++..+.+ ...++..+
T Consensus 147 ----------------~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~ 210 (262)
T 2qz4_A 147 ----------------IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELT 210 (262)
T ss_dssp ----------------EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTC
T ss_pred ----------------EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHC
Confidence 689999999999999999999999999999999999999999999887765544 47899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchh
Q psy15936 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656 (665)
Q Consensus 611 ~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~ 656 (665)
.|+++++|..+|++|+..|.+++...|+.+||..|++++.+....+
T Consensus 211 ~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 211 PGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKK 256 (262)
T ss_dssp TTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhh
Confidence 9999999999999999999988888999999999999998765443
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=1.3e-29 Score=259.24 Aligned_cols=247 Identities=45% Similarity=0.762 Sum_probs=210.4
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
+...|..+|++++|.++.+.++++.... +.++..+..+++..+.+++|+||||||||+++++++..++..++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456788999999999999999988776 567788999999999999999999999999999999999999999999888
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
...+.+.....+..+|+.+....|+++++||+|.+...+.....+.+.+..+.+.+++..+++......+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~---------- 155 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI---------- 155 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE----------
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE----------
Confidence 7777777677788899988777899999999998876653322234455667788888888875432211
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~ 609 (665)
.++++||.|+.+|++++|++||+..+.++.|+.++|.+||+.+++...+..++++..++..
T Consensus 156 -------------------i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~ 216 (254)
T 1ixz_A 156 -------------------VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 216 (254)
T ss_dssp -------------------EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT
T ss_pred -------------------EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHH
Confidence 5889999999999999999999999999999999999999999998888889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 610 t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+.|++++||.++|++|+..|.+++...|+.+||.+|+
T Consensus 217 ~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 217 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 9999999999999999999998888899999999885
No 23
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=2.5e-28 Score=253.41 Aligned_cols=246 Identities=46% Similarity=0.763 Sum_probs=209.9
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
...+..+|++++|.++.++++++.... +..+..+..+++..+.+++|+||||||||+++++++..++..++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 344788999999999999999988776 5677889999999999999999999999999999999999999999999887
Q ss_pred hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 451 ~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
..+.+.....+..+|+.+....|+++++||+|.+...+.........+..+.+.+++..+++......+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~----------- 179 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI----------- 179 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE-----------
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE-----------
Confidence 777666667788899998877899999999998876553222233455667788888888775432211
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHC
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t 610 (665)
.++++||.|+.+|++++|++||+..++|+.|+.++|.+||+.+++...+..++++..++..+
T Consensus 180 ------------------i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~ 241 (278)
T 1iy2_A 180 ------------------VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT 241 (278)
T ss_dssp ------------------EEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC
T ss_pred ------------------EEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHc
Confidence 58899999999999999999999999999999999999999999988888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 611 ~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+|++++||.++|++|+..|..++...|+.+||.+|+
T Consensus 242 ~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 242 PGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999999999998888899999999886
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=6.4e-29 Score=267.39 Aligned_cols=263 Identities=34% Similarity=0.568 Sum_probs=221.7
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
.++..++..|++++|.+.+++.+++.+.+|+.+++.|...+ .++.++||+||||||||++|+++|..++.+++.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 35667889999999999999999999999988998887665 67889999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchh
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGM 528 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~ 528 (665)
+...+.+.....++.+|..+....|+++||||||.+...+.. +.+....+.+.+++..+++......
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~---------- 219 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSE---------- 219 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CC----------
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCC----------
Confidence 988888888888999999998889999999999999876532 2233445667778887776532110
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHH
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIA 607 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la 607 (665)
....||+|||.++.+++++++ ||+..+.++.|+.++|.+|++.++...+.. .+.++..++
T Consensus 220 -----------------~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la 280 (357)
T 3d8b_A 220 -----------------DRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIV 280 (357)
T ss_dssp -----------------CCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHH
T ss_pred -----------------CCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 011689999999999999999 999999999999999999999998776543 345688999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 608 ELMPGASGAEVKGVCTEAGMYALRER------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 608 ~~t~g~s~~dl~~l~~~A~~~A~~~~------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
..+.||+++||..+|+.|+..++++. ...|+.+||..|++.+.++...+.+..++.|
T Consensus 281 ~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~ 349 (357)
T 3d8b_A 281 QQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349 (357)
T ss_dssp HHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999998853 3579999999999999999888888888888
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=3.9e-29 Score=261.35 Aligned_cols=263 Identities=34% Similarity=0.572 Sum_probs=217.2
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
++..++..|++++|.+.+++.+++.+..|+.+++.|...+ .++.++||+||||||||++|++++..++.+++.++++++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 4566788999999999999999999999988999888665 567899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
...+.+......+.+|..+....|+++|+||+|.+...+......... +....++..+++......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~----------- 156 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASR---RLKTEFLVEFDGLPGNPD----------- 156 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSH---HHHHHHHHHHHHCC---------------
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHH---HHHHHHHHHHhcccccCC-----------
Confidence 888888888889999999998999999999999998766433222222 334455555554432110
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAE 608 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~ 608 (665)
.....||++||.++.+++++++ ||+..+.++.|+.++|..|++.++...+.. .+.++..++.
T Consensus 157 ---------------~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~ 219 (297)
T 3b9p_A 157 ---------------GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219 (297)
T ss_dssp -----------------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHH
T ss_pred ---------------CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 0011689999999999999999 999999999999999999999999876543 3445888999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRER------------RVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~------------~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
.+.|++++++..+|+.|+..|+++. ...|+.+||..|++.+.++...+.+..++.|
T Consensus 220 ~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~ 287 (297)
T 3b9p_A 220 ITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287 (297)
T ss_dssp HTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999998874 2579999999999999988888888888888
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=1.4e-30 Score=268.29 Aligned_cols=255 Identities=40% Similarity=0.712 Sum_probs=209.4
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
..+...|++++|.+..++.+++.+.. +.+++.|..+|...+.++||+||||||||++|+++|..++.+++.+++.++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34577899999999999999998876 88899999999999999999999999999999999999999999999998887
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCC-CCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG-SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~-~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
.+.+.....++.+|..+....|+++||||+|.+...+.... ...+....+.+.+++..+++.....
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------------- 149 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN------------- 149 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC-------------
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC-------------
Confidence 77777666677888888888899999999999876542111 0111111123445555555442211
Q ss_pred hhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHC
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t 610 (665)
....||+|||.++.++++++++|||+..+.|+.|+.++|.+||+.+++...+..++++..++..+
T Consensus 150 ---------------~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~ 214 (268)
T 2r62_A 150 ---------------APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLT 214 (268)
T ss_dssp ---------------SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSS
T ss_pred ---------------CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHc
Confidence 11269999999999999999999999999999999999999999999988888888899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcch
Q psy15936 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655 (665)
Q Consensus 611 ~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~ 655 (665)
.|++|+||.++|++|...|..++...|+.+||..|++++.+....
T Consensus 215 ~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 215 AGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp CSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcchh
Confidence 999999999999999999988777899999999999888775443
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=8.3e-28 Score=261.57 Aligned_cols=267 Identities=33% Similarity=0.561 Sum_probs=212.7
Q ss_pred hhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 365 VSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 365 i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+.-..++..++..|++++|.+.+++.+.+.+..++.+++.|...+ .++.++||+||||||||++|+++|..++.+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 334456677889999999999999999999999888888888776 4578999999999999999999999999999999
Q ss_pred echhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccc
Q psy15936 445 SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCT 524 (665)
Q Consensus 445 ~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~ 524 (665)
++.++...+.+.....++.+|..+....|+++||||||.+...+...... ...+.+.+++..+++......
T Consensus 180 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~------ 250 (389)
T 3vfd_A 180 SAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGD------ 250 (389)
T ss_dssp CSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------C---THHHHHHHHHHHHHHHC----------
T ss_pred eHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccch---HHHHHHHHHHHHhhcccccCC------
Confidence 99999999999999999999999999999999999999997765332222 234445566666654432110
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCH
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINL 603 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl 603 (665)
....||+|||+++.+++++++ ||+..+.|+.|+.++|.+||+.++...+.. .+.++
T Consensus 251 ---------------------~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~ 307 (389)
T 3vfd_A 251 ---------------------DRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 307 (389)
T ss_dssp ----------------------CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHH
T ss_pred ---------------------CCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 011689999999999999999 999999999999999999999998876543 33468
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHh------------cCCCCCHHHHHHHHHHHhhhcchhhhchHhhh
Q psy15936 604 RKIAELMPGASGAEVKGVCTEAGMYALRE------------RRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 664 (665)
Q Consensus 604 ~~la~~t~g~s~~dl~~l~~~A~~~A~~~------------~~~~It~~d~~~Al~~~~~~~~~~~~~~~~~~ 664 (665)
..++..+.|+++++|..+|+.|+..++++ ....|+.+||..+++.+.+....+.+..++.|
T Consensus 308 ~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~ 380 (389)
T 3vfd_A 308 AQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRW 380 (389)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999987 23579999999999999888777777777776
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=1.2e-24 Score=256.73 Aligned_cols=249 Identities=40% Similarity=0.738 Sum_probs=218.2
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
..+...|++++|.+.+++++++++.+|+.+++.|+.+++.++.+++|+||||||||++|++++..++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+..++..+++......+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v------------ 341 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHV------------ 341 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCC------------
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccE------------
Confidence 8889889999999999999999999999999988765322 2233345566777777776443322
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMP 611 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~ 611 (665)
.+|++||+++.+++++++++||+..+.++.|+.++|.+|++.+++.+.+..+.++..++..+.
T Consensus 342 -----------------~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~ 404 (806)
T 1ypw_A 342 -----------------IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (806)
T ss_dssp -----------------EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCS
T ss_pred -----------------EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhc
Confidence 689999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHhhh
Q psy15936 612 GASGAEVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 612 g~s~~dl~~l~~~A~~~A~~~~~-----------------~~It~~d~~~Al~~~~~~ 652 (665)
||+++++..+|++|+..++++.. ..++.+||..++....+.
T Consensus 405 g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 405 GHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred CcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCch
Confidence 99999999999999998877532 346777888888776543
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.7e-27 Score=252.54 Aligned_cols=338 Identities=20% Similarity=0.283 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCceeEEEEEEeCCCeEEEEEeC---------CC
Q psy15936 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLL----QEQGSYVGEVVKPMDKKKVLVKVHP---------EG 200 (665)
Q Consensus 134 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l----~~~pl~vg~v~eil~~~~~iVk~~~---------~~ 200 (665)
++......++.++.+...++.+...+++++..+++.-... +.+.- -.-++..-.+.+++|...+ |.
T Consensus 33 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~-~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~ 111 (405)
T 4b4t_J 33 KIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSD-KKVLVKVQPEGKYIVDVAKDINVKDLKASQ 111 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTT-SCEEEEESSSCEEEECCCTTSCTTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecC-CeEEEEeCCCCEEEEecccccCHhhCCCcc
Confidence 3444555667777788888888888888888876531100 00000 0124566667778886544 33
Q ss_pred eEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 201 KFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 280 (665)
Q Consensus 201 ~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~ 280 (665)
...++-.+..=...|.+...-.+. ..++.-. |+++|++||| ++.+++
T Consensus 112 ~v~l~~~~~~~~~~l~~~~~~~~~---~~~~~~~----------------p~v~~~dIgG--------------l~~~k~ 158 (405)
T 4b4t_J 112 RVCLRSDSYMLHKVLENKADPLVS---LMMVEKV----------------PDSTYDMVGG--------------LTKQIK 158 (405)
T ss_dssp EEEEETTTCSCCEECCCCCSCCTT---SCEEECS----------------CSCCGGGSCS--------------CHHHHH
T ss_pred eeeeecccceeeeecCcccCchhh---hccccCC----------------CCCCHHHhCC--------------HHHHHH
Confidence 344444433221222222111111 1111111 4456777777 889999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchhh
Q psy15936 281 ELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYTL 353 (665)
Q Consensus 281 el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l 353 (665)
++++.|.+|+.+|+.|+..|+.+|+|+ |||||||+++++ +.+..|+...++++..+|+|++++.+ +.+
T Consensus 159 ~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~v-----r~l 233 (405)
T 4b4t_J 159 EIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMV-----REL 233 (405)
T ss_dssp HHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHH-----HHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHH-----HHH
Confidence 999999999999999999999999998 999999999998 66789999999999999999999988 999
Q ss_pred hhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHH
Q psy15936 354 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433 (665)
Q Consensus 354 ~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~ai 433 (665)
|..++...||++|+|++|++.+.+.+.-+|.+...+++...+ |...| |+....+|++.| |+|.
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~l---L~~lD-----g~~~~~~V~vIa---------ATNr 296 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLEL---LNQLD-----GFETSKNIKIIM---------ATNR 296 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHH---HHHHH-----TTTCCCCEEEEE---------EESC
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHH---HHhhh-----ccCCCCCeEEEe---------ccCC
Confidence 999999999999999999999888766555555544442222 23333 555677899998 9999
Q ss_pred HHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC
Q psy15936 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 513 (665)
Q Consensus 434 a~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~ 513 (665)
++.+|++++|+++.+....++.++...+..||+......+ +-+++| +..+...++|+
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---l~~dvd--------------------l~~lA~~t~G~ 353 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN---LTRGIN--------------------LRKVAEKMNGC 353 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB---CCSSCC--------------------HHHHHHHCCSC
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC---CCccCC--------------------HHHHHHHCCCC
Confidence 9999999999999999999999999999999988655432 234555 78889999999
Q ss_pred cccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 514 EATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 514 ~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
+|++ +.++|.+|++.|+|+++..|+.+||..|..+|+
T Consensus 354 SGAD-i~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 354 SGAD-VKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp CHHH-HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 9998 999999999999999999999999999987664
No 30
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.88 E-value=1.9e-22 Score=178.53 Aligned_cols=101 Identities=27% Similarity=0.372 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccce
Q psy15936 149 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESY 228 (665)
Q Consensus 149 ~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~ 228 (665)
.+.++++++.++++++.+++|++.|+++|++||+|++++|+++++|++++|++|+|++++.+|+++|+||+|||||++++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~ 88 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTL 88 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcce
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCccchhhhhcccC
Q psy15936 229 TLHKILPNKMDVDEAIKSSEG 249 (665)
Q Consensus 229 ~i~~iLp~~~dp~v~~m~~e~ 249 (665)
+|+++||+++||+|++|.+|+
T Consensus 89 ~Iv~iLp~e~Dp~V~~M~vee 109 (109)
T 2wg5_A 89 AIVNVLPTSKDPMVYGFEVEE 109 (109)
T ss_dssp CEEEEEC--------------
T ss_pred EeEEeCCCCcCccchheEecC
Confidence 999999999999999998763
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=5.9e-22 Score=207.34 Aligned_cols=187 Identities=21% Similarity=0.298 Sum_probs=129.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHH----HhcCCeEEEEcCcccc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA----REHAPSIIFMDEIDSI 484 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a----~~~~p~VlliDEID~l 484 (665)
+..+|.++||+||||||||++|+++|+.++.++++++++++...+.|.....++.+|..+ +...|+|+||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999888 4678999999999998
Q ss_pred ccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccc
Q psy15936 485 GSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPAL 564 (665)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aL 564 (665)
.+.+... .......+.....|+..+++..... + .+... ........||+|||+++.+|+++
T Consensus 112 ~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~-~------~~~~~-----------~~~~~~v~vI~ttN~~~~ld~al 172 (293)
T 3t15_A 112 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQ-L------PGMYN-----------KQENARVPIIVTGNDFSTLYAPL 172 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------------------------CCCCCCEEEECSSCCC--CHH
T ss_pred cCCCCCC-ccccchHHHHHHHHHHHhccccccc-c------ccccc-----------cccCCCcEEEEecCCcccCCHHH
Confidence 8744221 1111112233344444444322100 0 00000 00011126999999999999999
Q ss_pred cCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHH
Q psy15936 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKG 620 (665)
Q Consensus 565 lr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~ 620 (665)
+|+|||+..|. .|+.++|.+|++.++.. .+++...++..+.||++++|..
T Consensus 173 ~R~~R~d~~i~--~P~~~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 173 IRDGRMEKFYW--APTREDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHEEEEEE--CCCHHHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred hCCCCCceeEe--CcCHHHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999998887 46999999999988874 3567999999999999988763
No 32
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.8e-24 Score=233.53 Aligned_cols=340 Identities=16% Similarity=0.199 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCceeEEEEEEeCCCeEEEEEeC---------C
Q psy15936 133 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQL----LQEQGSYVGEVVKPMDKKKVLVKVHP---------E 199 (665)
Q Consensus 133 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~----l~~~pl~vg~v~eil~~~~~iVk~~~---------~ 199 (665)
.++..++.+.+.++.+.+.++.+...++++++.++..=.. +....---+ |+..-.+.+++|+... |
T Consensus 56 ~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~-iv~~~~~~~~~v~~~~~~~~~~~~~~ 134 (428)
T 4b4t_K 56 KEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTG-IVSSTTGMSYVVRILSTLDRELLKPS 134 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEE-EEEETTSCEEEECBCSSSCTTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCee-EEecCCCCEEEEeccccccHhhCCCC
Confidence 3445566777778888888888888888888887652000 000000011 2333444556665332 3
Q ss_pred CeEEEEcCCCcccCCCCCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 200 GKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQR 279 (665)
Q Consensus 200 ~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~ 279 (665)
..+.+...+..-...|.+.. +. ....+.+. .. |+++|++||| ++.++
T Consensus 135 ~~v~~~~~~~~~~~~l~~~~----d~-~v~~~~~~---~~-----------p~v~~~digG--------------l~~~k 181 (428)
T 4b4t_K 135 MSVALHRHSNALVDILPPDS----DS-SISVMGEN---EK-----------PDVTYADVGG--------------LDMQK 181 (428)
T ss_dssp CEEEECSSSCCEEEEECSCC----CC-SSCCCEEE---SS-----------CSCCGGGSCS--------------CHHHH
T ss_pred ceeeeecchhhHHhhcCccc----Cc-chhhccCC---CC-----------CCCCHHHhcc--------------HHHHH
Confidence 33333322211111111110 00 01111111 11 2345666666 88999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchh
Q psy15936 280 NELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 352 (665)
Q Consensus 280 ~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~ 352 (665)
+++++.|.+|..+|+.|+..|+.+|+|+ |||||||+++++ +.+..|+...++++..+|+|++.+.+ +.
T Consensus 182 ~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~i-----r~ 256 (428)
T 4b4t_K 182 QEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMV-----RD 256 (428)
T ss_dssp HHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHH-----HH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHH-----HH
Confidence 9999999999999999999999999998 999999999998 56788999999999999999999888 99
Q ss_pred hhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHH
Q psy15936 353 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432 (665)
Q Consensus 353 l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~a 432 (665)
+|..++...||++|+|++|++...+.+...+.+...+++...+ |...|+ +....++++.| |++
T Consensus 257 lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~l---L~~ldg-----~~~~~~v~vI~---------aTN 319 (428)
T 4b4t_K 257 VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIEL---LTQMDG-----FDQSTNVKVIM---------ATN 319 (428)
T ss_dssp HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHH---HHHHHH-----SCSSCSEEEEE---------EES
T ss_pred HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHH---HHHhhC-----CCCCCCEEEEE---------ecC
Confidence 9999999999999999999998888665555554444442222 333443 44566788888 889
Q ss_pred HHHhhCCceEEEechhhhhhhh-ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 433 VAHHTECTFIRVSGSELVQKFI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 433 ia~~l~~~lirv~~~dl~~~~~-g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
..+.+|++++|+++.+....++ .++...+..||.......+ +.+++| +..++..++
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~---l~~~~d--------------------l~~lA~~t~ 376 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS---LAPEAD--------------------LDSLIIRND 376 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC---BCTTCC--------------------HHHHHHHTT
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC---CCcccC--------------------HHHHHHHCC
Confidence 9999999999999999988886 5788888999988665433 234555 778899999
Q ss_pred CCcccCccccccccchhhhhhhhhcccchhhhhccccEEEE
Q psy15936 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552 (665)
Q Consensus 512 ~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIa 552 (665)
|++|++ +.++|.+|++.|+|+++..++.+||+.|+..++-
T Consensus 377 G~sgad-i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 377 SLSGAV-IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp TCCHHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSC
T ss_pred CCCHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhC
Confidence 999998 9999999999999999999999999998766553
No 33
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.6e-24 Score=230.58 Aligned_cols=234 Identities=20% Similarity=0.308 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
|+|++++++++++.|.+|+.+|+.|+..|+.+|+|+ |||||||+++++ +.+..|+...++++..+|+|++++.
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ 263 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRL 263 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHH
Confidence 344899999999999999999999999999999998 999999999988 6678999999999999999999998
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCCh-HHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD-NQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~-~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppG 423 (665)
+ +.+|..++...||++|+|++|++...+...-.+.+ +....+..++ ...| |+....+|++.|
T Consensus 264 i-----r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL----~~lD-----g~~~~~~ViVIa--- 326 (437)
T 4b4t_I 264 C-----RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL----NQLD-----GFDDRGDVKVIM--- 326 (437)
T ss_dssp H-----HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHH----HHHH-----HCCCSSSEEEEE---
T ss_pred H-----HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHH----HHhh-----CcCCCCCEEEEE---
Confidence 8 99999999999999999999999988865544333 3333333322 2333 445667888888
Q ss_pred ChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 424 tGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
|+|.++.+|++++|+++.|....++.++...+..||+......+ +-+++| +
T Consensus 327 ------ATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~---l~~dvd--------------------l 377 (437)
T 4b4t_I 327 ------ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN---LSEDVN--------------------L 377 (437)
T ss_dssp ------EESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC---BCSCCC--------------------H
T ss_pred ------eCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC---CCCcCC--------------------H
Confidence 89999999999999999999999999999999999988655433 234555 7
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEE
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIa 552 (665)
..++..++||+|++ +.++|.+|++.|+|+++..|+.+||..|..+|+.
T Consensus 378 ~~LA~~T~GfSGAD-I~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 378 ETLVTTKDDLSGAD-IQAMCTEAGLLALRERRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHCCSCCHHH-HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHH-HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhC
Confidence 78899999999998 9999999999999999999999999999876654
No 34
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.1e-23 Score=226.67 Aligned_cols=230 Identities=18% Similarity=0.226 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
++.+++++++.|.+|+.+|+.|+..|+.+|+|+ |||||||+++++ +.+..|+...++++..+|+|++.+.+
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~i-- 263 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII-- 263 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHH--
Confidence 889999999999999999999999999999998 999999999988 66789999999999999999999888
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT 427 (665)
+.+|..++...||++|+|++|++...+.+.-.+.+.....+...+ |...| |+....++++.|
T Consensus 264 ---r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~l---L~~lD-----g~~~~~~vivI~------- 325 (437)
T 4b4t_L 264 ---REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL---LTQMD-----GFDNLGQTKIIM------- 325 (437)
T ss_dssp ---HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHH---HHHHH-----SSSCTTSSEEEE-------
T ss_pred ---HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHH---HHHhh-----cccCCCCeEEEE-------
Confidence 999999999999999999999999888665444444444332222 23333 455666788888
Q ss_pred HHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 428 ~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
|+|.++.+|++++|+++.+....++.++...+..||+......+ +.+++| +..+.
T Consensus 326 --ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---~~~d~d--------------------l~~lA 380 (437)
T 4b4t_L 326 --ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK---KTGEFD--------------------FEAAV 380 (437)
T ss_dssp --EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC---BCSCCC--------------------HHHHH
T ss_pred --ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC---CCcccC--------------------HHHHH
Confidence 89999999999999999999999999999999999988665433 234555 77889
Q ss_pred HhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEE
Q psy15936 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550 (665)
Q Consensus 508 ~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~V 550 (665)
..++||+|++ +.++|.+|++.|+++++..|+.+||..|+.+|
T Consensus 381 ~~t~G~sGAD-i~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 381 KMSDGFNGAD-IRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HTCCSCCHHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HhCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999987654
No 35
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.6e-24 Score=230.93 Aligned_cols=238 Identities=17% Similarity=0.202 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
|+|++.++++|++.|.+|+.+|+.|++.|+.+|+|+ |||||||+++++ +.+..|+...++++..+|+|++++.
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ 290 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARM 290 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHH
Confidence 444889999999999999999999999999999998 999999999988 6678999999999999999999998
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 424 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGt 424 (665)
+ +.+|..++...||++|+|++|++...+.++-.|.+....++...+ |... .|+....+|++.|
T Consensus 291 i-----r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~l---L~~l-----Dg~~~~~~ViVIa---- 353 (467)
T 4b4t_H 291 V-----RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLEL---ITQL-----DGFDPRGNIKVMF---- 353 (467)
T ss_dssp H-----HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHH---HHHH-----HSSCCTTTEEEEE----
T ss_pred H-----HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHH---HHHh-----hccCCCCcEEEEe----
Confidence 8 999999999999999999999999888766555554444332211 2222 2566677888888
Q ss_pred hHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHH
Q psy15936 425 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504 (665)
Q Consensus 425 GKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~ 504 (665)
|++..+.+|++++|+++++....++.++...+..||+......+ +-+++| +.
T Consensus 354 -----ATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~---l~~dvd--------------------l~ 405 (467)
T 4b4t_H 354 -----ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS---VERGIR--------------------WE 405 (467)
T ss_dssp -----ECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC---BCSSCC--------------------HH
T ss_pred -----CCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC---CCCCCC--------------------HH
Confidence 88999999999999999999999999999999999988655433 224444 77
Q ss_pred HHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC
Q psy15936 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555 (665)
Q Consensus 505 ~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn 555 (665)
.+...++||+|++ +.++|.+|++.|+|+++..++.+||..|..+|++...
T Consensus 406 ~LA~~T~GfSGAD-I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 406 LISRLCPNSTGAE-LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp HHHHHCCSCCHHH-HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHH-HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcc
Confidence 8889999999998 9999999999999999999999999999887765443
No 36
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-23 Score=227.80 Aligned_cols=233 Identities=16% Similarity=0.238 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
|+|++.+++++++.|.+|+.+|+.|+..|+.+|+|+ |||||||+++++ +.+..|+...++++..+|+|++.+.
T Consensus 183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ 262 (434)
T 4b4t_M 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKL 262 (434)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHH
Confidence 344889999999999999999999999999999998 999999999988 6678999999999999999999988
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHH-HHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI-KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~-~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppG 423 (665)
+ +.+|..++...||++|+|++|++...+.+.-.+.+... ..+..++ ...| |+....+|++.|
T Consensus 263 i-----r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL----~~ld-----g~~~~~~ViVIa--- 325 (434)
T 4b4t_M 263 V-----RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL----NQLD-----GFSSDDRVKVLA--- 325 (434)
T ss_dssp H-----HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHH----HHHT-----TSCSSCSSEEEE---
T ss_pred H-----HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHH----HHhh-----ccCCCCCEEEEE---
Confidence 8 99999999999999999999999888765544333333 3333322 2222 555667788888
Q ss_pred ChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 424 tGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
|++.++.+|++++|+++.+....++.++...+..||+......+ +-+++| +
T Consensus 326 ------aTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---~~~dvd--------------------l 376 (434)
T 4b4t_M 326 ------ATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT---TDDDIN--------------------W 376 (434)
T ss_dssp ------ECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC---BCSCCC--------------------H
T ss_pred ------eCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC---CCCcCC--------------------H
Confidence 89999999999999999999999999999999999988665433 234555 7
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
..+...++|++|++ +.++|.+|++.|+|+++..++.+||..|...|.
T Consensus 377 ~~lA~~t~G~sGAD-i~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 377 QELARSTDEFNGAQ-LKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHHHHHCSSCCHHH-HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred HHHHHhCCCCCHHH-HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 78899999999998 999999999999999999999999999987654
No 37
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=5e-18 Score=177.76 Aligned_cols=224 Identities=20% Similarity=0.251 Sum_probs=161.9
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCC---ceEEEeCCCCChHHHHHHHHHHhh-------CCceEEEech
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP---KGVLLYGPPGTGKTLLARAVAHHT-------ECTFIRVSGS 447 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~---~~vLL~GppGtGKT~LA~aia~~l-------~~~lirv~~~ 447 (665)
+.+++|++.+++.+.+.+..+. .+..+...|+..+ .++||+||||||||++|+++|+.+ +.+++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3468999999999999888733 4666677776543 469999999999999999999987 3489999999
Q ss_pred hhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccch
Q psy15936 448 ELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAG 527 (665)
Q Consensus 448 dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg 527 (665)
++...+.+........+|..+ .++++||||+|.+...+.+ ...+...+..+..+++. .. .++
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~---~~--~~~-------- 170 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN---NR--DDL-------- 170 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH---CT--TTC--------
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc---CC--CCE--------
Confidence 998888888777778888775 4689999999998755422 22344455555554443 21 111
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCC-
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGI- 601 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~v- 601 (665)
.+|++||.+. .++++|++ ||+..+.|++|+.+++.+|++.++...+..-+.
T Consensus 171 ---------------------~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~ 227 (309)
T 3syl_A 171 ---------------------VVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227 (309)
T ss_dssp ---------------------EEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH
T ss_pred ---------------------EEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 5888887653 25799998 999999999999999999999999876654222
Q ss_pred CHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHh----cCCCCCHHHHH
Q psy15936 602 NLRKIAEL-------MPGASGAEVKGVCTEAGMYALRE----RRVHVTQEDFE 643 (665)
Q Consensus 602 dl~~la~~-------t~g~s~~dl~~l~~~A~~~A~~~----~~~~It~~d~~ 643 (665)
.+..++.. ....+++++.++++.|...+..+ ....++.+|+.
T Consensus 228 ~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 228 AETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 24555554 22346899999999998766544 23455555554
No 38
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=1e-18 Score=147.18 Aligned_cols=76 Identities=29% Similarity=0.511 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecCC
Q psy15936 161 AKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN 236 (665)
Q Consensus 161 ~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp~ 236 (665)
+|++++++|++.|+++|++||+|+|++|+++++|++++|++|+|++++.+|+++|+||+|||||+++++|+++||.
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999984
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=2.1e-17 Score=177.24 Aligned_cols=228 Identities=22% Similarity=0.251 Sum_probs=153.9
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechhhhhhh
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELVQKF 453 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~dl~~~~ 453 (665)
..|+++.|.+..++.+..+... + ..|..++.++||+||||||||++|++++..++. +++.+.+..+...+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~-------~-~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEM-------I-REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHH-------H-HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 3488999999998876554432 1 124455689999999999999999999999874 67777765532211
Q ss_pred h-------------------------------------------------ccchHHHHHHHHHHHh-----c----CCeE
Q psy15936 454 I-------------------------------------------------GEGSRMVRELFVMARE-----H----APSI 475 (665)
Q Consensus 454 ~-------------------------------------------------g~~~~~~~~if~~a~~-----~----~p~V 475 (665)
. +.....++..+..+.. . .|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 1 1112233444433322 1 1679
Q ss_pred EEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe-
Q psy15936 476 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT- 554 (665)
Q Consensus 476 lliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT- 554 (665)
+||||+|.+.. +.+. .|+..++..... +..+++..+. .+|++|
T Consensus 193 l~IDEi~~l~~-----------~~~~---~L~~~le~~~~~--~~ii~t~~~~--------------------~~i~~t~ 236 (368)
T 3uk6_A 193 LFIDEVHMLDI-----------ESFS---FLNRALESDMAP--VLIMATNRGI--------------------TRIRGTS 236 (368)
T ss_dssp EEEESGGGSBH-----------HHHH---HHHHHTTCTTCC--EEEEEESCSE--------------------EECBTSS
T ss_pred EEEhhccccCh-----------HHHH---HHHHHhhCcCCC--eeeeecccce--------------------eeeeccC
Confidence 99999997632 3333 344443332111 1111110000 122222
Q ss_pred -CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Q psy15936 555 -NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 555 -n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
|.+..+++++++ ||.. +.|++|+.+++.+|++.++...+.. .+..+..++..+.+.+++++.++|+.|...|..+
T Consensus 237 ~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 237 YQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 357889999999 9975 8999999999999999988765443 2223777888887458999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHh
Q psy15936 633 RRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 633 ~~~~It~~d~~~Al~~~~ 650 (665)
+...|+.+|+..|+..+.
T Consensus 314 ~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 314 KGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp TCSSBCHHHHHHHHHHSB
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998754
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.74 E-value=8.3e-18 Score=186.51 Aligned_cols=263 Identities=22% Similarity=0.230 Sum_probs=173.7
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC--CceEEEechhhhh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE--CTFIRVSGSELVQ 451 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~--~~lirv~~~dl~~ 451 (665)
|...|++++|+++.++.+..++.. -..|..++.++||+||||||||++|+++|..++ .+|+.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 455678999999999988877754 123666788999999999999999999999999 9999999999999
Q ss_pred hhhccchHHHHHHHHHH---HhcCCeEEEEcCccccccCCcCCCCCCChHH-HHH---------------HHHHHHhhc-
Q psy15936 452 KFIGEGSRMVRELFVMA---REHAPSIIFMDEIDSIGSSRIESGSGGDSEV-QRT---------------MLELLNQLD- 511 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a---~~~~p~VlliDEID~l~~~~~~~~~~~~~~~-~~~---------------l~~Ll~~~d- 511 (665)
.+.+..+. ++.+|..+ +...|+++|+||+|.+++.+.....+..... .+. ..+++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 88999998 7778999999999999987754322111100 000 011222211
Q ss_pred -CCcc-----------------------------------------------------------------cCcccccccc
Q psy15936 512 -GFEA-----------------------------------------------------------------TKNIKGVCTE 525 (665)
Q Consensus 512 -~~~~-----------------------------------------------------------------~~~i~~vc~e 525 (665)
+... ..++.++|..
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~ 262 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQ 262 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC---------------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhh
Confidence 0000 0012233321
Q ss_pred -------chhhhhhhh------------------hc-ccc----------------hhhhhccccEEEEEeCC-------
Q psy15936 526 -------AGMYALRER------------------RV-HVT----------------QEDFEMAVAKVIMATNR------- 556 (665)
Q Consensus 526 -------Ag~~air~~------------------r~-~v~----------------~~df~~a~~~VIatTn~------- 556 (665)
+....+++. .+ .+. .++... . .+|.+||+
T Consensus 263 i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~-~-~~il~tn~~~~~i~~ 340 (456)
T 2c9o_A 263 LMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIA-P-IVIFASNRGNCVIRG 340 (456)
T ss_dssp --------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTC-C-EEEEEECCSEEECBT
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCC-C-EEEEecCCccccccc
Confidence 000000000 00 000 011111 1 35545533
Q ss_pred ------CCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHC-CCCCHHHHHHHHHHHHHH
Q psy15936 557 ------IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELM-PGASGAEVKGVCTEAGMY 628 (665)
Q Consensus 557 ------~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t-~g~s~~dl~~l~~~A~~~ 628 (665)
+..+++.+++ ||.. +.|++|+.++..++++..+...+.. .+..+..++..+ .| +++....+++.|...
T Consensus 341 ~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 341 TEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLL 416 (456)
T ss_dssp TSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHH
T ss_pred cccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 6788999999 9975 6999999999999999887644432 122256677776 55 899999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 629 ALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 629 A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
|..+++..|+.+|+..|+..+..
T Consensus 417 A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 417 AKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HhhcCCCccCHHHHHHHHHHhcC
Confidence 99999999999999999887654
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=1.3e-16 Score=169.38 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=165.2
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
.+.+.+..|+++.|.+..++.+..++... ..+..++.++||+||||||||++|+++++.++.+++.+++..+
T Consensus 20 ~~~~~p~~~~~iiG~~~~~~~l~~~l~~~--------~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 20 ETSLRPSNFDGYIGQESIKKNLNVFIAAA--------KKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp ---CCCCSGGGCCSCHHHHHHHHHHHHHH--------HHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhccCCCCHHHhCChHHHHHHHHHHHHHH--------HhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 45567778999999999999998887641 1122456789999999999999999999999999999998764
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
. ........+.. ...++++|||||+.+. ...+..+..++...... + +... + .
T Consensus 92 ~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~-----~--~~~~-~-~ 143 (338)
T 3pfi_A 92 E------KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLD-----I--IIGS-G-P 143 (338)
T ss_dssp C------SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC-----------------
T ss_pred c------chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccch-----h--hccc-C-c
Confidence 2 12222333322 2457899999999763 24455555544432100 0 0000 0 0
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAE 608 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~ 608 (665)
. .. ...+......+|++||....++++|++ ||+..+.|++|+.+++..+++.++...+.. .+..+..++.
T Consensus 144 ~--~~-----~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 144 A--AQ-----TIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK 214 (338)
T ss_dssp ---CC-----CCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred c--cc-----ceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 0 00 000001122699999999999999999 999999999999999999999998876644 2223667777
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
.+.| +++.+.++++.+...|.......|+.+++..++....
T Consensus 215 ~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 215 RSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp TTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred HHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhC
Confidence 6665 7899999999998888877778899999998887643
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=2.1e-16 Score=166.38 Aligned_cols=230 Identities=19% Similarity=0.218 Sum_probs=162.1
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 451 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~ 451 (665)
.+.+..|+++.|.+..++.+...+... ... ...+.+++|+||||||||++|+++++.++.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAA-------KAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHH-------HHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHH-------Hcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 456678899999999999998877541 111 134578999999999999999999999999999988876421
Q ss_pred hhhccchHHHHHHHHHHHh--cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccCccccccccch
Q psy15936 452 KFIGEGSRMVRELFVMARE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATKNIKGVCTEAG 527 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~--~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~~i~~vc~eAg 527 (665)
. ..++..... ..++++|+||++.+. ...+..+..++....- ..+.......+
T Consensus 77 ------~---~~l~~~l~~~~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~---- 132 (324)
T 1hqc_A 77 ------P---GDLAAILANSLEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTI---- 132 (324)
T ss_dssp ------H---HHHHHHHTTTCCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCE----
T ss_pred ------h---HHHHHHHHHhccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhcccccccccc----
Confidence 1 122222222 457899999999753 2345555555543210 00000000000
Q ss_pred hhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHH
Q psy15936 528 MYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKI 606 (665)
Q Consensus 528 ~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~-~vdl~~l 606 (665)
........+|++||.+..+++++++ ||+..+.|++|+.+++.++++.++...+..- +..+..+
T Consensus 133 --------------~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l 196 (324)
T 1hqc_A 133 --------------RLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI 196 (324)
T ss_dssp --------------EEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred --------------ccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 0000112699999999999999998 9988999999999999999999987655432 2236778
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 607 AELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 607 a~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
+..+.| +++.+.++++.+...|.......|+.+++..++....
T Consensus 197 ~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 197 GRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 888866 6899999999988777666667899999988877653
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.67 E-value=3.3e-16 Score=163.38 Aligned_cols=247 Identities=21% Similarity=0.289 Sum_probs=155.8
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhh-CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhcc
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGE 456 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~-g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g~ 456 (665)
+.+.|.+++++.+...+..+..+....... +...+.++||+||||||||++|+++++.++.+++.+++.++.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358899999999988775422111111110 1135678999999999999999999999999999999988754 34433
Q ss_pred c-hHHHHHHHHHH-----HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhh
Q psy15936 457 G-SRMVRELFVMA-----REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYA 530 (665)
Q Consensus 457 ~-~~~~~~if~~a-----~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~a 530 (665)
. ...+..++..+ ....+++++|||+|.+...... .+.+.........|+..+++....... +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~-------~--- 162 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKH-------G--- 162 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETT-------E---
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEeccc-------c---
Confidence 2 23455555421 1123679999999998765421 112222222234445544442110000 0
Q ss_pred hhhhhcccchhhhhccccEEEEE----eCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh-----------ccC
Q psy15936 531 LRERRVHVTQEDFEMAVAKVIMA----TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS-----------RKM 595 (665)
Q Consensus 531 ir~~r~~v~~~df~~a~~~VIat----Tn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l-----------~~~ 595 (665)
........+|++ ++.+..+++++++ ||+..+.|++|+.+++.+|++..+ ...
T Consensus 163 -----------~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 229 (310)
T 1ofh_A 163 -----------MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 229 (310)
T ss_dssp -----------EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHT
T ss_pred -----------cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 000111257777 4567889999998 999899999999999999998421 112
Q ss_pred CCC---CCCCHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHh
Q psy15936 596 NLT---RGINLRKIAELM-------PGASGAEVKGVCTEAGMYALRERR------VHVTQEDFEMAVAKVM 650 (665)
Q Consensus 596 ~~~---~~vdl~~la~~t-------~g~s~~dl~~l~~~A~~~A~~~~~------~~It~~d~~~Al~~~~ 650 (665)
+.. ++..++.++..+ .+.+.+.+..+|+.+...+..+.. ..|+.+|+.+++....
T Consensus 230 ~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 230 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp TCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred CCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 211 122256666665 245789999999998765443321 1499999999987654
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=1.7e-15 Score=148.86 Aligned_cols=206 Identities=23% Similarity=0.262 Sum_probs=146.6
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-----CCceEE
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIR 443 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-----~~~lir 443 (665)
+.+..++..|+++.|.++.++.+.+.+.. ....+++|+||||||||++|+++++.+ ...++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 45567788889999999999999887753 133459999999999999999999876 355777
Q ss_pred EechhhhhhhhccchHHHHHHHHHHH------hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccC
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMAR------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 517 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a~------~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~ 517 (665)
+++.+... .......+.... ...+.++++||+|.+.. ..+..+..+++... ..
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~~---~~- 132 (226)
T 2chg_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYS---KS- 132 (226)
T ss_dssp EETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTT---TT-
T ss_pred eccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhcC---CC-
Confidence 77654321 111222222221 24578999999997632 33444555544321 10
Q ss_pred ccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCC
Q psy15936 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNL 597 (665)
Q Consensus 518 ~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~ 597 (665)
. .+|++||.+..+++++.+ ||. .+.|++|+.++..+++..++...+.
T Consensus 133 -~-----------------------------~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (226)
T 2chg_A 133 -C-----------------------------RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV 179 (226)
T ss_dssp -E-----------------------------EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred -C-----------------------------eEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 588899999999999998 887 8999999999999999988875444
Q ss_pred C-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 598 T-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 598 ~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
. .+..+..++..+.| +++.+.++++.++..+ ..|+.+|+..++.
T Consensus 180 ~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 180 KITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp CBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 3 12236677777766 6788888877776543 5899999999875
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.66 E-value=2.7e-15 Score=160.92 Aligned_cols=223 Identities=22% Similarity=0.273 Sum_probs=159.1
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---------CCceEEEechh
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------ECTFIRVSGSE 448 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---------~~~lirv~~~d 448 (665)
.+++.|.+.+++.+...+... +....+.+++|+||||||||++|+++++.+ +..++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~---------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPA---------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGG---------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHH---------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 357889999999998877431 112456789999999999999999999988 78888998765
Q ss_pred hhhhh----------------hcc-chHHHHHHHHHHHhc-CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 449 LVQKF----------------IGE-GSRMVRELFVMAREH-APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 449 l~~~~----------------~g~-~~~~~~~if~~a~~~-~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
..... .+. .......++...... .+.++++||+|.+.... ..+..+..+++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRIN 159 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhch
Confidence 32110 111 122234444443333 37799999999875421 1345666777665
Q ss_pred cCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---CCCCccccCCCCeeE-EEEeCCCCHHHHHH
Q psy15936 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---DILDPALLRPGRIDR-KIEFPPPNEEARLD 586 (665)
Q Consensus 511 d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---~~Ld~aLlr~gRfd~-~I~~~~P~~eer~~ 586 (665)
........+ .+|++||.+ +.+++.+++ ||.. .+.|++|+.++..+
T Consensus 160 ~~~~~~~~~-----------------------------~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 160 QELGDRVWV-----------------------------SLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRD 208 (387)
T ss_dssp GCC-----C-----------------------------EEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHH
T ss_pred hhcCCCceE-----------------------------EEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHH
Confidence 543201111 588999887 678889988 8875 89999999999999
Q ss_pred HHHHhhcc----CCCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 587 ILRIHSRK----MNLTRGINLRKIAELMP---GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 587 Il~~~l~~----~~~~~~vdl~~la~~t~---g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
|++.++.. ..++++ .++.++..+. | +++.+.++|+.|...|..++...|+.+|+..|+..+..
T Consensus 209 il~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDPD-VVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHBCTTTBCSS-HHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCHH-HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 99988764 223322 3677777766 6 68899999999998888878889999999999988754
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=7.5e-17 Score=182.47 Aligned_cols=237 Identities=22% Similarity=0.336 Sum_probs=145.3
Q ss_pred CCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCC-CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh--
Q psy15936 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-- 451 (665)
Q Consensus 375 ~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~-~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-- 451 (665)
...++++.|+++.++.+.+.+.+. .+.. .++..++|+||||||||++|++++..++.++.++++.....
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 344567899999999987766541 1111 15678999999999999999999999999999998876432
Q ss_pred -------hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccc
Q psy15936 452 -------KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCT 524 (665)
Q Consensus 452 -------~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~ 524 (665)
.+.|.....+...|..+....| ++|+||||++...... .....|++.++...... +
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~----------~~~~~LL~~ld~~~~~~-~----- 211 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG----------DPSSAMLEVLDPEQNSS-F----- 211 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTB-C-----
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc----------CHHHHHHHHHhhhhcce-e-----
Confidence 3445445555566666554555 9999999988654311 11233444444321100 0
Q ss_pred cchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc-----cCCCCC
Q psy15936 525 EAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR-----KMNLTR 599 (665)
Q Consensus 525 eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~-----~~~~~~ 599 (665)
..+.....++.....||+|||+++.++++|++ ||+ .|.|+.|+.+++.+|++.++. ..++..
T Consensus 212 ----------~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~ 278 (543)
T 3m6a_A 212 ----------SDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKK 278 (543)
T ss_dssp ----------CCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCG
T ss_pred ----------ecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 00001111222334799999999999999999 995 799999999999999998862 223211
Q ss_pred ---CC---CHHHHHHHCCC-CCHHHHH----HHHHHHHHHHHHh--cCCCCCHHHHHHHHHHH
Q psy15936 600 ---GI---NLRKIAELMPG-ASGAEVK----GVCTEAGMYALRE--RRVHVTQEDFEMAVAKV 649 (665)
Q Consensus 600 ---~v---dl~~la~~t~g-~s~~dl~----~l~~~A~~~A~~~--~~~~It~~d~~~Al~~~ 649 (665)
.+ .+..++....+ .+.++++ .+|+.|+..+... ....|+.+|+.+++..-
T Consensus 279 ~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 279 SNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp GGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred ccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 11 24454543332 3445555 4555554444443 34579999999988544
No 47
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=99.64 E-value=2.6e-15 Score=148.39 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCccc
Q psy15936 133 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDI 212 (665)
Q Consensus 133 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~ 212 (665)
.++.+++.++..+.++.+++..+++.+++|+.++++|+++|+++|+++|+|++++++++++|+ ++|++|+|++++.++.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~ 132 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDA 132 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCH
Confidence 456788899999999999999999999999999999999999999999999999999999999 5889999999999999
Q ss_pred CCCCCCceeeccccceEEEeecCCCcc
Q psy15936 213 NDVTPNCRVALRNESYTLHKILPNKMD 239 (665)
Q Consensus 213 ~~l~pG~~Val~~~~~~i~~iLp~~~d 239 (665)
++|+||++|+|| ++++|+++||.+.-
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~~ 158 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEAV 158 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCCC
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCCc
Confidence 999999999997 69999999986543
No 48
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.64 E-value=7.9e-17 Score=176.29 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=81.4
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCC-CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhh-hhhcc
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGE 456 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~-~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~-~~~g~ 456 (665)
++++|+++.++.+..++..+..++..+..++.. ++.++||+||||||||++|+++|..++.+|+.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999988887765555555544432 5688999999999999999999999999999999998877 47774
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 457 -GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 457 -~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
.+..++.+|..+... +++||++.+.... .+....+.+.+|+..++++.+..
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~------------------ 146 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEV------------------ 146 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccc------------------
Confidence 678889999887664 3478887654321 12233567888999999875543
Q ss_pred cccchhhhhccccEEEEE-eCCCCCCCccccCCCCeeEEEEeCCCCHH-HHHHHHH
Q psy15936 536 VHVTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEE-ARLDILR 589 (665)
Q Consensus 536 ~~v~~~df~~a~~~VIat-Tn~~~~Ld~aLlr~gRfd~~I~~~~P~~e-er~~Il~ 589 (665)
.++++ ||+++.+|++|+|+||||+.|+++.|+.. .|.+|+.
T Consensus 147 -------------~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 147 -------------ENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp --------------------------------------------------------
T ss_pred -------------ccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 13444 99999999999999999999999999987 7778763
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.63 E-value=2.8e-15 Score=165.35 Aligned_cols=192 Identities=16% Similarity=0.280 Sum_probs=138.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~ 487 (665)
+.+++|+||||||||+||+++++.+ +..++.+++.++...+...........|.......+++++|||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 78899999888755443322211122333333336889999999987542
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC-CCCC---CCcc
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN-RIDI---LDPA 563 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn-~~~~---Ld~a 563 (665)
. ..+..+..+++.+... . . .+|.+|+ .+.. ++++
T Consensus 210 ~---------~~q~~l~~~l~~l~~~---~-~-----------------------------~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELHDS---G-K-----------------------------QIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp H---------HHHHHHHHHHHHHHTT---T-C-----------------------------EEEEEESSCGGGCSSCCHH
T ss_pred h---------HHHHHHHHHHHHHHHC---C-C-----------------------------eEEEEECCCHHHHHHHHHH
Confidence 1 3344455555443211 0 0 2455554 4443 7899
Q ss_pred ccCCCCee--EEEEeCCCCHHHHHHHHHHhhccCC--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy15936 564 LLRPGRID--RKIEFPPPNEEARLDILRIHSRKMN--LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQ 639 (665)
Q Consensus 564 Llr~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~--~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~ 639 (665)
+++ ||. ..+.+++|+.++|.+|++..+...+ +++++ +..|+..+.| +.+++..+++.+...|...+. .|+.
T Consensus 248 L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~ 322 (440)
T 2z4s_A 248 LVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDL 322 (440)
T ss_dssp HHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCH
T ss_pred HHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCH
Confidence 998 886 6899999999999999999887544 44443 7889999876 899999999999988876554 7999
Q ss_pred HHHHHHHHHHhh
Q psy15936 640 EDFEMAVAKVMQ 651 (665)
Q Consensus 640 ~d~~~Al~~~~~ 651 (665)
+++.++++...+
T Consensus 323 ~~~~~~l~~~~~ 334 (440)
T 2z4s_A 323 KEAILLLKDFIK 334 (440)
T ss_dssp HHHHHHTSTTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.63 E-value=1.8e-15 Score=155.82 Aligned_cols=226 Identities=19% Similarity=0.190 Sum_probs=142.0
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhh-hccc
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF-IGEG 457 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~-~g~~ 457 (665)
..+.|.+...+.+...... ....+...+..++.++||+||||||||++|+++|..++.+++.+++++..... .+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3456776666665543211 01223333456778999999999999999999999999999999887632211 1122
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcc
Q psy15936 458 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVH 537 (665)
Q Consensus 458 ~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~ 537 (665)
...++.+|..+....+++++|||+|.+.+.+..+ ........+. |...+++.....
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~---L~~~~~~~~~~~-------------------- 165 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQA---LLVLLKKAPPQG-------------------- 165 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHH---HHHHTTCCCSTT--------------------
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHH---HHHHhcCccCCC--------------------
Confidence 2456778888777778999999999986654211 1122233333 333333321111
Q ss_pred cchhhhhccccEEEEEeCCCCCCCc-cccCCCCeeEEEEeCCCCH-HHHHHHHHHhhccCCCCCCCCHHHHHHHCCCC--
Q psy15936 538 VTQEDFEMAVAKVIMATNRIDILDP-ALLRPGRIDRKIEFPPPNE-EARLDILRIHSRKMNLTRGINLRKIAELMPGA-- 613 (665)
Q Consensus 538 v~~~df~~a~~~VIatTn~~~~Ld~-aLlr~gRfd~~I~~~~P~~-eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~-- 613 (665)
....||+|||.++.+++ .+++ ||+..+.+|+++. ++...++.. ...+ .+.++..++..+.|+
T Consensus 166 --------~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~ 231 (272)
T 1d2n_A 166 --------RKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKV 231 (272)
T ss_dssp --------CEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEE
T ss_pred --------CCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCc
Confidence 01158999999988887 5655 9999999887765 444444433 3333 344588899999887
Q ss_pred --CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 614 --SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 614 --s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
+.+++.++++.|...+ .....++|..++....
T Consensus 232 ~g~ir~l~~~l~~a~~~~-----~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 232 WIGIKKLLMLIEMSLQMD-----PEYRVRKFLALLREEG 265 (272)
T ss_dssp EECHHHHHHHHHHHTTSC-----GGGHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHcC
Confidence 5677777777664322 2345566666665543
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.62 E-value=2.9e-15 Score=160.93 Aligned_cols=255 Identities=19% Similarity=0.270 Sum_probs=152.7
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHh-hC-CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh-hhcc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDA-LG-IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 456 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~-~g-~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~-~~g~ 456 (665)
.+.|++.+++.+..++............ .+ ..++.++||+||||||||++|+++|..++.+|+.+++.++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999998888532111100000 01 1256789999999999999999999999999999999987643 5555
Q ss_pred c-hHHHHHHHHHH----HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 457 G-SRMVRELFVMA----REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 457 ~-~~~~~~if~~a----~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
. ...+..+|..+ ....++++||||+|++...+.....+.+.........|+..+++.... + ....+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~--~---~~~~~~~~~ 170 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAA--V---PPQGGRKHP 170 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------------------
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceee--c---cCccccccC
Confidence 4 45556666654 334568999999999987764444333333333455555555532100 0 000000000
Q ss_pred hhhhcccchhhhhccccEEEEEeCCC----------CC-----------------------------------CCccccC
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRI----------DI-----------------------------------LDPALLR 566 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~----------~~-----------------------------------Ld~aLlr 566 (665)
...... +......+|+++|.. .. +.++|++
T Consensus 171 ~~~~~~-----i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 171 QQEFLQ-----VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp ---CCC-----CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred CCceEE-----EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 000000 001112455555532 11 6788887
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHHH----hhc-------cCCCCCCC---CHHHHHH--HCCCCCHHHHHHHHHHHHHHHH
Q psy15936 567 PGRIDRKIEFPPPNEEARLDILRI----HSR-------KMNLTRGI---NLRKIAE--LMPGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 567 ~gRfd~~I~~~~P~~eer~~Il~~----~l~-------~~~~~~~v---dl~~la~--~t~g~s~~dl~~l~~~A~~~A~ 630 (665)
||+..+.|++|+.+++.+|+.. ++. ..+....+ -++.|+. ....+..|+|+++++++...++
T Consensus 246 --R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l 323 (363)
T 3hws_A 246 --RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTM 323 (363)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred --ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHH
Confidence 9999999999999999999986 221 11221112 2555664 3344567999999999998887
Q ss_pred HhcC-------CCCCHHHHHHHH
Q psy15936 631 RERR-------VHVTQEDFEMAV 646 (665)
Q Consensus 631 ~~~~-------~~It~~d~~~Al 646 (665)
.+.. ..|+.+++.+.+
T Consensus 324 ~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 324 YDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp HSTTTCCCSEEEECHHHHTTCCS
T ss_pred HhcccccCCceeEEcHHHHhCcC
Confidence 7632 146666665543
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.61 E-value=3.6e-15 Score=164.65 Aligned_cols=210 Identities=24% Similarity=0.274 Sum_probs=147.9
Q ss_pred hccCCCCCccccCCChHHH---HHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 370 VEKVPDSTYEMVGGLDNQI---KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~---~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.+.+.+..++++.|++..+ ..++..+.. ....++||+||||||||++|+++++.++.+++.+++
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 3456678899999999888 667666643 133689999999999999999999999999999887
Q ss_pred hhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccc
Q psy15936 447 SELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGV 522 (665)
Q Consensus 447 ~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~v 522 (665)
.... ...++.++..+. ...+.++|||||+.+.... +..+...++ .. . +
T Consensus 84 ~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le---~~--~--v--- 135 (447)
T 3pvs_A 84 VTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIE---DG--T--I--- 135 (447)
T ss_dssp TTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHH---TT--S--C---
T ss_pred ccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHh---cC--c--e---
Confidence 5432 223444444433 2457899999999874321 222333333 21 1 1
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEe--CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC----
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMAT--NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN---- 596 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatT--n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~---- 596 (665)
.+|++| |....+++++++ |+. ++.|++|+.+++..+++.++....
T Consensus 136 --------------------------~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 136 --------------------------TFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp --------------------------EEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred --------------------------EEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 466666 555679999999 885 788999999999999999887621
Q ss_pred ---CC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHh
Q psy15936 597 ---LT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 597 ---~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~--~~~~It~~d~~~Al~~~~ 650 (665)
+. .+..++.++..+.| +.+.+.++++.|...+... +...||.+++.+++....
T Consensus 187 ~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp TSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred cccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 11 12236778888766 7899999999988776422 345799999998886543
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=9.5e-15 Score=154.68 Aligned_cols=229 Identities=22% Similarity=0.243 Sum_probs=149.2
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
++.+.+..++++.|.++.++.+...+.. +.++||+||||||||++|+++++.++.++.++.+...
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~ 82 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCC
Confidence 3344445566788999988887665532 3589999999999999999999999999998887311
Q ss_pred h--hhhhccch-HHHHHHHHHHHhcC---CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccc
Q psy15936 450 V--QKFIGEGS-RMVRELFVMAREHA---PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVC 523 (665)
Q Consensus 450 ~--~~~~g~~~-~~~~~if~~a~~~~---p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc 523 (665)
. ..+.+... ......+. .... .+++|+||++.+. ...+..+.+.++..... +
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~-----~---- 140 (331)
T 2r44_A 83 LLPSDLIGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVT-----I---- 140 (331)
T ss_dssp CCHHHHHEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEE-----E----
T ss_pred CChhhcCCceeecCCCCceE--eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCcee-----e----
Confidence 0 11111100 00000000 0011 3699999999753 34555566655542100 0
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC--
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN-- 596 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~-- 596 (665)
.|. .. .. .....+|+|+|+.+ .+++++++ ||+..+.+++|+.+++.+|++.++....
T Consensus 141 --~g~-------~~----~~-~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~ 204 (331)
T 2r44_A 141 --GDT-------TY----PL-DNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNY 204 (331)
T ss_dssp --TTE-------EE----EC-CSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCC
T ss_pred --CCE-------EE----EC-CCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcch
Confidence 000 00 00 01115777778554 38999999 9998999999999999999998876432
Q ss_pred ----------------------CCCCCCHHHHHHHC-------------------CCCCHHHHHHHHHHHHHHHHHhcCC
Q psy15936 597 ----------------------LTRGINLRKIAELM-------------------PGASGAEVKGVCTEAGMYALRERRV 635 (665)
Q Consensus 597 ----------------------~~~~vdl~~la~~t-------------------~g~s~~dl~~l~~~A~~~A~~~~~~ 635 (665)
++++ -++.++... .|.|++.+..+++.|...|..+++.
T Consensus 205 ~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~ 283 (331)
T 2r44_A 205 QVQKIVSKNDVLEIRNEINKVTISES-LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRD 283 (331)
T ss_dssp CCCCCSCHHHHHHHHHHHHTCBCCHH-HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hccccCCHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCC
Confidence 1111 133333321 2568999999999999999998998
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy15936 636 HVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 636 ~It~~d~~~Al~~~~~~ 652 (665)
.|+.+|+..++..++..
T Consensus 284 ~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 284 YVLPEDIKEVAYDILNH 300 (331)
T ss_dssp BCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhHh
Confidence 99999999999988753
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.59 E-value=2.7e-14 Score=151.74 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=140.6
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc------------
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT------------ 440 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~------------ 440 (665)
.++..|+++.|.+..++.+...... ....++||+||||||||++|++++..++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567788999998876654332211 123469999999999999999999988631
Q ss_pred ---------------------eEEEechhhhhhhhccchHHHHHHHHHH---------HhcCCeEEEEcCccccccCCcC
Q psy15936 441 ---------------------FIRVSGSELVQKFIGEGSRMVRELFVMA---------REHAPSIIFMDEIDSIGSSRIE 490 (665)
Q Consensus 441 ---------------------lirv~~~dl~~~~~g~~~~~~~~if~~a---------~~~~p~VlliDEID~l~~~~~~ 490 (665)
++.+........+.|... ....+... ....++++||||++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~----- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE----- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----
Confidence 111111000011111100 01111111 01236799999999763
Q ss_pred CCCCCChHHHHHHHHHHHhhcC-CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-CCCccccCCC
Q psy15936 491 SGSGGDSEVQRTMLELLNQLDG-FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-ILDPALLRPG 568 (665)
Q Consensus 491 ~~~~~~~~~~~~l~~Ll~~~d~-~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-~Ld~aLlr~g 568 (665)
...+..+..+++.-.. +... |.. .. ......+|+|||..+ .++++|++
T Consensus 158 ------~~~~~~Ll~~le~~~~~~~~~----------g~~-----------~~-~~~~~~li~~~n~~~~~l~~~L~~-- 207 (350)
T 1g8p_A 158 ------DHIVDLLLDVAQSGENVVERD----------GLS-----------IR-HPARFVLVGSGNPEEGDLRPQLLD-- 207 (350)
T ss_dssp ------HHHHHHHHHHHHHSEEEECCT----------TCC-----------EE-EECCEEEEEEECSCSCCCCHHHHT--
T ss_pred ------HHHHHHHHHHHhcCceEEEec----------ceE-----------Ee-eCCceEEEEEeCCCCCCCCHHHHh--
Confidence 3445556665554210 0000 000 00 001125888899744 89999999
Q ss_pred CeeEEEEeCCC-CHHHHHHHHHHhhc-------------------------------cCCCCCCCCHHHHHHHCCC---C
Q psy15936 569 RIDRKIEFPPP-NEEARLDILRIHSR-------------------------------KMNLTRGINLRKIAELMPG---A 613 (665)
Q Consensus 569 Rfd~~I~~~~P-~~eer~~Il~~~l~-------------------------------~~~~~~~vdl~~la~~t~g---~ 613 (665)
||+..+.+++| +.+++.+|++.++. ...++++ .+..++....+ -
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~ 286 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSD 286 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSC
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCC
Confidence 99989999999 67777788866311 1222222 24445544332 2
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc
Q psy15936 614 SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653 (665)
Q Consensus 614 s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~ 653 (665)
+.+.+.++++.|...|..+++..|+.+|+..|+..++...
T Consensus 287 ~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 287 GLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhc
Confidence 6799999999999999888888999999999999887643
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.59 E-value=7.7e-15 Score=154.80 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=138.6
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
+.+...+.+|+++.|.++.++.++.++.. ...+..+|++||||||||++|+++++.++..++.+++++
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 56677888999999999999999888763 234567888999999999999999999999999999876
Q ss_pred hhhhhhccchHHHHHHHHHHHhc-----CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccccc
Q psy15936 449 LVQKFIGEGSRMVRELFVMAREH-----APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVC 523 (665)
Q Consensus 449 l~~~~~g~~~~~~~~if~~a~~~-----~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc 523 (665)
.. ...++..+...... .++++++||+|.+.+ .+.+..+..+++.... . +
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~~---~--~---- 137 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYSS---N--C---- 137 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHGG---G--C----
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCCC---C--c----
Confidence 32 22233333332222 568999999998641 2345555555554311 0 1
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh-------ccCC
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS-------RKMN 596 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l-------~~~~ 596 (665)
.+|++||.+..+++++++ ||. .+.|++|+.+++.+|++.++ ...+
T Consensus 138 -------------------------~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~ 189 (324)
T 3u61_B 138 -------------------------SIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEG 189 (324)
T ss_dssp -------------------------EEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------EEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999 884 79999999999877765443 2223
Q ss_pred CC-CC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 597 LT-RG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 597 ~~-~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+. .+ ..++.++..+.| +.+++.+.++.++ ....|+.+++..++
T Consensus 190 ~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~ 234 (324)
T 3u61_B 190 IAIADMKVVAALVKKNFP-DFRKTIGELDSYS------SKGVLDAGILSLVT 234 (324)
T ss_dssp CCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG------GGTCBCC-------
T ss_pred CCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh------ccCCCCHHHHHHHh
Confidence 22 12 347778888776 4455556665554 22346766666544
No 56
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=2e-14 Score=151.79 Aligned_cols=193 Identities=16% Similarity=0.230 Sum_probs=131.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSR 488 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~ 488 (665)
.+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|.... ..++++++||++.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~- 113 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK- 113 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC-
Confidence 46789999999999999999999988 88999999988765544332221122232222 34789999999987532
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---CCCcccc
Q psy15936 489 IESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---ILDPALL 565 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---~Ld~aLl 565 (665)
...+..+..+++..... . ...|+++++.+. .++++++
T Consensus 114 --------~~~~~~l~~~l~~~~~~---~-----------------------------~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 114 --------ERTQIEFFHIFNTLYLL---E-----------------------------KQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp --------HHHHHHHHHHHHHHHHT---T-----------------------------CEEEEEESSCGGGCTTSCHHHH
T ss_pred --------hHHHHHHHHHHHHHHHC---C-----------------------------CeEEEEecCChHHHHHhhhHhh
Confidence 13344444444432110 0 013555556655 6889999
Q ss_pred CCCCee--EEEEeCCCCHHHHHHHHHHhhccCCCCC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHH---HHH-hcCCCC-
Q psy15936 566 RPGRID--RKIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMY---ALR-ERRVHV- 637 (665)
Q Consensus 566 r~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~~~~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~---A~~-~~~~~I- 637 (665)
+ ||. ..+.|++ +.+++.+|++.++...++.- +..++.++..+ | +.+++..++..+... ++. .....|
T Consensus 154 s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~~l~~~~~~~i~ 228 (324)
T 1l8q_A 154 S--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFEGLERKERKERD 228 (324)
T ss_dssp H--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred h--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHHHhccccccCCC
Confidence 8 886 6899999 99999999999987655431 22377888888 5 789999998887765 111 223357
Q ss_pred CHHHHHHHHHHHhh
Q psy15936 638 TQEDFEMAVAKVMQ 651 (665)
Q Consensus 638 t~~d~~~Al~~~~~ 651 (665)
+.+++.+++.....
T Consensus 229 t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 229 KLMQIVEFVANYYA 242 (324)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC
Confidence 88888888876543
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.58 E-value=3.5e-14 Score=141.01 Aligned_cols=206 Identities=18% Similarity=0.242 Sum_probs=142.1
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+..++++.|.+..++.+...+.. + ..+..++|+||+|+|||++|+.+++.+...
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~ 81 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 81 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 4556677888999999999999887753 1 234579999999999999999999877532
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++..+... .........++..+. ...+.++++||+|.+. .....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~ 144 (250)
T 1njg_A 82 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFN 144 (250)
T ss_dssp CSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHH
T ss_pred ccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHH
Confidence 12222111 011222334444322 2346899999999752 23333
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
.+ +..++..... + .+|++|+.+..+++++++ |+ ..+.+++|+.
T Consensus 145 ~l---~~~l~~~~~~--~-----------------------------~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~ 187 (250)
T 1njg_A 145 AL---LKTLEEPPEH--V-----------------------------KFLLATTDPQKLPVTILS--RC-LQFHLKALDV 187 (250)
T ss_dssp HH---HHHHHSCCTT--E-----------------------------EEEEEESCGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred HH---HHHHhcCCCc--e-----------------------------EEEEEeCChHhCCHHHHH--Hh-hhccCCCCCH
Confidence 34 3333322111 1 588899988889999988 75 6899999999
Q ss_pred HHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
++..+++..++...+.. .+..+..++..+.| +++.+..+++.|...+ ...|+.+|+.+++
T Consensus 188 ~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 188 EQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 99999999988765433 22236778888877 8999999999885432 3479999998875
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.58 E-value=3.9e-14 Score=141.55 Aligned_cols=204 Identities=14% Similarity=0.145 Sum_probs=138.2
Q ss_pred CCccccCC---ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhh
Q psy15936 376 STYEMVGG---LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSEL 449 (665)
Q Consensus 376 ~~~~~i~G---~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl 449 (665)
..|+++.| ....++.+...+.. ..+.+++|+||||||||++|++++..+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45666654 24555555554432 2567899999999999999999998774 67888888776
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
...+... +.. ...+.++++||++.+... ...+..+..+++..... .
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~---~------------ 137 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQ---K------------ 137 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHH---C------------
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHc---C------------
Confidence 5433111 111 134689999999976432 12244444544432110 0
Q ss_pred hhhhhhcccchhhhhccccEEEEEeC-CCC---CCCccccCCCCee--EEEEeCCCCHHHHHHHHHHhhccCCCCC-CCC
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATN-RID---ILDPALLRPGRID--RKIEFPPPNEEARLDILRIHSRKMNLTR-GIN 602 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn-~~~---~Ld~aLlr~gRfd--~~I~~~~P~~eer~~Il~~~l~~~~~~~-~vd 602 (665)
...+|++|+ .+. .+++++.+ ||. ..+.|++|+.+++.+++..++...+..- +..
T Consensus 138 -----------------~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 198 (242)
T 3bos_A 138 -----------------RGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDV 198 (242)
T ss_dssp -----------------SCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHH
T ss_pred -----------------CCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 012555554 333 35578887 775 7999999999999999999987655432 223
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 603 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 603 l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
++.++..+.| +.+++.++++.+...|..++ ..||.+++..+++
T Consensus 199 ~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 199 GRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 6778888876 88999999999998886555 4699999998874
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=2.2e-14 Score=152.46 Aligned_cols=212 Identities=22% Similarity=0.259 Sum_probs=147.7
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC------Cce
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE------CTF 441 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~------~~l 441 (665)
.+.+...+..|+++.|.++.++.+...+.. ....+++|+||||||||++|++++..++ ..+
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 355667788899999999999998887753 1224599999999999999999999864 357
Q ss_pred EEEechhhhhhhhccchHHHHHHHHHHH----------------hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHH
Q psy15936 442 IRVSGSELVQKFIGEGSRMVRELFVMAR----------------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 505 (665)
Q Consensus 442 irv~~~dl~~~~~g~~~~~~~~if~~a~----------------~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~ 505 (665)
+.+++.+... ...++..+.... ...+.++++||+|.+.. ..+..+..
T Consensus 93 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~ 155 (353)
T 1sxj_D 93 LELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRR 155 (353)
T ss_dssp EEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHH
T ss_pred EEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHH
Confidence 7777665311 111111111111 12356999999997632 34455555
Q ss_pred HHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHH
Q psy15936 506 LLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 585 (665)
Q Consensus 506 Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~ 585 (665)
+++.... . . .+|++||.+..+++++++ |+. .+.|++|+.++..
T Consensus 156 ~le~~~~---~--~-----------------------------~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~ 198 (353)
T 1sxj_D 156 TMETYSG---V--T-----------------------------RFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAI 198 (353)
T ss_dssp HHHHTTT---T--E-----------------------------EEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHH
T ss_pred HHHhcCC---C--c-----------------------------eEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHH
Confidence 5544211 1 1 477888999999999998 885 8999999999999
Q ss_pred HHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Q psy15936 586 DILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV-HVTQEDFEMAVA 647 (665)
Q Consensus 586 ~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~-~It~~d~~~Al~ 647 (665)
.++...+...++. ++..+..++..+.| +.+.+.++++.+...+.+.+.. .|+.+|+..++.
T Consensus 199 ~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 199 DRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 9999888655432 22237788888887 5777778888777666544332 799999887654
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=5.2e-14 Score=151.34 Aligned_cols=212 Identities=21% Similarity=0.259 Sum_probs=148.6
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-----------CCceEEEech
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----------ECTFIRVSGS 447 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-----------~~~lirv~~~ 447 (665)
+++.|.+++++.+...+... .....+.+++|+||||||||++|+++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~---------~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYF---------VKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHH---------HTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHH---------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 56889999999998877531 112456789999999999999999999987 8889999877
Q ss_pred hhh-h----------hh-------hccc-hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHH-HHHHH
Q psy15936 448 ELV-Q----------KF-------IGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT-MLELL 507 (665)
Q Consensus 448 dl~-~----------~~-------~g~~-~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~-l~~Ll 507 (665)
... . .+ .+.. ......++..+.... .++++||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC----------CCceeHHHHh
Confidence 543 1 11 0111 222344444433333 399999999875421 0122 33333
Q ss_pred HhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---CCCCccccCCCCeeEEEEeCCCCHHHH
Q psy15936 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---DILDPALLRPGRIDRKIEFPPPNEEAR 584 (665)
Q Consensus 508 ~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---~~Ld~aLlr~gRfd~~I~~~~P~~eer 584 (665)
+.. .++ .+|++||.+ +.+++++++ ||...+.|++|+.++.
T Consensus 160 ~~~------~~~-----------------------------~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 160 RSD------ANI-----------------------------SVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQL 202 (384)
T ss_dssp TSS------SCE-----------------------------EEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHH
T ss_pred cCC------cce-----------------------------EEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHH
Confidence 322 111 588889877 678899888 8877999999999999
Q ss_pred HHHHHHhhcc----CCCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 585 LDILRIHSRK----MNLTRGINLRKIAELMP---GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 585 ~~Il~~~l~~----~~~~~~vdl~~la~~t~---g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
.+|++.++.. ..++ +..++.++..+. | +.+.+.++|+.|...|. +...|+.+|+..++..+..
T Consensus 203 ~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYD-DEILSYIAAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 9999988763 2232 223666777765 4 57788889999987776 5568999999999988753
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=1.7e-13 Score=145.67 Aligned_cols=235 Identities=18% Similarity=0.232 Sum_probs=155.9
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
+..+....+++..|.+..++.+...+... .....++.+++|+||||+||||||+++|..++..+...++..+
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~--------~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAA--------KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHH--------HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 45566778888888888888776655420 0012355789999999999999999999999988776655432
Q ss_pred hhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 450 ~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
.. ...+..++.. ...++|+++||++.+.. ..+..+...+. .+.. + + +.. .+-.
T Consensus 88 ~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~---~~~~-~-i--~~~-~~~~ 140 (334)
T 1in4_A 88 VK------QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIE---DFQI-D-I--MIG-KGPS 140 (334)
T ss_dssp CS------HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHH---TSCC-C-C----------
T ss_pred cC------HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHH---hccc-c-e--eec-cCcc
Confidence 11 1112222221 13467999999997642 22333333222 1110 0 0 000 0000
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHH
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAE 608 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~ 608 (665)
.+.. . .......++++|+.+..+++.+++ ||...+.|++|+.+++.+|++...+..++.-+ ..+..++.
T Consensus 141 ---~~~i---~--~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 141 ---AKSI---R--IDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAK 210 (334)
T ss_dssp ----------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred ---cccc---c--ccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 0000 0 001112467789999999999999 99889999999999999999988876554422 23677888
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q psy15936 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 609 ~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~ 650 (665)
.+.| +++.+..+++.+..+|..++...||.+++.+|+..+.
T Consensus 211 ~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 211 RSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp TSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred hcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 8887 6799999999999888888778899999999998864
No 62
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.6e-14 Score=160.83 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=144.3
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCC-CchhHHHhhCCC---CCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV-KHPELFDALGIA---QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l-~~~d~f~~~g~~---~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.+++...+..|+++.|.+..++.+++++.... ..+..|...|.. ++.++||+||||||||++|+++|+.++..++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 46778888999999999999999999886521 122334433432 56799999999999999999999999999999
Q ss_pred Eechhhhhhhhccch-------HHHHHHHHHH-----HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 444 VSGSELVQKFIGEGS-------RMVRELFVMA-----REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 444 v~~~dl~~~~~g~~~-------~~~~~if~~a-----~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
+++++.......... ..+..+|..+ ....+.+++|||+|.+.... ......+..++....
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~~ 179 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKTS 179 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHCS
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhcC
Confidence 998875432211000 0011122221 12457899999999875432 122233444443311
Q ss_pred CCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC--CCCccccCCCCeeEEEEeCCCCHHHHHHHHH
Q psy15936 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID--ILDPALLRPGRIDRKIEFPPPNEEARLDILR 589 (665)
Q Consensus 512 ~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~--~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~ 589 (665)
. .+|+++|... .++ .+.+ +...+.|++|+.+++.+++.
T Consensus 180 -------~-----------------------------~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~ 219 (516)
T 1sxj_A 180 -------T-----------------------------PLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLM 219 (516)
T ss_dssp -------S-----------------------------CEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHH
T ss_pred -------C-----------------------------CEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHH
Confidence 1 2555555432 333 4443 44689999999999999998
Q ss_pred HhhccC--CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15936 590 IHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 648 (665)
Q Consensus 590 ~~l~~~--~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 648 (665)
..+... .++++ .+..|+..+.| +.+.+.++++.+ +. ....|+.+++..++..
T Consensus 220 ~i~~~~~~~i~~~-~l~~la~~s~G-diR~~i~~L~~~---~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 220 TIAIREKFKLDPN-VIDRLIQTTRG-DIRQVINLLSTI---ST--TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHTCCCCTT-HHHHHHHHTTT-CHHHHHHHHTHH---HH--HSSCCCTTHHHHHHHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHcCC-cHHHHHHHHHHH---Hh--cCCCCchHHHHHHHHh
Confidence 877553 34444 37888888866 344444444433 32 3446777777766653
No 63
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.54 E-value=1.8e-14 Score=138.12 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=113.3
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCce
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 441 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~l 441 (665)
.+.+..|+++.|.+++++++.+.+.. ..+.+++|+||||||||++|+++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34466788899999998888776642 346789999999999999999999986 6788
Q ss_pred EEEechhhhh--hhhccchHHHHHHHHHHH-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 442 IRVSGSELVQ--KFIGEGSRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 442 irv~~~dl~~--~~~g~~~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
+.+++.++.. .+.+.....+..++..+. ...+.+++|||+|.+....... ........+..++... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~~~-------~ 151 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALARG-------E 151 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHHTT-------S
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhccC-------C
Confidence 8888877652 333444455666666543 3457899999999986543211 1112233344433211 0
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHH
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDIL 588 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il 588 (665)
+ .+|++||.+. .+++++++ ||+ .+.|++|+.+++.+|+
T Consensus 152 ~-----------------------------~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 152 L-----------------------------HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp C-----------------------------CEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred e-----------------------------EEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1 4788887765 68999999 998 6999999999998875
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.4e-13 Score=145.44 Aligned_cols=222 Identities=23% Similarity=0.330 Sum_probs=151.8
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh------CCceEEEechhhh
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------ECTFIRVSGSELV 450 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l------~~~lirv~~~dl~ 450 (665)
..+++.|.+.+.+.+.+.+...+ ....+..++|+||||||||++++++++.+ +..++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~---------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLY---------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGG---------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHH---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 34678899999999888765311 12456789999999999999999999988 8889999876432
Q ss_pred h------hh----------hcc-chHHHHHHHHHHHhcC-CeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 451 Q------KF----------IGE-GSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 451 ~------~~----------~g~-~~~~~~~if~~a~~~~-p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
. .+ .+. .......++....... |.++++||++.+..... ...+..+++.++.
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~ 158 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSE 158 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhh
Confidence 1 10 111 1222344444444333 88999999998754310 1224455554433
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---CCCCccccCCCCee-EEEEeCCCCHHHHHHHH
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---DILDPALLRPGRID-RKIEFPPPNEEARLDIL 588 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---~~Ld~aLlr~gRfd-~~I~~~~P~~eer~~Il 588 (665)
..... + .+|++|+.+ ..+++.+.+ ||. ..+.|++|+.++..+++
T Consensus 159 ~~~~~-~-----------------------------~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 159 VNKSK-I-----------------------------SFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp CCC---E-----------------------------EEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHH
T ss_pred cCCCe-E-----------------------------EEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHH
Confidence 21111 1 478888876 467788877 664 48999999999999999
Q ss_pred HHhhccC----CCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 589 RIHSRKM----NLTRGINLRKIAELMP---GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 589 ~~~l~~~----~~~~~vdl~~la~~t~---g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
..++... .+.. .....++..+. | +++.+..+|+.|...|..++...|+.+|+..|+..+..
T Consensus 207 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 207 TKRAQMAFKPGVLPD-NVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HHHHHHHBCSSCSCH-HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 9877532 2221 12455666655 5 67888889999998888878889999999999887754
No 65
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=6.2e-14 Score=151.26 Aligned_cols=251 Identities=20% Similarity=0.270 Sum_probs=141.3
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhH------------------HHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCce
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPEL------------------FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 441 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~------------------f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l 441 (665)
.+.|++++++.+..++..+..+... +. ....++.++||+||||||||++|+++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLE-EVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH-HTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccc-ccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 5789999999998877432222111 01 1123566899999999999999999999999999
Q ss_pred EEEechhhh-hhhhccc-hHHHHHHHHHH----HhcCCeEEEEcCccccccCCcCCCCCCC---hHHHHHHHHHHHhhcC
Q psy15936 442 IRVSGSELV-QKFIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIGSSRIESGSGGD---SEVQRTMLELLNQLDG 512 (665)
Q Consensus 442 irv~~~dl~-~~~~g~~-~~~~~~if~~a----~~~~p~VlliDEID~l~~~~~~~~~~~~---~~~~~~l~~Ll~~~d~ 512 (665)
+.+++..+. ..+.|.. ...+..++..+ ....++++|+||+|.+...+.......+ ...+..+..+++ +
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le---~ 177 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE---G 177 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH---C
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh---c
Confidence 999998764 2343433 33344444432 1235789999999998765422211111 124555555554 2
Q ss_pred CcccCccccccccch-hhhhhhhhcccchhhhhccccEEEEEeCC-----------------------------------
Q psy15936 513 FEATKNIKGVCTEAG-MYALRERRVHVTQEDFEMAVAKVIMATNR----------------------------------- 556 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg-~~air~~r~~v~~~df~~a~~~VIatTn~----------------------------------- 556 (665)
.... +...+ .......... +......+|+++|.
T Consensus 178 ~~~~------~~~~~~~~~~~~~~~~-----i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~ 246 (376)
T 1um8_A 178 SLVN------IPPKGGRKHPEGNFIQ-----IDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLV 246 (376)
T ss_dssp CEEC---------------------C-----EECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGC
T ss_pred ccee------cccccccccCCcceEE-----EecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhc
Confidence 2000 00000 0000000000 11112246666652
Q ss_pred ------CCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHH----hhc---------c--CCCCCCCCHHHHHHHCC--CC
Q psy15936 557 ------IDILDPALLRPGRIDRKIEFPPPNEEARLDILRI----HSR---------K--MNLTRGINLRKIAELMP--GA 613 (665)
Q Consensus 557 ------~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~----~l~---------~--~~~~~~vdl~~la~~t~--g~ 613 (665)
...+.++|++ ||+..+.|++++.++...|+.. ++. + ..++++ -+..|+.... ..
T Consensus 247 ~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~ 323 (376)
T 1um8_A 247 QTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKT 323 (376)
T ss_dssp CHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTC
T ss_pred CHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhccccc
Confidence 1135677777 9999999999999999999962 111 1 112211 2556666533 24
Q ss_pred CHHHHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHH
Q psy15936 614 SGAEVKGVCTEAGMYALRERR------VHVTQEDFEMAVAK 648 (665)
Q Consensus 614 s~~dl~~l~~~A~~~A~~~~~------~~It~~d~~~Al~~ 648 (665)
..+.+.+++..+...++.+.. ..|+.+++..+.+.
T Consensus 324 ~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 324 GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp TGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 679999999999888776432 25888888765543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=1e-13 Score=163.10 Aligned_cols=224 Identities=26% Similarity=0.364 Sum_probs=155.8
Q ss_pred CCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceE
Q psy15936 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFI 442 (665)
Q Consensus 373 i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~li 442 (665)
..+..++.+.|.+.+++++.+.+.. ..+.+++|+||||||||++|++++..+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 3455778899999999998877653 356789999999999999999999987 56677
Q ss_pred EEechhhh--hhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccc
Q psy15936 443 RVSGSELV--QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520 (665)
Q Consensus 443 rv~~~dl~--~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~ 520 (665)
.++...+. ..+.+..+..++.+|..+....++++||||++.+.+..... ....+. ..++..+ -....+
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~----~~~L~~~---l~~~~~- 316 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDA----ANLIKPL---LSSGKI- 316 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHH----HHHHSSC---SSSCCC-
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHH----HHHHHHH---HhCCCe-
Confidence 77766654 34567777778888988877778999999999987654211 111121 2222211 111111
Q ss_pred cccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 521 ~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
.+|++|+.++ .+|++|.+ ||. .+.|+.|+.+++.+|++.++..+
T Consensus 317 ----------------------------~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~ 365 (758)
T 1r6b_X 317 ----------------------------RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKY 365 (758)
T ss_dssp ----------------------------EEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHH
T ss_pred ----------------------------EEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHH
Confidence 5888887643 57899998 997 79999999999999999877542
Q ss_pred ----CCCC-CCCHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHHh
Q psy15936 596 ----NLTR-GINLRKIAELMP-----GASGAEVKGVCTEAGMYALR----ERRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 596 ----~~~~-~vdl~~la~~t~-----g~s~~dl~~l~~~A~~~A~~----~~~~~It~~d~~~Al~~~~ 650 (665)
.+.- +..+..++..+. .+.+..+..++.+|+..+.. .....|+.+|+..++....
T Consensus 366 ~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 366 EAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 2211 112444554433 35677888999988766554 2356799999999998764
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.51 E-value=1.4e-13 Score=143.89 Aligned_cols=209 Identities=23% Similarity=0.319 Sum_probs=137.0
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCC----CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGI----AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ 451 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~----~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~ 451 (665)
+.+.|.+.+++.+...+... ..++ .+..+++|+||||||||++|++++..+ +.+++.+++..+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~--------~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHH--------HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hhcCCHHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 45779999999998877541 1122 123479999999999999999999988 45689999876532
Q ss_pred h-----hhccch-----HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccc
Q psy15936 452 K-----FIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521 (665)
Q Consensus 452 ~-----~~g~~~-----~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~ 521 (665)
. +.|... .....+.........+++|+||+|.+ ++..+..+..++....-..... .
T Consensus 89 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~-~-- 154 (311)
T 4fcw_A 89 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHG-R-- 154 (311)
T ss_dssp TTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTS-C--
T ss_pred cccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCC-C--
Confidence 1 111100 00012223333355689999999975 3356666666665432111000 0
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCC--------------------------CCCCCccccCCCCeeEEEE
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR--------------------------IDILDPALLRPGRIDRKIE 575 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~--------------------------~~~Ld~aLlr~gRfd~~I~ 575 (665)
........+|+|||. ...++++|++ ||+..+.
T Consensus 155 --------------------~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~ 212 (311)
T 4fcw_A 155 --------------------TVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVV 212 (311)
T ss_dssp --------------------EEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEE
T ss_pred --------------------EEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEE
Confidence 000111258999998 4468889988 9999999
Q ss_pred eCCCCHHHHHHHHHHhhccC-------CCC---CCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
Q psy15936 576 FPPPNEEARLDILRIHSRKM-------NLT---RGINLRKIAELMP--GASGAEVKGVCTEAGMYALR 631 (665)
Q Consensus 576 ~~~P~~eer~~Il~~~l~~~-------~~~---~~vdl~~la~~t~--g~s~~dl~~l~~~A~~~A~~ 631 (665)
|++|+.+++..|++.++... +.. .+..++.++.... ..+.++++++++.+...+..
T Consensus 213 ~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 213 FRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp CCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 99999999999999877642 111 1122566777654 56789999999988876654
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.51 E-value=8.8e-14 Score=154.61 Aligned_cols=209 Identities=19% Similarity=0.274 Sum_probs=137.4
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCc
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECT 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~ 440 (665)
+...+..++.+.|.+.+++++.+.+.. ....++||+||||||||++|+++|..+ +..
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 238 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 345566788899999999998877643 345689999999999999999999986 777
Q ss_pred eEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccc
Q psy15936 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520 (665)
Q Consensus 441 lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~ 520 (665)
++.+++. ..+.|..+..++.+|..+....+.|+|+| . . .+.++.+ +..+. ...+
T Consensus 239 ~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~---~----------~~a~~~L---~~~L~----~g~v- 292 (468)
T 3pxg_A 239 VMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--A---A----------IDASNIL---KPSLA----RGEL- 292 (468)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEEC--C------------------------CCCTT----SSSC-
T ss_pred EEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--C---c----------hhHHHHH---HHhhc----CCCE-
Confidence 8888877 45666666777888998888888999999 0 0 0111111 11111 1111
Q ss_pred cccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 521 ~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
.+|++||.++ .+++++++ ||. .|.|+.|+.+++.+|++.++..+
T Consensus 293 ----------------------------~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 293 ----------------------------QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp ----------------------------EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred ----------------------------EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence 6899999887 58999999 997 59999999999999999887763
Q ss_pred C----CC-CCCCHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q psy15936 596 N----LT-RGINLRKIAELMP-----GASGAEVKGVCTEAGMYALRER-RVHVTQEDFEMAVAKV 649 (665)
Q Consensus 596 ~----~~-~~vdl~~la~~t~-----g~s~~dl~~l~~~A~~~A~~~~-~~~It~~d~~~Al~~~ 649 (665)
. +. .+..+..++..+. .+.+.....++.+|+..+..+. ..+-...++...+..+
T Consensus 342 ~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 342 EAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp GGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 2 22 1112445555433 3445677888888876655443 2334445555444443
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=2.6e-13 Score=145.77 Aligned_cols=220 Identities=17% Similarity=0.228 Sum_probs=149.8
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCc--eEEEeCCCCChHHHHHHHHHHhh----CCceEEEechhhhh
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK--GVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGSELVQ 451 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~--~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~dl~~ 451 (665)
.+++.|.+.+.+.+...+... .. | ..+. .++|+||||||||+++++++..+ +..++.++|.....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~------~~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNW------LR--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHH------HH--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHH------Hc--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 357889999999998877531 11 1 2344 89999999999999999999988 56788888754321
Q ss_pred ------h----h------hccc-hHHHHHHHHHHHh-cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC
Q psy15936 452 ------K----F------IGEG-SRMVRELFVMARE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 513 (665)
Q Consensus 452 ------~----~------~g~~-~~~~~~if~~a~~-~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~ 513 (665)
. + .+.. ......+...... ..|.++++||++.+ +... +..|+..+...
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~---~~~L~~~~~~~ 152 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDI---LSTFIRLGQEA 152 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHH---HHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHH---HHHHHHHHHhC
Confidence 0 0 0111 1222222222222 44789999999975 2233 33344433322
Q ss_pred cc--cCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---CCCCccccCCCCeeE-EEEeCCCCHHHHHHH
Q psy15936 514 EA--TKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI---DILDPALLRPGRIDR-KIEFPPPNEEARLDI 587 (665)
Q Consensus 514 ~~--~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~---~~Ld~aLlr~gRfd~-~I~~~~P~~eer~~I 587 (665)
.. ..++ .+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++
T Consensus 153 ~~~~~~~~-----------------------------~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 153 DKLGAFRI-----------------------------ALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp HHHSSCCE-----------------------------EEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHH
T ss_pred CCCCcCCE-----------------------------EEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHH
Confidence 11 0011 588888877 667888877 7765 899999999999999
Q ss_pred HHHhhccCC---CCCCCCHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 588 LRIHSRKMN---LTRGINLRKIAELM---------PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 588 l~~~l~~~~---~~~~vdl~~la~~t---------~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
+...+.... .-.+..+..++..+ .| .++.+..+|+.|...|..++...|+.+|+..++......
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp HHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh
Confidence 998876411 11222367778887 44 688999999999999988888899999999998877543
No 70
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.50 E-value=3.5e-14 Score=158.38 Aligned_cols=217 Identities=17% Similarity=0.147 Sum_probs=133.1
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEech-----hhhhh
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGS-----ELVQK 452 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~-----dl~~~ 452 (665)
.+.|.++.++.+...+. .+.++||+||||||||++|+++|..++. +|..+.+. ++...
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 57788888887754442 2358999999999999999999998853 44444432 22211
Q ss_pred hhccchHHHHHHHHHHHhc---CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 453 FIGEGSRMVRELFVMAREH---APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 453 ~~g~~~~~~~~if~~a~~~---~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
+.+..... ...|..+... .++|+|+|||+.+ ++..+..+.+++..-.-.
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~---------------- 139 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFR---------------- 139 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEE----------------
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhcc----------------
Confidence 11111100 1112111111 3679999999863 345666666655431100
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCCC---CCccccCCCCeeEEEEeCCCCH-HHHHHHHHHhhccC----------
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRIDI---LDPALLRPGRIDRKIEFPPPNE-EARLDILRIHSRKM---------- 595 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~~---Ld~aLlr~gRfd~~I~~~~P~~-eer~~Il~~~l~~~---------- 595 (665)
+...........+|+|||+... +.+++++ ||...+.+++|+. +++..|++.+....
T Consensus 140 --------i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~ 209 (500)
T 3nbx_X 140 --------NGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQV 209 (500)
T ss_dssp --------CSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSB
T ss_pred --------CCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCcccee
Confidence 0000011122246888885322 3458998 9999999999987 77889988654311
Q ss_pred ---------------CCCCCCCHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q psy15936 596 ---------------NLTRGINLRKIAELM---------PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651 (665)
Q Consensus 596 ---------------~~~~~vdl~~la~~t---------~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~ 651 (665)
.+++++ .+.++... .|.|+|.+..+++.|...|..+++..|+.+|+. ++..++.
T Consensus 210 ~~e~l~~~~~~~~~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 210 TDEEYERWQKEIGEITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp CHHHHHHHHHHHTTCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred cHHHHHHHHhcCCcccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 111111 33344332 478999999999999999999999999999998 5544443
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=1.2e-13 Score=162.34 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=139.9
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCC----CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhh--
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIA----QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-- 452 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~----~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~-- 452 (665)
+.+.|.++.++.+...+.. ...|+. +..++||+||||||||++|++++..++.++++++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 4578999999988887754 233443 23479999999999999999999999999999999887542
Q ss_pred ----------hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccc
Q psy15936 453 ----------FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGV 522 (665)
Q Consensus 453 ----------~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~v 522 (665)
|.|.... ..+........++++|+|||+++ +++++..+.++++...-.....
T Consensus 530 ~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g----- 591 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNG----- 591 (758)
T ss_dssp CSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTT-----
T ss_pred HhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCC-----
Confidence 2222111 22334444566799999999974 4566777777766421000000
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-------------------------CCCccccCCCCeeEEEEeC
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-------------------------ILDPALLRPGRIDRKIEFP 577 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-------------------------~Ld~aLlr~gRfd~~I~~~ 577 (665)
+ ..+| ....||+|||... .++++|++ ||+..|.|+
T Consensus 592 ------------~----~~~~--~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~ 651 (758)
T 1r6b_X 592 ------------R----KADF--RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_dssp ------------E----EEEC--TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred ------------C----EEec--CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeC
Confidence 0 0011 1126899998754 57888888 999999999
Q ss_pred CCCHHHHHHHHHHhhccC-----------CCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q psy15936 578 PPNEEARLDILRIHSRKM-----------NLTRGINLRKIAELM--PGASGAEVKGVCTEAGMYAL 630 (665)
Q Consensus 578 ~P~~eer~~Il~~~l~~~-----------~~~~~vdl~~la~~t--~g~s~~dl~~l~~~A~~~A~ 630 (665)
+|+.+++..|++.++... .++++ -++.++... ..+..+.+..+++.+...++
T Consensus 652 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQE-ARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHH-HHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHH-HHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 999999999999887632 12211 255666543 24567899998888776544
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.49 E-value=2.2e-13 Score=160.16 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=138.3
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCC---C-ceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---P-KGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ 451 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~---~-~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~ 451 (665)
+++.|++..++.+...+... ..|... | .++||+||||||||++|++++..+ +.++++++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 46889999999998888641 223222 2 269999999999999999999987 68899999999876
Q ss_pred hhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhh
Q psy15936 452 KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531 (665)
Q Consensus 452 ~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ai 531 (665)
.+... ...++...+...++++|+|||+++ +++++..+.++++...-.....
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g-------------- 613 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKG-------------- 613 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC------------------
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCC--------------
Confidence 65443 122333444567789999999974 4567777777776532111000
Q ss_pred hhhhcccchhhhhccccEEEEEeCCCCC------------CCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC----
Q psy15936 532 RERRVHVTQEDFEMAVAKVIMATNRIDI------------LDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM---- 595 (665)
Q Consensus 532 r~~r~~v~~~df~~a~~~VIatTn~~~~------------Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~---- 595 (665)
+ .......++|+|||.+.. +.|+|++ ||+..|.|++|+.+++..|++.++..+
T Consensus 614 ---~------~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 682 (758)
T 3pxi_A 614 ---R------TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL 682 (758)
T ss_dssp ----------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHH
T ss_pred ---C------EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 001111268999997554 7888888 999999999999999999999877543
Q ss_pred ---CCCCCCC---HHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Q psy15936 596 ---NLTRGIN---LRKIAEL--MPGASGAEVKGVCTEAGMYALR 631 (665)
Q Consensus 596 ---~~~~~vd---l~~la~~--t~g~s~~dl~~l~~~A~~~A~~ 631 (665)
+....++ ++.|+.. ...++.++|+++++++...++.
T Consensus 683 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 683 KEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp HTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHH
T ss_pred HhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Confidence 1111122 4555553 2345678899999887666543
No 73
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.49 E-value=1.9e-13 Score=142.79 Aligned_cols=208 Identities=23% Similarity=0.261 Sum_probs=137.4
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-----CCceEE
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIR 443 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-----~~~lir 443 (665)
+.+...+..|+++.|.+..++.+...+.. ....+++|+||||||||++|+++++.+ +..++.
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 45667788899999999999988776643 123349999999999999999999986 345777
Q ss_pred EechhhhhhhhccchHHHHHHHHHH-H-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccc
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMA-R-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a-~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~ 521 (665)
+++++... .......+....... . ...+.++++||+|.+.. .. ...|+..++.....
T Consensus 74 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~---~~~L~~~le~~~~~----- 132 (319)
T 2chq_A 74 MNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DA---QAALRRTMEMYSKS----- 132 (319)
T ss_dssp EETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HH---HHTTGGGTSSSSSS-----
T ss_pred EeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HH---HHHHHHHHHhcCCC-----
Confidence 77765321 111111111111010 0 13478999999997632 11 23333433332111
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCC-C
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR-G 600 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~-~ 600 (665)
..+|++||.+..+.+++++ |+. .+.|++|+.+++.+++..++...++.- +
T Consensus 133 --------------------------~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~ 183 (319)
T 2chq_A 133 --------------------------CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (319)
T ss_dssp --------------------------EEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCH
T ss_pred --------------------------CeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1588889999999999998 875 899999999999999999887665532 2
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 601 INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 601 vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
..+..++..+.| +.+.+.++++.+... ...|+.+++..+
T Consensus 184 ~~l~~l~~~~~G-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 184 DGLEALIYISGG-DFRKAINALQGAAAI-----GEVVDADTIYQI 222 (319)
T ss_dssp HHHHHHHHTTTT-CHHHHHHHHHHHHHS-----SSCBCHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHH
Confidence 235667766665 566666666655432 235666666543
No 74
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=3.8e-13 Score=141.07 Aligned_cols=194 Identities=22% Similarity=0.298 Sum_probs=132.7
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC-----CceEE
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIR 443 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~-----~~lir 443 (665)
+.+...+..|+++.|.++.++.+..++.. | ...+++|+||||+|||++|+++++.+. ..++.
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 56677888899999999999999887753 1 334599999999999999999999863 34667
Q ss_pred EechhhhhhhhccchHHHHHHHHHH-H-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCcccc
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMA-R-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a-~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~ 521 (665)
+++++.... ......+....... . ...+.++++||+|.+.. ..+..+..+++... .. .
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~---~~--~-- 141 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFS---SN--V-- 141 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTT---TT--E--
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcC---CC--C--
Confidence 776653211 00011111111100 0 13478999999997632 34444555554321 11 1
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CC
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RG 600 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~ 600 (665)
.+|++||.+..+.+++.+ |+. .+.|++|+.++..++++.++...++. ++
T Consensus 142 ---------------------------~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 191 (327)
T 1iqp_A 142 ---------------------------RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTE 191 (327)
T ss_dssp ---------------------------EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECH
T ss_pred ---------------------------eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 588889999899999988 886 89999999999999999888765543 22
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHH
Q psy15936 601 INLRKIAELMPGASGAEVKGVCTEAG 626 (665)
Q Consensus 601 vdl~~la~~t~g~s~~dl~~l~~~A~ 626 (665)
..++.++..+.| +.+.+.++++.+.
T Consensus 192 ~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 192 EGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 236778887766 6777777777665
No 75
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=3.4e-13 Score=141.10 Aligned_cols=206 Identities=17% Similarity=0.191 Sum_probs=141.7
Q ss_pred hhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-----CCceEE
Q psy15936 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIR 443 (665)
Q Consensus 369 eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-----~~~lir 443 (665)
+.+...+..|+++.|.+..++.+...+.. + ...+++|+||+|+|||++|+++++.+ +..++.
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------G--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 34556777888999999999999887753 1 22349999999999999999999986 345777
Q ss_pred EechhhhhhhhccchHHHHHHHHHHH-------hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCccc
Q psy15936 444 VSGSELVQKFIGEGSRMVRELFVMAR-------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 444 v~~~dl~~~~~g~~~~~~~~if~~a~-------~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~ 516 (665)
+++.+.. ....++.++.... ...+.++++||+|.+.. ..+..+..+++.... .
T Consensus 78 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~---~ 137 (323)
T 1sxj_B 78 LNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELYSN---S 137 (323)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHTTT---T
T ss_pred ecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhccCC---C
Confidence 7765521 1223344444333 23378999999997632 233344444443211 1
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~ 596 (665)
. .+|++||.+..+.+++++ |+. .+.|++|+.++..+++..++...+
T Consensus 138 --~-----------------------------~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~ 183 (323)
T 1sxj_B 138 --T-----------------------------RFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLED 183 (323)
T ss_dssp --E-----------------------------EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT
T ss_pred --c-----------------------------eEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcC
Confidence 1 578888989999999998 775 899999999999999998876544
Q ss_pred CC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q psy15936 597 LT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647 (665)
Q Consensus 597 ~~-~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~ 647 (665)
+. ++..+..++..+.| +++.+.++++.+... . ..++.+++..++.
T Consensus 184 ~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 184 VKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp CCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---H--SSBCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc---C--CCcCHHHHHHHHC
Confidence 33 12236678888766 566666666655422 1 3588888776654
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.2e-14 Score=146.97 Aligned_cols=214 Identities=12% Similarity=0.113 Sum_probs=140.7
Q ss_pred cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCceEEEechhhh
Q psy15936 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFIRVSGSELV 450 (665)
Q Consensus 381 i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~lirv~~~dl~ 450 (665)
+.|-+++.+++...+.- .+....+.+++|+||||||||++++.+++.+ +..+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~---------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD---------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHH---------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 44566677777655532 3334678899999999999999999999988 3467888986543
Q ss_pred hh----------hh------ccchHHHHHHHHHH--HhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC
Q psy15936 451 QK----------FI------GEGSRMVRELFVMA--REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 512 (665)
Q Consensus 451 ~~----------~~------g~~~~~~~~if~~a--~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~ 512 (665)
.. +. +.....+...|... ....+.|+++||+|.+.. ++.+..+++....
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~-------------q~~L~~l~~~~~~ 159 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-------------EKILQYFEKWISS 159 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC-------------THHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc-------------chHHHHHHhcccc
Confidence 21 21 22445566777654 345578999999998751 3456666654321
Q ss_pred CcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCC----CCccccCCCCee-EEEEeCCCCHHHHHHH
Q psy15936 513 FEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI----LDPALLRPGRID-RKIEFPPPNEEARLDI 587 (665)
Q Consensus 513 ~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~----Ld~aLlr~gRfd-~~I~~~~P~~eer~~I 587 (665)
.... + .+|+++|..+. +++++++ ||. ..|.|++++.++..+|
T Consensus 160 -~~s~-~-----------------------------~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 160 -KNSK-L-----------------------------SIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQM 206 (318)
T ss_dssp -SSCC-E-----------------------------EEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHH
T ss_pred -cCCc-E-----------------------------EEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHH
Confidence 1111 1 48888988764 3555666 786 5899999999999999
Q ss_pred HHHhhccCCCC------------------------------------CCCCHHHHHHH---CCCCCHHHHHHHHHHHHHH
Q psy15936 588 LRIHSRKMNLT------------------------------------RGINLRKIAEL---MPGASGAEVKGVCTEAGMY 628 (665)
Q Consensus 588 l~~~l~~~~~~------------------------------------~~vdl~~la~~---t~g~s~~dl~~l~~~A~~~ 628 (665)
++..+....-. ++.-++.+|+. ..| ..|-.-.+|+.|...
T Consensus 207 l~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 207 IITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEI 285 (318)
T ss_dssp HHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHH
Confidence 99888653210 11124555553 333 446666888888888
Q ss_pred HHHh---------cCCCCCHHHHHHHHHHHh
Q psy15936 629 ALRE---------RRVHVTQEDFEMAVAKVM 650 (665)
Q Consensus 629 A~~~---------~~~~It~~d~~~Al~~~~ 650 (665)
|.++ +...||.+++.+++..++
T Consensus 286 ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~ 316 (318)
T 3te6_A 286 SKKDFVRKGGLQKGKLVVSQEMVPRYFSEAI 316 (318)
T ss_dssp HHHHHHHHTTEETTEECCSEECCTHHHHHHH
T ss_pred HHHHHHhccCCCCCcEEeeHHHHHHHHHHHh
Confidence 8654 224577777777666654
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.45 E-value=4.8e-13 Score=157.30 Aligned_cols=192 Identities=20% Similarity=0.279 Sum_probs=132.4
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCc
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECT 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~ 440 (665)
+...+..++.+.|.+.+++++.+.+.. ....++||+||||||||++|+++|..+ +..
T Consensus 172 ~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~ 238 (758)
T 3pxi_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR 238 (758)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC
T ss_pred HHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe
Confidence 344556788899999999999877643 356689999999999999999999987 778
Q ss_pred eEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccc
Q psy15936 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520 (665)
Q Consensus 441 lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~ 520 (665)
++.+++ ...+.|..+..++.+|..+....++++|||. . .+.++ .|+..++ ...+
T Consensus 239 ~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~-----~----------~~~~~---~L~~~l~----~~~v- 292 (758)
T 3pxi_A 239 VMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA-----A----------IDASN---ILKPSLA----RGEL- 292 (758)
T ss_dssp EECC-------------CTTHHHHHHHHHTCCCCEEEECC--------------------------CCCTT----SSSC-
T ss_pred EEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEcC-----c----------hhHHH---HHHHHHh----cCCE-
Confidence 888777 4456777777888999998888899999991 0 01111 1221111 1111
Q ss_pred cccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 521 ~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
.+|++||..+ .++++++| || ..|.|+.|+.+++.+|++.++..+
T Consensus 293 ----------------------------~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~ 341 (758)
T 3pxi_A 293 ----------------------------QCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRY 341 (758)
T ss_dssp ----------------------------EEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTS
T ss_pred ----------------------------EEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6899999888 69999999 99 569999999999999999887764
Q ss_pred CCCCCCC-----HHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHh
Q psy15936 596 NLTRGIN-----LRKIAEL-----MPGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 596 ~~~~~vd-----l~~la~~-----t~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
.....++ +..++.. ..++.+.....++.+|+..+..+
T Consensus 342 ~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 342 EAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp GGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 3222222 3344443 34567788888888887766544
No 78
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=6.6e-13 Score=142.07 Aligned_cols=205 Identities=18% Similarity=0.235 Sum_probs=139.8
Q ss_pred hccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc---------
Q psy15936 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------- 440 (665)
Q Consensus 370 id~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--------- 440 (665)
.+...+..|+++.|.+..++.+...+.. | ..+..++|+||+|||||++|+++++.+++.
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 3456677888999999999999887743 1 234578999999999999999999987642
Q ss_pred ---------------eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 441 ---------------FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 441 ---------------lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
++.++... ......++.++..+.. ..+.++++||+|.+.. ..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~ 137 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFN 137 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHH
T ss_pred ccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHH
Confidence 22222211 0111224455554432 2367999999997632 3333
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCH
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 581 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~ 581 (665)
.+..++ +..... + .+|++|+.+..+.+.+++ |+ ..+.|++|+.
T Consensus 138 ~Ll~~l---e~~~~~--~-----------------------------~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~ 180 (373)
T 1jr3_A 138 ALLKTL---EEPPEH--V-----------------------------KFLLATTDPQKLPVTILS--RC-LQFHLKALDV 180 (373)
T ss_dssp HHHHHH---HSCCSS--E-----------------------------EEEEEESCGGGSCHHHHT--TS-EEEECCCCCH
T ss_pred HHHHHH---hcCCCc--e-----------------------------EEEEEeCChHhCcHHHHh--he-eEeeCCCCCH
Confidence 344443 332111 1 578888888889999988 76 6899999999
Q ss_pred HHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 582 EARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
++..++++.++...++.-+ ..+..++..+.| +++.+.++++.+...+ ...|+.+++..+
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~ 240 (373)
T 1jr3_A 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHH
Confidence 9999999998876554322 226778888876 7889999988875432 345777776554
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.44 E-value=3.9e-13 Score=160.02 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=133.5
Q ss_pred ccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCc
Q psy15936 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECT 440 (665)
Q Consensus 371 d~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~ 440 (665)
+...+..++.+.|.+++++++.+.+.. ....+++|+||||||||++|+++|..+ +..
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 228 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 228 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCe
Confidence 344566788899999999988776643 345679999999999999999999987 788
Q ss_pred eEEEechhhh--hhhhccchHHHHHHHHHHHhc-CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccC
Q psy15936 441 FIRVSGSELV--QKFIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 517 (665)
Q Consensus 441 lirv~~~dl~--~~~~g~~~~~~~~if~~a~~~-~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~ 517 (665)
++.+++..+. ..+.|.....+..+|..+... .+.|+||||++.+.+.... ....+..+.+..++...
T Consensus 229 ~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~~~------- 298 (854)
T 1qvr_A 229 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALARG------- 298 (854)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTT-------
T ss_pred EEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHhCC-------
Confidence 9999988875 456677777788888887764 6789999999988754321 11122333344444221
Q ss_pred ccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhc
Q psy15936 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR 593 (665)
Q Consensus 518 ~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~ 593 (665)
.+ .+|++||.++ .++++|++ ||+. +.|+.|+.+++.+|++.++.
T Consensus 299 ~i-----------------------------~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 299 EL-----------------------------RLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CC-----------------------------CEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred Ce-----------------------------EEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 11 4788888764 47999999 9985 99999999999999987765
Q ss_pred cC----CCC-CCCCHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHh
Q psy15936 594 KM----NLT-RGINLRKIAEL-----MPGASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 594 ~~----~~~-~~vdl~~la~~-----t~g~s~~dl~~l~~~A~~~A~~~ 632 (665)
.. ++. .+..+..++.. +..+.+.....++.+|+..+..+
T Consensus 347 ~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 347 KYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhh
Confidence 43 221 11124444443 34567888888888887665543
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.42 E-value=4.9e-13 Score=127.85 Aligned_cols=155 Identities=20% Similarity=0.334 Sum_probs=107.1
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh----------CCce
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 441 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----------~~~l 441 (665)
...+..++++.|.+.+++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +..+
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34456788899999988888776642 346789999999999999999999987 7788
Q ss_pred EEEechhhhhh--hhccchHHHHHHHHHHHhc-CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 442 IRVSGSELVQK--FIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 442 irv~~~dl~~~--~~g~~~~~~~~if~~a~~~-~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
+.+++..+... +.+.....+..++..+... .+.+++|||++.+...+.. .....+..+.+..++... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~~~~-------~ 152 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPMLARG-------E 152 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHHHTT-------C
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHHhcC-------C
Confidence 88887766432 2333444456666665544 6789999999998754421 111123333444433220 0
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC-----CCCccccCCCCeeEEEEeCCCC
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPN 580 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~-----~Ld~aLlr~gRfd~~I~~~~P~ 580 (665)
+ .+|++||.+. .+++++++ ||+ .+.+++|+
T Consensus 153 ~-----------------------------~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 153 L-----------------------------RCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp S-----------------------------CEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred e-----------------------------eEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 1 4888888765 68999999 998 59999886
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=9.4e-13 Score=140.22 Aligned_cols=196 Identities=16% Similarity=0.237 Sum_probs=132.5
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHh-hcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh-CC------
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVI-ELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-EC------ 439 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l-~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l-~~------ 439 (665)
.+++...+..|+++.|.+..++.++.++ .. ....+++|+||+|+|||+++++++..+ +.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 3567788899999999999998887766 22 122339999999999999999999964 21
Q ss_pred ----------------------ceEEEechhhhhhhhccchHHHHHHHHHHH--------------hcCCeEEEEcCccc
Q psy15936 440 ----------------------TFIRVSGSELVQKFIGEGSRMVRELFVMAR--------------EHAPSIIFMDEIDS 483 (665)
Q Consensus 440 ----------------------~lirv~~~dl~~~~~g~~~~~~~~if~~a~--------------~~~p~VlliDEID~ 483 (665)
.++.++..+.. .......+..+..+. ...|.++++||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 12222222110 001112333333321 23577999999986
Q ss_pred cccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCcc
Q psy15936 484 IGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPA 563 (665)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~a 563 (665)
+ +...++.+..+++.... . . .+|.+|+.+..+.++
T Consensus 146 L-----------~~~~~~~L~~~le~~~~---~--~-----------------------------~~Il~t~~~~~l~~~ 180 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKYSK---N--I-----------------------------RLIMVCDSMSPIIAP 180 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHSTT---T--E-----------------------------EEEEEESCSCSSCHH
T ss_pred c-----------CHHHHHHHHHHHHhhcC---C--C-----------------------------EEEEEeCCHHHHHHH
Confidence 4 33445556665554311 0 1 588899999999999
Q ss_pred ccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-C-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q psy15936 564 LLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-R-GINLRKIAELMPGASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 564 Llr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~-~vdl~~la~~t~g~s~~dl~~l~~~A~~~A 629 (665)
+++ |+ ..+.|++|+.++..++++..+...++. + +..+..++..+.| +.+++.++++.+...+
T Consensus 181 l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 181 IKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 998 88 789999999999999999988765543 2 3347888888876 6788888888776543
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=5.9e-13 Score=151.95 Aligned_cols=233 Identities=21% Similarity=0.177 Sum_probs=139.7
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEec----hhhhhh--
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG----SELVQK-- 452 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~----~dl~~~-- 452 (665)
..+.|.+..++.+ .+.+.-.....+.........++||+||||||||++|+++|..++..++..+. .++...
T Consensus 295 ~~I~G~e~vk~al--~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEAL--ALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHH--TTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHH--HHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3578888877766 22221110000000112233489999999999999999999998766554321 221111
Q ss_pred ---hhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhh
Q psy15936 453 ---FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMY 529 (665)
Q Consensus 453 ---~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~ 529 (665)
..+.... ....+.. ...+++||||||++. +..+..+.++++.-.- . ...+|..
T Consensus 373 ~~~~~g~~~~-~~G~l~~---A~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i-~--------i~~~g~~ 428 (595)
T 3f9v_A 373 REKGTGEYYL-EAGALVL---ADGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTV-S--------IAKAGIV 428 (595)
T ss_dssp SGGGTSSCSE-EECHHHH---HSSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSE-E--------EESSSSE
T ss_pred eccccccccc-cCCeeEe---cCCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEE-E--------EecCCcE
Confidence 1110000 0011222 234799999999753 3456666666653210 0 0000100
Q ss_pred hhhhhhcccchhhhhccccEEEEEeCCCC-------------CCCccccCCCCeeE-EEEeCCCCHHHHHHHHHHhhccC
Q psy15936 530 ALRERRVHVTQEDFEMAVAKVIMATNRID-------------ILDPALLRPGRIDR-KIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 530 air~~r~~v~~~df~~a~~~VIatTn~~~-------------~Ld~aLlr~gRfd~-~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
.. ..+...||+|||+.. .+++++++ |||. .+..+.|+.+ ...|+++.+...
T Consensus 429 ~~------------~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 429 AK------------LNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EE------------ECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EE------------ecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 00 011126999999886 89999999 9986 5555677777 778887766532
Q ss_pred CC-------C-------------------CCCCHHHHHHH--------------CCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy15936 596 NL-------T-------------------RGINLRKIAEL--------------MPGASGAEVKGVCTEAGMYALRERRV 635 (665)
Q Consensus 596 ~~-------~-------------------~~vdl~~la~~--------------t~g~s~~dl~~l~~~A~~~A~~~~~~ 635 (665)
.. + .+...+.|... ..+.|.|.+..+++.|...|..+.+.
T Consensus 494 ~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~ 573 (595)
T 3f9v_A 494 SGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKA 573 (595)
T ss_dssp CCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSC
T ss_pred hccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcC
Confidence 21 0 11123344443 34679999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy15936 636 HVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 636 ~It~~d~~~Al~~~~~~ 652 (665)
.|+.+|+.+|++-+...
T Consensus 574 ~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 574 EVTREDAERAINIMRLF 590 (595)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999877654
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=1.3e-12 Score=155.45 Aligned_cols=209 Identities=23% Similarity=0.324 Sum_probs=138.7
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCC----CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIA----QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV 450 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~----~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~ 450 (665)
++++.|.+..++.+...+.. ...|.. +..++||+||||||||++|++++..+ +.++++++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~--------~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRR--------ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHH--------HGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 45688999999999888754 122322 22489999999999999999999998 7899999998764
Q ss_pred hhh------------hccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCc
Q psy15936 451 QKF------------IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKN 518 (665)
Q Consensus 451 ~~~------------~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~ 518 (665)
... .|... ...+........++++|||||+.+ ++++++.+.++++...-.+...
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g- 694 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHG- 694 (854)
T ss_dssp SSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSS-
T ss_pred chhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCC-
Confidence 321 12111 123334444466789999999974 4466666666665322111000
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCC--------------------------CCCCCccccCCCCeeE
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR--------------------------IDILDPALLRPGRIDR 572 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~--------------------------~~~Ld~aLlr~gRfd~ 572 (665)
. .-||. ...||+|||. ...+.|+|++ ||+.
T Consensus 695 ~--------------------~vd~~--~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~ 750 (854)
T 1qvr_A 695 R--------------------TVDFR--NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDE 750 (854)
T ss_dssp C--------------------CEECT--TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSB
T ss_pred C--------------------EeccC--CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCe
Confidence 0 00111 1158999996 2346778887 9999
Q ss_pred EEEeCCCCHHHHHHHHHHhhccC-------CCC---CCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHh
Q psy15936 573 KIEFPPPNEEARLDILRIHSRKM-------NLT---RGINLRKIAELMP--GASGAEVKGVCTEAGMYALRE 632 (665)
Q Consensus 573 ~I~~~~P~~eer~~Il~~~l~~~-------~~~---~~vdl~~la~~t~--g~s~~dl~~l~~~A~~~A~~~ 632 (665)
.+.|.+|+.++...|++.++... +.. .+.-++.|+.... .++.++++++++.+...++.+
T Consensus 751 ~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 751 IVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp CCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887632 111 1112566776654 568899999999987766543
No 84
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=5e-12 Score=134.36 Aligned_cols=209 Identities=22% Similarity=0.275 Sum_probs=134.8
Q ss_pred hhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCC-----ceE
Q psy15936 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFI 442 (665)
Q Consensus 368 ~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~-----~li 442 (665)
.+.+...+..|+++.|.+.+++.+...+.. | ...+++|+||||||||++|+++|..+.+ .+.
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 356677888899999999999988777653 2 2224999999999999999999998743 355
Q ss_pred EEechhhhhhhhccchHHHHHHHHHHHh------cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCccc
Q psy15936 443 RVSGSELVQKFIGEGSRMVRELFVMARE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 443 rv~~~dl~~~~~g~~~~~~~~if~~a~~------~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~ 516 (665)
.++.++.. ....++..+..... ..+.++++||+|.+.. ..++.+..+++.... .
T Consensus 81 ~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~---~ 140 (340)
T 1sxj_C 81 ELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYTK---N 140 (340)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTT---T
T ss_pred EEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCCC---C
Confidence 55554421 11222333322221 2368999999997632 334445555543221 1
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCC
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~ 596 (665)
. .+|++||.+..+.+++++ |+. .+.|++++.++..+++...+...+
T Consensus 141 --~-----------------------------~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 141 --T-----------------------------RFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp --E-----------------------------EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred --e-----------------------------EEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 1 478888999999999998 875 789999999999999998885433
Q ss_pred --CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy15936 597 --LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645 (665)
Q Consensus 597 --~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~A 645 (665)
+++ .....++..+.| ..+.+.++++.+...+...+...|+.+++..+
T Consensus 187 ~~i~~-~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 187 LKLSP-NAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp CCBCH-HHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred CCCCH-HHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 332 235667777665 45555555544432221111225777766543
No 85
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.33 E-value=1.4e-14 Score=149.83 Aligned_cols=238 Identities=13% Similarity=0.123 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEec---cCCeeeeecCCcccccCCC
Q psy15936 267 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKVH---PEGKFVVDIDKNIDINDVT 339 (665)
Q Consensus 267 ~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka~---~~~~f~~~~~~~l~~~~~~ 339 (665)
+.|++++|++..++++++.+.++..+++.|...++.+++|+ |||+|||.++++- .+..|+...++++..++.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~ 86 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence 34445555889999999999999999999999999998887 9999999998873 3446777778888777766
Q ss_pred CCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccc-cCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEE
Q psy15936 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM-VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLL 418 (665)
Q Consensus 340 ~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~-i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL 418 (665)
+..+.+ +.+|..+....++++++|+++.+...+... .....+...++.. ...|....+.+++
T Consensus 87 ~~~~~i-----~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~------------~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 87 ESERAV-----RQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLT------------EMDGLEARQQVFI 149 (274)
T ss_dssp HHHHHH-----HHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHH------------HHHTCCSTTCEEE
T ss_pred HHHHHH-----HHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHH------------hhhcccccCCEEE
Confidence 554433 566776666778999999999876543211 1111111111111 1225556667777
Q ss_pred eCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChH
Q psy15936 419 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE 498 (665)
Q Consensus 419 ~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~ 498 (665)
.+ +.+.++.+|.++.|+++.+....++.++...+..+++.........-+-+++|
T Consensus 150 ia---------~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~---------------- 204 (274)
T 2x8a_A 150 MA---------ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN---------------- 204 (274)
T ss_dssp EE---------EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCC----------------
T ss_pred Ee---------ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccC----------------
Confidence 77 66677788999999999988888888888889999987654322111223444
Q ss_pred HHHHHHHHHHh--hcCCcccCccccccccchhhhhhhh-----------hcccchhhhhccccEEE
Q psy15936 499 VQRTMLELLNQ--LDGFEATKNIKGVCTEAGMYALRER-----------RVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 499 ~~~~l~~Ll~~--~d~~~~~~~i~~vc~eAg~~air~~-----------r~~v~~~df~~a~~~VI 551 (665)
+..+... ++||++++ +.++|.+|++.++++. ...++.+||+.|...+.
T Consensus 205 ----~~~la~~~~~~g~sgad-l~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ 265 (274)
T 2x8a_A 205 ----LEAIAGDLRCDCYTGAD-LSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVR 265 (274)
T ss_dssp ----HHHHHTCSGGGSCCHHH-HHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCC
T ss_pred ----HHHHHHhhccCCcCHHH-HHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhc
Confidence 5666665 45999998 9999999999999863 34688889988876554
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.32 E-value=4.4e-12 Score=105.54 Aligned_cols=76 Identities=99% Similarity=1.407 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 577 PPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 577 ~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
|+|+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|++++...|+.+||..|++++..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999998999999999999999999999999999999999999999999999999998764
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=3.9e-12 Score=107.89 Aligned_cols=77 Identities=95% Similarity=1.320 Sum_probs=73.5
Q ss_pred eCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q psy15936 576 FPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652 (665)
Q Consensus 576 ~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~ 652 (665)
-.+|+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+.+||..|++++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 36899999999999999999998999999999999999999999999999999999998999999999999999875
No 88
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.30 E-value=3.5e-11 Score=123.02 Aligned_cols=212 Identities=18% Similarity=0.230 Sum_probs=122.4
Q ss_pred CCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhhhhh
Q psy15936 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSELVQK 452 (665)
Q Consensus 376 ~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl~~~ 452 (665)
.+|+++.|.+...+.+.+.+... ...+.+++|+||||||||++|++++..+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 35778889998888887766541 12457899999999999999999999875 67999999875322
Q ss_pred h-----hccchHH-------HHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcC--CcccCc
Q psy15936 453 F-----IGEGSRM-------VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG--FEATKN 518 (665)
Q Consensus 453 ~-----~g~~~~~-------~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~--~~~~~~ 518 (665)
. .|..... ....+.. ..++++|||||+.+. ...+..+..+++...- ..+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCccc
Confidence 1 1111000 0011222 235799999999763 3456666666654210 000000
Q ss_pred cccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCCH--HHHHHHH
Q psy15936 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPNE--EARLDIL 588 (665)
Q Consensus 519 i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~~--eer~~Il 588 (665)
......+|+|||.+ ..+.++|.+ ||. ..+.+|++.. ++...++
T Consensus 138 -------------------------~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~ 190 (265)
T 2bjv_A 138 -------------------------LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMA 190 (265)
T ss_dssp -------------------------EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHH
T ss_pred -------------------------ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHH
Confidence 00112689999874 246788887 885 3566666654 5556666
Q ss_pred HHhhcc----CCCCC--CCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy15936 589 RIHSRK----MNLTR--GIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 642 (665)
Q Consensus 589 ~~~l~~----~~~~~--~vd---l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~ 642 (665)
+.++.. .+... .++ +..+....-..+.+++.++++.+...+ ....|+.+|+
T Consensus 191 ~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 191 EYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 555432 33221 333 334444432346789999999887654 2345666555
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.26 E-value=1.2e-11 Score=105.30 Aligned_cols=85 Identities=42% Similarity=0.658 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchhh-h
Q psy15936 580 NEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN-M 658 (665)
Q Consensus 580 ~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~-~ 658 (665)
+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+.+||..|++++.+....+. .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 567999999999999999999999999999999999999999999999999999999999999999999998775544 3
Q ss_pred chHhhh
Q psy15936 659 SIKKLW 664 (665)
Q Consensus 659 ~~~~~~ 664 (665)
..+..|
T Consensus 82 ~~y~~w 87 (88)
T 3vlf_B 82 SRYMQY 87 (88)
T ss_dssp ------
T ss_pred hHHhcc
Confidence 444456
No 90
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.22 E-value=1.8e-11 Score=128.36 Aligned_cols=209 Identities=19% Similarity=0.263 Sum_probs=123.9
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh---
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF--- 453 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~--- 453 (665)
++.|.+...+.+.+.+... ...+.++||+||||||||++|++++... +.+|+.++|..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4678888888887777541 2356789999999999999999999965 5789999988753321
Q ss_pred --hccch----H---HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC--cccCccccc
Q psy15936 454 --IGEGS----R---MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF--EATKNIKGV 522 (665)
Q Consensus 454 --~g~~~----~---~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~--~~~~~i~~v 522 (665)
.|... . .....|..+ .++++|+|||+.+.. ..+..+..+++...-. .+....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~--- 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTI--- 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCC---
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccc---
Confidence 11100 0 011233332 346999999997632 4455555555432110 000000
Q ss_pred cccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCC--HHHHHHHHHHhh
Q psy15936 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPN--EEARLDILRIHS 592 (665)
Q Consensus 523 c~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~--~eer~~Il~~~l 592 (665)
....+||+|||.. ..+++.|.. ||. ..|.+|++. .++...+++.++
T Consensus 135 ----------------------~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 135 ----------------------SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp ----------------------BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHH
T ss_pred ----------------------cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHH
Confidence 0112689999875 235666666 764 346666665 355566776665
Q ss_pred ccC----CCC-CCCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy15936 593 RKM----NLT-RGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 643 (665)
Q Consensus 593 ~~~----~~~-~~vd---l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~ 643 (665)
... +.. ..++ +..+....-..+.+++.++++.|...+ ....|+.+|+.
T Consensus 191 ~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 191 RRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred HHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 432 211 1233 445555542336789999999887654 23345555543
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=2.8e-10 Score=123.20 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=139.9
Q ss_pred cccCCChHHHHHHHHHh-hcCCCchhHHHhhCC-CCCceEEE--eCCCCChHHHHHHHHHHhh---------CCceEEEe
Q psy15936 379 EMVGGLDNQIKEIKEVI-ELPVKHPELFDALGI-AQPKGVLL--YGPPGTGKTLLARAVAHHT---------ECTFIRVS 445 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l-~l~l~~~d~f~~~g~-~~~~~vLL--~GppGtGKT~LA~aia~~l---------~~~lirv~ 445 (665)
+.+.|.+++++.+.+.+ ... .. |. ..+..++| +||+|+|||++++.+++.+ +..+++++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~------~~--~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRL------LS--GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHH------HT--SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHH------hc--CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 46789999999988876 431 01 11 24568899 9999999999999999876 44677777
Q ss_pred chhh------hhhh----h------ccc-hHHHHHHHHHHH-hcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 446 GSEL------VQKF----I------GEG-SRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 446 ~~dl------~~~~----~------g~~-~~~~~~if~~a~-~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
+... ...+ . +.. ......+..... ...|.++++||++.+.... ..+.+. +..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~---l~~l~ 165 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAED---LYTLL 165 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHH---HHHHH
Confidence 6421 1110 0 111 112222222222 2457899999999874321 011222 33333
Q ss_pred HhhcCCc--c-cCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---CCC---ccccCCCCeeEEEEeCC
Q psy15936 508 NQLDGFE--A-TKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---ILD---PALLRPGRIDRKIEFPP 578 (665)
Q Consensus 508 ~~~d~~~--~-~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---~Ld---~aLlr~gRfd~~I~~~~ 578 (665)
+.+.... + ...+ .+|++|+.++ .++ +.+.+ ++...+.|++
T Consensus 166 ~~~~~~~~~~~~~~v-----------------------------~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~ 214 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRI-----------------------------GFLLVASDVRALSYMREKIPQVES--QIGFKLHLPA 214 (412)
T ss_dssp THHHHSCCTTSCCBE-----------------------------EEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCC
T ss_pred HHHHhcccCCCCceE-----------------------------EEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCC
Confidence 3332211 1 0111 4777776554 233 55556 5655699999
Q ss_pred CCHHHHHHHHHHhhccCCCC---CCCCHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy15936 579 PNEEARLDILRIHSRKMNLT---RGINLRKIAELMP------GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649 (665)
Q Consensus 579 P~~eer~~Il~~~l~~~~~~---~~vdl~~la~~t~------g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~ 649 (665)
++.++..+++...+...... .+.....++..+. | +++.+..+|..|...|..++...++.+++..++...
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999998776532211 1223567777877 6 688999999999888887777889999998888665
Q ss_pred h
Q psy15936 650 M 650 (665)
Q Consensus 650 ~ 650 (665)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 3
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.19 E-value=2.7e-11 Score=101.91 Aligned_cols=81 Identities=31% Similarity=0.488 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcchhhh
Q psy15936 579 PNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658 (665)
Q Consensus 579 P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~~~~~ 658 (665)
.+.++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|+++....|+.+||..|++++.++.+ +.+
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~-~~l 79 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE-QEH 79 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch-HHH
Confidence 3679999999999999999899999999999999999999999999999999998899999999999999999877 544
Q ss_pred ch
Q psy15936 659 SI 660 (665)
Q Consensus 659 ~~ 660 (665)
..
T Consensus 80 ~~ 81 (83)
T 3aji_B 80 EF 81 (83)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 93
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.17 E-value=1e-10 Score=134.03 Aligned_cols=235 Identities=23% Similarity=0.316 Sum_probs=138.5
Q ss_pred cCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCce---EEEechh
Q psy15936 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF---IRVSGSE 448 (665)
Q Consensus 372 ~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l---irv~~~d 448 (665)
.+++..++++.|.+..++.+...+. .+.+++|+||||||||++|++++..+.... +.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 5677888899999999888766553 345899999999999999999999875332 1111100
Q ss_pred hh--------------hh------------------------------------------hhccchHHHHHHHH------
Q psy15936 449 LV--------------QK------------------------------------------FIGEGSRMVRELFV------ 466 (665)
Q Consensus 449 l~--------------~~------------------------------------------~~g~~~~~~~~if~------ 466 (665)
.. .. +..........+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 00 00 00000000011111
Q ss_pred -----------------HHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCC-cccCccccccccchh
Q psy15936 467 -----------------MAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF-EATKNIKGVCTEAGM 528 (665)
Q Consensus 467 -----------------~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~-~~~~~i~~vc~eAg~ 528 (665)
......+.++||||++.+ ++..+..+..+++.-.-. .+....
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~--------- 238 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEM--------- 238 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTT---------
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccc---------
Confidence 011134579999999975 346666677666532110 000000
Q ss_pred hhhhhhhcccchhhhhccccEEEEEeCCC--CCCCccccCCCCee---EEEEeCCC---CHHHHHHHHHHhhccCC---C
Q psy15936 529 YALRERRVHVTQEDFEMAVAKVIMATNRI--DILDPALLRPGRID---RKIEFPPP---NEEARLDILRIHSRKMN---L 597 (665)
Q Consensus 529 ~air~~r~~v~~~df~~a~~~VIatTn~~--~~Ld~aLlr~gRfd---~~I~~~~P---~~eer~~Il~~~l~~~~---~ 597 (665)
.....+..+.. ..-.+||+|||+. ..++++|++ ||. ..+.|+.. +.+....+++.+..... .
T Consensus 239 ----~~~~~l~~~~~-p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (604)
T 3k1j_A 239 ----SSGAMVRTEPV-PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGK 311 (604)
T ss_dssp ----SGGGGCBCSCE-ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCS
T ss_pred ----cccccCCCCcc-ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccC
Confidence 00000001111 1122699999976 679999999 986 46666532 34556666655443221 1
Q ss_pred CCCCC---HHHHHHH---CCC------CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy15936 598 TRGIN---LRKIAEL---MPG------ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 648 (665)
Q Consensus 598 ~~~vd---l~~la~~---t~g------~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~ 648 (665)
...++ +..+... ..| .+.+++.++++.|...|..+.+..|+.+|+.+|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 11222 3444442 255 278999999999999998888899999999999965
No 94
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.16 E-value=3.3e-13 Score=149.46 Aligned_cols=234 Identities=15% Similarity=0.210 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceE
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRV 344 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~ 344 (665)
+.|++..++++++.+..+ ..++.|...|..+|+++ |||+|||.++++ ..+..|+....+++...+.+.+...
T Consensus 18 i~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~ 96 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR 96 (476)
T ss_dssp CCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHH
T ss_pred hCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHH
Confidence 334778888888887764 56888999998888876 999999999887 4456788888888888888776654
Q ss_pred EecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHH-HHHhhcCCCchhHHHhhCCCCCceEEEeCCCC
Q psy15936 345 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423 (665)
Q Consensus 345 ~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l-~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppG 423 (665)
+ +.+|..+....|+++|+|++|.++..+....+|.+....++ .+++. ..+ |+....++++.+
T Consensus 97 ~-----r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~----~ld-----~~~~~~~viVIa--- 159 (476)
T 2ce7_A 97 V-----RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV----EMD-----GFDSKEGIIVMA--- 159 (476)
T ss_dssp H-----HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH----HHH-----HSCGGGTEEEEE---
T ss_pred H-----HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH----HHh-----ccCCCCCEEEEE---
Confidence 4 77788887888999999999999887765555554443333 33222 222 223345677776
Q ss_pred ChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHH
Q psy15936 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 503 (665)
Q Consensus 424 tGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l 503 (665)
+++..+.+++++++.++++....+..++...+..+++......+ +.++++ +
T Consensus 160 ------aTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~---l~~~v~--------------------l 210 (476)
T 2ce7_A 160 ------ATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP---LAEDVN--------------------L 210 (476)
T ss_dssp ------EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---BCTTCC--------------------H
T ss_pred ------ecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC---Ccchhh--------------------H
Confidence 55666778888888777777666777777777888876554432 123333 5
Q ss_pred HHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEE
Q psy15936 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553 (665)
Q Consensus 504 ~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIat 553 (665)
..+.....|+++++ +.++|.+|++.+.+.+...++.+||..+...++..
T Consensus 211 ~~la~~t~G~sgad-L~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 211 EIIAKRTPGFVGAD-LENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHTCTTCCHHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCcHHH-HHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 55777888888776 89999999999999888889999999888776643
No 95
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.08 E-value=1.1e-09 Score=116.17 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=111.0
Q ss_pred ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc-----------------------
Q psy15936 384 LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT----------------------- 440 (665)
Q Consensus 384 ~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~----------------------- 440 (665)
+++..+.+...+.. -..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 34555666555532 2345579999999999999999999987542
Q ss_pred -eEEEechhhhhhhhccchHHHHHHHHHHHh----cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcc
Q psy15936 441 -FIRVSGSELVQKFIGEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 515 (665)
Q Consensus 441 -lirv~~~dl~~~~~g~~~~~~~~if~~a~~----~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~ 515 (665)
++.+...+- -.......++.++..+.. ..+.|++|||+|.+.. .. .+.|+..++....
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a---~naLLk~lEep~~ 137 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AA---ANALLKTLEEPPA 137 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HH---HHHHHHHHTSCCT
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HH---HHHHHHHhcCCCC
Confidence 222222100 001122345566655432 2368999999998642 22 3444555544221
Q ss_pred cCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 516 TKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 516 ~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
. . .+|.+|+.++.+.+++++ |+ ..+.|++|+.++..+++....
T Consensus 138 ~--~-----------------------------~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~--- 180 (334)
T 1a5t_A 138 E--T-----------------------------WFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV--- 180 (334)
T ss_dssp T--E-----------------------------EEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---
T ss_pred C--e-----------------------------EEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---
Confidence 1 1 578888889999999999 77 479999999999999988765
Q ss_pred CCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
Q psy15936 596 NLTRGINLRKIAELMPGASGAEVKGVCTEA 625 (665)
Q Consensus 596 ~~~~~vdl~~la~~t~g~s~~dl~~l~~~A 625 (665)
.++ +..+..++..+.| +.+.+..+++.+
T Consensus 181 ~~~-~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 181 TMS-QDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp CCC-HHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred CCC-HHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 222 2235677777776 556555555443
No 96
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.07 E-value=1.2e-10 Score=108.30 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=67.7
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhcc
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE 456 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~ 456 (665)
++.|.+...+++.+.+... ...+.+|||+||||||||++|++++... +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 4678888888887776531 2355689999999999999999999976 67888 998875433
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHH
Q psy15936 457 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 507 (665)
Q Consensus 457 ~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll 507 (665)
......+..+ ..+++|+||||.+. ...+..+..++
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~-----------~~~q~~Ll~~l 100 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLT-----------REQQYHLVQLQ 100 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSC-----------HHHHHHHHHHH
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCC-----------HHHHHHHHHHH
Confidence 1223445543 34689999999763 34555555555
No 97
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.04 E-value=1.2e-10 Score=108.15 Aligned_cols=97 Identities=16% Similarity=0.260 Sum_probs=70.0
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchH
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~ 459 (665)
++.|.+...+++++.+... ...+.+++|+||||||||++|++++.... +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 4678888888888877541 13456799999999999999999999888 99999998765433
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHh
Q psy15936 460 MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509 (665)
Q Consensus 460 ~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~ 509 (665)
...++..+ .++++|+||+|.+. .+.+..+..+++.
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l~-----------~~~q~~Ll~~l~~ 101 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQYS-----------RNIQTGITFIIGK 101 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTCC-----------HHHHHHHHHHHHH
T ss_pred -hhhHHHhC---CCCeEEEeChHHCC-----------HHHHHHHHHHHHh
Confidence 34455543 35799999999763 3456666666654
No 98
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=3.9e-09 Score=110.56 Aligned_cols=142 Identities=12% Similarity=0.185 Sum_probs=97.9
Q ss_pred CChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh------CCceEEEechhhhhhhhcc
Q psy15936 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------ECTFIRVSGSELVQKFIGE 456 (665)
Q Consensus 383 G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l------~~~lirv~~~dl~~~~~g~ 456 (665)
|+++.++.++..+.. | ....+||+||||+|||++|+++|+.+ .+.++.++..+. ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~--~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C--CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 566777788777754 2 24589999999999999999999863 456777665420 12
Q ss_pred chHHHHHHHHHHHhc----CCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhh
Q psy15936 457 GSRMVRELFVMAREH----APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532 (665)
Q Consensus 457 ~~~~~~~if~~a~~~----~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air 532 (665)
....++.++..+... ...|+++||+|.+.. ..++. |+..++..+...
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~na---LLk~LEep~~~t--------------- 113 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANA---FLKALEEPPEYA--------------- 113 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHH---THHHHHSCCTTE---------------
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHH---HHHHHhCCCCCe---------------
Confidence 233456677666432 247999999998632 23344 444444332221
Q ss_pred hhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhh
Q psy15936 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592 (665)
Q Consensus 533 ~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l 592 (665)
.+|.+|+.+..+.+++++ | .+.|++|+.++..+.++..+
T Consensus 114 ----------------~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 114 ----------------VIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ----------------EEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred ----------------EEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 577888888999999999 7 78999999999999998776
No 99
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.00 E-value=1.1e-10 Score=98.08 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-hcchhhhc
Q psy15936 582 EARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMS 659 (665)
Q Consensus 582 eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~-~~~~~~~~ 659 (665)
++|.+||+.+++++++..++|+..||..|+||||+||.++|++|++.|++++...|+.+||..|++++.. ..+.+.+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~ 79 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFD 79 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHH
Confidence 4789999999999998889999999999999999999999999999999999899999999999999953 34444443
No 100
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.98 E-value=1.8e-12 Score=135.62 Aligned_cols=211 Identities=15% Similarity=0.177 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEe
Q psy15936 274 RLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVAL 346 (665)
Q Consensus 274 ~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l 346 (665)
|++..++.+++.+..+..+++.|...|+.+++++ |||+|||.++++ ..+..|+....+++..++++...+.+
T Consensus 19 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~- 97 (301)
T 3cf0_A 19 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV- 97 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHH-
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHH-
Confidence 3788889999999999999999999998888876 999999999887 44567887777777777777665443
Q ss_pred cccchhhhhhcCCCCCcchhhhhhccCCCCCccc---cC-CChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCC
Q psy15936 347 RNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM---VG-GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422 (665)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~---i~-G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~Gpp 422 (665)
+.+|..+....++++++|++|.+...+... .+ ........+...+. |+....++++.|
T Consensus 98 ----~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~------------~~~~~~~v~vi~-- 159 (301)
T 3cf0_A 98 ----REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD------------GMSTKKNVFIIG-- 159 (301)
T ss_dssp ----HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH------------SSCTTSSEEEEE--
T ss_pred ----HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh------------cccCCCCEEEEE--
Confidence 677777777789999999999876543211 11 12333444433322 333445677777
Q ss_pred CChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 423 GtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
+++..+.++.++++.++.+....++.++...+..++.......+ +.++++
T Consensus 160 -------atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---~~~~~~-------------------- 209 (301)
T 3cf0_A 160 -------ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---VAKDVD-------------------- 209 (301)
T ss_dssp -------EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---BCSSCC--------------------
T ss_pred -------ecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---CCccch--------------------
Confidence 45556677888877777766666777778888888877554433 113333
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
+..+.....++++++ +.++|.+|.+.+.++.
T Consensus 210 ~~~la~~~~g~sg~d-l~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 210 LEFLAKMTNGFSGAD-LTEICQRACKLAIRES 240 (301)
T ss_dssp HHHHHHTCSSCCHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHH
Confidence 556667788898885 9999999999988764
No 101
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.96 E-value=1.1e-11 Score=130.89 Aligned_cols=213 Identities=15% Similarity=0.168 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---cc-CCeeeeecCCcccccCCCCCce
Q psy15936 272 LRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HP-EGKFVVDIDKNIDINDVTPNCR 343 (665)
Q Consensus 272 i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~-~~~f~~~~~~~l~~~~~~~~~~ 343 (665)
++|++..++.+++.+..|..+++.|... ..+++++ |||+|||.++++ +. +..|+....+++..++.+...+
T Consensus 14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~ 92 (322)
T 1xwi_A 14 VAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEK 92 (322)
T ss_dssp SCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHH
Confidence 3337888999999999999999988753 4556665 999999999887 33 5678888888999899888776
Q ss_pred EEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCC-CCceEEEeCCC
Q psy15936 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIA-QPKGVLLYGPP 422 (665)
Q Consensus 344 ~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~-~~~~vLL~Gpp 422 (665)
.+ +.+|..+....++++|+|++|.+...+.... .....++...+. . .++ |+. ...++++.|
T Consensus 93 ~~-----~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll---~---~ld--~~~~~~~~v~vI~-- 154 (322)
T 1xwi_A 93 LV-----KNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFL---V---QMQ--GVGVDNDGILVLG-- 154 (322)
T ss_dssp HH-----HHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHH---H---HHH--CSSSCCTTEEEEE--
T ss_pred HH-----HHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHH---H---HHh--cccccCCCEEEEE--
Confidence 65 7888888888899999999999977654332 222222222221 1 112 222 245566665
Q ss_pred CChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHH
Q psy15936 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502 (665)
Q Consensus 423 GtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~ 502 (665)
+++..+.++.++.+ +.+....++.++...+..++.......+. -+++ ..
T Consensus 155 -------atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~--------------------~~ 203 (322)
T 1xwi_A 155 -------ATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTE--------------------AD 203 (322)
T ss_dssp -------EESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCH--------------------HH
T ss_pred -------ecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCH--------------------HH
Confidence 22333444444443 33333445566677778888775544331 1122 22
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
+..+.....|+++++ +..+|.+|.+.++|+..
T Consensus 204 l~~la~~t~G~sgad-l~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 204 FRELGRKTDGYSGAD-ISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHHHHTCTTCCHHH-HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 677888899999987 99999999999998754
No 102
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=4.1e-10 Score=139.77 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=96.4
Q ss_pred CCCCccccCCChHHHHHHHHHhhcCCCc----------hhHHHh------hC------------CCCCceEEEeCCCCCh
Q psy15936 374 PDSTYEMVGGLDNQIKEIKEVIELPVKH----------PELFDA------LG------------IAQPKGVLLYGPPGTG 425 (665)
Q Consensus 374 ~~~~~~~i~G~~~~~~~l~~~l~l~l~~----------~d~f~~------~g------------~~~~~~vLL~GppGtG 425 (665)
+...|++++|+++.++.+.+.+++|+.+ ++.|.. .| ++.++.+++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3478999999999999999999999854 556665 22 3455669999999999
Q ss_pred HHHHHHHHHHhh---CCceEEEechh----hh--------hhhhcc----chHHHHHHHHHHHhcCCeEEEEcCcccccc
Q psy15936 426 KTLLARAVAHHT---ECTFIRVSGSE----LV--------QKFIGE----GSRMVRELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 426 KT~LA~aia~~l---~~~lirv~~~d----l~--------~~~~g~----~~~~~~~if~~a~~~~p~VlliDEID~l~~ 486 (665)
||+||++++.+. +.+-+.++... +. ..+.+. .++.++.+|..++...|+++++|++++|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998765 33433333332 22 344455 788999999999999999999999999998
Q ss_pred CCc---CCCCCCChHHHHHHHHHHHhhcCCc
Q psy15936 487 SRI---ESGSGGDSEVQRTMLELLNQLDGFE 514 (665)
Q Consensus 487 ~~~---~~~~~~~~~~~~~l~~Ll~~~d~~~ 514 (665)
.+. +.......-..+.+.++++.+++..
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~ 1205 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhh
Confidence 843 1111112334566889999888743
No 103
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.95 E-value=1.8e-11 Score=136.31 Aligned_cols=231 Identities=16% Similarity=0.203 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
++..+.++++.+.. ...+..|...+..+++++ |||+|||.++++ ..+..|+...++++...+.+.+...+
T Consensus 36 ~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v-- 112 (499)
T 2dhr_A 36 AEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV-- 112 (499)
T ss_dssp CHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHH--
T ss_pred cHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHH--
Confidence 66777777777665 445778888888888876 999999999887 33456888888888877777655443
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCC-ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG-LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 426 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G-~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGK 426 (665)
+.+|+.+....++++++|++|.++..+....++ .++..+.+.+++.. . .|+.....+++.+
T Consensus 113 ---~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~----L-----dg~~~~~~viviA------ 174 (499)
T 2dhr_A 113 ---RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE----M-----DGFEKDTAIVVMA------ 174 (499)
T ss_dssp ---HHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH----G-----GGCCSSCCCEEEE------
T ss_pred ---HHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH----h-----cccccCccEEEEE------
Confidence 677877777788999999999998766543333 34333444443321 1 2444555666666
Q ss_pred HHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 427 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 427 T~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
+++.++.++.++++.++.+....+..++...+..++..... .+-+-++++ +..+
T Consensus 175 ---atn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~---~~~l~~dv~--------------------l~~l 228 (499)
T 2dhr_A 175 ---ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR---GKPLAEDVD--------------------LALL 228 (499)
T ss_dssp ---CCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS---SSCCCCSST--------------------THHH
T ss_pred ---ecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh---cCCCChHHH--------------------HHHH
Confidence 44445668999998888887777777888888888875322 222223333 4456
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEE
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIat 553 (665)
...+.|+++++ +.++|.+|++.+.+.++..++.+||..+...++..
T Consensus 229 A~~t~G~~gad-L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 229 AKRTPGFVGAD-LENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HTTSCSCCHHH-HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHhcCCCCHHH-HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 77778887766 88999999999998888889999998887766543
No 104
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.90 E-value=2.6e-09 Score=116.81 Aligned_cols=319 Identities=15% Similarity=0.080 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cceee----eccCCcceEEEe---ccCCeeeeecCCcccc-cCC
Q psy15936 268 KEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSY-VGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDI-NDV 338 (665)
Q Consensus 268 ~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~-~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~-~~~ 338 (665)
+.+++.|.+..++.+...+..+..++..+...... .+.++ |||+|||.++++ ..+..|+....+.+.. .|+
T Consensus 13 Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~v 92 (444)
T 1g41_A 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (444)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----C
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhccccee
Confidence 34567778889999988887777766655544322 23333 999999999887 4456777766666665 477
Q ss_pred CC-CceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEE
Q psy15936 339 TP-NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 417 (665)
Q Consensus 339 ~~-~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vL 417 (665)
|. ....+ +.+|..+. ..+++|+++.+...... + .-+++...+ +..+|.+. ...
T Consensus 93 G~d~e~~l-----r~lf~~a~----~~~~~De~d~~~~~~~~---~---~e~rvl~~L---L~~~dg~~-----~~~--- 146 (444)
T 1g41_A 93 GKEVDSII-----RDLTDSAM----KLVRQQEIAKNRARAED---V---AEERILDAL---LPPAKNQW-----GEV--- 146 (444)
T ss_dssp CCCTHHHH-----HHHHHHHH----HHHHHHHHHSCC-------------------------------------------
T ss_pred eccHHHHH-----HHHHHHHH----hcchhhhhhhhhccchh---h---HHHHHHHHH---HHHhhccc-----ccc---
Confidence 64 34443 55555432 24567777776543221 1 112222222 33344332 111
Q ss_pred EeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchH-HHHHHH-------------------------------
Q psy15936 418 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR-MVRELF------------------------------- 465 (665)
Q Consensus 418 L~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~-~~~~if------------------------------- 465 (665)
+++ ..+++..+.++.++.+.++.|....+..++.. ...++|
T Consensus 147 -----~v~--a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 219 (444)
T 1g41_A 147 -----ENH--DSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKI 219 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----ccc--cccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeH
Confidence 111 11278888999999888887766655544433 111211
Q ss_pred --------------------------HHHHhcCCeEEEEcCccccccCCcCCCCCCChH---HHHHHHHHHHhhcCCccc
Q psy15936 466 --------------------------VMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE---VQRTMLELLNQLDGFEAT 516 (665)
Q Consensus 466 --------------------------~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~---~~~~l~~Ll~~~d~~~~~ 516 (665)
..+. ...++++||||+++.... ..+.+.. +|+.|.+++ ++....
T Consensus 220 ~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae--~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~l---e~~~~~ 292 (444)
T 1g41_A 220 KDALKALIDDEAAKLINPEELKQKAIDAVE--QNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLV---EGSTVS 292 (444)
T ss_dssp ------CCGGGSCSSCCHHHHHHHHHHHHH--HHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHH---HCCEEE
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHhc--cCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHh---cccccc
Confidence 1211 235899999999986532 1233322 344555554 432110
Q ss_pred CccccccccchhhhhhhhhcccchhhhhccccEEEEEe----CCCCCCCccccCCCCeeEEEEeCCCCHHHHHHHHH---
Q psy15936 517 KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT----NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILR--- 589 (665)
Q Consensus 517 ~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT----n~~~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~--- 589 (665)
.. | ..++.....+|+|+ +.+..+-|.|+. ||+.+|.|+.++.++..+|+.
T Consensus 293 ~~----------~-----------~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~ 349 (444)
T 1g41_A 293 TK----------H-----------GMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH 349 (444)
T ss_dssp ET----------T-----------EEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred cc----------c-----------ceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHH
Confidence 00 0 11233334677776 234445578887 999999999999999999993
Q ss_pred H-----h---hc--cCCCC-CCCCHHHHHH-------HCCCCCHHHHHHHHHHHHHHHHHh------cCCCCCHHHHHHH
Q psy15936 590 I-----H---SR--KMNLT-RGINLRKIAE-------LMPGASGAEVKGVCTEAGMYALRE------RRVHVTQEDFEMA 645 (665)
Q Consensus 590 ~-----~---l~--~~~~~-~~vdl~~la~-------~t~g~s~~dl~~l~~~A~~~A~~~------~~~~It~~d~~~A 645 (665)
. + +. +..+. .+.-+..|+. .+...-.|.++.++..++..+..+ ....||.+++...
T Consensus 350 ~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 429 (444)
T 1g41_A 350 ASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADA 429 (444)
T ss_dssp TCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHH
T ss_pred HhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHh
Confidence 1 1 11 11111 1112455555 345555677776666655554433 1235889988876
Q ss_pred HHHH
Q psy15936 646 VAKV 649 (665)
Q Consensus 646 l~~~ 649 (665)
+...
T Consensus 430 l~~~ 433 (444)
T 1g41_A 430 LGEV 433 (444)
T ss_dssp HTTT
T ss_pred cCcc
Confidence 6544
No 105
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.88 E-value=1.1e-11 Score=130.77 Aligned_cols=212 Identities=14% Similarity=0.163 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
++..++.+++.+..+..+++.|... ..++.++ |||+|||.++++ ..+..|+....+++..++.+...+.+
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~-- 99 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGN-RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLV-- 99 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTT-CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHH--
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHH--
Confidence 7888999999999999999888774 4555655 999999999887 44667888888888888888776655
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCcccc-CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV-GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 426 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i-~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGK 426 (665)
+.+|..+....++++++|++|.+...+.+.. .........+...+ +... ....++++.|
T Consensus 100 ---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l----------~~~~-~~~~~v~vi~------ 159 (322)
T 3eie_A 100 ---KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQM----------NGVG-NDSQGVLVLG------ 159 (322)
T ss_dssp ---HHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHH----------GGGG-TSCCCEEEEE------
T ss_pred ---HHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHh----------cccc-ccCCceEEEE------
Confidence 7888888888899999999999987653321 22333333332222 1111 2334566666
Q ss_pred HHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 427 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 427 T~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
+++..+.++.++.+ +.+....+..++...+..++.......+. .+++ ..+..+
T Consensus 160 ---atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~--------------------~~l~~l 212 (322)
T 3eie_A 160 ---ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC--VLTK--------------------EDYRTL 212 (322)
T ss_dssp ---EESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCH--------------------HHHHHH
T ss_pred ---ecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCH--------------------HHHHHH
Confidence 23334445544443 33333345556777778888875544321 1111 126778
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcc
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVH 537 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~ 537 (665)
.....|+++++ +..+|.+|.+.++++....
T Consensus 213 a~~t~g~sg~d-i~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 213 GAMTEGYSGSD-IAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HHTTTTCCHHH-HHHHHHHHTTHHHHHHHHC
T ss_pred HHHcCCCCHHH-HHHHHHHHHHHHHHHHhhh
Confidence 88889998887 8999999999999987654
No 106
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=3e-11 Score=124.68 Aligned_cols=243 Identities=17% Similarity=0.282 Sum_probs=164.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---c
Q psy15936 248 EGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---H 320 (665)
Q Consensus 248 e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~ 320 (665)
+..+++.+++|.| ++.+++.+.+.+..+..+++.+...|...+.++ |||+|||.++++ .
T Consensus 9 ~~~~~~~~~~i~G--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 9 DERPNVRYEDIGG--------------LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp ESSCCCCGGGSCS--------------CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHhcC--------------HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445555666555 778888999999999999999999988887766 999999999887 4
Q ss_pred cCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCCh-HHHHHHHHHhhcCC
Q psy15936 321 PEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD-NQIKEIKEVIELPV 399 (665)
Q Consensus 321 ~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~-~~~~~l~~~l~l~l 399 (665)
.+..|+....+.+...+.+...... ..++..+....++++++|+++.+...+.+...+.+ .....+...+..
T Consensus 75 ~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~-- 147 (285)
T 3h4m_A 75 TNATFIRVVGSELVKKFIGEGASLV-----KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE-- 147 (285)
T ss_dssp TTCEEEEEEGGGGCCCSTTHHHHHH-----HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH--
T ss_pred hCCCEEEEehHHHHHhccchHHHHH-----HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH--
Confidence 4567777777777777776655444 66677777778899999999998766554443333 333334333321
Q ss_pred CchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEc
Q psy15936 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 479 (665)
Q Consensus 400 ~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliD 479 (665)
++ ++....++++.|-+ +..+.++.++.+.++.+....+..++...+..++.......+ +-+
T Consensus 148 -----~~--~~~~~~~~~vI~tt---------n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---~~~ 208 (285)
T 3h4m_A 148 -----MD--GFDARGDVKIIGAT---------NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---LAE 208 (285)
T ss_dssp -----HH--TTCSSSSEEEEEEC---------SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---BCT
T ss_pred -----hh--CCCCCCCEEEEEeC---------CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---CCC
Confidence 11 33344456565522 223445555544444444445556677777788876543321 112
Q ss_pred CccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 480 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 480 EID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
+++ +..+.....++++.+ +..+|.+|.+.++++.+..++.+|+..+...++
T Consensus 209 ~~~--------------------~~~l~~~~~g~~~~~-i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 209 DVN--------------------LEEIAKMTEGCVGAE-LKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp TCC--------------------HHHHHHHCTTCCHHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred cCC--------------------HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 222 567778888887766 889999999999999999999999998876554
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=1.2e-08 Score=97.74 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=59.1
Q ss_pred hhCCCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEechhhhhhhhccchHH-HHHHHHHHHhcCCeEEEEcCc
Q psy15936 407 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGSELVQKFIGEGSRM-VRELFVMAREHAPSIIFMDEI 481 (665)
Q Consensus 407 ~~g~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~dl~~~~~g~~~~~-~~~if~~a~~~~p~VlliDEI 481 (665)
.+...++.+++|+||||||||+|+++++..+ +..++.++..++...+....... ...++.. ...|.++++||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCC
Confidence 3344567899999999999999999999877 55667777776654332110000 0011222 236789999998
Q ss_pred cccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 482 DSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 482 D~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
+.. +.++..+..+..+++..
T Consensus 110 ~~~---------~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 110 GSE---------RLSDWQRELISYIITYR 129 (180)
T ss_dssp SSS---------CCCHHHHHHHHHHHHHH
T ss_pred CCC---------cCCHHHHHHHHHHHHHH
Confidence 742 23445566666766543
No 108
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.84 E-value=6.5e-11 Score=120.45 Aligned_cols=227 Identities=15% Similarity=0.189 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
++..++++.+.+.. ..+++.++..+..++.++ |||+|||.++++ ..+..|+....+++...+.+.+.+.+
T Consensus 17 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 93 (257)
T 1lv7_A 17 CDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV-- 93 (257)
T ss_dssp CHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHH--
T ss_pred cHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHH--
Confidence 66777777776654 455667777777777765 999999999887 33446777777788777777665433
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHH-HHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI-KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 426 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~-~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGK 426 (665)
+.+|..+....++++++|++|.++..+....+|..... +.+..++.. ++ ++.....+++.+
T Consensus 94 ---~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~-------l~--~~~~~~~~~vI~------ 155 (257)
T 1lv7_A 94 ---RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-------MD--GFEGNEGIIVIA------ 155 (257)
T ss_dssp ---HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH-------HH--TCCSSSCEEEEE------
T ss_pred ---HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHH-------hh--CcccCCCEEEEE------
Confidence 56677776777889999999999877655444333322 333333321 12 233344455544
Q ss_pred HHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 427 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 427 T~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
+++..+.++.++.+.++.+....+..++...+..++.......+ +-++++ +..+
T Consensus 156 ---~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~---l~~~~~--------------------~~~l 209 (257)
T 1lv7_A 156 ---ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---LAPDID--------------------AAII 209 (257)
T ss_dssp ---EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---BCTTCC--------------------HHHH
T ss_pred ---eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC---CCcccc--------------------HHHH
Confidence 22222345666655555554444555566666777766443322 112222 3445
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccE
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~ 549 (665)
.....|+++++ +.++|.+|.+.+.+++...++.+||..+...
T Consensus 210 a~~~~G~~~~d-l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 210 ARGTPGFSGAD-LANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHTCTTCCHHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHcCCCCHHH-HHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 66777887776 8899999999999998889999999877543
No 109
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.82 E-value=1.2e-11 Score=132.47 Aligned_cols=217 Identities=15% Similarity=0.179 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCC
Q psy15936 269 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPN 341 (665)
Q Consensus 269 ~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~ 341 (665)
|+++.|++..++.+++.+..+..+++.|.. +..++.++ |||+|||.++++ ..+..|+....+++...+.+..
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~ 128 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---C
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchH
Confidence 344555888899999999999999988886 44555554 999999999887 4456788877788888887776
Q ss_pred ceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCC
Q psy15936 342 CRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421 (665)
Q Consensus 342 ~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~Gp 421 (665)
.+.+ +.+|..+....++++|+|++|.+...+... ......++...+ +. .++... ....++++.|
T Consensus 129 ~~~~-----~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~l---l~---~l~~~~-~~~~~v~vI~- 192 (355)
T 2qp9_X 129 EKLV-----KQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTEL---LV---QMNGVG-NDSQGVLVLG- 192 (355)
T ss_dssp HHHH-----HHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHH---HH---HHHHCC----CCEEEEE-
T ss_pred HHHH-----HHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHH---HH---Hhhccc-ccCCCeEEEe-
Confidence 6554 777888777789999999999998765432 122222322222 11 122221 1234566665
Q ss_pred CCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 422 pGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
+++..+.++.++.+ +.+....+..++...+..++.......+. .+++.
T Consensus 193 --------atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~-------------------- 240 (355)
T 2qp9_X 193 --------ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKE-------------------- 240 (355)
T ss_dssp --------EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHH--------------------
T ss_pred --------ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHH--------------------
Confidence 22223344444333 23333344556667777888775544331 11222
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
.+..+.....|+++++ +.++|.+|.+.++++..
T Consensus 241 ~l~~la~~t~G~sg~d-l~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 241 DYRTLGAMTEGYSGSD-IAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp HHHHHHHHTTTCCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 2677888889998887 99999999999998754
No 110
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.73 E-value=6.7e-08 Score=125.08 Aligned_cols=148 Identities=19% Similarity=0.297 Sum_probs=91.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh-hCCceEEEechhhhhhhhccchHHHHHHHHHHH---------------hcCCeE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH-TECTFIRVSGSELVQKFIGEGSRMVRELFVMAR---------------EHAPSI 475 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~-l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~---------------~~~p~V 475 (665)
.+.++||+||||||||++|+.++.. .+..++.++++.... ...+...+.... ...+.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 4579999999999999999665544 466777777765421 122233333221 122469
Q ss_pred EEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeC
Q psy15936 476 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555 (665)
Q Consensus 476 lliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn 555 (665)
+|+||+|.....+ . +.......+.++++. .++-... ....+. + .-..+|+|+|
T Consensus 1340 lFiDEinmp~~d~----y-g~q~~lelLRq~le~-gg~yd~~----------------~~~~~~---~--~~i~lIaA~N 1392 (2695)
T 4akg_A 1340 LFCDEINLPKLDK----Y-GSQNVVLFLRQLMEK-QGFWKTP----------------ENKWVT---I--ERIHIVGACN 1392 (2695)
T ss_dssp EEEETTTCSCCCS----S-SCCHHHHHHHHHHHT-SSEECTT----------------TCCEEE---E--ESEEEEEEEC
T ss_pred EEecccccccccc----c-CchhHHHHHHHHHhc-CCEEEcC----------------CCcEEE---e--cCEEEEEecC
Confidence 9999999532221 1 122334445555432 1110000 000000 0 1126899999
Q ss_pred CCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccC
Q psy15936 556 RID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595 (665)
Q Consensus 556 ~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~ 595 (665)
++. .++++|+| || ..+.++.|+.+++..|+..+++.+
T Consensus 1393 pp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1393 PPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 995 79999999 99 789999999999999999887643
No 111
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.72 E-value=2.8e-10 Score=125.56 Aligned_cols=221 Identities=14% Similarity=0.160 Sum_probs=139.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---cc-
Q psy15936 250 FKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HP- 321 (665)
Q Consensus 250 ~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~- 321 (665)
.+.+.|++|+| ++..++.+.+.+..+..+++.|... ..++.++ |||+|||.++++ ..
T Consensus 128 ~~~~~~~di~G--------------~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 128 RPNVKWSDVAG--------------LEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp CCCCCGGGSCS--------------CHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred CCCCCHHHhcC--------------HHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35556666666 7788889999999999888888753 3445554 999999999887 33
Q ss_pred CCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCc
Q psy15936 322 EGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKH 401 (665)
Q Consensus 322 ~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~ 401 (665)
+..|+....+++...+.+...+.+ +.+|..+....++++|+|++|.+...+..... ....++...+. ..
T Consensus 193 ~~~~~~v~~~~l~~~~~g~~~~~~-----~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~lL---~~ 261 (444)
T 2zan_A 193 NSTFFSISSSDLVSKWLGESEKLV-----KNLFQLARENKPSIIFIDEIDSLCGSRSENES---EAARRIKTEFL---VQ 261 (444)
T ss_dssp SSEEEEECCC---------CCCTH-----HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCC---GGGHHHHHHHH---TT
T ss_pred CCCEEEEeHHHHHhhhcchHHHHH-----HHHHHHHHHcCCeEEEEechHhhccCCCCccc---cHHHHHHHHHH---HH
Confidence 567888888888888888766655 78888888888999999999998766543221 12222222221 11
Q ss_pred hhHHHhhCCC-CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcC
Q psy15936 402 PELFDALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDE 480 (665)
Q Consensus 402 ~d~f~~~g~~-~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDE 480 (665)
.+ |+. .+.++++.| +++..+.++.++.+ +.+....++.++...+..++.......+. -+++
T Consensus 262 l~-----~~~~~~~~v~vI~---------atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~ 323 (444)
T 2zan_A 262 MQ-----GVGVDNDGILVLG---------ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTE 323 (444)
T ss_dssp TT-----CSSCCCSSCEEEE---------EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCH
T ss_pred Hh-----CcccCCCCEEEEe---------cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCH
Confidence 11 221 245566666 23333445554443 33333445566677778888776554432 1233
Q ss_pred ccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 481 IDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 481 ID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
.+ +..+....+|+++++ +..+|.+|.+.++|+..
T Consensus 324 ~~--------------------l~~la~~t~G~sgad-l~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 324 AD--------------------FQELGRKTDGYSGAD-ISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp HH--------------------HHHHHHHTTTCCHHH-HHHHHHHHHTHHHHHHH
T ss_pred HH--------------------HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 22 677888899999887 99999999999998754
No 112
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.69 E-value=1.9e-10 Score=128.10 Aligned_cols=315 Identities=13% Similarity=0.141 Sum_probs=205.3
Q ss_pred HHHHhcCceeEEEEEEeCCC--eEEEEEeCC---CeEEEEcCCCcccCC-CCCCceeecccc----ceEEEeecC--CCc
Q psy15936 171 QLLQEQGSYVGEVVKPMDKK--KVLVKVHPE---GKFVVDIDKNIDIND-VTPNCRVALRNE----SYTLHKILP--NKM 238 (665)
Q Consensus 171 ~~l~~~pl~vg~v~eil~~~--~~iVk~~~~---~~~vv~v~~~v~~~~-l~pG~~Val~~~----~~~i~~iLp--~~~ 238 (665)
+.|..+++..|+++++.+.+ .+++..+++ ++.+|++++.++.+. +..||+|.|.+- -..-+-+.| ..+
T Consensus 44 ~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av 123 (489)
T 3hu3_A 44 PKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123 (489)
T ss_dssp HHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGS
T ss_pred HHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCccc
Confidence 45666789999999999987 477777665 356899999998887 999999988432 122233333 111
Q ss_pred c------------chhh---hhccc-------------------CCc-hh----------------HHHHHHHHHHHHHH
Q psy15936 239 D------------VDEA---IKSSE-------------------GFK-PY----------------YVTKIEELQLIVAE 267 (665)
Q Consensus 239 d------------p~v~---~m~~e-------------------~~~-~~----------------~~~~i~~Le~~~~~ 267 (665)
. |... ....+ ..+ .. ...... +.....
T Consensus 124 ~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~ 201 (489)
T 3hu3_A 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEE--ESLNEV 201 (489)
T ss_dssp SSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEECTTCEEECCSSCBCHHHHH--HHHTCC
T ss_pred ccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEEcCCeEEEEccCcccccccc--cccCCC
Confidence 1 1000 00000 000 00 000000 001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCC
Q psy15936 268 KEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTP 340 (665)
Q Consensus 268 ~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~ 340 (665)
.+.++.|++.+++.+++.+..+..+++.|...|...+.++ |||+|||+++++ ..+..|+....+.+...+.+.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~ 281 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcch
Confidence 3567888999999999999999999999999998888876 999999999887 446678887778888777766
Q ss_pred CceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeC
Q psy15936 341 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420 (665)
Q Consensus 341 ~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~G 420 (665)
..... +.+|..+....++++|+|++|.+...+....+ +...++...+.. .++ +......+++.|
T Consensus 282 ~~~~~-----~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~---~~~~~~~~~LL~------~ld--~~~~~~~v~vIa 345 (489)
T 3hu3_A 282 SESNL-----RKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLT------LMD--GLKQRAHVIVMA 345 (489)
T ss_dssp HHHHH-----HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC---HHHHHHHHHHHH------HHH--HSCTTSCEEEEE
T ss_pred hHHHH-----HHHHHHHHhcCCcEEEecchhhhccccccccc---hHHHHHHHHHHH------Hhh--ccccCCceEEEE
Confidence 55443 67777777788899999999999876533221 222222222211 112 223444566666
Q ss_pred CCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHH
Q psy15936 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 500 (665)
Q Consensus 421 ppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~ 500 (665)
+++..+.++.++.+.++++....+..++...+..++.......+ +.++++
T Consensus 346 ---------aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---l~~~~~------------------ 395 (489)
T 3hu3_A 346 ---------ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---LADDVD------------------ 395 (489)
T ss_dssp ---------EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---BCTTCC------------------
T ss_pred ---------ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---Ccchhh------------------
Confidence 44445667777766666665566677777888888877543322 223332
Q ss_pred HHHHHHHHhhcCCcccCccccccccchhhhhhhhhc
Q psy15936 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV 536 (665)
Q Consensus 501 ~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~ 536 (665)
+..+...+.++++.+ +..+|.+|++.++++...
T Consensus 396 --l~~la~~t~g~s~~d-L~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 396 --LEQVANETHGHVGAD-LAALCSEAALQAIRKKMD 428 (489)
T ss_dssp --HHHHHHTCTTCCHHH-HHHHHHHHHHHHHHTTTT
T ss_pred --HHHHHHHccCCcHHH-HHHHHHHHHHHHHHhccc
Confidence 667788888988876 899999999999987654
No 113
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.69 E-value=1.7e-07 Score=102.21 Aligned_cols=196 Identities=17% Similarity=0.100 Sum_probs=112.8
Q ss_pred eEEEeCCCCChHHHHHHHH-HHhhCCceEEEech----hhhhhhhccc-hHHHHHHHHHHHhcCCeEEEEcCccccccCC
Q psy15936 415 GVLLYGPPGTGKTLLARAV-AHHTECTFIRVSGS----ELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSSR 488 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~ai-a~~l~~~lirv~~~----dl~~~~~g~~-~~~~~~if~~a~~~~p~VlliDEID~l~~~~ 488 (665)
++||.|+||| ||.+|+++ +..+....+..+.. ++...+.++. .......+.. ....++|+|||+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~L---AdgGvl~lDEIn~~---- 312 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVL---ADGGILAVDHLEGA---- 312 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEECHHHH---TTTSEEEEECCTTC----
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCCCeeEE---cCCCeeehHhhhhC----
Confidence 7999999999 99999999 77665544332211 1110000000 0000011112 12369999999974
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC----------
Q psy15936 489 IESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---------- 558 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---------- 558 (665)
.+..+..+.+.+++-. +. + +|. -.++-..||||+|+.+
T Consensus 313 -------~~~~qsaLlEaMEe~~-------Vt-I---~G~--------------~lparf~VIAA~NP~~~yd~~~s~~~ 360 (506)
T 3f8t_A 313 -------PEPHRWALMEAMDKGT-------VT-V---DGI--------------ALNARCAVLAAINPGEQWPSDPPIAR 360 (506)
T ss_dssp -------CHHHHHHHHHHHHHSE-------EE-E---TTE--------------EEECCCEEEEEECCCC--CCSCGGGG
T ss_pred -------CHHHHHHHHHHHhCCc-------EE-E---CCE--------------EcCCCeEEEEEeCcccccCCCCCccc
Confidence 3455666666665421 10 0 011 0112226999999875
Q ss_pred -CCCccccCCCCeeEEEE-eCCCCHHH-------------HHHHHHHhhc--c--CCCCCCCCHHHHHH-----------
Q psy15936 559 -ILDPALLRPGRIDRKIE-FPPPNEEA-------------RLDILRIHSR--K--MNLTRGINLRKIAE----------- 608 (665)
Q Consensus 559 -~Ld~aLlr~gRfd~~I~-~~~P~~ee-------------r~~Il~~~l~--~--~~~~~~vdl~~la~----------- 608 (665)
.|++++++ |||..+. +..|+.+. ..+++. +++ . ..+++++ .+.+..
T Consensus 361 ~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea-~~yI~~~y~~tR~~~~~ 436 (506)
T 3f8t_A 361 IDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEA-RKRLEHWYETRREEVEE 436 (506)
T ss_dssp CCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHH-HHHHHHHHHHHHHHHHH
T ss_pred cCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHH-HHHHHHHHHHHhcCccc
Confidence 78889999 9997544 34555432 222221 222 1 1122111 111110
Q ss_pred ------HCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc
Q psy15936 609 ------LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654 (665)
Q Consensus 609 ------~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al~~~~~~~~ 654 (665)
..-|.|+|.+..+++.|...|..+.+..++.+|+..|++-+..+..
T Consensus 437 ~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 437 RLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 2457899999999999999999999999999999999988776543
No 114
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.59 E-value=2.6e-06 Score=89.49 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=110.6
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh------
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV------ 450 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~------ 450 (665)
....+.|-+++.+.+.+ +. . ..++++||+|+|||+|++.+++.++...+.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---------------A-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---------------S-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hc---------------C-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34467888888888866 42 1 4899999999999999999999887767777654320
Q ss_pred --h---hh--------------------------hc---c------chHHHHHHHHHHHhc--CCeEEEEcCccccccCC
Q psy15936 451 --Q---KF--------------------------IG---E------GSRMVRELFVMAREH--APSIIFMDEIDSIGSSR 488 (665)
Q Consensus 451 --~---~~--------------------------~g---~------~~~~~~~if~~a~~~--~p~VlliDEID~l~~~~ 488 (665)
. .+ ++ . ....+..++...... .|.++++||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0 00 00 0 011233444443332 37899999999764310
Q ss_pred cCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---------C
Q psy15936 489 IESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---------I 559 (665)
Q Consensus 489 ~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---------~ 559 (665)
+.+....+..+.+... ++ .+|+++.... .
T Consensus 154 -------~~~~~~~l~~~~~~~~------~~-----------------------------~~i~~g~~~~~l~~~l~~~~ 191 (357)
T 2fna_A 154 -------GVNLLPALAYAYDNLK------RI-----------------------------KFIMSGSEMGLLYDYLRVED 191 (357)
T ss_dssp -------TCCCHHHHHHHHHHCT------TE-----------------------------EEEEEESSHHHHHHHTTTTC
T ss_pred -------chhHHHHHHHHHHcCC------Ce-----------------------------EEEEEcCchHHHHHHHhccC
Confidence 0111222323322210 01 3555654321 1
Q ss_pred CCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Q psy15936 560 LDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624 (665)
Q Consensus 560 Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~l~~~ 624 (665)
....+. ||+...+.+++++.++..+++...+...+...+ +...+...+.|+ +.-+..++..
T Consensus 192 ~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 192 PESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp TTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred CCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCC-HHHHHHHHHH
Confidence 112232 366678999999999999999987764443333 247788888884 5666666554
No 115
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.57 E-value=1.2e-09 Score=110.76 Aligned_cols=225 Identities=16% Similarity=0.209 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEecc---CCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKVHP---EGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka~~---~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
++..+.++++.+.. ...+..+...+..+++++ |||+|||.++++-. ...++...+..+...+.+.+.+.+
T Consensus 21 ~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i-- 97 (254)
T 1ixz_A 21 AEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV-- 97 (254)
T ss_dssp CHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHH--
T ss_pred cHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHH--
Confidence 44555566554444 345677888888887766 99999999987732 344555555555544444332222
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCC-ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG-LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 426 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G-~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGK 426 (665)
..+|+.+....++++++|+++.++..+....++ .++..+.+.+++. .+ .|......+++.+
T Consensus 98 ---~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~-------~l--~g~~~~~~~i~~a------ 159 (254)
T 1ixz_A 98 ---RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------EM--DGFEKDTAIVVMA------ 159 (254)
T ss_dssp ---HHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH-------HH--HTCCTTCCEEEEE------
T ss_pred ---HHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH-------HH--hCCCCCCCEEEEE------
Confidence 456666666678999999999887655432222 2222232323221 11 2444555566555
Q ss_pred HHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 427 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 427 T~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
+.+-++.++.++.+.++.+....+..++...+..+++......+ +.++++ +..+
T Consensus 160 ---~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~---~~~~~~--------------------~~~l 213 (254)
T 1ixz_A 160 ---ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP---LAEDVD--------------------LALL 213 (254)
T ss_dssp ---EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC---BCTTCC--------------------HHHH
T ss_pred ---ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC---CCcccC--------------------HHHH
Confidence 33444567888887777777667777777777888876443321 223333 5567
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccc
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~ 547 (665)
.....|+++++ +.++|.+|++.+.++++..++.+|+..+.
T Consensus 214 a~~~~G~~~~d-l~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 214 AKRTPGFVGAD-LENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHTCTTCCHHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHcCCCCHHH-HHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 77888887766 88999999999999888888888887653
No 116
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.49 E-value=8.2e-06 Score=85.51 Aligned_cols=188 Identities=22% Similarity=0.269 Sum_probs=109.6
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh------
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV------ 450 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~------ 450 (665)
....+.|-+++.+.+.+.+.. | ..++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 344678899999988776632 2 5899999999999999999999876 5566554321
Q ss_pred ------hhh---h-----------------cc----chHHHHHHHH----HHHhcCCeEEEEcCccccccCCcCCCCCCC
Q psy15936 451 ------QKF---I-----------------GE----GSRMVRELFV----MAREHAPSIIFMDEIDSIGSSRIESGSGGD 496 (665)
Q Consensus 451 ------~~~---~-----------------g~----~~~~~~~if~----~a~~~~p~VlliDEID~l~~~~~~~~~~~~ 496 (665)
..+ . +. .......++. .+....|.++++||++.+.... ...+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccch
Confidence 000 0 00 0011222222 2222348899999999764310 0112
Q ss_pred hHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCC---------CCCccccCC
Q psy15936 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID---------ILDPALLRP 567 (665)
Q Consensus 497 ~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~---------~Ld~aLlr~ 567 (665)
......+..+++... ++ .+|+++.... .....+.
T Consensus 149 ~~~~~~L~~~~~~~~------~~-----------------------------~~il~g~~~~~l~~~l~~~~~~~~l~-- 191 (350)
T 2qen_A 149 KELLALFAYAYDSLP------NL-----------------------------KIILTGSEVGLLHDFLKITDYESPLY-- 191 (350)
T ss_dssp HHHHHHHHHHHHHCT------TE-----------------------------EEEEEESSHHHHHHHHCTTCTTSTTT--
T ss_pred hhHHHHHHHHHHhcC------Ce-----------------------------EEEEECCcHHHHHHHHhhcCCCCccc--
Confidence 233333434333221 11 3555553321 1122232
Q ss_pred CCeeEEEEeCCCCHHHHHHHHHHhhccCCCC-CCCCHHHHHHHCCCCCHHHHHHHHH
Q psy15936 568 GRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCT 623 (665)
Q Consensus 568 gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~-~~vdl~~la~~t~g~s~~dl~~l~~ 623 (665)
||+...+.+++.+.++..+++...+...+.. .+.....+...+.| .+.-+..++.
T Consensus 192 ~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3666789999999999999998877654433 12235667777877 4566666554
No 117
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.48 E-value=6.8e-07 Score=96.62 Aligned_cols=213 Identities=22% Similarity=0.312 Sum_probs=122.7
Q ss_pred cccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhhhhh---
Q psy15936 379 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSELVQK--- 452 (665)
Q Consensus 379 ~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl~~~--- 452 (665)
+.+.|.+...+.+.+.+.. .. .....|+++|++||||+++|+++..... .+|+.++|..+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~----------~a-~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKK----------IS-CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHH----------HT-TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHH----------hc-CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 3456666666666665543 11 3456789999999999999999987654 78999999875332
Q ss_pred --hhccch-------HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCcccc
Q psy15936 453 --FIGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKG 521 (665)
Q Consensus 453 --~~g~~~-------~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~ 521 (665)
..|... ......|..+ ..+.+|+|||+.+ +...|..+..+++.-. ...+...+.
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~- 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIE- 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEE-
T ss_pred HHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee-
Confidence 111100 0012233432 3469999999975 3466777777776522 111111111
Q ss_pred ccccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCee-EEEEeCCCCH--HHHHHHHHHh
Q psy15936 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRID-RKIEFPPPNE--EARLDILRIH 591 (665)
Q Consensus 522 vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd-~~I~~~~P~~--eer~~Il~~~ 591 (665)
.-.++|+|||.. ..+.+.|.. |+. ..|.+|+... ++...++.++
T Consensus 271 ------------------------~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~ 324 (387)
T 1ny5_A 271 ------------------------VNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHF 324 (387)
T ss_dssp ------------------------CCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHH
T ss_pred ------------------------ccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHH
Confidence 112699999863 223333332 332 2455555543 5555666666
Q ss_pred hcc----CCCC-CCCC---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy15936 592 SRK----MNLT-RGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV 646 (665)
Q Consensus 592 l~~----~~~~-~~vd---l~~la~~t~g~s~~dl~~l~~~A~~~A~~~~~~~It~~d~~~Al 646 (665)
+.. .+.. ..++ +..+..+.-..+.+++++++++|+..+ ....|+.+|+...+
T Consensus 325 l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 325 LKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 543 2222 1233 333333332235689999999987654 34579999986543
No 118
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=98.47 E-value=4.2e-07 Score=80.10 Aligned_cols=97 Identities=31% Similarity=0.461 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhh
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLH 354 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 354 (665)
|+.+..++++.+..++...+.++.+|..+|.++...++.+.+++++++.+|++.+++.++...+.+|.+|.++..++.+.
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv 91 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIV 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeE
Confidence 66777788888888888899999999999999999988899999998999999999999999999999999999999999
Q ss_pred hhcCCCCCcchhhhhhc
Q psy15936 355 KILPNKVDPLVSLMMVE 371 (665)
Q Consensus 355 ~~~~~~~~~~i~~~eid 371 (665)
.++|...+|.++.++++
T Consensus 92 ~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 92 NVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp EEEC-------------
T ss_pred EeCCCCcCccchheEec
Confidence 99999999999988765
No 119
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.40 E-value=2.8e-09 Score=108.07 Aligned_cols=235 Identities=16% Similarity=0.166 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCce
Q psy15936 271 NLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCR 343 (665)
Q Consensus 271 ~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~ 343 (665)
++.|++..++.+++.+.. ..+++.|...|...+.++ |||+|||.++++ ..+..|+....+.+...+.+.+..
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHH
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHH
Confidence 344567777777777665 455677777777777765 999999999877 334567777777776666554433
Q ss_pred EEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCC--ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCC
Q psy15936 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421 (665)
Q Consensus 344 ~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G--~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~Gp 421 (665)
.. ..+|..+....++++++|++|.+...+.....+ .......+..++.. ++ +...+.++++.|
T Consensus 86 ~~-----~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~-------~~--~~~~~~~~~vi~- 150 (262)
T 2qz4_A 86 RV-----RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE-------MD--GMGTTDHVIVLA- 150 (262)
T ss_dssp HH-----HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHH-------HH--TCCTTCCEEEEE-
T ss_pred HH-----HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHH-------hh--CcCCCCCEEEEe-
Confidence 32 556666666678999999999987665432211 11122223233321 22 233444566655
Q ss_pred CCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 422 pGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
+++....++.++.+.++.+....+..++...+..++.......+. + . ....
T Consensus 151 --------~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~-~----------------~~~~ 201 (262)
T 2qz4_A 151 --------STNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL----T-Q----------------SSTF 201 (262)
T ss_dssp --------EESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC----C-B----------------THHH
T ss_pred --------cCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC----C-c----------------chhh
Confidence 223334556666555555444445556666677777764433220 0 0 0011
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
.+..+.....++++.+ +..+|.+|.+.+.++++..++.+|+..+...++
T Consensus 202 ~~~~l~~~~~g~~~~~-l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 250 (262)
T 2qz4_A 202 YSQRLAELTPGFSGAD-IANICNEAALHAAREGHTSVHTLNFEYAVERVL 250 (262)
T ss_dssp HHHHHHHTCTTCCHHH-HHHHHHHHHTC--------CCBCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 2345666777887764 889999999999988888888888877665443
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=1.3e-06 Score=84.98 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=47.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccc-hHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~-~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
+.+++|+||||||||++|++++..+ +..++.+++.++...+.... ......++.... .+.+++|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3789999999999999999999977 56788888877654432110 000122233222 2469999999753
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.30 E-value=5.6e-07 Score=84.00 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
++..++|+||+|+|||+|+++++..+ +...++++..++... +....+.++++||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc
Confidence 56789999999999999999999977 555777777665432 11235789999999864
No 122
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.29 E-value=5.9e-09 Score=111.59 Aligned_cols=215 Identities=11% Similarity=0.138 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCc
Q psy15936 270 QNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNC 342 (665)
Q Consensus 270 ~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~ 342 (665)
+++.|++..++.+++.+..+..+++.|...+ ..+.++ |||+|||.++++ ..+..|+....+++...+.+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~ 162 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE 162 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHH
Confidence 3455578888999999998888888776654 334443 999999999877 44567888778888888877655
Q ss_pred eEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHH-HHhhcCCCchhHHHhhCCCCCceEEEeCC
Q psy15936 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIK-EVIELPVKHPELFDALGIAQPKGVLLYGP 421 (665)
Q Consensus 343 ~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~-~~l~l~l~~~d~f~~~g~~~~~~vLL~Gp 421 (665)
..+ +.++..+....++++++|++|.+...+.. +......++. +++.. ++......+..+++.|-
T Consensus 163 ~~~-----~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~-------l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 163 KMV-----RALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQ-------LDGATTSSEDRILVVGA 227 (357)
T ss_dssp HHH-----HHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHH-------HHC----CCCCEEEEEE
T ss_pred HHH-----HHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHH-------HhcccccCCCCEEEEEe
Confidence 544 66777777778899999999998765422 1111222222 22211 12111123345555552
Q ss_pred CCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHH
Q psy15936 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 501 (665)
Q Consensus 422 pGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~ 501 (665)
+ +....++.++.+ +.+....+..++...+..++.......+ + -+++ .
T Consensus 228 t---------n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~-~l~~--------------------~ 274 (357)
T 3d8b_A 228 T---------NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQ-C-CLSE--------------------E 274 (357)
T ss_dssp E---------SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC-B-CCCH--------------------H
T ss_pred c---------CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC-C-CccH--------------------H
Confidence 2 112223322222 1111222344555556666665443322 0 0111 2
Q ss_pred HHHHHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 502 ~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
.+..+....+|+++.+ +..+|.+|.+.++|+-
T Consensus 275 ~l~~la~~t~G~s~~d-l~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 275 EIEQIVQQSDAFSGAD-MTQLCREASLGPIRSL 306 (357)
T ss_dssp HHHHHHHHTTTCCHHH-HHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHh
Confidence 3667788888988876 8999999999888854
No 123
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.27 E-value=9.7e-06 Score=105.28 Aligned_cols=178 Identities=16% Similarity=0.246 Sum_probs=109.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIES 491 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~ 491 (665)
...++++.||+|||||++++++|+.+|..+++++|++-.. ...+..+|..+... ++.+++||++++
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~------- 709 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL------- 709 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-------
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc-------
Confidence 3467899999999999999999999999999999987432 34446666655443 479999999974
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhccc--chhhhh-ccccEEEEEeCC----CCCCCccc
Q psy15936 492 GSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHV--TQEDFE-MAVAKVIMATNR----IDILDPAL 564 (665)
Q Consensus 492 ~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v--~~~df~-~a~~~VIatTn~----~~~Ld~aL 564 (665)
++++...+.+.+..+.. ++.++...+ ..+.+. .....|++|.|+ ...|++++
T Consensus 710 ----~~evLs~l~~~l~~i~~-----------------al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~L 768 (2695)
T 4akg_A 710 ----DEKVLSAVSANIQQIQN-----------------GLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENL 768 (2695)
T ss_dssp ----CHHHHHHHHHHHHHHHH-----------------HHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHH
T ss_pred ----ChHHHHHHHHHHHHHHH-----------------HHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHH
Confidence 44565555544433211 011111000 000011 011146777774 34689999
Q ss_pred cCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCCC-----CH-HHHHHHCC-----CCCHHHHHHHHHHHHHH
Q psy15936 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGI-----NL-RKIAELMP-----GASGAEVKGVCTEAGMY 628 (665)
Q Consensus 565 lr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~v-----dl-~~la~~t~-----g~s~~dl~~l~~~A~~~ 628 (665)
++ || +.+.+..|+.+...+|+-... +...+... .+ ..+..... .|.-+.++.+++.|...
T Consensus 769 k~--~F-r~v~m~~Pd~~~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 769 KK--SF-REFSMKSPQSGTIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HT--TE-EEEECCCCCHHHHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred Hh--he-EEEEeeCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 88 88 689999999988888754322 22111110 01 11111222 26778999888877644
No 124
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.27 E-value=3.5e-07 Score=95.55 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=48.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcccccc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~ 486 (665)
|+.++..++|+||||||||+||.+++...+.. |+.....+....+.......+..++....... +++||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 55667778999999999999999999875543 44441122211122223344444555554443 999999998865
Q ss_pred CC
Q psy15936 487 SR 488 (665)
Q Consensus 487 ~~ 488 (665)
..
T Consensus 197 ~~ 198 (331)
T 2vhj_A 197 AA 198 (331)
T ss_dssp --
T ss_pred cc
Confidence 43
No 125
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.26 E-value=3.5e-06 Score=90.43 Aligned_cols=197 Identities=22% Similarity=0.337 Sum_probs=112.5
Q ss_pred ccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCc--eEEEechhhhhh-----
Q psy15936 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----- 452 (665)
Q Consensus 380 ~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~--lirv~~~dl~~~----- 452 (665)
.+.|.+....++...+.. .. .....++++|++||||+++|+++....+.. |+.++|..+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~-------~a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPK-------IA----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHH-------HH----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhh-------hh----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 456777776766665543 11 234569999999999999999998876533 999999865321
Q ss_pred hhccch-------HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc--CCcccCcccccc
Q psy15936 453 FIGEGS-------RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD--GFEATKNIKGVC 523 (665)
Q Consensus 453 ~~g~~~-------~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d--~~~~~~~i~~vc 523 (665)
..|... ......|..+ ....+|+|||+.+ +...|..+..+++.-. ...+...+.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~--- 261 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIE--- 261 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEE---
T ss_pred hcCccccccCCcccccCChHhhc---CCCeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCccee---
Confidence 111100 0011233432 3468999999976 3466777777776432 111111111
Q ss_pred ccchhhhhhhhhcccchhhhhccccEEEEEeCCC-------CCCCccccCCCCeeE-EEEeCCCCH--HHHHHHHHHhhc
Q psy15936 524 TEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI-------DILDPALLRPGRIDR-KIEFPPPNE--EARLDILRIHSR 593 (665)
Q Consensus 524 ~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~-------~~Ld~aLlr~gRfd~-~I~~~~P~~--eer~~Il~~~l~ 593 (665)
.-.++|+|||.. ..+.+.|.. |+.. .|.+|++.. ++...++.+++.
T Consensus 262 ----------------------~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 262 ----------------------VDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp ----------------------CCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred ----------------------eeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 112689999853 123333433 3332 577777665 666677776664
Q ss_pred cC----CCC-CCCCHHH---HHHHC-CCCCHHHHHHHHHHHHHHH
Q psy15936 594 KM----NLT-RGINLRK---IAELM-PGASGAEVKGVCTEAGMYA 629 (665)
Q Consensus 594 ~~----~~~-~~vdl~~---la~~t-~g~s~~dl~~l~~~A~~~A 629 (665)
.. +.. ..++-+. |..+. .| +.++++++++.|+..+
T Consensus 318 ~~~~~~~~~~~~~~~~a~~~L~~~~wpG-NvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 318 KFAKEYKKNCFELSEETKEYLMKQEWKG-NVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHTTCCCCCBCHHHHHHHHTCCCTT-HHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCcCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhC
Confidence 32 211 2233333 33333 33 5688888888886543
No 126
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.20 E-value=6e-10 Score=113.86 Aligned_cols=230 Identities=13% Similarity=0.140 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
.+..++.+++.+.. ..+++.|...+...+.++ |||+|||.++++ ..+..|+....+.+...+.+.+...+
T Consensus 16 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~-- 92 (268)
T 2r62_A 16 NEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRV-- 92 (268)
T ss_dssp CTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSS--
T ss_pred cHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHH--
Confidence 45556666666654 556788888887777765 999999999877 33456666666777777766655433
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccc-c-CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCCh
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEM-V-GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 425 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~-i-~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtG 425 (665)
+.+|..+....++++++|++|.+...+... . .+.....+.+..+ +...+. .+ .....+++.|-
T Consensus 93 ---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~l----l~~l~~---~~-~~~~~v~vi~t---- 157 (268)
T 2r62_A 93 ---RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQL----LAEMDG---FG-SENAPVIVLAA---- 157 (268)
T ss_dssp ---STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTT----TTTTTC---SS-CSCSCCEEEEC----
T ss_pred ---HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHH----HHHhhC---cc-cCCCCEEEEEe----
Confidence 556666666678999999999987654211 0 0000000001111 111111 11 12233555552
Q ss_pred HHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHH
Q psy15936 426 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 505 (665)
Q Consensus 426 KT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~ 505 (665)
++....++.++.+.++.+....+..++...+..++.......+ +.++++ +..
T Consensus 158 -----tn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---~~~~~~--------------------~~~ 209 (268)
T 2r62_A 158 -----TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---LANDVN--------------------LQE 209 (268)
T ss_dssp -----BSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---CCSSCC--------------------TTT
T ss_pred -----cCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---CCCccC--------------------HHH
Confidence 2233445666666555555555566666666777765433221 112222 112
Q ss_pred HHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEE
Q psy15936 506 LLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551 (665)
Q Consensus 506 Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VI 551 (665)
+.....|+++.+ +.++|..|.+.+.+.+...++.+++..+...++
T Consensus 210 la~~~~g~~g~d-l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 210 VAKLTAGLAGAD-LANIINEAALLAGRNNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp TTSSSCSSCHHH-HHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCC
T ss_pred HHHHcCCCCHHH-HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHh
Confidence 333345555543 778888888888877777788888877655433
No 127
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.19 E-value=1.1e-08 Score=105.35 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEecc---CCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKVHP---EGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka~~---~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
.+..+.++++.+.. ...+..+...+..+++++ |||+|||.++++-. ...++...+..+...+.+...+.+
T Consensus 45 ~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i-- 121 (278)
T 1iy2_A 45 AEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV-- 121 (278)
T ss_dssp CHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHH--
T ss_pred hHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHH--
Confidence 44455555554443 344667788888777765 99999999987732 234555555555444443332222
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccCC-ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChH
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG-LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 426 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G-~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGK 426 (665)
..+|+.+....++++++|+++.++..+....++ .++..+.+.+++. ...|......+++.+
T Consensus 122 ---~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~---------~lsgg~~~~~~i~~a------ 183 (278)
T 1iy2_A 122 ---RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV---------EMDGFEKDTAIVVMA------ 183 (278)
T ss_dssp ---HHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH---------HHTTCCTTCCEEEEE------
T ss_pred ---HHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH---------HHhCCCCCCCEEEEE------
Confidence 455665555668899999999876554332222 2222333333221 112344444455544
Q ss_pred HHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 427 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 427 T~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
+.+-++.++.++.+.++.+....+..++...+..++....... -+.++++ +..+
T Consensus 184 ---~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---~~~~~~~--------------------~~~l 237 (278)
T 1iy2_A 184 ---ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---PLAEDVD--------------------LALL 237 (278)
T ss_dssp ---EESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---CBCTTCC--------------------HHHH
T ss_pred ---ecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---CCCcccC--------------------HHHH
Confidence 2222334566666555555555566667777777777644321 1223333 4556
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccc
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~ 547 (665)
.....|+.+++ +.++|.+|.+.+.++++..++.+|+..+.
T Consensus 238 a~~~~G~~~~d-l~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 238 AKRTPGFVGAD-LENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHTCTTCCHHH-HHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHcCCCCHHH-HHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 77788887665 88999999999998887788888887653
No 128
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.18 E-value=3.1e-06 Score=88.52 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=46.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC----CceEEEechhhhhhhhccc-hHHHHHHHHHHHhcCCeEEEEcCcccc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE----CTFIRVSGSELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDSI 484 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~----~~lirv~~~dl~~~~~g~~-~~~~~~if~~a~~~~p~VlliDEID~l 484 (665)
.+.+++|+||||||||+||.+++..+. ..++.+.++++...+.... .......+... ..+.+++|||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 367999999999999999999998654 6777888877655443211 11111112222 23569999999753
No 129
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.17 E-value=1.7e-08 Score=104.50 Aligned_cols=211 Identities=10% Similarity=0.100 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEec
Q psy15936 275 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALR 347 (665)
Q Consensus 275 l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~ 347 (665)
.+..++.+.+.+..+..+++.+...+ .++.++ |||+|||.++++ ..+..|+....+.+...+.+.+....
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~-- 102 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV-- 102 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHH--
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHH--
Confidence 67788888999988888888877654 334443 999999999887 44567777777777777776654433
Q ss_pred ccchhhhhhcCCCCCcchhhhhhccCCCCCccccC-CChHHHHHHHHHhhcCCCchhHHHhhCCC-CCceEEEeCCCCCh
Q psy15936 348 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVG-GLDNQIKEIKEVIELPVKHPELFDALGIA-QPKGVLLYGPPGTG 425 (665)
Q Consensus 348 ~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~-G~~~~~~~l~~~l~l~l~~~d~f~~~g~~-~~~~vLL~GppGtG 425 (665)
+.++..+....++++++|+++.+...+..... ........+...+. ..... .+..+++.|-+..
T Consensus 103 ---~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~----------~~~~~~~~~~v~vi~~tn~- 168 (297)
T 3b9p_A 103 ---RALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD----------GLPGNPDGDRIVVLAATNR- 168 (297)
T ss_dssp ---HHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH----------HCC------CEEEEEEESC-
T ss_pred ---HHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh----------cccccCCCCcEEEEeecCC-
Confidence 66777777778899999999998766532211 12233333322221 11111 1233555442221
Q ss_pred HHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHH
Q psy15936 426 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 505 (665)
Q Consensus 426 KT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~ 505 (665)
.+.++.++.+ +.+....+..++...+..++.......+. .++ ...+..
T Consensus 169 --------~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~-----~~~-----------------~~~~~~ 216 (297)
T 3b9p_A 169 --------PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS-----PLD-----------------TEALRR 216 (297)
T ss_dssp --------GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC-----CSC-----------------HHHHHH
T ss_pred --------hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC-----CCC-----------------HHHHHH
Confidence 1122222111 11111122334455556666554332210 011 123566
Q ss_pred HHHhhcCCcccCccccccccchhhhhhhhh
Q psy15936 506 LLNQLDGFEATKNIKGVCTEAGMYALRERR 535 (665)
Q Consensus 506 Ll~~~d~~~~~~~i~~vc~eAg~~air~~r 535 (665)
+.....|+++.+ +..+|.+|++.++|+..
T Consensus 217 la~~~~g~~~~~-l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 217 LAKITDGYSGSD-LTALAKDAALEPIRELN 245 (297)
T ss_dssp HHHHTTTCCHHH-HHHHHHHHTTHHHHTCC
T ss_pred HHHHcCCCCHHH-HHHHHHHHHHHHHHHHh
Confidence 777778888766 88999999999998753
No 130
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.15 E-value=2.1e-06 Score=84.08 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=74.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHh--------hC-CceEEEechhhhhhhh----------cc-----chHHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH--------TE-CTFIRVSGSELVQKFI----------GE-----GSRMVRELFVMARE 470 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~--------l~-~~lirv~~~dl~~~~~----------g~-----~~~~~~~if~~a~~ 470 (665)
..+++|+||+|||++|.+.+.. .+ .+++..+..++..... .. ....+...+.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 5789999999999999887543 23 5565555555533221 00 11122222111 22
Q ss_pred cCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEE
Q psy15936 471 HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550 (665)
Q Consensus 471 ~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~V 550 (665)
...++++|||++.+.+.+.+... . . .++..+...... ...+
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e--~---~----rll~~l~~~r~~------------------------------~~~i 126 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK--I---P----ENVQWLNTHRHQ------------------------------GIDI 126 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC--C---C----HHHHGGGGTTTT------------------------------TCEE
T ss_pred cCceEEEEEChhhhccCccccch--h---H----HHHHHHHhcCcC------------------------------CeEE
Confidence 44689999999998654422111 0 1 122222211000 1148
Q ss_pred EEEeCCCCCCCccccCCCCeeEEEEeCCCCHH
Q psy15936 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEE 582 (665)
Q Consensus 551 IatTn~~~~Ld~aLlr~gRfd~~I~~~~P~~e 582 (665)
|.+|+++..++.++++ |++..++++.|...
T Consensus 127 il~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 127 FVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp EEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred EEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 8889889999999988 99999999876543
No 131
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.14 E-value=3.1e-08 Score=107.13 Aligned_cols=212 Identities=13% Similarity=0.102 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEE
Q psy15936 273 RRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVA 345 (665)
Q Consensus 273 ~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~ 345 (665)
.|.+..++.+.+.+..+..+++.|...+.. +.++ |||+|||.++++ ..+..|+....+.+...+.+.....+
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~ 196 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 196 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCC-CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCC-CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHH
Confidence 336778888889898888888877766533 3333 999999999887 45678888888888888877765544
Q ss_pred ecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCC-ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCC
Q psy15936 346 LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG-LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 424 (665)
Q Consensus 346 l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G-~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGt 424 (665)
..+|..+....++++|+|++|.+...+...... .......+... ++......+..+++.|-+
T Consensus 197 -----~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~----------l~~~~~~~~~~v~vI~at-- 259 (389)
T 3vfd_A 197 -----RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIE----------FDGVQSAGDDRVLVMGAT-- 259 (389)
T ss_dssp -----HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHH----------HHHHC-----CEEEEEEE--
T ss_pred -----HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHH----------hhcccccCCCCEEEEEec--
Confidence 677877777788999999999986554221111 12222222111 222222334456665522
Q ss_pred hHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHH
Q psy15936 425 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504 (665)
Q Consensus 425 GKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~ 504 (665)
+..+.++.++.+ +.+....+..++...+..++........ . .+. ...+.
T Consensus 260 -------n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~-~----~l~-----------------~~~~~ 308 (389)
T 3vfd_A 260 -------NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG-S----PLT-----------------QKELA 308 (389)
T ss_dssp -------SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-C----CSC-----------------HHHHH
T ss_pred -------CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC-C----CCC-----------------HHHHH
Confidence 222233333222 2221222344555666677665433211 0 010 12356
Q ss_pred HHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 505 ELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 505 ~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
.+....+++++.+ +..+|..|.+.++++-
T Consensus 309 ~la~~~~g~~~~~-l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 309 QLARMTDGYSGSD-LTALAKDAALGPIREL 337 (389)
T ss_dssp HHHHHTTTCCHHH-HHHHHHHHTTHHHHTS
T ss_pred HHHHHcCCCCHHH-HHHHHHHHHHHHHHhh
Confidence 7778888887766 7889999999888873
No 132
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.08 E-value=3.8e-06 Score=90.28 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=73.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCcccccc-C
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS-S 487 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~-~ 487 (665)
++.++..++|+||||+||||+++.++..++..++.+...+-... |.........++++||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------------~~lg~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------------FELGVAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------------HHHGGGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------------HHHHHhcchhHHHHHHHHHHHHHH
Confidence 78888999999999999999999999988776655332221000 0011112335679999997654 1
Q ss_pred CcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCC
Q psy15936 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRP 567 (665)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~ 567 (665)
+. ..... ... ....+.+.++|. ..|+++||+++.+ +++++|
T Consensus 233 r~--l~~~~-~~~-~~~~l~~~ldG~----------------------------------v~v~~~tn~~~~l-~alf~p 273 (377)
T 1svm_A 233 RD--LPSGQ-GIN-NLDNLRDYLDGS----------------------------------VKVNLEKKHLNKR-TQIFPP 273 (377)
T ss_dssp TT--CCCCS-HHH-HHHTTHHHHHCS----------------------------------SCEEECCSSSCCE-EECCCC
T ss_pred hh--ccccC-cch-HHHHHHHHhcCC----------------------------------CeEeeccCchhhH-HHhhcC
Confidence 11 00011 000 112222333331 1478889999999 799999
Q ss_pred CCeeEEEEeCC
Q psy15936 568 GRIDRKIEFPP 578 (665)
Q Consensus 568 gRfd~~I~~~~ 578 (665)
||++..+...+
T Consensus 274 g~ld~~~~~l~ 284 (377)
T 1svm_A 274 GIVTMNEYSVP 284 (377)
T ss_dssp EEEEECSCCCC
T ss_pred cccChhHHhhc
Confidence 99987666644
No 133
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.08 E-value=5.6e-06 Score=80.95 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=28.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li 442 (665)
+++...+++++||||||||++|.++|+.+...++
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4555678999999999999999999999865443
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.88 E-value=2.5e-05 Score=98.48 Aligned_cols=111 Identities=23% Similarity=0.276 Sum_probs=70.3
Q ss_pred hHHHhhC---CCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhh----hhh------------hhccchHH
Q psy15936 403 ELFDALG---IAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL----VQK------------FIGEGSRM 460 (665)
Q Consensus 403 d~f~~~g---~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl----~~~------------~~g~~~~~ 460 (665)
++-..+| +.++.+++|+||||||||+||.+++... +.....++..+. ... .+.+.+..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHH
Confidence 4444455 8899999999999999999999997764 344444443321 111 12345566
Q ss_pred HHHHHHHHHhcCCeEEEEcCccccccCCc---CCCCCCChHHHHHHHHHHHhhcCC
Q psy15936 461 VRELFVMAREHAPSIIFMDEIDSIGSSRI---ESGSGGDSEVQRTMLELLNQLDGF 513 (665)
Q Consensus 461 ~~~if~~a~~~~p~VlliDEID~l~~~~~---~~~~~~~~~~~~~l~~Ll~~~d~~ 513 (665)
.+.++..++...|+++++|+++.+.+... +..+.......+.+.+++.++.++
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~ 1549 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1549 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHH
Confidence 77777777888999999999998776421 111111111334555666555443
No 135
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.82 E-value=6.3e-05 Score=72.13 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
.+.|.||+|+|||||++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999987643
No 136
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.77 E-value=0.00024 Score=74.93 Aligned_cols=175 Identities=12% Similarity=0.095 Sum_probs=107.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC---C-c--eEEEechhhhhhhhccchHHHHHHHHHHH----hcCCeEEEEcCc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE---C-T--FIRVSGSELVQKFIGEGSRMVRELFVMAR----EHAPSIIFMDEI 481 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~---~-~--lirv~~~dl~~~~~g~~~~~~~~if~~a~----~~~p~VlliDEI 481 (665)
.+..+||+||+|.||++.+..++..+. . + .+.++.. ..++.++..+. .....++++||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 455799999999999999999988652 1 1 2222210 11233433332 244679999998
Q ss_pred cc-cccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCC---
Q psy15936 482 DS-IGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI--- 557 (665)
Q Consensus 482 D~-l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~--- 557 (665)
+. +.. ..++.+..++ +...... .+|.+|+.+
T Consensus 86 ~~kl~~-----------~~~~aLl~~l---e~p~~~~-------------------------------~~il~~~~~~~~ 120 (343)
T 1jr3_D 86 ENGPNA-----------AINEQLLTLT---GLLHDDL-------------------------------LLIVRGNKLSKA 120 (343)
T ss_dssp SSCCCT-----------THHHHHHHHH---TTCBTTE-------------------------------EEEEEESCCCTT
T ss_pred CCCCCh-----------HHHHHHHHHH---hcCCCCe-------------------------------EEEEEcCCCChh
Confidence 86 422 2333344444 3322111 344444432
Q ss_pred ---CCCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhccCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Q psy15936 558 ---DILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG-INLRKIAELMPGASGAEVKGVCTEAGMYALRER 633 (665)
Q Consensus 558 ---~~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~~~~~~~-vdl~~la~~t~g~s~~dl~~l~~~A~~~A~~~~ 633 (665)
..+.+++.+ |+ ..+.|.+++..+....++..+...++.-+ ..+..++..+.| +.+++.+.+.....++ .
T Consensus 121 ~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~ 193 (343)
T 1jr3_D 121 QENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---P 193 (343)
T ss_dssp TTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---T
T ss_pred hHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---C
Confidence 345677777 55 57999999999999999988887765422 225566766655 6666666666655443 2
Q ss_pred CCCCCHHHHHHHHHHH
Q psy15936 634 RVHVTQEDFEMAVAKV 649 (665)
Q Consensus 634 ~~~It~~d~~~Al~~~ 649 (665)
...||.+++...+...
T Consensus 194 ~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 194 DGKLTLPRVEQAVNDA 209 (343)
T ss_dssp TCEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhh
Confidence 3468888877665443
No 137
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.69 E-value=0.00011 Score=96.26 Aligned_cols=147 Identities=16% Similarity=0.250 Sum_probs=86.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh-CCceEEEechhhhhhhhccchHHHHHHHHHH---Hh-------------cCCe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVSGSELVQKFIGEGSRMVRELFVMA---RE-------------HAPS 474 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l-~~~lirv~~~dl~~~~~g~~~~~~~~if~~a---~~-------------~~p~ 474 (665)
.+.++||+||||||||.++......+ +..++.++++.... ...+...+... ++ ....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 56789999999999998887665544 55677777765321 12222222211 00 1124
Q ss_pred EEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEe
Q psy15936 475 IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 475 VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatT 554 (665)
|+|+||++.-... .-| .......+.++++...-+.. .....+...+ ..+|+|+
T Consensus 1377 VlFiDDiNmp~~D----~yG-tQ~~ielLrqlld~~g~yd~-----------------~~~~~~~i~d-----~~~vaam 1429 (3245)
T 3vkg_A 1377 VVFCDEINLPSTD----KYG-TQRVITFIRQMVEKGGFWRT-----------------SDHTWIKLDK-----IQFVGAC 1429 (3245)
T ss_dssp EEEETTTTCCCCC----TTS-CCHHHHHHHHHHHHSEEEET-----------------TTTEEEEESS-----EEEEEEE
T ss_pred EEEecccCCCCcc----ccc-cccHHHHHHHHHHcCCeEEC-----------------CCCeEEEecC-----eEEEEEc
Confidence 8999999842111 111 12334445555543211110 0000111111 1588999
Q ss_pred CCCC-----CCCccccCCCCeeEEEEeCCCCHHHHHHHHHHhhcc
Q psy15936 555 NRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594 (665)
Q Consensus 555 n~~~-----~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~~l~~ 594 (665)
|+|. .++++|+| ||. .+.++.|+.++...|+..++..
T Consensus 1430 nPp~~gGr~~l~~Rf~r--~F~-vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1430 NPPTDAGRVQLTHRFLR--HAP-ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCTTSTTCCCCCHHHHT--TCC-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHH
Confidence 9884 48999999 885 6999999999999998876543
No 138
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.59 E-value=0.00022 Score=72.58 Aligned_cols=29 Identities=38% Similarity=0.637 Sum_probs=24.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
++..+++|+||||||||++|.++|+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999997644
No 139
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00011 Score=61.53 Aligned_cols=76 Identities=29% Similarity=0.504 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccccCCCCCceEEecccchhhhhhcCCC
Q psy15936 285 KVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNK 360 (665)
Q Consensus 285 ~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 360 (665)
++..++.+.+.++.+|..+|..+...+++..+++++++.+|++.+.+.++...+.+|++|+++..+.++.++++..
T Consensus 3 ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~~ 78 (85)
T 3h43_A 3 ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPEL 78 (85)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC--
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhhh
Confidence 3566677778889999999999999999999999999999999999999999999999999999998888877654
No 140
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.57 E-value=5.1e-07 Score=99.71 Aligned_cols=74 Identities=14% Similarity=0.019 Sum_probs=55.7
Q ss_pred Ccccceee----eccCCcceEEEec---cC--CeeeeecCCcccccCCCCCceEEecccchhhhhhc---CCCCCcchhh
Q psy15936 300 GSYVGEVV----KPMDKKKVLVKVH---PE--GKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL---PNKVDPLVSL 367 (665)
Q Consensus 300 ~~~~~~~v----~p~~~kt~l~ka~---~~--~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~i~~ 367 (665)
|..++.++ |||+|||.++++- .+ ..|+...++.+..+++++... + +..|..+ ....++++|+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~f~~a~~~~~~~~~il~i 132 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-L-----MENFRRAIGLRIKETKEVYE 132 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-H-----HHHHHHTEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-H-----HHHHHHHHhhhhcCCcEEEE
Confidence 44455554 9999999998872 23 678888889998899887665 3 6677777 6778999999
Q ss_pred hhhccCCCCCcc
Q psy15936 368 MMVEKVPDSTYE 379 (665)
Q Consensus 368 ~eid~i~~~~~~ 379 (665)
|++|.+...+..
T Consensus 133 DEid~l~~~r~~ 144 (456)
T 2c9o_A 133 GEVTELTPCETE 144 (456)
T ss_dssp EEEEEEEEC---
T ss_pred echhhcccccCC
Confidence 999999876643
No 141
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=97.54 E-value=0.00036 Score=69.12 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeccCCcceEEEeccCCeeeeecCCcccc
Q psy15936 256 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDI 335 (665)
Q Consensus 256 ~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~v~p~~~kt~l~ka~~~~~f~~~~~~~l~~ 335 (665)
.++..++.++..+..+...|.+.++++++++..++.+.+.++.+|..++.++...++.+++++ +++..|++.+++.+..
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~ 132 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDA 132 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCH
Confidence 356778888999989999999999999999999999999999999999999988888888888 5778999999999999
Q ss_pred cCCCCCceEEecccchhhhhhcCCC
Q psy15936 336 NDVTPNCRVALRNESYTLHKILPNK 360 (665)
Q Consensus 336 ~~~~~~~~~~l~~~~~~l~~~~~~~ 360 (665)
..+.+|.+|.| +.+..+.++++..
T Consensus 133 e~LkPG~rVaL-NeSlaVVevLp~E 156 (251)
T 3m9b_A 133 ASLKKGQTVRL-NEALTVVEAGTFE 156 (251)
T ss_dssp TTSCSSCEEEE-CTTCCBCCCCCCC
T ss_pred HHCCCCCEEEe-CCccEEEEecCCC
Confidence 99999999999 5677777766554
No 142
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.43 E-value=0.00077 Score=88.55 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=90.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG 492 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~ 492 (665)
..+..+.||+|||||.+++.+|..+|..++.++|++-. +...+..+|.-+.. .....++|||+++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~-~GaW~cfDEfNrl-------- 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQ-CGAWGCFDEFNRL-------- 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHH-HTCEEEEETTTSS--------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhh-cCcEEEehhhhcC--------
Confidence 34567999999999999999999999999999998743 23345566665443 3468899999974
Q ss_pred CCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhc--ccc-hhhhh-ccccEEEEEeCC----CCCCCccc
Q psy15936 493 SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRV--HVT-QEDFE-MAVAKVIMATNR----IDILDPAL 564 (665)
Q Consensus 493 ~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~--~v~-~~df~-~a~~~VIatTn~----~~~Ld~aL 564 (665)
+.++...+.+.+..+.. |++.+.. .+. .+.+. .....|++|.|+ ...|+++|
T Consensus 669 ---~~~vLSvv~~qi~~I~~-----------------a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nL 728 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQV-----------------ALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNL 728 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHH-----------------HHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHH
T ss_pred ---CHHHHHHHHHHHHHHHH-----------------HHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHH
Confidence 34555555544432211 1111100 000 00111 011246777774 35789999
Q ss_pred cCCCCeeEEEEeCCCCHHHHHHHHH
Q psy15936 565 LRPGRIDRKIEFPPPNEEARLDILR 589 (665)
Q Consensus 565 lr~gRfd~~I~~~~P~~eer~~Il~ 589 (665)
+. || +.|.+..||.+...+|+-
T Consensus 729 k~--lF-r~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 729 KK--LF-RSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp HT--TE-EEEECCSCCHHHHHHHHH
T ss_pred Hh--hc-EEEEEeCCCHHHHHHHHH
Confidence 98 88 679999999988887754
No 143
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.40 E-value=0.0052 Score=69.39 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=37.0
Q ss_pred ccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 378 ~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
...+.|-+...+++.+.+... -.....+.|+||+|+|||+||..+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 345789999999998877531 12356789999999999999999875
No 144
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=97.24 E-value=0.0002 Score=65.58 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=49.6
Q ss_pred eEEEEEEeCC-CeEEEEEeCCCeEEEEcCCCcccC------------------CCCCCceeeccccceEEEeecC-CCcc
Q psy15936 180 VGEVVKPMDK-KKVLVKVHPEGKFVVDIDKNIDIN------------------DVTPNCRVALRNESYTLHKILP-NKMD 239 (665)
Q Consensus 180 vg~v~eil~~-~~~iVk~~~~~~~vv~v~~~v~~~------------------~l~pG~~Val~~~~~~i~~iLp-~~~d 239 (665)
|.+|.|++++ +|++|..++|.+.+|++++.+... .|+|||+|.+|.++..+.+.+| +++.
T Consensus 70 v~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ipk~eVe 149 (153)
T 2wfw_A 70 ISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKAGYAFERIPKAEVE 149 (153)
T ss_dssp EEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTTTEEEEEECSCC--
T ss_pred EEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCCceEEEEcCccchh
Confidence 6789999999 899999999999999999998654 7999999999999999999999 5544
Q ss_pred ch
Q psy15936 240 VD 241 (665)
Q Consensus 240 p~ 241 (665)
-+
T Consensus 150 ~L 151 (153)
T 2wfw_A 150 DL 151 (153)
T ss_dssp --
T ss_pred hh
Confidence 33
No 145
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.23 E-value=0.0074 Score=73.77 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=98.8
Q ss_pred CccccCCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhh---C----CceEEEechh-
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---E----CTFIRVSGSE- 448 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l---~----~~lirv~~~d- 448 (665)
....+.|.++.++++.+.+... -.....+.|+|+.|+|||+||+.+++.. . ..++.++...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 3446789999999998877431 1245568899999999999999987652 1 2222333221
Q ss_pred ----hh-------hhhh---------ccchHHHHHHHHHHHhcC--CeEEEEcCccccccCCcCCCCCCChHHHHHHHHH
Q psy15936 449 ----LV-------QKFI---------GEGSRMVRELFVMAREHA--PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506 (665)
Q Consensus 449 ----l~-------~~~~---------g~~~~~~~~if~~a~~~~--p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~L 506 (665)
.. .... ......+...+....... +.++++|+++.. .
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------------~-- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------------W-- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------------H--
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------------H--
Confidence 00 0000 011122233333322223 679999998731 1
Q ss_pred HHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEEeCCCCCCCccccCCCCeeEEEEeCC-CCHHHHH
Q psy15936 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPP-PNEEARL 585 (665)
Q Consensus 507 l~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIatTn~~~~Ld~aLlr~gRfd~~I~~~~-P~~eer~ 585 (665)
.+..+... .+||.||..+...... . .....+.++. ++.++-.
T Consensus 250 --~~~~~~~~-------------------------------~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~ 292 (1249)
T 3sfz_A 250 --VLKAFDNQ-------------------------------CQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGL 292 (1249)
T ss_dssp --HHTTTCSS-------------------------------CEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHH
T ss_pred --HHHhhcCC-------------------------------CEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHH
Confidence 11111110 1689999765433211 1 1223577875 8999999
Q ss_pred HHHHHhhccCCCCCCCCHHHHHHHCCCCCHHHHHH
Q psy15936 586 DILRIHSRKMNLTRGINLRKIAELMPGASGAEVKG 620 (665)
Q Consensus 586 ~Il~~~l~~~~~~~~vdl~~la~~t~g~s~~dl~~ 620 (665)
++|..+.....-........|++.+.|. |-.|+.
T Consensus 293 ~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~ 326 (1249)
T 3sfz_A 293 EILSLFVNMKKEDLPAEAHSIIKECKGS-PLVVSL 326 (1249)
T ss_dssp HHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHHHH
T ss_pred HHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHHHH
Confidence 9998877443322233467899999885 444443
No 146
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.20 E-value=0.0011 Score=64.92 Aligned_cols=37 Identities=35% Similarity=0.415 Sum_probs=28.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
|+.++..++|+||||+|||++++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56778889999999999999999998643 34444443
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.17 E-value=0.0016 Score=64.58 Aligned_cols=26 Identities=42% Similarity=0.572 Sum_probs=24.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVA 434 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia 434 (665)
|+.++..+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67788999999999999999999998
No 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.00044 Score=65.20 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=31.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
+..++|+|+||+||||+++.+++.++.+++.++..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3568999999999999999999999988887665544
No 149
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.00089 Score=71.17 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=49.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh-----h-----------hhccchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ-----K-----------FIGEGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~-----~-----------~~g~~~~~~~~if~~a~ 469 (665)
|+.++..++|+||||+|||+||..++..+ +..+++++...... . .+...+..+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56778889999999999999999998764 44555555432110 0 01111222222222233
Q ss_pred hcCCeEEEEcCcccccc
Q psy15936 470 EHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~ 486 (665)
...++++++|.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999988775
No 150
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.09 E-value=0.0019 Score=63.88 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=49.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh--h-------CCceEEEechhh---------hhhhh-------------c-c
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH--T-------ECTFIRVSGSEL---------VQKFI-------------G-E 456 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~--l-------~~~lirv~~~dl---------~~~~~-------------g-~ 456 (665)
|+.++..++|+||||+|||++++.++.. + +...++++..+. ...+. . .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5778889999999999999999999984 3 345666654331 00000 0 0
Q ss_pred chH----HHHHHHHHHHhcCCeEEEEcCcccccc
Q psy15936 457 GSR----MVRELFVMAREHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 457 ~~~----~~~~if~~a~~~~p~VlliDEID~l~~ 486 (665)
... .+..+......+.|.++++|++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 122233444456899999999987653
No 151
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.03 E-value=0.00081 Score=71.39 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=48.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh----hhhc------------cchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ----KFIG------------EGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~----~~~g------------~~~~~~~~if~~a~ 469 (665)
|+.++..++|+||||+|||+||..++..+ +...++++...-.. ...+ .....+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56788889999999999999999998654 44555554322100 0001 11122222222333
Q ss_pred hcCCeEEEEcCcccccc
Q psy15936 470 EHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~ 486 (665)
...|+++++|++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999998764
No 152
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.99 E-value=0.0019 Score=68.91 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=49.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhh-----h-----------hccchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQK-----F-----------IGEGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~-----~-----------~g~~~~~~~~if~~a~ 469 (665)
|+.++..++|+||||+|||++|..++..+ +..+++++...-... + +...+..+..+-....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56788889999999999999999998754 455555554321100 0 0111222222222233
Q ss_pred hcCCeEEEEcCcccccc
Q psy15936 470 EHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~ 486 (665)
.+.+++++||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999998874
No 153
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.00052 Score=66.43 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+.++..++|.|||||||||+++.++..++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 346678999999999999999999999998886543
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.84 E-value=0.00068 Score=64.68 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
++.++..+.|.||||+||||+++.++..++...+.++..++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 46678889999999999999999999987777777766554
No 155
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.0018 Score=68.78 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=49.9
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechh----hh-hhhh---------c-cchHHHHHHHH-HHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSE----LV-QKFI---------G-EGSRMVRELFV-MAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~d----l~-~~~~---------g-~~~~~~~~if~-~a~ 469 (665)
|+.++..++|+||||+|||++|..++..+ +...+.++... .. ..+. . ........++. ...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56788899999999999999999998754 45566665421 10 0000 0 01122223333 233
Q ss_pred hcCCeEEEEcCcccccc
Q psy15936 470 EHAPSIIFMDEIDSIGS 486 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~ 486 (665)
...+++++||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46789999999998764
No 156
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.83 E-value=0.0089 Score=67.16 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 382 GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 382 ~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.|.+..++++.+.+.. .+-.....+.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~----------~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE----------MCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHH----------HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc----------ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3899999999887732 1122456788999999999999999996
No 157
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.79 E-value=0.00071 Score=64.24 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+..++|+|||||||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999998887643
No 158
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.77 E-value=0.00088 Score=63.82 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=30.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
...+..++|.|+||+||||+++.++..++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45667899999999999999999999998777653
No 159
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.77 E-value=0.0019 Score=62.76 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
|+.++..++|+||||+|||+++..++...+...+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 578888999999999999999999998555566666543
No 160
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.73 E-value=0.0099 Score=59.75 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4577789999999999999999998765
No 161
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.72 E-value=0.0072 Score=61.85 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4577789999999999999999998755
No 162
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.71 E-value=3.5e-05 Score=79.84 Aligned_cols=153 Identities=5% Similarity=-0.138 Sum_probs=76.9
Q ss_pred hcCcccceee----eccCCcceEEEe---ccCCeeeeecCCcccccCCCCCceEEecccchhhhhhc----CCCCCcchh
Q psy15936 298 EQGSYVGEVV----KPMDKKKVLVKV---HPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL----PNKVDPLVS 366 (665)
Q Consensus 298 ~~~~~~~~~v----~p~~~kt~l~ka---~~~~~f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~i~ 366 (665)
..+...|.++ |||+|||.++++ ..+..|+....+++...++|.....+ +.+|..+ ....+++++
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i-----~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHH-----HHHHHHHHHHHTTSSCCCEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHH-----HHHHHHHHHHHhcCCCeEEE
Confidence 3456666665 999999999887 34567888777888888877665544 5566555 677899999
Q ss_pred hhhhccCCCCCccccC---CChHHHHHHHHHhhcCC-CchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHhhCCceE
Q psy15936 367 LMMVEKVPDSTYEMVG---GLDNQIKEIKEVIELPV-KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442 (665)
Q Consensus 367 ~~eid~i~~~~~~~i~---G~~~~~~~l~~~l~l~l-~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~li 442 (665)
+|++|.+.......-. ........+.+.+...- ...+.+. +......+++.+ +++..+.++.++.
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~--~~~~~~~v~vI~---------ttN~~~~ld~al~ 173 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY--NKQENARVPIIV---------TGNDFSTLYAPLI 173 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-------------CCCCCCEEE---------ECSSCCC--CHHH
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccccc--ccccCCCcEEEE---------ecCCcccCCHHHh
Confidence 9999998763321111 11123344444443110 0011111 111223344444 2233344566666
Q ss_pred EEechhhhhhhhccchHHHHHHHHHH
Q psy15936 443 RVSGSELVQKFIGEGSRMVRELFVMA 468 (665)
Q Consensus 443 rv~~~dl~~~~~g~~~~~~~~if~~a 468 (665)
+.++.+..... ++...+..++...
T Consensus 174 R~~R~d~~i~~--P~~~~r~~Il~~~ 197 (293)
T 3t15_A 174 RDGRMEKFYWA--PTREDRIGVCTGI 197 (293)
T ss_dssp HHHHEEEEEEC--CCHHHHHHHHHHH
T ss_pred CCCCCceeEeC--cCHHHHHHHHHHh
Confidence 55555543333 4666667777653
No 163
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.69 E-value=0.0017 Score=82.32 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=59.2
Q ss_pred CchhHHHhh---CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhhhh----hc--------cchHHH
Q psy15936 400 KHPELFDAL---GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKF----IG--------EGSRMV 461 (665)
Q Consensus 400 ~~~d~f~~~---g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~~~----~g--------~~~~~~ 461 (665)
..+++...+ |+.++..++|+|+||+|||+||.++|..+ +.++++++..+..... .+ ..+...
T Consensus 716 G~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i 795 (2050)
T 3cmu_A 716 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSH
T ss_pred CChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCH
Confidence 344566666 48899999999999999999999999865 3457777665432221 11 111223
Q ss_pred HHHHHHHHh----cCCeEEEEcCcccccc
Q psy15936 462 RELFVMARE----HAPSIIFMDEIDSIGS 486 (665)
Q Consensus 462 ~~if~~a~~----~~p~VlliDEID~l~~ 486 (665)
..++..++. +.|+++++|.++.+..
T Consensus 796 ~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 796 EQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 444444433 6789999999998875
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.66 E-value=0.003 Score=66.17 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=50.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---------CCceEEEechhh---------hhhh-------------hc--
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---------ECTFIRVSGSEL---------VQKF-------------IG-- 455 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---------~~~lirv~~~dl---------~~~~-------------~g-- 455 (665)
|+.++..++|+||||+|||++|..++... +...++++...- ...+ ..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 67788899999999999999999998764 445566554321 0001 00
Q ss_pred cch---HHHHHHHHHHHh-cCCeEEEEcCcccccc
Q psy15936 456 EGS---RMVRELFVMARE-HAPSIIFMDEIDSIGS 486 (665)
Q Consensus 456 ~~~---~~~~~if~~a~~-~~p~VlliDEID~l~~ 486 (665)
... ..+..+...... ..+.++++|.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 112233344444 6789999999998764
No 165
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.66 E-value=0.006 Score=60.87 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5677889999999999999999998754
No 166
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.64 E-value=0.0049 Score=62.74 Aligned_cols=28 Identities=36% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4577789999999999999999998754
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.63 E-value=0.0011 Score=67.31 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=44.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc---eEEEechhhhh------hhh-----ccchHHHHHHHHHHHhcCCeE
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSGSELVQ------KFI-----GEGSRMVRELFVMAREHAPSI 475 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~---lirv~~~dl~~------~~~-----g~~~~~~~~if~~a~~~~p~V 475 (665)
+.++..++|.||+|+||||++++++..+.+. -+.+...++.. .+. +......+..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4677789999999999999999999865321 12222111100 000 001122355566666678999
Q ss_pred EEEcCc
Q psy15936 476 IFMDEI 481 (665)
Q Consensus 476 lliDEI 481 (665)
+++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999996
No 168
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.62 E-value=0.0086 Score=59.81 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35677889999999999999999998765
No 169
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.59 E-value=0.0056 Score=65.13 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 5677889999999999999999999755
No 170
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.0013 Score=62.30 Aligned_cols=34 Identities=35% Similarity=0.591 Sum_probs=29.3
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
..+..++|+|+||+||||+++.++..++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998877654
No 171
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.59 E-value=0.0002 Score=58.83 Aligned_cols=72 Identities=46% Similarity=0.704 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 455 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 455 g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
.|+...+..||+...... -+-+++| +..+...++||+|++ +.++|.+|++.++++.
T Consensus 2 lPd~~~R~~Il~~~l~~~---~~~~~~d--------------------l~~la~~t~G~SGAD-i~~l~~eA~~~a~~~~ 57 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKM---NLTRGIN--------------------LRKIAELMPGASGAE-VKGVCTEAGMYALRER 57 (78)
T ss_dssp CCCHHHHHHHHHHHHTTS---EECTTCC--------------------HHHHHHTCTTCCHHH-HHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCC---CCCCccC--------------------HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhC
Confidence 356677788998765543 2335666 888999999999998 9999999999999999
Q ss_pred hcccchhhhhccccEE
Q psy15936 535 RVHVTQEDFEMAVAKV 550 (665)
Q Consensus 535 r~~v~~~df~~a~~~V 550 (665)
+..|+.+||..+...+
T Consensus 58 ~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 58 RVHVTQEDFEMAVAKV 73 (78)
T ss_dssp CSEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999887654
No 172
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.59 E-value=0.0049 Score=65.97 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4677788999999999999999999755
No 173
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.57 E-value=0.00026 Score=59.44 Aligned_cols=72 Identities=46% Similarity=0.705 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhh
Q psy15936 455 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534 (665)
Q Consensus 455 g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~ 534 (665)
.|+...+..||+...... -+-+++| +..+...++||+|++ +.++|.+|++.++++.
T Consensus 10 ~Pd~~~R~~IL~~~l~~~---~l~~dvd--------------------l~~LA~~T~G~SGAD-L~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKM---NLTRGIN--------------------LRKIAELMPGASGAE-VKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCHHHHHHHHHHHTTTS---EECTTCC--------------------CHHHHHTCSSCCHHH-HHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHcCC---CCCcccC--------------------HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHc
Confidence 456777889998865443 2335666 678899999999998 9999999999999999
Q ss_pred hcccchhhhhccccEE
Q psy15936 535 RVHVTQEDFEMAVAKV 550 (665)
Q Consensus 535 r~~v~~~df~~a~~~V 550 (665)
...|+.+||..+...+
T Consensus 66 ~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 66 RVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CSEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999886543
No 174
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.56 E-value=0.0048 Score=65.15 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
|+.++..++|+||||+|||++|..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778888999999999999999999885
No 175
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.56 E-value=0.0038 Score=67.43 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
|+.++..+.|+||||+|||+|+..++-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 678889999999999999999997763
No 176
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.56 E-value=0.00026 Score=59.67 Aligned_cols=74 Identities=28% Similarity=0.393 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhccc
Q psy15936 459 RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHV 538 (665)
Q Consensus 459 ~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v 538 (665)
..+..||+......| +-+++| +..+...++||+|++ +.++|.+|++.++++.+..|
T Consensus 4 ~~R~~Il~~~~~~~~---~~~dvd--------------------l~~lA~~t~G~SGAD-l~~l~~eAa~~a~r~~~~~i 59 (88)
T 3vlf_B 4 EGRANIFRIHSKSMS---VERGIR--------------------WELISRLCPNSTGAE-LRSVCTEAGMFAIRARRKVA 59 (88)
T ss_dssp SHHHHHHHHHHTTSC---BCSCCC--------------------HHHHHHTCSSCCHHH-HHHHHHHHHHHHHHHSCSSB
T ss_pred HHHHHHHHHHHCCCC---CCCccC--------------------HHHHHHHcCCCcHHH-HHHHHHHHHHHHHHhccccC
Confidence 345778887655544 225666 788999999999998 99999999999999999999
Q ss_pred chhhhhccccEEEEEeCC
Q psy15936 539 TQEDFEMAVAKVIMATNR 556 (665)
Q Consensus 539 ~~~df~~a~~~VIatTn~ 556 (665)
+.+||..+...|+.....
T Consensus 60 ~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 60 TEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp CHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHhcCccc
Confidence 999999998887755543
No 177
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.52 E-value=0.0019 Score=68.63 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=45.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC----CceEEEech-hhhh---------hhhccchHHHHHHHHHHHhcCCeEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE----CTFIRVSGS-ELVQ---------KFIGEGSRMVRELFVMAREHAPSIIF 477 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~----~~lirv~~~-dl~~---------~~~g~~~~~~~~if~~a~~~~p~Vll 477 (665)
++..+++.||+|+||||++++++..+. ..++.+.-. ++.. ...+.........+..+..+.|++++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 455789999999999999999988663 223322110 1100 00111122345577788889999999
Q ss_pred EcCcc
Q psy15936 478 MDEID 482 (665)
Q Consensus 478 iDEID 482 (665)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99964
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.52 E-value=0.0016 Score=61.03 Aligned_cols=31 Identities=29% Similarity=0.629 Sum_probs=26.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
+..+.|+||+||||||+++.++..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3568999999999999999999999876553
No 179
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.51 E-value=0.0015 Score=60.76 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=28.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
.++|.|+||+||||+++.++..++..++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 57899999999999999999999988866553
No 180
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.50 E-value=0.0048 Score=64.22 Aligned_cols=78 Identities=10% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh-----CCceEEEechhh-----hhhh-----------hccchHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSEL-----VQKF-----------IGEGSRMVRELFVM 467 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l-----~~~lirv~~~dl-----~~~~-----------~g~~~~~~~~if~~ 467 (665)
|+.++ .++++||||+|||+||-.++... +...++++...- ...+ +...+.....+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46666 78999999999999988776543 455666654321 1110 11111110222222
Q ss_pred ---HHhcCCeEEEEcCccccccC
Q psy15936 468 ---AREHAPSIIFMDEIDSIGSS 487 (665)
Q Consensus 468 ---a~~~~p~VlliDEID~l~~~ 487 (665)
.....|+++++|-|..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 24467999999999998753
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.50 E-value=0.012 Score=57.89 Aligned_cols=37 Identities=38% Similarity=0.504 Sum_probs=29.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
|+.++..++++||||+|||++|..++... +...+.++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67788899999999999999998887643 44555544
No 182
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.45 E-value=0.012 Score=60.12 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35677889999999999999999998755
No 183
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.45 E-value=0.0015 Score=61.59 Aligned_cols=30 Identities=33% Similarity=0.580 Sum_probs=26.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.++|.|+||+||||+|+.+|..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999877653
No 184
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.44 E-value=0.0094 Score=58.95 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45677889999999999999999997653
No 185
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.42 E-value=0.012 Score=61.08 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=25.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 56788899999999999999999987653
No 186
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.42 E-value=0.0018 Score=61.85 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=27.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh-hCCceEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH-TECTFIR 443 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~-l~~~lir 443 (665)
.+..++|+|+|||||||+++.++.. ++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 4567999999999999999999998 6766654
No 187
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.39 E-value=0.01 Score=62.97 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4567788999999999999999999754
No 188
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.38 E-value=0.0018 Score=61.35 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=27.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++|+|+|||||||+|+.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999998876543
No 189
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.35 E-value=0.096 Score=51.77 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=24.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh---CCceEEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT---ECTFIRV 444 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l---~~~lirv 444 (665)
-.+++.|+||+|||+++-++|..+ |..++.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 358999999999999999998865 5554433
No 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.34 E-value=0.0098 Score=63.07 Aligned_cols=28 Identities=39% Similarity=0.538 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567788999999999999999999765
No 191
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.33 E-value=0.022 Score=57.66 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35677889999999999999999998754
No 192
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.30 E-value=0.0018 Score=63.89 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=28.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
..++..++|.|+|||||||+|+.++..++..++..
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34567799999999999999999999998776554
No 193
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.30 E-value=0.0025 Score=61.47 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=28.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.+..++|.|+||+||||+|+.++..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345689999999999999999999999876554
No 194
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0054 Score=65.17 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4677788999999999999999999755
No 195
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.29 E-value=0.017 Score=58.29 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677889999999999999999998765
No 196
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.28 E-value=0.013 Score=59.52 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 56778899999999999999999997653
No 197
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.28 E-value=0.012 Score=69.77 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
+.++..+.|+||+|+||||+.+.++.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 44567899999999999999999874
No 198
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.27 E-value=0.0076 Score=64.38 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4567788999999999999999999765
No 199
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.0022 Score=60.88 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..|+|.|+|||||||+|+.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999998766543
No 200
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.26 E-value=0.0027 Score=65.40 Aligned_cols=39 Identities=33% Similarity=0.541 Sum_probs=31.5
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
..+..++|.||||+||||+|+.++..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345678999999999999999999988656677776444
No 201
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.26 E-value=0.0024 Score=59.68 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
..++|.|++||||||+++.++..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4789999999999999999999999888754
No 202
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.24 E-value=0.0023 Score=61.07 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=29.2
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
++..++|.|+|||||||+|+.++..++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4567999999999999999999999988766543
No 203
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.23 E-value=0.011 Score=59.11 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=23.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.+ ..+.|.||+|+|||||++.++..+
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 456 788899999999999999999765
No 204
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.22 E-value=0.0026 Score=62.28 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=28.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
++..++|.|+||+||||+|+.++..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456789999999999999999999999766554
No 205
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.21 E-value=0.01 Score=63.10 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4567788999999999999999999765
No 206
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.20 E-value=0.012 Score=62.93 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4577788999999999999999999754
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.20 E-value=0.004 Score=58.78 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSE 448 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~d 448 (665)
.++..+.|.|++|+||||+++.++..+ +.+++.++...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 356678899999999999999999988 88888776543
No 208
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.19 E-value=0.0032 Score=60.73 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=27.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..++|+|++|+||||+|+.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998776653
No 209
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.18 E-value=0.0029 Score=63.82 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=28.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
.++|.|||||||||+|+.+|..++..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999888776653
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.18 E-value=0.008 Score=58.65 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
|+.++..+.|.||+|+|||||++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67788889999999999999999999843
No 211
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.18 E-value=0.01 Score=59.96 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=30.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh---hCCceEEEechhhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELV 450 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~---l~~~lirv~~~dl~ 450 (665)
.+..++|+|+||+||||+|+.++.. .|..++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3456899999999999999999997 67777755655443
No 212
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.18 E-value=0.0027 Score=60.13 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=26.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
+..++|.|+|||||||+++.++..++..++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999999866544
No 213
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.18 E-value=0.0024 Score=59.22 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=25.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.++|+||||+||||+|+.+ ..++.+++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8888877654
No 214
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.16 E-value=0.0028 Score=59.75 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARA 432 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~a 432 (665)
+.++..+.|+||+|+||||+++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 35677899999999999999994
No 215
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.15 E-value=0.0025 Score=62.97 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=31.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~ 450 (665)
+..++.++|.||||+||+|.|+.+++.++.+.+ +..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 456778899999999999999999999986654 444443
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.14 E-value=0.003 Score=63.60 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl 449 (665)
...+..++|.|+||+||||+|+.++..++..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456779999999999999999999999866666666554
No 217
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.14 E-value=0.016 Score=61.36 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4577788999999999999999999765
No 218
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.14 E-value=0.0039 Score=60.18 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=27.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~li 442 (665)
.++..+.|.||+|+||||+++.++..+|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 45678999999999999999999999875444
No 219
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.14 E-value=0.0025 Score=60.38 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+..++|.|+||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 220
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.13 E-value=0.0038 Score=58.59 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=26.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
++..++|+||+|+||||+++.++..++..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34578999999999999999999988765543
No 221
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.11 E-value=0.0076 Score=63.80 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=26.6
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
|+.++..+.|+||||+|||+|+..++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67788899999999999999999999876
No 222
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.11 E-value=0.0028 Score=59.18 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=26.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.++|.|+|||||||+|+.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987665
No 223
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.10 E-value=0.0028 Score=59.76 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=23.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 442 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~li 442 (665)
+..++|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999999998876
No 224
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.09 E-value=0.0024 Score=62.57 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=28.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..++|.|+||+||||+|+.++..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45689999999999999999999998777654
No 225
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.05 E-value=0.0031 Score=59.09 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHH-hhCCce
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAH-HTECTF 441 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~-~l~~~l 441 (665)
..++|.|+||+||||+|+.++. .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4588999999999999999998 455433
No 226
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.05 E-value=0.0079 Score=63.82 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|||||||++.++...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4577788999999999999999999754
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.05 E-value=0.0046 Score=66.09 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=46.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCC----ceEEEech-hh----hhhhhcc-----chHHHHHHHHHHHhcCCe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGS-EL----VQKFIGE-----GSRMVRELFVMAREHAPS 474 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~----~lirv~~~-dl----~~~~~g~-----~~~~~~~if~~a~~~~p~ 474 (665)
.+.++..+++.||+|+||||++++++..+.+ .++..+.. ++ ...+..+ ........+..+....|+
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 3567778999999999999999999986642 23333211 00 0001111 112234556666677899
Q ss_pred EEEEcCcc
Q psy15936 475 IIFMDEID 482 (665)
Q Consensus 475 VlliDEID 482 (665)
++++||+-
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999973
No 228
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.027 Score=55.45 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=28.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh----hCCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH----TECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~----l~~~lirv~ 445 (665)
|+.++.-++++|+||+|||++|..+|.. .+.+.+.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 6788889999999999999999987643 245555543
No 229
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.01 E-value=0.0055 Score=59.13 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL 449 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl 449 (665)
.++..+.|.||+|+||||+++.++..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 466788999999999999999999988 444345555443
No 230
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.01 E-value=0.0035 Score=59.35 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=27.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..++|.|+|||||||+|+.++..++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999998766544
No 231
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.00 E-value=0.0027 Score=60.87 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=20.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.-++++||+|+|||+++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999997776543
No 232
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.00 E-value=0.0032 Score=60.15 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=27.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.+..++|.|+||+||||+|+.++..++..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345789999999999999999999998665543
No 233
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.00 E-value=0.022 Score=57.47 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45777899999999999999999998653
No 234
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.99 E-value=0.0038 Score=60.10 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+..|+|+|+|||||||+++.+++.++..++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3456889999999999999999999987665543
No 235
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=95.98 E-value=0.022 Score=52.08 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=49.9
Q ss_pred HHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccceEEEeecC
Q psy15936 171 QLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILP 235 (665)
Q Consensus 171 ~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~~~i~~iLp 235 (665)
++|..||+--|+++..-+++.+=| .++|-++.|.+++.++...|.||..|-|| ..+.|++..+
T Consensus 1 ~~L~qPPstygt~l~~~~d~tadV-~t~GRkMrv~vsP~vd~~~L~~Gq~V~LN-Eal~VVea~~ 63 (153)
T 2wfw_A 1 DRLGQPPSGYGVLLSVHEDKTVDV-FTSGRKMRLTCSPNIDTDTLALGQTVRLN-EALTIVEAGT 63 (153)
T ss_dssp ------CBEEEEEEEECTTSCEEE-EETTEEEEECBCTTCCGGGCCTTCEEEEC-TTCCEEEECC
T ss_pred CcccCCCcceEEEEEEcCCCeEEE-EECCcEEEEEeCCCCCHHHCCCCCEEEEC-CceEEEEccC
Confidence 357889999999999888765444 44777899999999999999999999998 5999999885
No 236
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.98 E-value=0.0043 Score=61.50 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=28.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.+..++|.|+|||||||+|+.++..++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999999999776654
No 237
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.96 E-value=0.004 Score=62.34 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++..++|+||||+||||+|+.+++.++...+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 46678999999999999999999999987665543
No 238
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.94 E-value=0.0038 Score=60.86 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++|+||||+||||+|+.++..++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4789999999999999999999987766543
No 239
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.94 E-value=0.0085 Score=64.40 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=24.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+.++..+.|.||+|||||||++.++..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 567888999999999999999999964
No 240
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.93 E-value=0.0038 Score=60.76 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=26.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++|.||||+||||+|+.++..++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 3789999999999999999999987776543
No 241
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.90 E-value=0.0041 Score=57.78 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.++|.|+||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999877653
No 242
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.89 E-value=0.023 Score=57.15 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45777899999999999999999987653
No 243
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.82 E-value=0.023 Score=67.66 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVA 434 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia 434 (665)
..+..++|+||+|+||||+.+.++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999994
No 244
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.80 E-value=0.0045 Score=60.70 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=27.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.+..++|.||||+||||+++.++..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999865543
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.77 E-value=0.011 Score=61.64 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.2
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
|++++..++|+||||+|||++|..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778888999999999999999999864
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.73 E-value=0.0056 Score=61.11 Aligned_cols=32 Identities=22% Similarity=0.492 Sum_probs=27.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
++..+.|.||||+||||+++.++..++...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46789999999999999999999998865543
No 247
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.71 E-value=0.0051 Score=60.17 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=26.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.++|.||||+||+|.|+.+++.++.+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 378899999999999999999998776553
No 248
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.70 E-value=0.035 Score=62.72 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++++..+.+.||+|+|||||++.++..+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 56788899999999999999999987654
No 249
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.70 E-value=0.018 Score=65.19 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++++..+.+.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678889999999999999999998755
No 250
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.68 E-value=0.044 Score=62.00 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=25.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++++..+.+.||+|+|||||++.++....
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 56788899999999999999999987654
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.66 E-value=0.009 Score=57.26 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=28.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh-CCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l-~~~lirv~ 445 (665)
++..+.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45678999999999999999999998 46666543
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.62 E-value=0.019 Score=71.93 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=67.3
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHh---hCCceEEEec----------------hhhhhhhhccchHHHHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHH---TECTFIRVSG----------------SELVQKFIGEGSRMVRELFVMAR 469 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~---l~~~lirv~~----------------~dl~~~~~g~~~~~~~~if~~a~ 469 (665)
|+++++.+.++||+|||||+||-.++.+ .+.....++. ..+....|...+..+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 3456677999999999999999888643 3433333332 22233356666777777788888
Q ss_pred hcCCeEEEEcCccccccCCcCCCCC--CChH-HHHHHHHHHHhhcCC
Q psy15936 470 EHAPSIIFMDEIDSIGSSRIESGSG--GDSE-VQRTMLELLNQLDGF 513 (665)
Q Consensus 470 ~~~p~VlliDEID~l~~~~~~~~~~--~~~~-~~~~l~~Ll~~~d~~ 513 (665)
...++++++|.+..|.+...-.+.- .+-. ..+.+.+.++.+.++
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~ 1553 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1553 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 8999999999999998765322111 1111 234455666655543
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.62 E-value=0.026 Score=55.86 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=41.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe--chhh-----hhhhh----ccchHHHHHHHHHHHh----cCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS--GSEL-----VQKFI----GEGSRMVRELFVMARE----HAP 473 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~--~~dl-----~~~~~----g~~~~~~~~if~~a~~----~~p 473 (665)
++.-++++||+|+||||++..++..+ +...+.+. .... ..... .........++..+.. ..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 34567889999999999999888765 33444432 1111 11110 0000112345555443 347
Q ss_pred eEEEEcCcccc
Q psy15936 474 SIIFMDEIDSI 484 (665)
Q Consensus 474 ~VlliDEID~l 484 (665)
.++++||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999854
No 254
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.58 E-value=0.0076 Score=58.92 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=27.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..+.|.||+||||||+++.++..++.+++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999998766543
No 255
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.58 E-value=0.06 Score=53.45 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=25.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
..++++||+|+|||.++..++..++...+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 35899999999999999999888865555443
No 256
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.55 E-value=0.013 Score=56.53 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.+.|.||+||||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 7776653
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.50 E-value=0.027 Score=58.48 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=44.5
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh-------hh------------hc-cchHHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ-------KF------------IG-EGSRMVRELFVM 467 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~-------~~------------~g-~~~~~~~~if~~ 467 (665)
.++..+++.||+|+||||++.++|..+ +..+..+++..+.. .+ .+ .........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456778999999999999999999865 34455444322110 00 01 111122234445
Q ss_pred HHhcCCeEEEEcCcc
Q psy15936 468 AREHAPSIIFMDEID 482 (665)
Q Consensus 468 a~~~~p~VlliDEID 482 (665)
+....+.++++|+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 556788999999754
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.48 E-value=0.0081 Score=56.79 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=22.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++|.|+||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.47 E-value=0.0083 Score=57.34 Aligned_cols=29 Identities=14% Similarity=0.478 Sum_probs=25.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.+.|.|++||||||+++.++..++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999976654
No 260
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.47 E-value=0.0062 Score=59.33 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=26.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
.++|.|+||+||||+|+.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998776554
No 261
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.45 E-value=0.00034 Score=58.05 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEE
Q psy15936 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552 (665)
Q Consensus 503 l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIa 552 (665)
+..+...++|++|++ +.++|.+|++.++++.+..|+.+||..+...++.
T Consensus 22 l~~lA~~t~G~SGAD-i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 22 LDSLIIRNDSLSGAV-IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 70 (82)
T ss_dssp STTTTTSSCCCCHHH-HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHc
Confidence 456677889999998 9999999999999999999999999999877653
No 262
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.42 E-value=0.011 Score=55.93 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=26.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
.+.|.|++||||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 77777654
No 263
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.41 E-value=0.0094 Score=60.08 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=29.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+..+.|.|++|+||||+++.++..++..++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 668999999999999999999999998876643
No 264
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.41 E-value=0.0097 Score=56.43 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++..+.|.||+|+|||||++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998764
No 265
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.40 E-value=0.009 Score=62.47 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=29.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
..++|+||+|||||+++..+|..++..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988877654
No 266
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.36 E-value=0.079 Score=57.94 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~ 445 (665)
|+.++.-++|.|+||+|||+++..++..+ +.+++.++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 78889999999999999999999998753 44565554
No 267
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.35 E-value=0.056 Score=52.23 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=24.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv 444 (665)
...+++|+++|.|||++|-.+|-.. |..+..+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3468889999999999999997653 5555444
No 268
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.32 E-value=0.0072 Score=58.16 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+.|+|++||||||+++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 886665543
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.32 E-value=0.0095 Score=57.17 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+||||+++.++..+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34677899999999999999999999873
No 270
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.31 E-value=0.0099 Score=57.16 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
+..|+|.|+||+||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568899999999999999999998763
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.31 E-value=0.011 Score=57.28 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=25.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
..++..++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35677899999999999999999999875
No 272
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.30 E-value=0.06 Score=61.07 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=26.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.+.||+|+|||||++.++....
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 357788899999999999999999987654
No 273
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.29 E-value=0.0053 Score=64.54 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=47.8
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechh-hh-----h--hhhccchHHHHHHHHHHHhcCCeEEEEcC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSE-LV-----Q--KFIGEGSRMVRELFVMAREHAPSIIFMDE 480 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~d-l~-----~--~~~g~~~~~~~~if~~a~~~~p~VlliDE 480 (665)
.++..+++.||+|+||||++++++..+.+ ..+.++... +. . .+........+..+..+....|.++++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 35678999999999999999999988753 244444321 10 0 01100122345666677778999999999
Q ss_pred cc
Q psy15936 481 ID 482 (665)
Q Consensus 481 ID 482 (665)
.-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.27 E-value=0.0067 Score=64.13 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=26.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
..++|+||+|+|||++++++|..++..|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 459999999999999999999998877643
No 275
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.27 E-value=0.011 Score=58.09 Aligned_cols=29 Identities=28% Similarity=0.551 Sum_probs=25.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.++|.|+||+||||+++.++..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999865544
No 276
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.24 E-value=0.084 Score=58.87 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHH
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAV 433 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~ai 433 (665)
++.++..++|.||+|+|||||++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4568889999999999999999994
No 277
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.22 E-value=0.12 Score=57.85 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=52.0
Q ss_pred eEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcccchhhhhccccEEEEE
Q psy15936 474 SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553 (665)
Q Consensus 474 ~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~v~~~df~~a~~~VIat 553 (665)
-++++||+..+.... ..+....+..+++....+. + .+|++
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GRa~G----I-----------------------------hLIla 384 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKARAAG----I-----------------------------HLILA 384 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCTTTT----E-----------------------------EEEEE
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHhhCC----e-----------------------------EEEEE
Confidence 489999998765421 1244555666665543221 1 48889
Q ss_pred eCCCC--CCCccccCCCCeeEEEEeCCCCHHHHHHHHH
Q psy15936 554 TNRID--ILDPALLRPGRIDRKIEFPPPNEEARLDILR 589 (665)
Q Consensus 554 Tn~~~--~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~ 589 (665)
|.+|. .++..++. -|..+|.|...+..+...|+.
T Consensus 385 TQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 385 TQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp ESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred ecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 98887 78888876 788889999999988888874
No 278
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.22 E-value=0.014 Score=55.50 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred EEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
+.|.|++||||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88776543
No 279
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.21 E-value=0.014 Score=58.23 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+..+.|.||+|+||||+++.++..++..++..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 3457899999999999999999999987765543
No 280
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.20 E-value=0.014 Score=56.72 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.++.-+.|.||+|+||||+++.++..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35667889999999999999999998764
No 281
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.17 E-value=0.069 Score=60.47 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++++..+.+.||+|+|||||++.++..+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 56788899999999999999999987654
No 282
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.14 E-value=0.015 Score=58.51 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=27.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
++..+.|.||+||||||+++.++..++..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 45678899999999999999999999876654
No 283
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.11 E-value=0.0034 Score=51.89 Aligned_cols=73 Identities=30% Similarity=0.493 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhcCCcccCccccccccchhhhhhhhhcc
Q psy15936 458 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVH 537 (665)
Q Consensus 458 ~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d~~~~~~~i~~vc~eAg~~air~~r~~ 537 (665)
...+..||+......| +-+++| +..+...++|++|++ +.++|.+|++.++++.+..
T Consensus 3 ~~~R~~Il~~~l~~~~---~~~~vd--------------------l~~la~~t~G~SGAD-i~~l~~eA~~~a~~~~~~~ 58 (83)
T 3aji_B 3 RRQKRLIFSTITSKMN---LSEEVD--------------------LEDYVARPDKISGAD-INSICQESGMLAVRENRYI 58 (83)
T ss_dssp HHHHHHHHHHHHTTSC---BCTTCC--------------------THHHHTSSCCCCHHH-HHHHHHHHHHGGGTSCCSS
T ss_pred HHHHHHHHHHHhCCCC---CCcccC--------------------HHHHHHHcCCCCHHH-HHHHHHHHHHHHHHhccCC
Confidence 3456778877655443 124555 778889999999998 9999999999999999999
Q ss_pred cchhhhhccccEEEEEe
Q psy15936 538 VTQEDFEMAVAKVIMAT 554 (665)
Q Consensus 538 v~~~df~~a~~~VIatT 554 (665)
|+.+||..+...+.-++
T Consensus 59 i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 59 VLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp BCHHHHHHHHHHHCC--
T ss_pred cCHHHHHHHHHHHccCc
Confidence 99999999877665433
No 284
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.07 E-value=0.049 Score=59.44 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~ 445 (665)
|+.++.-++|.|+||+|||++|.++|... +.+++.++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78889999999999999999999998643 44555544
No 285
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.06 E-value=0.0068 Score=58.53 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=25.2
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
.+..+.|.|++||||||+++.++..++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45678999999999999999999987644
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.05 E-value=0.042 Score=59.82 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhhh----------h---------hhc-cchHHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ----------K---------FIG-EGSRMVRELFVMA 468 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~~----------~---------~~g-~~~~~~~~if~~a 468 (665)
++..+++.|++|+||||++.++|..+ +..+..+++..+.. . ..+ .........+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999999765 44454444322100 0 011 1222345566666
Q ss_pred HhcCCeEEEEcCcc
Q psy15936 469 REHAPSIIFMDEID 482 (665)
Q Consensus 469 ~~~~p~VlliDEID 482 (665)
..+.++++++|-..
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 66678999999864
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.03 E-value=0.014 Score=55.96 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=27.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.+.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998776644
No 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.01 E-value=0.13 Score=61.58 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 382 GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 382 ~G~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.|.++.++++.+.+.. ....+.+.|+|+.|+|||+||+.+++
T Consensus 131 VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 6888888888887642 12356788999999999999999985
No 289
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.98 E-value=0.015 Score=55.79 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.3
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++..+.|.||+|+||||+++.++..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566788999999999999999998763
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.93 E-value=0.0078 Score=58.18 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.++..++|.|++||||||+++.++..++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35677999999999999999999998753
No 291
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.87 E-value=0.014 Score=61.32 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
.+..++|.||+|+|||+|+..+|..++..++..+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345788999999999999999999999887776554
No 292
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.85 E-value=0.04 Score=61.73 Aligned_cols=91 Identities=15% Similarity=0.251 Sum_probs=57.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc----------eEEEe--------c--hhhhh------------------
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT----------FIRVS--------G--SELVQ------------------ 451 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~----------lirv~--------~--~dl~~------------------ 451 (665)
+.++..+.|.||+|+|||||++.++..+.+. +-.+. . .+...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 3567789999999999999999999754211 11100 0 00000
Q ss_pred ----------hhh--ccchHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 452 ----------KFI--GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 452 ----------~~~--g~~~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
..+ .......+-.+..+....|.++++|| +.++.|...+..+.+++..+
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHH
Confidence 001 11112234445556667899999999 67788888888888888765
No 293
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.85 E-value=0.019 Score=55.94 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=26.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..+.|.|++||||||+++.++. ++.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 77766543
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.84 E-value=0.012 Score=56.84 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.4
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh-CCceEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIR 443 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l-~~~lir 443 (665)
.++..+.|.|++|+||||+++.++..+ +..++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 445668899999999999999999987 444443
No 295
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.082 Score=60.04 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..++..+-|.||+|+|||||++.++..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3567789999999999999999999755
No 296
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.82 E-value=0.02 Score=55.64 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=31.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC----CceEEEechhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE----CTFIRVSGSEL 449 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~----~~lirv~~~dl 449 (665)
..++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34667789999999999999999999775 44666665443
No 297
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.82 E-value=0.018 Score=53.73 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=26.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45677789999999999999999999987
No 298
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.82 E-value=0.015 Score=55.62 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=26.1
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.+..+.|.|++||||||+++.++.. +.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 3456889999999999999999998 766554
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.76 E-value=0.064 Score=58.08 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC---ceEEEech-hhhh------hhhccchHHHHHHHHHHHhcCCeEEEEcCc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSGS-ELVQ------KFIGEGSRMVRELFVMAREHAPSIIFMDEI 481 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~---~lirv~~~-dl~~------~~~g~~~~~~~~if~~a~~~~p~VlliDEI 481 (665)
++..+++.||+|+||||++++++..+.+ .++..+-. ++.. .+...........+..+....|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4556899999999999999999998753 23333211 1000 000000112234445556678999999986
Q ss_pred c
Q psy15936 482 D 482 (665)
Q Consensus 482 D 482 (665)
.
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 4
No 300
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.75 E-value=0.013 Score=56.91 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567788999999999999999999875
No 301
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.74 E-value=0.016 Score=55.96 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
..+.|+|++||||||+++.++..+|.+++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 45789999999999999999999887776533
No 302
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.69 E-value=0.15 Score=56.79 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechh----hhhh---h-------------------h--ccc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSE----LVQK---F-------------------I--GEG 457 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~d----l~~~---~-------------------~--g~~ 457 (665)
|+.++..++|.||+|+|||+|++.++... +...+.+...+ +... + + ...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67788899999999999999999998754 33333332211 0000 0 0 122
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 458 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 458 ~~~~~~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
....+.++..+....|.++++|-+..+.... ...+....+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~------~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV------SNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC------ChHHHHHHHHHHHHHHH
Confidence 3344556666667789999999665553321 11224555556665543
No 303
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.67 E-value=0.087 Score=58.43 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=32.1
Q ss_pred EEEEEeCCCC--CCCccccCCCCeeEEEEeCCCCHHHHHHHHHH
Q psy15936 549 KVIMATNRID--ILDPALLRPGRIDRKIEFPPPNEEARLDILRI 590 (665)
Q Consensus 549 ~VIatTn~~~--~Ld~aLlr~gRfd~~I~~~~P~~eer~~Il~~ 590 (665)
.+|.+|.+|. .++..++. -|..+|.|...+..+...|+..
T Consensus 334 ~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 334 HLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred EEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 4788888876 57777776 7888899999999999888763
No 304
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.67 E-value=0.032 Score=60.38 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
..+.-++|+|+||+||||+|+.++..++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 345678899999999999999999998765544
No 305
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.63 E-value=0.024 Score=56.06 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=29.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
..++..+.|.|++|+||||+++.++..++.+++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 34566789999999999999999999999776553
No 306
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.62 E-value=0.029 Score=56.17 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCc--------eEEEechhhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECT--------FIRVSGSELV 450 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~--------lirv~~~dl~ 450 (665)
.+..|.|.|++||||||+|+.++..++.+ +..++..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 45568899999999999999999998876 3345555543
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.59 E-value=0.02 Score=54.26 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhC---CceEEEech
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGS 447 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~ 447 (665)
.++..++|.|++|+||||+++.++..++ ..+..++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 3566788999999999999999999874 334445443
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.59 E-value=0.022 Score=54.95 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
.++..+.|.||+|+||||+++.++..+++.+..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 35567889999999999999999999874333333
No 309
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.57 E-value=0.021 Score=59.25 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=29.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
+..++|.||+|+|||+||..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999877766544
No 310
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.56 E-value=0.018 Score=55.54 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=22.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++..+.|.||+|+|||||++.++..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998764
No 311
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.52 E-value=0.021 Score=55.52 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=28.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+..+.|.|++|||||++++.++..++.+++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 346889999999999999999999997766543
No 312
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.50 E-value=0.027 Score=54.14 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=23.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCce
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTF 441 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~l 441 (665)
+.++|.||+|+|||+|++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3589999999999999999988764333
No 313
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.49 E-value=0.022 Score=55.22 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45777899999999999999999998874
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.46 E-value=0.023 Score=53.89 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=24.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCCceEEEechh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~d 448 (665)
.+.|.||+|+||||+++.++...+.. +.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcccc
Confidence 57899999999999999999865432 3444433
No 315
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.45 E-value=0.1 Score=58.49 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 465 FVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 465 f~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
+..+....|.++++|| +.++.+...+..+.+++..+.
T Consensus 149 iA~aL~~~p~illlDE----------Pts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 149 VAASLLREADVYIFDQ----------PSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp HHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHh
Confidence 3445567899999999 667788888888888888774
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.45 E-value=0.021 Score=55.99 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567789999999999999999999877
No 317
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.43 E-value=0.032 Score=54.06 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
...+++.+.|.||+|+|||+|++.++....
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334567789999999999999999998765
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.39 E-value=0.021 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 319
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.32 E-value=0.028 Score=58.40 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=28.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
+.-++|.||+|+|||+||..+|..++..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 3457899999999999999999999876665543
No 320
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.13 Score=58.41 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCeEEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhh
Q psy15936 463 ELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510 (665)
Q Consensus 463 ~if~~a~~~~p~VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~ 510 (665)
-.+..+....|.++++|| +.++.|...+..+.+++..+
T Consensus 476 v~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~ll~~l 513 (608)
T 3j16_B 476 VAIVLALGIPADIYLIDE----------PSAYLDSEQRIICSKVIRRF 513 (608)
T ss_dssp HHHHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHH
Confidence 344445567899999999 67788888888888777665
No 321
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.21 E-value=0.14 Score=60.04 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.++..+.|+||+|+||||+.+.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34567899999999999999999863
No 322
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.20 E-value=0.023 Score=58.26 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=26.8
Q ss_pred hCCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 408 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.|+.++..++|.||||+|||+|++.++..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367888999999999999999999998764
No 323
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.16 E-value=0.16 Score=54.33 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++ .+.|+||+|+|||+|.+++...+
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 4566 78899999999999999995544
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.13 E-value=0.045 Score=52.72 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
.++..+.|.|++|+||||+++.++..+ +..+...+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 455678899999999999999999876 445555443
No 325
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.10 E-value=0.026 Score=59.41 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=27.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEec
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~ 446 (665)
..++|.||+|+|||++|..+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999866655443
No 326
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.09 E-value=0.16 Score=63.00 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.++++..+.++||+|+||||+++.+....++
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3567888999999999999999999987654
No 327
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.08 E-value=0.031 Score=57.91 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=28.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
.++++..+.|+||+|+|||||++.++..+...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 57788899999999999999999999987433
No 328
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.04 E-value=0.03 Score=55.09 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.+++..+.|.||+|+|||||++.++....+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 456778999999999999999999987753
No 329
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.01 E-value=0.024 Score=63.09 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=46.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEechh-hhhhh-----------hccchHHHHHHHHHHHhcCCeEEE
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSE-LVQKF-----------IGEGSRMVRELFVMAREHAPSIIF 477 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~d-l~~~~-----------~g~~~~~~~~if~~a~~~~p~Vll 477 (665)
.+.++++.||+|+||||++++++..+.+ ..+.+.... +.... .+.........+..+.++.|++++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 5667999999999999999999988753 344443321 11000 011112344556666778999999
Q ss_pred EcCcc
Q psy15936 478 MDEID 482 (665)
Q Consensus 478 iDEID 482 (665)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99975
No 330
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.00 E-value=0.062 Score=58.43 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=43.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhhh----------hhh------h---cc-chHHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELV----------QKF------I---GE-GSRMVRELFVMA 468 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl~----------~~~------~---g~-~~~~~~~if~~a 468 (665)
++..+++.||+|+||||++.++|..+ +..+..+++..+. ... . +. ........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678899999999999999999765 4445444432110 000 0 01 111223444455
Q ss_pred HhcCCeEEEEcCccc
Q psy15936 469 REHAPSIIFMDEIDS 483 (665)
Q Consensus 469 ~~~~p~VlliDEID~ 483 (665)
..+.++++++|....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556789999998643
No 331
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.96 E-value=0.029 Score=57.44 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=24.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh-CCceEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT-ECTFIR 443 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l-~~~lir 443 (665)
..++|.|+||+||||+|+.++..+ +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 458899999999999999999864 544443
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.94 E-value=0.032 Score=55.56 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=25.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
+.++..+-|.||+|+||||+++.++..++..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3455668899999999999999999988643
No 333
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.86 E-value=0.028 Score=57.50 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=25.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
+..|.|+|++||||||+|+.++ .++.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568899999999999999999 577766543
No 334
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.86 E-value=0.031 Score=54.27 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
+.+++|.||+|+|||++|..++.... .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 46799999999999999999998865 4443
No 335
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.85 E-value=0.03 Score=63.32 Aligned_cols=25 Identities=44% Similarity=0.607 Sum_probs=22.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
...+++.||||||||+++.+++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998754
No 336
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.83 E-value=0.048 Score=59.73 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHhh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++|.|+||||||+++++++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 337
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.81 E-value=0.15 Score=56.32 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=30.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~ 445 (665)
|+.++.-++|.|+||+|||++|..+|..+ +.+++.++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 78888999999999999999999998754 44555544
No 338
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.79 E-value=0.024 Score=57.55 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.5
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
|+.++..++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999998643
No 339
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.61 E-value=0.17 Score=57.28 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++++..+.|.||+|+|||||++.++....
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 56788899999999999999999987653
No 340
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.51 E-value=0.12 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999999865
No 341
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.48 E-value=0.11 Score=59.16 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.++..+.|.||+|+|||||++.++..+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999999865
No 342
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.37 E-value=0.052 Score=55.52 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccee---e----eccCCcceEEEec----------cCCe
Q psy15936 262 QLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEV---V----KPMDKKKVLVKVH----------PEGK 324 (665)
Q Consensus 262 e~~~~~~~~~i~~l~~~~~el~e~v~~~~~~~e~~~~~~~~~~~~---v----~p~~~kt~l~ka~----------~~~~ 324 (665)
++-...+..++.|++..++.+.+.+..+.. +..++..|+..+.. + |||+|||.++++- ..+.
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~ 101 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH 101 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc
Confidence 334455566788899999999988877653 55666655544332 2 9999999998641 1235
Q ss_pred eeeecCCcccccCCCCCceEEecccchhhhhhcCCCCCcchhhhhhccCCCCCccccCCChHHHHHHHHHhh
Q psy15936 325 FVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIE 396 (665)
Q Consensus 325 f~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~eid~i~~~~~~~i~G~~~~~~~l~~~l~ 396 (665)
|+....+.+...+++...... ..++..+ .++++++|+++.+...+-++ ....+....+...+.
T Consensus 102 ~~~~~~~~l~~~~~g~~~~~~-----~~~~~~~---~~~vl~iDEid~l~~~~~~~-~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 102 LVSVTRDDLVGQYIGHTAPKT-----KEVLKRA---MGGVLFIDEAYYLYRPDNER-DYGQEAIEILLQVME 164 (309)
T ss_dssp EEEECGGGTCCSSTTCHHHHH-----HHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHH
T ss_pred EEEEcHHHhhhhcccccHHHH-----HHHHHhc---CCCEEEEEChhhhccCCCcc-cccHHHHHHHHHHHh
Confidence 666666667666665443221 3333333 46799999999986544221 123344455544443
No 343
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.37 E-value=0.23 Score=61.58 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++++..+-|+||+|+||||+++.+.+..+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 34566788999999999999999987654
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.35 E-value=0.039 Score=59.26 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=27.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCceEEEe
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~lirv~ 445 (665)
+..++|.||+|+|||+||..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345789999999999999999999987666543
No 345
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.31 E-value=0.027 Score=55.47 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=18.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHH-HhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVA-HHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia-~~l~ 438 (665)
+.++..+.|.||+|+||||+++.++ ..+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4566778999999999999999999 7653
No 346
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.22 E-value=0.2 Score=59.60 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=22.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
+.++..+.|.||+|+|||||++.++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667789999999999999999984
No 347
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.21 E-value=0.055 Score=53.53 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.+.-+.|.||+|+||||+++.++..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5667889999999999999999998863
No 348
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.19 E-value=0.051 Score=56.45 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
|+.++.-++|.|+||+|||++|..+|... +.+.+.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78899999999999999999999998654 34455543
No 349
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.19 E-value=0.32 Score=58.49 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred CceEEEeCCCCChHHHHHHHHH
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVA 434 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia 434 (665)
+..++|+||+|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5789999999999999999984
No 350
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.11 E-value=0.052 Score=52.56 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=27.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
..|.|.|++|||||++++.+|..+|.+|+-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368899999999999999999999999874
No 351
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.98 E-value=0.042 Score=55.64 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56777899999999999999999998664
No 352
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.92 E-value=0.2 Score=61.97 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++++..+.|.||+|+|||||++.++...+
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356788899999999999999999987664
No 353
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.87 E-value=0.099 Score=60.12 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHhcCCe--EEEEcCccccccCCcCCCCCCChHHHHHHHHHHHhhc
Q psy15936 466 VMAREHAPS--IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511 (665)
Q Consensus 466 ~~a~~~~p~--VlliDEID~l~~~~~~~~~~~~~~~~~~l~~Ll~~~d 511 (665)
..+....|. ++++|| +.++.|+..+..+.+++..+.
T Consensus 214 ArAL~~~p~~~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~ 251 (670)
T 3ux8_A 214 ATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIATLKSMR 251 (670)
T ss_dssp HHHHHTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHH
Confidence 344445666 999999 667788888888888887764
No 354
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.86 E-value=0.08 Score=60.17 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL 449 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl 449 (665)
.+..|+|+|.||+||||+|+.+++.+ +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45678999999999999999999998 888888865433
No 355
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.85 E-value=0.33 Score=59.99 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+-|.||+|+|||||++.++...
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4677789999999999999999998754
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.82 E-value=0.055 Score=56.24 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=25.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
..++..+.|.||+|+|||||++.++..+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456667889999999999999999997753
No 357
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.78 E-value=0.063 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3466788999999999999999999876
No 358
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.75 E-value=0.045 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677789999999999999999998755
No 359
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.73 E-value=0.061 Score=51.63 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999876
No 360
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.70 E-value=0.25 Score=50.70 Aligned_cols=70 Identities=26% Similarity=0.248 Sum_probs=42.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEechhh----h-------hh-----hh---ccch-HHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL----V-------QK-----FI---GEGS-RMVRELFVMA 468 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~~dl----~-------~~-----~~---g~~~-~~~~~if~~a 468 (665)
++..+.+.|++|+||||++.++|..+ +..+..+++.-. . .. ++ .... ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999865 344444443210 0 00 00 0111 2224455555
Q ss_pred HhcCCeEEEEcCc
Q psy15936 469 REHAPSIIFMDEI 481 (665)
Q Consensus 469 ~~~~p~VlliDEI 481 (665)
....++++++|+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5567889999984
No 361
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.68 E-value=0.04 Score=54.04 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45677899999999999999999988653
No 362
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.64 E-value=0.043 Score=54.33 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45778899999999999999999998653
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.57 E-value=0.069 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46678999999999999999999876
No 364
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.55 E-value=0.044 Score=55.28 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=24.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567789999999999999999998755
No 365
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.52 E-value=0.17 Score=56.05 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
++..|+++|++|+||||++.++|..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45678999999999999999999765 555555544
No 366
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.49 E-value=0.19 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHH
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAV 433 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~ai 433 (665)
+.++..+.|.||+|+|||||++.+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHH
Confidence 457788999999999999999654
No 367
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.44 E-value=0.33 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+..+.|+||+|+||||+.+.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 567899999999999999999863
No 368
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.43 E-value=0.047 Score=54.47 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.++..+.|.||+|+|||||++.++..+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45677899999999999999999997653
No 369
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.38 E-value=0.062 Score=53.34 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv 444 (665)
..+-|.||||+||||+|+.++..++.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3467899999999999999999998777654
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.35 E-value=0.07 Score=50.07 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
..+|+||+|+|||+++.++...++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999988764
No 371
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.33 E-value=0.068 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+.++..+.|.||+|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567788999999999999999999986
No 372
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.32 E-value=0.21 Score=54.29 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEech
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSGS 447 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~~ 447 (665)
++..+++.|++|+||||++.++|..+ |..+..+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 46678899999999999999999765 5556655544
No 373
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.28 E-value=0.058 Score=54.69 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5677889999999999999999998754
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.23 E-value=0.034 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
-+.|.|++|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4778999999999999999998853
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.15 E-value=0.095 Score=53.86 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=24.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.++..+.|.||+|+||||+++.++..++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45667889999999999999999988763
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.10 E-value=0.054 Score=55.37 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4577789999999999999999999765
No 377
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.10 E-value=0.21 Score=51.43 Aligned_cols=34 Identities=32% Similarity=0.311 Sum_probs=26.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
+..+++.|++|+||||++.++|..+ +..+..+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5678889999999999999999766 455555544
No 378
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.02 E-value=0.065 Score=53.74 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+.++..+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457778999999999999999999985
No 379
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.99 E-value=0.042 Score=53.67 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.++..+.|.||+|+|||||++.++..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35677889999999999999999875
No 380
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.99 E-value=0.087 Score=55.83 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3466789999999999999999999876
No 381
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.81 E-value=0.17 Score=57.78 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhhcCCCchhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 384 LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 384 ~~~~~~~l~~~l~l~l~~~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++++.+..++. ...-.|+.||||||||+.+..+...
T Consensus 191 N~~Q~~AV~~al~---------------~~~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 191 DTSQKEAVLFALS---------------QKELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CHHHHHHHHHHHH---------------CSSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4566666655552 1235789999999999877666543
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.78 E-value=0.11 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
....+.+.|++|+||||++..++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578899999999999999998765
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.73 E-value=0.089 Score=54.41 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++..+.|.||+|+||||+++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556788999999999999999999876
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.71 E-value=0.1 Score=54.44 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+..+.|.||+||||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999999998875
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.63 E-value=0.082 Score=54.30 Aligned_cols=37 Identities=11% Similarity=0.262 Sum_probs=25.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSEL 449 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl 449 (665)
+.-|.|.||+|+||||+|+.++..++ ..+..++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 34588999999999999999999876 33444555444
No 386
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.58 E-value=0.1 Score=49.77 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=26.4
Q ss_pred EEEeCCCCChHHHHHHHHHHhhCCceEEEech
Q psy15936 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447 (665)
Q Consensus 416 vLL~GppGtGKT~LA~aia~~l~~~lirv~~~ 447 (665)
++++|++|+|||++|..++.. +.+.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999988 7777776553
No 387
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.54 E-value=0.33 Score=42.32 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=44.6
Q ss_pred CceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCC-CCCCceeeccc
Q psy15936 177 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIND-VTPNCRVALRN 225 (665)
Q Consensus 177 pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~-l~pG~~Val~~ 225 (665)
+..+|.|++.++++.+-|...+|.+.++.+++.+++.- +++||.|.|..
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred CeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 56799999999999999999999999999999999744 99999999964
No 388
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.53 E-value=0.11 Score=54.99 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
...+.|.||+|+|||||++.++..+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999988764
No 389
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.45 E-value=0.085 Score=59.18 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC----ceEEEechhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSEL 449 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~----~lirv~~~dl 449 (665)
+.++..+.|.|++||||||++++++..+++ .+..++..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 346677899999999999999999998852 3545666554
No 390
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.44 E-value=0.11 Score=57.26 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..++|.||+|+||||+++.++..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4566778999999999999999999875
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.34 E-value=0.18 Score=56.13 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=28.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC---CceEEEechhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSEL 449 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~---~~lirv~~~dl 449 (665)
.+..|+++|.||+||||+|+.++..++ .....++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 345688999999999999999999884 33334444443
No 392
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.24 E-value=0.11 Score=51.23 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=27.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
..|.+.|++|||||++++.+|..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467889999999999999999999988855
No 393
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.24 E-value=0.1 Score=54.75 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEE
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRV 444 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv 444 (665)
|+.++.-++|.|+||+|||++|.++|..+ +.+++.+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 78889999999999999999999998764 4555444
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.23 E-value=0.087 Score=55.85 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=46.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC--ceEEEech-hhh-----h--hhhc-c-------chHHHHHHHHHHHhc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGS-ELV-----Q--KFIG-E-------GSRMVRELFVMAREH 471 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~--~lirv~~~-dl~-----~--~~~g-~-------~~~~~~~if~~a~~~ 471 (665)
+.++..++|.||+|+||||++++++..+++ ..+.++.. ++. . .+.. + .....+..+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 457788999999999999999999987753 23443321 110 0 0111 0 111245566666677
Q ss_pred CCeEEEEcCcc
Q psy15936 472 APSIIFMDEID 482 (665)
Q Consensus 472 ~p~VlliDEID 482 (665)
.|..++++|+.
T Consensus 252 ~pd~~l~~e~r 262 (361)
T 2gza_A 252 KPTRILLAELR 262 (361)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEEcCch
Confidence 88999999965
No 395
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.22 E-value=0.095 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+.+++|.|+||+|||++|..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3568999999999999999998773
No 396
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.16 E-value=0.11 Score=53.55 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh----CCceEEEec
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT----ECTFIRVSG 446 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l----~~~lirv~~ 446 (665)
++..+++.||+|+||||++.++|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56789999999999999999998755 335555544
No 397
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=90.98 E-value=0.28 Score=40.06 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=42.0
Q ss_pred eeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCC--CCCCceeeccc
Q psy15936 179 YVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIND--VTPNCRVALRN 225 (665)
Q Consensus 179 ~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~--l~pG~~Val~~ 225 (665)
+.|.|++.++++.+.|....|..+..+++|.++++. +-|||+|.+..
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~ 64 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVEL 64 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEE
Confidence 479999999999999999988899999999998754 88999998754
No 398
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.92 E-value=0.12 Score=51.09 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+..+.+.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999984
No 399
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.85 E-value=0.15 Score=57.44 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC----CceEEEechh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE----CTFIRVSGSE 448 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~----~~lirv~~~d 448 (665)
.+..|+|.|+||+||||+|+.+++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345688999999999999999999886 6677776544
No 400
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.75 E-value=0.1 Score=52.87 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=24.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+. +..+.|.||+|+|||||++.++..+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 56 7778999999999999999999865
No 401
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=90.74 E-value=0.46 Score=45.23 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
..+++.+|+|+|||.++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999998877654
No 402
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.70 E-value=0.077 Score=54.55 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5677789999999999999999998765
No 403
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.52 E-value=0.079 Score=53.21 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.++..|.|.|++|+||||+++.+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3556788999999999999999999984
No 404
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.51 E-value=0.17 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..+.+.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 405
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.48 E-value=0.13 Score=56.19 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
|+.++.-+++.|+||+|||++|.++|... +.+++.++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 78889999999999999999999998754 45555543
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.32 E-value=0.54 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
....+.|+|+||+|||+++.+++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999998765
No 407
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.27 E-value=0.17 Score=52.79 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=28.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
.++..++++||+|+||||++.++|..+ +..++.+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456778999999999999999999865 445555544
No 408
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=90.21 E-value=0.58 Score=37.27 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=41.3
Q ss_pred eeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccC--CCCCCceeeccc
Q psy15936 179 YVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIN--DVTPNCRVALRN 225 (665)
Q Consensus 179 ~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~--~l~pG~~Val~~ 225 (665)
+.|.|++.++++.+.|....|..+.+++++.++.+ .+.+||+|.+..
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~ 56 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEL 56 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEE
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEE
Confidence 47999999999999999888889999999999975 477999999863
No 409
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.84 E-value=0.15 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+.|.||+|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998663
No 410
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=89.77 E-value=0.58 Score=42.51 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=45.1
Q ss_pred cCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCC-CCCCceeeccc
Q psy15936 176 QGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIND-VTPNCRVALRN 225 (665)
Q Consensus 176 ~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~-l~pG~~Val~~ 225 (665)
...++|.|++.++++.+-|....|-+.++.+++.+++.- +++||.|.|..
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 356899999999999999999999999999999999844 99999999964
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.76 E-value=0.16 Score=55.77 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.4
Q ss_pred CCCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 409 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 409 g~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35678889999999999999999998854
No 412
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.72 E-value=0.12 Score=48.77 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
..+.|.|++|+|||||++.++..+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35789999999999999999988754
No 413
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=89.61 E-value=0.54 Score=41.39 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=49.3
Q ss_pred CceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCccc-CCCCCCceeecccc-----ceEEEeecC
Q psy15936 177 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDI-NDVTPNCRVALRNE-----SYTLHKILP 235 (665)
Q Consensus 177 pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~-~~l~pG~~Val~~~-----~~~i~~iLp 235 (665)
..+.|.|++.++++.+.|....|..+.+++++.++. ..+.+||+|.+... ...|+.++|
T Consensus 32 ~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 32 GQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYT 96 (117)
T ss_dssp TEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECC
T ss_pred CEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEec
Confidence 467899999999999999998999999999999885 34889999999543 456777775
No 414
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.43 E-value=0.26 Score=53.63 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=27.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
+.++..+.|.||+|||||||++.++....+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 5677789999999999999999999988654
No 415
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.35 E-value=0.21 Score=48.74 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+.-|.|.|++|+||||+++.++..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355688899999999999999999874
No 416
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.30 E-value=0.19 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+.+.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 417
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.16 E-value=0.18 Score=55.85 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.+..++|.|.+||||||+++++|..|+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4457889999999999999999999974
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.14 E-value=0.2 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=20.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
++.-|.|.|++|+||||+++.+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999998873
No 419
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.11 E-value=0.24 Score=48.60 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.8
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhCCc
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTECT 440 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~~~ 440 (665)
++.-+.+.|++|+||||+++.+++.++..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46678899999999999999999999863
No 420
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.01 E-value=0.24 Score=48.62 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=25.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCCceEE
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~~lir 443 (665)
.++..+.|.|++|+||||+++.++.. +..+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 45566889999999999999999987 443433
No 421
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.91 E-value=0.18 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHhh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~l 437 (665)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 422
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=88.81 E-value=0.22 Score=42.71 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=44.3
Q ss_pred CceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCC-CCCCceeeccc
Q psy15936 177 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIND-VTPNCRVALRN 225 (665)
Q Consensus 177 pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~-l~pG~~Val~~ 225 (665)
...+|.|++.++++.+-|...+|.+.++.+++.+++.- +++||.|.|..
T Consensus 20 ~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~ 69 (102)
T 1jt8_A 20 NEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKP 69 (102)
T ss_dssp CCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECC
T ss_pred CEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEe
Confidence 45799999999999999999999999999999998743 99999999964
No 423
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.81 E-value=0.42 Score=46.61 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=33.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCCceEEEechhhhhhhhccchHHHHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVM 467 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~~lirv~~~dl~~~~~g~~~~~~~~if~~ 467 (665)
-.|-|+|..||||||+++.++. +|.+++..+ .+......++...+..++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD--~ia~~l~~~~~~~~~~i~~~ 60 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD--LIAHRITAPAGLAMPAIEQT 60 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH--HHHHHHTSTTCTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc--HHHHHHhcCCcHHHHHHHHH
Confidence 3588999999999999999998 888776543 33333333333334444444
No 424
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.76 E-value=0.26 Score=51.97 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=27.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCCce
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 441 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~~l 441 (665)
+.++..+.|.||+|+|||||++.++..+.+..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 45777899999999999999999999887553
No 425
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.59 E-value=0.22 Score=45.09 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.+++.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 426
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.46 E-value=0.25 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 427
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.41 E-value=0.29 Score=46.89 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
....+++.|++|+|||+|+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 428
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.40 E-value=0.38 Score=46.31 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=23.7
Q ss_pred CceEEEeCCCCChHH-HHHHHHHHhh--CCceEEEe
Q psy15936 413 PKGVLLYGPPGTGKT-LLARAVAHHT--ECTFIRVS 445 (665)
Q Consensus 413 ~~~vLL~GppGtGKT-~LA~aia~~l--~~~lirv~ 445 (665)
+.-.+++||.|+||| .|.+++.+.. +..++.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 456788999999999 7888876643 44555443
No 429
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.37 E-value=0.84 Score=47.70 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..+..+.+.|+||+||||++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456678899999999999999998754
No 430
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.27 E-value=0.27 Score=55.03 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4677889999999999999999999755
No 431
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.17 E-value=0.32 Score=45.46 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.....+++.|++|+|||+|+..+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 432
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.14 E-value=0.29 Score=51.26 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||||+|||||++.++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4566778899999999999999998765
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.12 E-value=0.31 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l 437 (665)
.-.+|+||+|+|||++..|+...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998765
No 434
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.07 E-value=0.26 Score=48.98 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+.-+.|.|++|+||||+++.++..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998774
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.06 E-value=0.31 Score=48.05 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
..+.-+.|.|++|+||||+++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34566888999999999999999987754
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.00 E-value=0.27 Score=46.51 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
...-.|++.|++|+|||+|+..+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34457999999999999999999753
No 437
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.92 E-value=0.28 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998763
No 438
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.72 E-value=0.25 Score=53.48 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCCCce--EEEeCCCCChHHHHHHHHHHh
Q psy15936 409 GIAQPKG--VLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 409 g~~~~~~--vLL~GppGtGKT~LA~aia~~ 436 (665)
.+.++.. +.|.||+|+|||||++.++..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3556666 899999999999999999875
No 439
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.71 E-value=0.28 Score=53.27 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
...+-.++.|+||||||++...++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 44556789999999999999988764
No 440
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.70 E-value=0.27 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+.+.|++|+|||+|...++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999863
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.59 E-value=0.23 Score=46.42 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.3
Q ss_pred eEEEeCCCCChHHHHHHHHHH
Q psy15936 415 GVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~ 435 (665)
.+++.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999976
No 442
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.54 E-value=0.22 Score=54.08 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.0
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
++..++++|++|+||||++.++|..+ +..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34679999999999999999999865 344554443
No 443
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.53 E-value=0.35 Score=44.33 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.2
Q ss_pred CCceEEEeCCCCChHHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
....|++.|++|+|||+|+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999975
No 444
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.49 E-value=0.91 Score=52.98 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=32.3
Q ss_pred CccccCCChHHHHHHHHHhhcCCCc--hhHHHhhCCCCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 377 TYEMVGGLDNQIKEIKEVIELPVKH--PELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 377 ~~~~i~G~~~~~~~l~~~l~l~l~~--~d~f~~~g~~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.|++.+-.....+.+...-.+|... ..+... +..+..+++.||+|+|||+++..++.
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4555543444444444444444321 122221 22456799999999999997776644
No 445
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.46 E-value=0.17 Score=48.25 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.9
Q ss_pred hCCCCCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 408 LGIAQPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 408 ~g~~~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+...++..+.|.|++|+|||+|++.++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34566677999999999999999988654
No 446
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.45 E-value=0.27 Score=53.94 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
.+..|+++|.||+|||++++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999875
No 447
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.44 E-value=0.31 Score=44.15 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 448
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.38 E-value=0.33 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.+++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 449
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.28 E-value=0.27 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.28 E-value=0.32 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l 437 (665)
-.+++.|++|+|||+|+..+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 451
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.22 E-value=0.38 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.1
Q ss_pred CCceEEEeCCCCChHHHHHHHHHH
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
+...+++.|++|+|||+|+..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999999975
No 452
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.13 E-value=0.31 Score=44.47 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=20.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999998753
No 453
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.07 E-value=0.35 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.+++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999753
No 454
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.99 E-value=0.34 Score=44.00 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.+++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 455
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=86.96 E-value=0.33 Score=55.24 Aligned_cols=24 Identities=42% Similarity=0.689 Sum_probs=19.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l 437 (665)
..+++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999888776543
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.95 E-value=0.41 Score=52.60 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.2
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.+ ..+.|.||+|+|||||+++++..+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 455 7788999999999999999998764
No 457
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.85 E-value=0.73 Score=49.85 Aligned_cols=35 Identities=26% Similarity=0.181 Sum_probs=26.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEec
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSG 446 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~~ 446 (665)
++..+++.|++|+||||++.++|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 56678889999999999999999866 344444443
No 458
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.83 E-value=0.32 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~ 435 (665)
-.|++.|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 459
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.72 E-value=0.38 Score=44.16 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.-.|++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999764
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.71 E-value=0.36 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
+.-|.|.|++|+||||.++.++..+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688899999999999999998773
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.68 E-value=0.31 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
..+.+.|++|+|||+|+..++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 462
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.61 E-value=0.36 Score=43.56 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++.|++|+|||+|+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 463
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.56 E-value=0.37 Score=43.61 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEeCCCCChHHHHHHHHHH
Q psy15936 415 GVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~ 435 (665)
.+++.|++|+|||+|+..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 464
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.56 E-value=0.58 Score=45.12 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
....+++.|++|+|||+|+..++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34568889999999999999999875
No 465
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.54 E-value=0.37 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=20.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
...+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988876544
No 466
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.50 E-value=0.2 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.1
Q ss_pred EEeCCCCChHHHHHHHHHHhhCC
Q psy15936 417 LLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 417 LL~GppGtGKT~LA~aia~~l~~ 439 (665)
.|.||+|+||||++++++..+.+
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccccc
Confidence 46799999999999999997753
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.49 E-value=0.67 Score=45.85 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh--CCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT--ECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l--~~~lirv~ 445 (665)
....+++.|.+|+||||++.+++..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568889999999999999999765 44444443
No 468
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.38 E-value=0.3 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
++..+.|.|++|+|||+|...++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999864
No 469
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.37 E-value=0.38 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 470
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.33 E-value=0.36 Score=43.82 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=18.8
Q ss_pred eEEEeCCCCChHHHHHHHHHH
Q psy15936 415 GVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~ 435 (665)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 471
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.30 E-value=0.32 Score=44.05 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHh
Q psy15936 415 GVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~~ 436 (665)
.+++.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.29 E-value=0.48 Score=50.40 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhh---CCceEEEe
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 445 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l---~~~lirv~ 445 (665)
...++++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 55689999999999999999998653 44554444
No 473
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.25 E-value=0.65 Score=49.59 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=24.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..++|.||+|+|||+|+..+++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4577889999999999999999998864
No 474
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.20 E-value=0.38 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 475
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.17 E-value=0.38 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~ 435 (665)
-.+++.|++|+|||+|+..+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 476
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=86.07 E-value=18 Score=32.04 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCC
Q psy15936 136 EELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDV 215 (665)
Q Consensus 136 ~~l~~~~~~l~~~~~~~~~~~~~l~~e~~~l~~e~~~l~~~pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l 215 (665)
.++..+.++++..+..+..++..++..+..++.-++.+..++- -++..+.|-.+.+ -| | +..+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--------~~~~~~lvplg~~-~y-v-------~a~i 66 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--------KDGSETLVPVGAG-SF-I-------KAEL 66 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CTTCEEEEEEETT-EE-E-------EEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------CCCCeEEEEcCCC-cE-E-------EEEE
Confidence 3455666777777777777777777777777777777776663 0233344443322 12 1 1223
Q ss_pred CCCceeeccccceEEEeecCCCccchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15936 216 TPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR 290 (665)
Q Consensus 216 ~pG~~Val~~~~~~i~~iLp~~~dp~v~~m~~e~~~~~~~~~i~~Le~~~~~~~~~i~~l~~~~~el~e~v~~~~ 290 (665)
.+-++|.|+--+...++ +..++..++...++..++..++.+..++..+.++...+.+.+....
T Consensus 67 ~~~~~V~v~lG~g~~vE------------~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 67 KDTSEVIMSVGAGVAIK------------KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp CSTTEEEEEEETTEEEE------------EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCEEEE------------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455655532211111 1122334556667777777777777777777777766666665543
No 477
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.06 E-value=0.41 Score=50.60 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=42.5
Q ss_pred CceeEEEEEEeCCCeEEEEEeCCCeEEEEcCCCcccCCCCCCceeeccccc---------eEEEeecCCC
Q psy15936 177 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNES---------YTLHKILPNK 237 (665)
Q Consensus 177 pl~vg~v~eil~~~~~iVk~~~~~~~vv~v~~~v~~~~l~pG~~Val~~~~---------~~i~~iLp~~ 237 (665)
+...|.|+...+. .+.|.+..|..|.++..+.++ .+-.||+|.+.... ..|.+++|..
T Consensus 46 ~~~~g~Vi~~~~~-~~~v~~~~g~~~~~~~r~~~~--~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R~ 112 (358)
T 2rcn_A 46 EPAEGIVISRFGM-HADVESADGEVHRCNIRRTIR--SLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERT 112 (358)
T ss_dssp CCEEEEEEEEETT-EEEEEETTSCEEEEEECTTCC--CCCBTCEEEEECBC-------CCEEEEEECCCS
T ss_pred CcceEEEEEEECC-EEEEEeCCCcEEEEEecCCCC--CCCCCcEEEEEeCCCccccccccceEeEEeCCc
Confidence 3458999997775 566766666667777777664 48899999996421 6799999854
No 478
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.06 E-value=0.46 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+.+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 578999999999999999999774
No 479
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.91 E-value=0.4 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.86 E-value=0.46 Score=45.78 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
.-.+|+||+|+|||++..|+...+..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999887754
No 481
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.82 E-value=0.42 Score=44.21 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.82 E-value=0.45 Score=48.90 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=41.1
Q ss_pred hcCceeEEEEEEeCCCeE--EEEEeCCCeEEEEcCCCcccC-CCCCCceeeccc---cceEEEeecCC
Q psy15936 175 EQGSYVGEVVKPMDKKKV--LVKVHPEGKFVVDIDKNIDIN-DVTPNCRVALRN---ESYTLHKILPN 236 (665)
Q Consensus 175 ~~pl~vg~v~eil~~~~~--iVk~~~~~~~vv~v~~~v~~~-~l~pG~~Val~~---~~~~i~~iLp~ 236 (665)
...+..|.|+...+.. + .|. ..|..+-+++.+..+.. ..-.||+|.+.. ....|.++.|+
T Consensus 3 ~~~~~~g~v~~~~~~~-~~~~v~-~~~~~~~~~~~~~~~~~~~~~vGD~V~~~~~~~~~g~I~~i~er 68 (302)
T 2yv5_A 3 KKELKRGLVVDREAQM-IGVYLF-EDGKTYRGIPRGKVLKKTKIYAGDYVWGEVVDPNTFAIEEVEER 68 (302)
T ss_dssp SCCCEEEEEEEEETTE-EEEEET-TTCCEEEEEECSSSTTSSCCCBTCEEEEEEEETTEEEEEEECCC
T ss_pred CCCceeEEEEEeeCCe-EEEEEe-cCCEEEEEEEcCCcccCCCCcCceEEEEEEccCCeEEEEeeCCh
Confidence 3456789999977754 5 454 44557888888877642 277999999953 24567777763
No 483
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.75 E-value=0.47 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
+.-.|++.|++|+|||+|+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999999864
No 484
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.73 E-value=0.42 Score=43.66 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.+++.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 485
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.61 E-value=0.41 Score=46.04 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHhhC
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHHTE 438 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~l~ 438 (665)
....+++.|++|+|||+++.+++..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345788999999999999999998764
No 486
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=85.60 E-value=0.37 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
+..+.|.||+|+|||||+++++....+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 456889999999999999999876543
No 487
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.54 E-value=0.33 Score=43.92 Aligned_cols=21 Identities=52% Similarity=0.809 Sum_probs=18.8
Q ss_pred eEEEeCCCCChHHHHHHHHHH
Q psy15936 415 GVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 415 ~vLL~GppGtGKT~LA~aia~ 435 (665)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 488999999999999999854
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.45 E-value=0.44 Score=43.88 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
..|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999863
No 489
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.33 E-value=0.41 Score=43.85 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~ 435 (665)
-.|++.|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 490
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.33 E-value=0.44 Score=44.59 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 491
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.29 E-value=0.46 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.+++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999763
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.23 E-value=0.43 Score=54.15 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhh
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHT 437 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l 437 (665)
+.++..+.|.||+|+|||||++.++..+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4577889999999999999999998754
No 493
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=85.19 E-value=0.59 Score=50.48 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHhhCC
Q psy15936 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439 (665)
Q Consensus 410 ~~~~~~vLL~GppGtGKT~LA~aia~~l~~ 439 (665)
+.++..+.|+||+|+|||++..+++..++.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 345667899999999999999999987654
No 494
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.19 E-value=0.4 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
..+++.|++|+|||+|+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 495
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.12 E-value=0.4 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~ 435 (665)
-.|++.|++|+|||+|+..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999985
No 496
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.06 E-value=0.54 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHh
Q psy15936 413 PKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 413 ~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 497
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.91 E-value=0.5 Score=44.16 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHh
Q psy15936 412 QPKGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 412 ~~~~vLL~GppGtGKT~LA~aia~~ 436 (665)
....+++.|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999754
No 498
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.87 E-value=0.49 Score=43.71 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 499
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.83 E-value=0.49 Score=43.40 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHh
Q psy15936 414 KGVLLYGPPGTGKTLLARAVAHH 436 (665)
Q Consensus 414 ~~vLL~GppGtGKT~LA~aia~~ 436 (665)
-.|++.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999763
No 500
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=84.75 E-value=0.52 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.3
Q ss_pred CCCceEEEeCCCCChHHHHHHHHHH
Q psy15936 411 AQPKGVLLYGPPGTGKTLLARAVAH 435 (665)
Q Consensus 411 ~~~~~vLL~GppGtGKT~LA~aia~ 435 (665)
.+.-.|++.|++|+|||+|+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4455799999999999999999864
Done!