Your job contains 1 sequence.
>psy15936
MSGEALPNIYLSQKLKLSEVIEPENLLEMLVYNGYLTAIPSQTKDVPLKRKMPGQNKNET
VVTTITFHNVTIPNREILTAFHKIIRKENKEKLQNANEGEMDVDEAYTYEVERQRTVDEA
IKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYV
GEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDV
DEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQG
SYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNK
VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG
PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDE
IDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQ
EDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG
INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI
KKLWK
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15936
(665 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0020369 - symbol:Rpt6 "Regulatory particle triple-... 1131 6.6e-175 2
UNIPROTKB|F1NU79 - symbol:PSMC5 "Uncharacterized protein"... 1083 5.5e-169 2
UNIPROTKB|P62194 - symbol:PSMC5 "26S protease regulatory ... 1081 8.9e-169 2
UNIPROTKB|P62195 - symbol:PSMC5 "26S protease regulatory ... 1081 8.9e-169 2
UNIPROTKB|P62197 - symbol:PSMC5 "26S protease regulatory ... 1081 8.9e-169 2
MGI|MGI:105047 - symbol:Psmc5 "protease (prosome, macropa... 1081 8.9e-169 2
RGD|708376 - symbol:Psmc5 "proteasome (prosome, macropain... 1081 8.9e-169 2
ZFIN|ZDB-GENE-030131-6547 - symbol:psmc5 "proteasome (pro... 1075 3.8e-168 2
UNIPROTKB|Q6AZU7 - symbol:Q6AZU7 "Putative uncharacterize... 1070 1.3e-167 2
UNIPROTKB|Q4RG45 - symbol:GSTENG00035021001 "Chromosome 2... 1069 1.7e-167 2
UNIPROTKB|Q6P380 - symbol:psmc5 "Putative uncharacterized... 1068 2.1e-167 2
UNIPROTKB|P46470 - symbol:psmc5 "26S protease regulatory ... 1054 6.4e-166 2
FB|FBgn0039788 - symbol:Rpt6R "Regulatory particle triple... 1023 3.3e-160 2
WB|WBGene00004506 - symbol:rpt-6 species:6239 "Caenorhabd... 987 3.1e-153 2
WB|WBGene00018991 - symbol:F56F11.4 species:6239 "Caenorh... 955 1.2e-147 2
TAIR|locus:2147670 - symbol:RPT6A "regulatory particle tr... 948 4.1e-147 2
TAIR|locus:2147685 - symbol:AT5G20000 species:3702 "Arabi... 948 4.1e-147 2
POMBASE|SPBC23G7.12c - symbol:rpt6 "19S proteasome regula... 956 1.8e-144 2
GENEDB_PFALCIPARUM|PFL2345c - symbol:PFL2345c "tat-bindin... 941 4.9e-142 2
UNIPROTKB|Q8I4U5 - symbol:PFL2345c "Tat-binding protein h... 941 4.9e-142 2
CGD|CAL0006022 - symbol:RPT6 species:5476 "Candida albica... 926 9.1e-141 2
SGD|S000003016 - symbol:RPT6 "ATPase of the 19S regulator... 897 7.2e-139 2
ASPGD|ASPL0000064945 - symbol:AN6988 species:162425 "Emer... 888 2.2e-137 2
UNIPROTKB|J3QQM1 - symbol:PSMC5 "26S protease regulatory ... 752 4.6e-101 2
UNIPROTKB|J3KRP2 - symbol:PSMC5 "26S protease regulatory ... 980 1.0e-98 1
UNIPROTKB|J3QSA9 - symbol:PSMC5 "26S protease regulatory ... 980 1.0e-98 1
DICTYBASE|DDB_G0292382 - symbol:psmC5 "HIV TAT binding-pr... 962 8.4e-97 1
UNIPROTKB|E2RM61 - symbol:PSMC5 "Uncharacterized protein"... 915 8.1e-92 1
UNIPROTKB|J3QLH6 - symbol:PSMC5 "26S protease regulatory ... 859 6.9e-86 1
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl... 503 2.5e-81 2
FB|FBgn0015282 - symbol:Rpt2 "Regulatory particle triple-... 507 8.2e-81 3
UNIPROTKB|F1NSP7 - symbol:PSMC1 "26S protease regulatory ... 525 2.0e-79 2
UNIPROTKB|F1NTZ4 - symbol:PSMC1 "26S protease regulatory ... 525 2.0e-79 2
UNIPROTKB|A4FUZ3 - symbol:PSMC1 "Proteasome (Prosome, mac... 525 3.2e-79 2
UNIPROTKB|F1PQ40 - symbol:PSMC1 "Uncharacterized protein"... 525 3.2e-79 2
UNIPROTKB|P62191 - symbol:PSMC1 "26S protease regulatory ... 525 3.2e-79 2
UNIPROTKB|F2Z5J1 - symbol:PSMC1 "Uncharacterized protein"... 525 3.2e-79 2
MGI|MGI:106054 - symbol:Psmc1 "protease (prosome, macropa... 525 3.2e-79 2
RGD|621097 - symbol:Psmc1 "proteasome (prosome, macropain... 525 3.2e-79 2
UNIPROTKB|B4DR63 - symbol:PSMC1 "cDNA FLJ58247, highly si... 520 1.1e-78 2
UNIPROTKB|Q90732 - symbol:PSMC1 "26S protease regulatory ... 518 2.8e-78 2
WB|WBGene00004502 - symbol:rpt-2 species:6239 "Caenorhabd... 513 2.8e-78 2
SGD|S000002165 - symbol:RPT2 "ATPase of the 19S regulator... 474 7.1e-78 3
ZFIN|ZDB-GENE-040625-69 - symbol:psmc1b "proteasome (pros... 512 9.5e-78 2
CGD|CAL0005689 - symbol:RPT1 species:5476 "Candida albica... 471 3.0e-77 3
CGD|CAL0005257 - symbol:RPT2 species:5476 "Candida albica... 480 3.9e-77 3
ZFIN|ZDB-GENE-030131-8730 - symbol:psmc1a "proteasome (pr... 508 5.2e-77 2
GENEDB_PFALCIPARUM|PF10_0081 - symbol:PF10_0081 "26S prot... 516 4.6e-76 2
UNIPROTKB|Q8IJW0 - symbol:PF10_0081 "26S proteasome regul... 516 4.6e-76 2
TAIR|locus:2024822 - symbol:RPT1A "regulatory particle tr... 483 5.9e-76 2
TAIR|locus:2119926 - symbol:RPT2a "regulatory particle AA... 484 7.5e-76 2
ZFIN|ZDB-GENE-030131-304 - symbol:psmc6 "proteasome (pros... 492 9.6e-76 2
TAIR|locus:2061639 - symbol:RPT2b "regulatory particle AA... 484 1.2e-75 2
TAIR|locus:2159996 - symbol:RPT4A "regulatory particle tr... 496 1.6e-75 2
GENEDB_PFALCIPARUM|PF13_0033 - symbol:PF13_0033 "26S prot... 475 3.2e-75 2
UNIPROTKB|Q8IEQ1 - symbol:PF13_0033 "26S proteasome regul... 475 3.2e-75 2
UNIPROTKB|Q5R8D7 - symbol:PSMC2 "26S protease regulatory ... 480 4.1e-75 2
UNIPROTKB|F1NCS8 - symbol:PSMC6 "Uncharacterized protein"... 498 5.2e-75 2
UNIPROTKB|Q5ZKX2 - symbol:PSMC6 "Uncharacterized protein"... 498 5.2e-75 2
FB|FBgn0028687 - symbol:Rpt1 "Regulatory particle triple-... 484 6.7e-75 2
UNIPROTKB|F1NFL8 - symbol:PSMC2 "Uncharacterized protein"... 480 1.1e-74 2
UNIPROTKB|P46472 - symbol:psmc2 "26S protease regulatory ... 480 1.1e-74 2
ZFIN|ZDB-GENE-040426-1327 - symbol:psmc2 "proteasome (pro... 480 1.1e-74 2
UNIPROTKB|I3LJ30 - symbol:I3LJ30 "Uncharacterized protein... 480 1.1e-74 2
UNIPROTKB|E1C4V5 - symbol:PSMC2 "Uncharacterized protein"... 480 1.1e-74 2
MGI|MGI:109555 - symbol:Psmc2 "proteasome (prosome, macro... 480 1.1e-74 2
UNIPROTKB|Q5E9F9 - symbol:PSMC2 "26S protease regulatory ... 480 1.1e-74 2
UNIPROTKB|F1PPH7 - symbol:PSMC2 "Uncharacterized protein"... 480 1.1e-74 2
UNIPROTKB|P35998 - symbol:PSMC2 "26S protease regulatory ... 480 1.1e-74 2
UNIPROTKB|F1SB53 - symbol:PSMC2 "Uncharacterized protein"... 480 1.1e-74 2
UNIPROTKB|Q4R4R0 - symbol:PSMC2 "26S protease regulatory ... 480 1.1e-74 2
DICTYBASE|DDB_G0270784 - symbol:psmC1 "TAT binding protei... 477 1.1e-74 2
UNIPROTKB|F1MLV1 - symbol:PSMC6 "26S protease regulatory ... 493 1.8e-74 2
UNIPROTKB|J9P1N0 - symbol:PSMC6 "Uncharacterized protein"... 493 1.8e-74 2
UNIPROTKB|P62333 - symbol:PSMC6 "26S protease regulatory ... 493 1.8e-74 2
UNIPROTKB|F1SFE6 - symbol:PSMC6 "Uncharacterized protein"... 493 1.8e-74 2
UNIPROTKB|P62335 - symbol:PSMC6 "26S protease regulatory ... 493 1.8e-74 2
MGI|MGI:1914339 - symbol:Psmc6 "proteasome (prosome, macr... 493 1.8e-74 2
RGD|1308825 - symbol:Psmc6 "proteasome (prosome, macropai... 493 1.8e-74 2
RGD|2318218 - symbol:LOC100365869 "proteasome (prosome, m... 493 1.8e-74 2
UNIPROTKB|B7Z5E2 - symbol:PSMC2 "cDNA FLJ52353, highly si... 475 3.7e-74 2
UNIPROTKB|Q2KIW6 - symbol:PSMC6 "26S protease regulatory ... 493 4.7e-74 2
TAIR|locus:2028200 - symbol:AT1G45000 species:3702 "Arabi... 486 4.7e-74 2
WB|WBGene00004501 - symbol:rpt-1 species:6239 "Caenorhabd... 482 5.9e-74 2
UNIPROTKB|Q18787 - symbol:rpt-1 "26S protease regulatory ... 482 5.9e-74 2
RGD|3428 - symbol:Psmc2 "proteasome (prosome, macropain) ... 473 5.9e-74 2
UNIPROTKB|Q63347 - symbol:Psmc2 "26S protease regulatory ... 473 5.9e-74 2
POMBASE|SPBC4.07c - symbol:rpt2 "19S proteasome regulator... 485 1.6e-73 2
UNIPROTKB|J9NWA6 - symbol:LOC100687152 "Uncharacterized p... 438 1.8e-73 3
WB|WBGene00004504 - symbol:rpt-4 species:6239 "Caenorhabd... 477 2.0e-73 2
UNIPROTKB|O17071 - symbol:rpt-4 "Probable 26S protease re... 477 2.0e-73 2
SGD|S000001628 - symbol:RPT1 "ATPase of the 19S regulator... 468 2.0e-73 2
UNIPROTKB|F1SID4 - symbol:PSMC3 "Uncharacterized protein"... 437 2.9e-73 3
MGI|MGI:1098754 - symbol:Psmc3 "proteasome (prosome, macr... 437 2.9e-73 3
RGD|61905 - symbol:Psmc3 "proteasome (prosome, macropain)... 437 2.9e-73 3
UNIPROTKB|Q6P6U2 - symbol:Psmc3 "26S protease regulatory ... 437 2.9e-73 3
UNIPROTKB|F1PBK7 - symbol:PSMC3 "Uncharacterized protein"... 437 3.7e-73 3
UNIPROTKB|P17980 - symbol:PSMC3 "26S protease regulatory ... 437 3.7e-73 3
ASPGD|ASPL0000032311 - symbol:AN5747 species:162425 "Emer... 482 4.1e-73 2
ZFIN|ZDB-GENE-030131-666 - symbol:psmc3 "proteasome (pros... 437 9.8e-73 3
WARNING: Descriptions of 572 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0020369 [details] [associations]
symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
"endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
"proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
"proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
Uniprot:O18413
Length = 405
Score = 1131 (403.2 bits), Expect = 6.6e-175, Sum P(2) = 6.6e-175
Identities = 227/285 (79%), Positives = 234/285 (82%)
Query: 236 NKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 295
N+M+++ A EGF+ YY+ KIEELQL+VAEK QNLRRLQAQRNELNAKVRMLR
Sbjct: 5 NRMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQL 64
Query: 296 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 355
GSYVGEVVKPMDKKKVLVKVHPEGKF TPNCRVALRNESYTLHK
Sbjct: 65 LQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHK 124
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
ILPNKVDPLVSLMMVEKVPDSTYEMVGGLD QIKEIKEVIELPVKHPELFDALGIAQPKG
Sbjct: 125 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 184
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI
Sbjct: 185 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 244
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 245 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 289
Score = 590 (212.7 bits), Expect = 6.6e-175, Sum P(2) = 6.6e-175
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 289 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 348
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 349 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 405
Score = 437 (158.9 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
Identities = 88/129 (68%), Positives = 95/129 (73%)
Query: 111 VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXX 170
V + ++ A EGF+ YY+ KIEELQL+VAEK QNLRRLQAQRNELNAKVRMLR
Sbjct: 3 VTNRMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREEL 62
Query: 171 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTL 230
GSYVGEVVKPMDKKKVLVKVHPEGKF TPNCRVALRNESYTL
Sbjct: 63 QLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTL 122
Query: 231 HKILPNKMD 239
HKILPNK+D
Sbjct: 123 HKILPNKVD 131
Score = 166 (63.5 bits), Expect = 4.2e-130, Sum P(2) = 4.2e-130
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 344 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 390
>UNIPROTKB|F1NU79 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
Ensembl:ENSGALT00000000469 Uniprot:F1NU79
Length = 412
Score = 1083 (386.3 bits), Expect = 5.5e-169, Sum P(2) = 5.5e-169
Identities = 218/286 (76%), Positives = 232/286 (81%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M++D+ K G + YY++KIEELQLIV EK QNLRRLQAQRNELNAKVR+LR
Sbjct: 12 PEQMEMDDG-KGGTGLRQYYLSKIEELQLIVNEKSQNLRRLQAQRNELNAKVRLLREELQ 70
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLH
Sbjct: 71 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 130
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPK
Sbjct: 131 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 190
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPS
Sbjct: 191 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 250
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 251 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 296
Score = 582 (209.9 bits), Expect = 5.5e-169, Sum P(2) = 5.5e-169
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 296 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 355
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 356 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 412
Score = 402 (146.6 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
Identities = 83/126 (65%), Positives = 92/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q +D+ K G + YY++KIEELQLIV EK QNLRRLQAQRNELNAKVR+LR
Sbjct: 14 QMEMDDG-KGGTGLRQYYLSKIEELQLIVNEKSQNLRRLQAQRNELNAKVRLLREELQLL 72
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 73 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 132
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 133 LPNKVD 138
Score = 166 (63.5 bits), Expect = 5.0e-125, Sum P(2) = 5.0e-125
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 351 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 397
>UNIPROTKB|P62194 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
Length = 406
Score = 1081 (385.6 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 217/286 (75%), Positives = 233/286 (81%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 6 PEQMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 64
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLH
Sbjct: 65 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 124
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPS
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 400 (145.9 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 82/126 (65%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 127 LPNKVD 132
Score = 166 (63.5 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>UNIPROTKB|P62195 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
"nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=IPI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043069 "negative regulation of programmed cell
death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
[GO:0003712 "transcription cofactor activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
Ensembl:ENST00000375812 Ensembl:ENST00000580864
Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
Length = 406
Score = 1081 (385.6 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 217/286 (75%), Positives = 233/286 (81%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 6 PEQMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 64
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLH
Sbjct: 65 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 124
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPS
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 400 (145.9 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 82/126 (65%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 127 LPNKVD 132
Score = 166 (63.5 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>UNIPROTKB|P62197 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
Uniprot:P62197
Length = 406
Score = 1081 (385.6 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 217/286 (75%), Positives = 233/286 (81%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 6 PEQMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 64
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLH
Sbjct: 65 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 124
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPS
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 400 (145.9 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 82/126 (65%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 127 LPNKVD 132
Score = 166 (63.5 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>MGI|MGI:105047 [details] [associations]
symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO;ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
Length = 406
Score = 1081 (385.6 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 217/286 (75%), Positives = 233/286 (81%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 6 PEQMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 64
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLH
Sbjct: 65 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 124
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPS
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 400 (145.9 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 82/126 (65%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 127 LPNKVD 132
Score = 166 (63.5 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>RGD|708376 [details] [associations]
symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008134 "transcription factor binding" evidence=ISO;ISS]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
ArrayExpress:P62198 Genevestigator:P62198
GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
Length = 406
Score = 1081 (385.6 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 217/286 (75%), Positives = 233/286 (81%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 6 PEQMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 64
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLH
Sbjct: 65 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 124
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPK
Sbjct: 125 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 184
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPS
Sbjct: 185 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 245 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 8.9e-169, Sum P(2) = 8.9e-169
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 400 (145.9 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 82/126 (65%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 127 LPNKVD 132
Score = 166 (63.5 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
symbol:psmc5 "proteasome (prosome, macropain) 26S
subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
Uniprot:Q6AZC1
Length = 406
Score = 1075 (383.5 bits), Expect = 3.8e-168, Sum P(2) = 3.8e-168
Identities = 216/284 (76%), Positives = 231/284 (81%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 296
+MD++++ K G + YY++KIEELQL V EK QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMDIEDS-KGGSGLRQYYLSKIEELQLTVNEKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 297 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 356
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 357 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416
LPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGV
Sbjct: 127 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 186
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
LLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSII
Sbjct: 187 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246
Query: 477 FMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
FM VQRTMLELLNQLDGFEATKNIK
Sbjct: 247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 3.8e-168, Sum P(2) = 3.8e-168
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 397 (144.8 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
Identities = 81/126 (64%), Positives = 92/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++++ K G + YY++KIEELQL V EK QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMDIEDS-KGGSGLRQYYLSKIEELQLTVNEKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 126
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 127 LPNKVD 132
Score = 166 (63.5 bits), Expect = 3.5e-124, Sum P(2) = 3.5e-124
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>UNIPROTKB|Q6AZU7 [details] [associations]
symbol:Q6AZU7 "Putative uncharacterized protein"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
receptor binding" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
Length = 414
Score = 1070 (381.7 bits), Expect = 1.3e-167, Sum P(2) = 1.3e-167
Identities = 214/284 (75%), Positives = 232/284 (81%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 296
+M++DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 16 QMEMDES-RGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 74
Query: 297 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 356
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 75 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 134
Query: 357 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416
LPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGV
Sbjct: 135 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 194
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
LLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSII
Sbjct: 195 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 254
Query: 477 FMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
FM VQRTMLELLNQLDGFEATKNIK
Sbjct: 255 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 298
Score = 582 (209.9 bits), Expect = 1.3e-167, Sum P(2) = 1.3e-167
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 298 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 357
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 358 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 414
Score = 396 (144.5 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 80/126 (63%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q +DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 16 QMEMDES-RGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 74
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 75 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 134
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 135 LPNKVD 140
Score = 166 (63.5 bits), Expect = 1.2e-123, Sum P(2) = 1.2e-123
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 353 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 399
>UNIPROTKB|Q4RG45 [details] [associations]
symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008134 "transcription factor binding" evidence=ISS]
[GO:0031531 "thyrotropin-releasing hormone receptor binding"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
Length = 406
Score = 1069 (381.4 bits), Expect = 1.7e-167, Sum P(2) = 1.7e-167
Identities = 217/285 (76%), Positives = 230/285 (80%)
Query: 236 NKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 295
+ M+V E+ K G + YY++KIEELQL V EK QNLRRLQAQRNELNAKVR+LR
Sbjct: 7 DNMEVVES-KGGSGLRQYYLSKIEELQLTVNEKSQNLRRLQAQRNELNAKVRLLREELQL 65
Query: 296 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 355
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHK
Sbjct: 66 LQEQGSYVGEVVRVMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHK 125
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
ILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKG
Sbjct: 126 ILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKG 185
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSI
Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI 245
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 246 IFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 290
Score = 582 (209.9 bits), Expect = 1.7e-167, Sum P(2) = 1.7e-167
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 290 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 349
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 350 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
Score = 394 (143.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
Identities = 80/118 (67%), Positives = 87/118 (73%)
Query: 122 KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVG 181
K G + YY++KIEELQL V EK QNLRRLQAQRNELNAKVR+LR GSYVG
Sbjct: 15 KGGSGLRQYYLSKIEELQLTVNEKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVG 74
Query: 182 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
EVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKILPNK+D
Sbjct: 75 EVVRVMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 132
Score = 166 (63.5 bits), Expect = 1.5e-123, Sum P(2) = 1.5e-123
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 345 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 391
>UNIPROTKB|Q6P380 [details] [associations]
symbol:psmc5 "Putative uncharacterized protein MGC75584"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0031531
"thyrotropin-releasing hormone receptor binding" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
Uniprot:Q6P380
Length = 414
Score = 1068 (381.0 bits), Expect = 2.1e-167, Sum P(2) = 2.1e-167
Identities = 214/284 (75%), Positives = 232/284 (81%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 296
+M++DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 16 QMEMDES-RGGIGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 74
Query: 297 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 356
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 75 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNDSYTLHKI 134
Query: 357 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416
LPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGV
Sbjct: 135 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 194
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
LLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSII
Sbjct: 195 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 254
Query: 477 FMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
FM VQRTMLELLNQLDGFEATKNIK
Sbjct: 255 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 298
Score = 582 (209.9 bits), Expect = 2.1e-167, Sum P(2) = 2.1e-167
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 298 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 357
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 358 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 414
Score = 394 (143.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
Identities = 80/126 (63%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q +DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 16 QMEMDES-RGGIGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 74
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 75 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNDSYTLHKI 134
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 135 LPNKVD 140
Score = 166 (63.5 bits), Expect = 1.9e-123, Sum P(2) = 1.9e-123
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 353 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 399
>UNIPROTKB|P46470 [details] [associations]
symbol:psmc5 "26S protease regulatory subunit 8"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
KEGG:xla:397968 Uniprot:P46470
Length = 461
Score = 1054 (376.1 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 213/284 (75%), Positives = 231/284 (81%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 296
+M++DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 3 QMEMDES-RGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 61
Query: 297 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 356
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 62 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 121
Query: 357 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416
LPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPE F+ALGIAQPKGV
Sbjct: 122 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGV 181
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
LLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSII
Sbjct: 182 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 241
Query: 477 FMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
FM VQRTMLELLNQLDGFEATKNIK
Sbjct: 242 FMDEIDSIGSRLEGGSGGDSE-VQRTMLELLNQLDGFEATKNIK 284
Score = 582 (209.9 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 284 KVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 343
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK
Sbjct: 344 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 400
Score = 396 (144.5 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
Identities = 80/126 (63%), Positives = 93/126 (73%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q +DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 3 QMEMDES-RGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 61
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKI
Sbjct: 62 QEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKI 121
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 122 LPNKVD 127
Score = 166 (63.5 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + EL+ G E +KGVCTEAGMYALRERRVHVTQEDFEMAVAKV+
Sbjct: 339 RKIAELMPGASGAE----VKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 385
>FB|FBgn0039788 [details] [associations]
symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
NextBio:834976 Uniprot:Q9VA54
Length = 399
Score = 1023 (365.2 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 211/284 (74%), Positives = 221/284 (77%)
Query: 238 MDVDEAI-KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 296
M D I + SEGF YY KI ELQ V E+++NL RLQAQRNELN KVR+LR
Sbjct: 1 MSKDVGIPEGSEGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLL 60
Query: 297 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 356
GSY+ EVVKPMDK KVLVKVHPEGK+ TP+ RVALRNESYTLHKI
Sbjct: 61 QEQGSYIAEVVKPMDKNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKI 120
Query: 357 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416
LPNKVDPLVSLM+VEKVPDSTYEMVGGLD QI+EIKEVIELPVKHPELFDALGI QPKGV
Sbjct: 121 LPNKVDPLVSLMLVEKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGV 180
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII
Sbjct: 181 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 240
Query: 477 FMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
FM VQRTMLELLNQLDGFEATKNIK
Sbjct: 241 FMDEIDSIGSARLETGTGDSE-VQRTMLELLNQLDGFEATKNIK 283
Score = 559 (201.8 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
Identities = 109/117 (93%), Positives = 113/117 (96%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRID+LD ALLRPGRIDRKIEFPPPNEEARLDIL+IHSRKMNLTRGINLRKIAE
Sbjct: 283 KVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 342
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV+KVM KDSEKNMSI+K WK
Sbjct: 343 EMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDSEKNMSIRKFWK 399
Score = 359 (131.4 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 73/118 (61%), Positives = 82/118 (69%)
Query: 122 KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVG 181
+ SEGF YY KI ELQ V E+++NL RLQAQRNELN KVR+LR GSY+
Sbjct: 9 EGSEGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIA 68
Query: 182 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
EVVKPMDK KVLVKVHPEGK+ TP+ RVALRNESYTLHKILPNK+D
Sbjct: 69 EVVKPMDKNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVD 126
Score = 165 (63.1 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
++ ++ G + +KGVCTEAGMYALRERRVHVTQEDFEMAV+KV+M
Sbjct: 339 KIAEEMPGASGAE-VKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMM 385
Score = 37 (18.1 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFK 128
E T + E QRT+ E + +GF+
Sbjct: 254 ETGTGDSEVQRTMLELLNQLDGFE 277
>WB|WBGene00004506 [details] [associations]
symbol:rpt-6 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
Uniprot:Q9XTT9
Length = 416
Score = 987 (352.5 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 202/288 (70%), Positives = 219/288 (76%)
Query: 235 PNKMDVDEAIKSSEG--FKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXX 292
P+K + + S+ + Y+ TK+++ Q VA+K QN+RRLQAQRNELN KVRML+
Sbjct: 13 PSKPTAQKLTEESDEKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEE 72
Query: 293 XXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYT 352
GSYVGEV K MDKKKVLVKVHPEGK+ RVALR +SY
Sbjct: 73 LQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYA 132
Query: 353 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 412
LHK+LPNKVDPLVSLMMVEKVPDSTYEMVGGLD QIKEIKEVIELPVKHPELFDALGIAQ
Sbjct: 133 LHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQ 192
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA 472
PKGVLL+GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG+RMVRELFVMAREHA
Sbjct: 193 PKGVLLFGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHA 252
Query: 473 PSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
PSIIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 253 PSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIK 300
Score = 529 (191.3 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 103/117 (88%), Positives = 110/117 (94%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILDPALLRPGRIDRKIEFP P+E+AR DIL+IHSRKMNL RGIN+ KIAE
Sbjct: 300 KVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNLMRGINMAKIAE 359
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
+PGASGAEVK VCTEAGM+ALRERR+HVTQEDFEMAV KVMQKDSEKNMSIKKLWK
Sbjct: 360 QIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVMQKDSEKNMSIKKLWK 416
Score = 312 (114.9 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 65/126 (51%), Positives = 82/126 (65%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q+ +E+ + + + Y+ TK+++ Q VA+K QN+RRLQAQRNELN KVRML+
Sbjct: 19 QKLTEESDEKT--LRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQL 76
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
GSYVGEV K MDKKKVLVKVHPEGK+ RVALR +SY LHK+
Sbjct: 77 HEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKL 136
Query: 234 LPNKMD 239
LPNK+D
Sbjct: 137 LPNKVD 142
Score = 155 (59.6 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
M ++ Q+ G + +K VCTEAGM+ALRERR+HVTQEDFEMAV KV+
Sbjct: 354 MAKIAEQIPGASGAE-VKSVCTEAGMFALRERRIHVTQEDFEMAVGKVM 401
>WB|WBGene00018991 [details] [associations]
symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
Length = 432
Score = 955 (341.2 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 194/290 (66%), Positives = 216/290 (74%)
Query: 233 ILPN--KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR 290
+ PN K +A + +PY+ TK+E+ + VAEK N+RRL AQ+ ELN KVR+L+
Sbjct: 27 VFPNSRKPATLDANSDEQTLRPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLK 86
Query: 291 XXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNES 350
GS+VGEV K MDKKKVLVK HP+GK+ RVALR ++
Sbjct: 87 EEISHLHEQGSHVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADN 146
Query: 351 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGI 410
Y +H++LP+KVDPLVSLMMVEKVPDSTYEMVGGLD QIKEIKEVIELPVKHPELFDALGI
Sbjct: 147 YAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGI 206
Query: 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARE 470
AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG+RMVRELFVMARE
Sbjct: 207 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMARE 266
Query: 471 HAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
HAPSIIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 267 HAPSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIK 316
Score = 508 (183.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 100/117 (85%), Positives = 107/117 (91%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILD ALLRPGRIDRKIEFP P+E+AR IL+IHSRKMNL RGI + KIAE
Sbjct: 316 KVIMATNRIDILDSALLRPGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAE 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
+PGASGAEVK VCTEAGM+ALRERR+HVTQEDFEMAV KVMQKDSEKNMSIKKLWK
Sbjct: 376 QIPGASGAEVKSVCTEAGMFALRERRIHVTQEDFEMAVGKVMQKDSEKNMSIKKLWK 432
Score = 277 (102.6 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 56/124 (45%), Positives = 77/124 (62%)
Query: 116 TVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXX 175
T+D A + +PY+ TK+E+ + VAEK N+RRL AQ+ ELN KVR+L+
Sbjct: 36 TLD-ANSDEQTLRPYFKTKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHE 94
Query: 176 XGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILP 235
GS+VGEV K MDKKKVLVK HP+GK+ RVALR ++Y +H++LP
Sbjct: 95 QGSHVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLP 154
Query: 236 NKMD 239
+K+D
Sbjct: 155 SKVD 158
Score = 152 (58.6 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
M ++ Q+ G + +K VCTEAGM+ALRERR+HVTQEDFEMAV KV+
Sbjct: 370 MDKIAEQIPGASGAE-VKSVCTEAGMFALRERRIHVTQEDFEMAVGKVM 417
>TAIR|locus:2147670 [details] [associations]
symbol:RPT6A "regulatory particle triple-A ATPase 6A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
Length = 419
Score = 948 (338.8 bits), Expect = 4.1e-147, Sum P(2) = 4.1e-147
Identities = 192/279 (68%), Positives = 212/279 (75%)
Query: 243 AIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSY 302
A K EG K YY+ I ELQ + +K NL RL+AQRNELN++VRMLR GSY
Sbjct: 25 AAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 84
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
VGEVVK M K KVLVKVHPEGK+ TP+ RVALRN+SY LH +LP+KVD
Sbjct: 85 VGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVD 144
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
PLV+LM VEKVPDSTY+M+GGLD QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPP
Sbjct: 145 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPP 204
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 264
Query: 483 XXXXXXXXXXXXXXXX-VQRTMLELLNQLDGFEATKNIK 520
VQRTMLELLNQLDGFEA+ IK
Sbjct: 265 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303
Score = 510 (184.6 bits), Expect = 4.1e-147, Sum P(2) = 4.1e-147
Identities = 99/117 (84%), Positives = 110/117 (94%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+R DIL+IHSRKMNL RGI+L+KIAE
Sbjct: 303 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAE 362
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M GASGAE+K VCTEAGM+ALRERRVHVTQEDFEMAVAKVM+KD+EKNMS++KLWK
Sbjct: 363 KMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419
Score = 318 (117.0 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 66/120 (55%), Positives = 78/120 (65%)
Query: 120 AIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSY 179
A K EG K YY+ I ELQ + +K NL RL+AQRNELN++VRMLR GSY
Sbjct: 25 AAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 84
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
VGEVVK M K KVLVKVHPEGK+ TP+ RVALRN+SY LH +LP+K+D
Sbjct: 85 VGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVD 144
Score = 154 (59.3 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+ + E +N G E +K VCTEAGM+ALRERRVHVTQEDFEMAVAKV+
Sbjct: 358 KKIAEKMNGASGAE----LKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM 404
>TAIR|locus:2147685 [details] [associations]
symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
Length = 419
Score = 948 (338.8 bits), Expect = 4.1e-147, Sum P(2) = 4.1e-147
Identities = 191/279 (68%), Positives = 212/279 (75%)
Query: 243 AIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSY 302
A K EG YY+ ++ELQ + EK NL RL+AQRNELN++VRMLR GSY
Sbjct: 25 AAKQGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 84
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
VGEVVK M K KVLVKVHPEGK+ TP+ RVALRN+SY LH +LP+KVD
Sbjct: 85 VGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVD 144
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
PLV+LM VEKVPDSTY+M+GGLD QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPP
Sbjct: 145 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPP 204
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 264
Query: 483 XXXXXXXXXXXXXXXX-VQRTMLELLNQLDGFEATKNIK 520
VQRTMLELLNQLDGFEA+ IK
Sbjct: 265 SIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK 303
Score = 510 (184.6 bits), Expect = 4.1e-147, Sum P(2) = 4.1e-147
Identities = 99/117 (84%), Positives = 110/117 (94%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+R DIL+IHSRKMNL RGI+L+KIAE
Sbjct: 303 KVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAE 362
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M GASGAE+K VCTEAGM+ALRERRVHVTQEDFEMAVAKVM+KD+EKNMS++KLWK
Sbjct: 363 KMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419
Score = 318 (117.0 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 65/120 (54%), Positives = 78/120 (65%)
Query: 120 AIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSY 179
A K EG YY+ ++ELQ + EK NL RL+AQRNELN++VRMLR GSY
Sbjct: 25 AAKQGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 84
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
VGEVVK M K KVLVKVHPEGK+ TP+ RVALRN+SY LH +LP+K+D
Sbjct: 85 VGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVD 144
Score = 154 (59.3 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+ + E +N G E +K VCTEAGM+ALRERRVHVTQEDFEMAVAKV+
Sbjct: 358 KKIAEKMNGASGAE----LKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM 404
>POMBASE|SPBC23G7.12c [details] [associations]
symbol:rpt6 "19S proteasome regulatory subunit Rpt6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
Length = 403
Score = 956 (341.6 bits), Expect = 1.8e-144, Sum P(2) = 1.8e-144
Identities = 193/278 (69%), Positives = 214/278 (76%)
Query: 244 IKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYV 303
++S+E YY KI++ +L + +K QNLRRL+AQRN LNA+VR+LR GSYV
Sbjct: 10 LQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYV 69
Query: 304 GEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDP 363
GEV+K M K KVLVKVHPEGK+ PN RVALRN+SY L KILPNKVDP
Sbjct: 70 GEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDP 129
Query: 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423
LVSLMMVEK+PDSTYEMVGGL+ QIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPG
Sbjct: 130 LVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPG 189
Query: 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXX 483
TGKTLLARAVAHHT+C FIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 190 TGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 249
Query: 484 XXXXXXXXXXXXXXX-VQRTMLELLNQLDGFEATKNIK 520
VQRTMLELLNQLDGFEATKNIK
Sbjct: 250 IGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIK 287
Score = 477 (173.0 bits), Expect = 1.8e-144, Sum P(2) = 1.8e-144
Identities = 94/117 (80%), Positives = 105/117 (89%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRIDILDPALLRPGRIDRKIEFPPP+ EAR +ILRIHSR MNLTRGI+L+ IAE
Sbjct: 287 KVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAE 346
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M GASGAE+KGVCTEAGM+ALRERRVHVTQEDFE+AVAKV+ K MS++KL+K
Sbjct: 347 KMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDSGEMSLQKLFK 403
Score = 312 (114.9 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 64/119 (53%), Positives = 79/119 (66%)
Query: 121 IKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYV 180
++S+E YY KI++ +L + +K QNLRRL+AQRN LNA+VR+LR GSYV
Sbjct: 10 LQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYV 69
Query: 181 GEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
GEV+K M K KVLVKVHPEGK+ PN RVALRN+SY L KILPNK+D
Sbjct: 70 GEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVD 128
Score = 160 (61.4 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+++ E +N G E +KGVCTEAGM+ALRERRVHVTQEDFE+AVAKV+
Sbjct: 342 KSIAEKMNGASGAE----LKGVCTEAGMFALRERRVHVTQEDFELAVAKVL 388
>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
symbol:PFL2345c "tat-binding protein homolog"
species:5833 "Plasmodium falciparum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
Uniprot:Q8I4U5
Length = 435
Score = 941 (336.3 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 192/285 (67%), Positives = 219/285 (76%)
Query: 241 DEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXG 300
+E ++S G K YY KIEE + I+ +K QN +RL+AQRNELNA+VR L
Sbjct: 43 EEQVQS--GIKRYYELKIEEYESIINKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAA 100
Query: 301 SYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNK 360
SYVGE+VKPM K KVLVK++PEGK+ TPN RVAL N+SY LHKILP+K
Sbjct: 101 SYVGEIVKPMGKNKVLVKINPEGKYVVDIARHINISHCTPNTRVALYNDSYKLHKILPSK 160
Query: 361 VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420
VDPLVSLM VEKVPDSTYEMVGGLD Q+KE+KEVIELPVKHPE+F++LGI+QPKGVLLYG
Sbjct: 161 VDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYG 220
Query: 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXX 480
PPGTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 221 PPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE 280
Query: 481 XXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGV-CT 524
VQRTM+ELLNQLDGFE+T+NIK + CT
Sbjct: 281 IDSIGSQRIEGEHGDSE-VQRTMMELLNQLDGFESTQNIKVIMCT 324
Score = 469 (170.2 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIM TNRIDILD ALLRPGRIDRKIEFP PN EAR++IL+IHSRKMNL RGI++ KIA
Sbjct: 319 KVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIAT 378
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M SGAEVK VCTEAGM+ALRERRVHVTQEDFEMAVAKVM++D+EKN +++KLWK
Sbjct: 379 DMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKQDAEKNFTLRKLWK 435
Score = 303 (111.7 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 70/157 (44%), Positives = 93/157 (59%)
Query: 85 IRKEN-KEKLQNA-NEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIV 142
+R +N E ++N +E M+ + +E ++S G K YY KIEE + I+
Sbjct: 8 VRSKNLSEGIKNEISEKNMENNNNNDNNKNSSALNEEQVQS--GIKRYYELKIEEYESII 65
Query: 143 AEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKF 202
+K QN +RL+AQRNELNA+VR L SYVGE+VKPM K KVLVK++PEGK+
Sbjct: 66 NKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKY 125
Query: 203 XXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
TPN RVAL N+SY LHKILP+K+D
Sbjct: 126 VVDIARHINISHCTPNTRVALYNDSYKLHKILPSKVD 162
Score = 156 (60.0 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
ML++ ++ + +K VCTEAGM+ALRERRVHVTQEDFEMAVAKV+
Sbjct: 373 MLKIATDMNNCSGAE-VKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM 420
>UNIPROTKB|Q8I4U5 [details] [associations]
symbol:PFL2345c "Tat-binding protein homolog" species:36329
"Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
Length = 435
Score = 941 (336.3 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 192/285 (67%), Positives = 219/285 (76%)
Query: 241 DEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXG 300
+E ++S G K YY KIEE + I+ +K QN +RL+AQRNELNA+VR L
Sbjct: 43 EEQVQS--GIKRYYELKIEEYESIINKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAA 100
Query: 301 SYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNK 360
SYVGE+VKPM K KVLVK++PEGK+ TPN RVAL N+SY LHKILP+K
Sbjct: 101 SYVGEIVKPMGKNKVLVKINPEGKYVVDIARHINISHCTPNTRVALYNDSYKLHKILPSK 160
Query: 361 VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420
VDPLVSLM VEKVPDSTYEMVGGLD Q+KE+KEVIELPVKHPE+F++LGI+QPKGVLLYG
Sbjct: 161 VDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPKGVLLYG 220
Query: 421 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXX 480
PPGTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 221 PPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE 280
Query: 481 XXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGV-CT 524
VQRTM+ELLNQLDGFE+T+NIK + CT
Sbjct: 281 IDSIGSQRIEGEHGDSE-VQRTMMELLNQLDGFESTQNIKVIMCT 324
Score = 469 (170.2 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIM TNRIDILD ALLRPGRIDRKIEFP PN EAR++IL+IHSRKMNL RGI++ KIA
Sbjct: 319 KVIMCTNRIDILDEALLRPGRIDRKIEFPNPNVEARMEILKIHSRKMNLMRGIDMLKIAT 378
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M SGAEVK VCTEAGM+ALRERRVHVTQEDFEMAVAKVM++D+EKN +++KLWK
Sbjct: 379 DMNNCSGAEVKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKQDAEKNFTLRKLWK 435
Score = 303 (111.7 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 70/157 (44%), Positives = 93/157 (59%)
Query: 85 IRKEN-KEKLQNA-NEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIV 142
+R +N E ++N +E M+ + +E ++S G K YY KIEE + I+
Sbjct: 8 VRSKNLSEGIKNEISEKNMENNNNNDNNKNSSALNEEQVQS--GIKRYYELKIEEYESII 65
Query: 143 AEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKF 202
+K QN +RL+AQRNELNA+VR L SYVGE+VKPM K KVLVK++PEGK+
Sbjct: 66 NKKLQNKKRLEAQRNELNARVRELCDEIQYLLEAASYVGEIVKPMGKNKVLVKINPEGKY 125
Query: 203 XXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
TPN RVAL N+SY LHKILP+K+D
Sbjct: 126 VVDIARHINISHCTPNTRVALYNDSYKLHKILPSKVD 162
Score = 156 (60.0 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
ML++ ++ + +K VCTEAGM+ALRERRVHVTQEDFEMAVAKV+
Sbjct: 373 MLKIATDMNNCSGAE-VKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM 420
>CGD|CAL0006022 [details] [associations]
symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051091 "positive regulation
of sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
Length = 401
Score = 926 (331.0 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 185/281 (65%), Positives = 214/281 (76%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXX 299
+D++ G +PY+ +I++ ++ + + QNLRRL+AQRN+LN KVR L+
Sbjct: 5 IDKSYVHEGGIRPYFEQQIQDTEIRIQQTTQNLRRLEAQRNKLNNKVRQLKDELKLLQEP 64
Query: 300 GSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPN 359
GSYVGEVVK M KKVLVK+HPEGKF TP+ RV L+ +S+ L+KILP
Sbjct: 65 GSYVGEVVKVMGLKKVLVKIHPEGKFIVNVTKDIDVKKLTPSIRVCLKPDSHDLYKILPT 124
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
KVDPLVSLMMVEKVPDSTY+MVGGLD QIKEIKEVIELPVKHPELF++LGIAQPKGV+LY
Sbjct: 125 KVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEIKEVIELPVKHPELFESLGIAQPKGVILY 184
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPGTGKTLLARAVAHHTEC FIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 185 GPPGTGKTLLARAVAHHTECKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMD 244
Query: 480 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLELLNQLDGFE++K+IK
Sbjct: 245 EIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIK 285
Score = 472 (171.2 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 92/117 (78%), Positives = 104/117 (88%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR+DILDPALLRPGRIDRKIEFP P AR DIL+IHSR MNLTRGINLRKIAE
Sbjct: 285 KIIMATNRLDILDPALLRPGRIDRKIEFPAPTVAARTDILKIHSRSMNLTRGINLRKIAE 344
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M G SGA+VKGVCTEAGMYALRERR+HVTQEDFE+AVAKVM K+ + +S++KL+K
Sbjct: 345 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVAKVMSKNDDGAVSLQKLFK 401
Score = 279 (103.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 56/124 (45%), Positives = 79/124 (63%)
Query: 116 TVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXX 175
++D++ G +PY+ +I++ ++ + + QNLRRL+AQRN+LN KVR L+
Sbjct: 4 SIDKSYVHEGGIRPYFEQQIQDTEIRIQQTTQNLRRLEAQRNKLNNKVRQLKDELKLLQE 63
Query: 176 XGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILP 235
GSYVGEVVK M KKVLVK+HPEGKF TP+ RV L+ +S+ L+KILP
Sbjct: 64 PGSYVGEVVKVMGLKKVLVKIHPEGKFIVNVTKDIDVKKLTPSIRVCLKPDSHDLYKILP 123
Query: 236 NKMD 239
K+D
Sbjct: 124 TKVD 127
Score = 162 (62.1 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555
R + E +N G + +KGVCTEAGMYALRERR+HVTQEDFE+AVAKV M+ N
Sbjct: 340 RKIAEKMNGCSGAD----VKGVCTEAGMYALRERRIHVTQEDFELAVAKV-MSKN 389
>SGD|S000003016 [details] [associations]
symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
"proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019904 "protein domain specific binding"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
repair" evidence=IGI] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
GermOnline:YGL048C Uniprot:Q01939
Length = 405
Score = 897 (320.8 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
Identities = 180/272 (66%), Positives = 204/272 (75%)
Query: 249 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVK 308
G KPY+ KI+E +L + K +N+RRL+AQRN LN KVR ++ GSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 309 PMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLM 368
+ KKVLVKV PEGK+ + RV LR++SY LHK+L NK DPLVSLM
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLM 137
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
MVEKVPDSTY+MVGGL QIKEIKEVIELPVKHPELF++LGIAQPKGV+LYGPPGTGKTL
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVAHHT+C FIRVSG+ELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLELLNQLDGFE +KNIK
Sbjct: 258 VEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289
Score = 483 (175.1 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
Identities = 93/117 (79%), Positives = 105/117 (89%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR+DILDPALLRPGRIDRKIEFPPP+ AR +ILRIHSRKMNLTRGINLRK+AE
Sbjct: 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M G SGA+VKGVCTEAGMYALRERR+HVTQEDFE+AV KVM K+ E +S+ KL+K
Sbjct: 349 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405
Score = 261 (96.9 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 54/114 (47%), Positives = 70/114 (61%)
Query: 126 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVK 185
G KPY+ KI+E +L + K +N+RRL+AQRN LN KVR ++ GSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 186 PMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ KKVLVKV PEGK+ + RV LR++SY LHK+L NK D
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKAD 131
Score = 157 (60.3 bits), Expect = 1.9e-104, Sum P(2) = 1.9e-104
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
R + E +N G + +KGVCTEAGMYALRERR+HVTQEDFE+AV KV+
Sbjct: 344 RKVAEKMNGCSGAD----VKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390
>ASPGD|ASPL0000064945 [details] [associations]
symbol:AN6988 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
Uniprot:Q5AXJ2
Length = 389
Score = 888 (317.7 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
Identities = 181/268 (67%), Positives = 203/268 (75%)
Query: 253 YYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDK 312
YY KIE ++L + + + LRRL+AQRN+ N++VR+LR GSYVGEVVK M
Sbjct: 6 YYRNKIESMKLEIIQGQAVLRRLEAQRNDYNSRVRLLREELGLLQQPGSYVGEVVKVMST 65
Query: 313 KKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEK 372
KKVLVKVHPEGK+ T RVAL ++SY L K+LP+ VDPLVSLMMVEK
Sbjct: 66 KKVLVKVHPEGKYVVDIADGVDIGKLTVGKRVALLSDSYKLEKMLPSSVDPLVSLMMVEK 125
Query: 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432
VPDSTY+M+GGLD QIKEIKEVIEL +KHPELF++LGIAQPKGVLLYGPPGTGKTLLARA
Sbjct: 126 VPDSTYDMIGGLDQQIKEIKEVIELGLKHPELFESLGIAQPKGVLLYGPPGTGKTLLARA 185
Query: 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXX 492
VAHHT+C FIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFM
Sbjct: 186 VAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIDSA 245
Query: 493 XXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLELLNQLDGFE TKNIK
Sbjct: 246 GSGDSEVQRTMLELLNQLDGFEPTKNIK 273
Score = 478 (173.3 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
Identities = 91/117 (77%), Positives = 104/117 (88%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR+DILDPALLRPGRIDRKIEFPPP+ EAR DILRIHSR MNLTRGINL KIAE
Sbjct: 273 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVEARADILRIHSRSMNLTRGINLTKIAE 332
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M G SGAE+KGVCTEAGMYALRERRVHVTQEDF++A AK++ K +K +++ KL+K
Sbjct: 333 KMNGCSGAELKGVCTEAGMYALRERRVHVTQEDFDLATAKILNKHDDKEVAVSKLFK 389
Score = 246 (91.7 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 53/110 (48%), Positives = 69/110 (62%)
Query: 130 YYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDK 189
YY KIE ++L + + + LRRL+AQRN+ N++VR+LR GSYVGEVVK M
Sbjct: 6 YYRNKIESMKLEIIQGQAVLRRLEAQRNDYNSRVRLLREELGLLQQPGSYVGEVVKVMST 65
Query: 190 KKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
KKVLVKVHPEGK+ T RVAL ++SY L K+LP+ +D
Sbjct: 66 KKVLVKVHPEGKYVVDIADGVDIGKLTVGKRVALLSDSYKLEKMLPSSVD 115
Score = 154 (59.3 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 28/49 (57%), Positives = 40/49 (81%)
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+ ++ +++G + +KGVCTEAGMYALRERRVHVTQEDF++A AK++
Sbjct: 327 LTKIAEKMNGCSGAE-LKGVCTEAGMYALRERRVHVTQEDFDLATAKIL 374
Score = 52 (23.4 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 99 GEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
G +D A + + E QRT+ E + +GF+P KI
Sbjct: 238 GSSRIDSAGSGDSEVQRTMLELLNQLDGFEPTKNIKI 274
>UNIPROTKB|J3QQM1 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC015651 ChiTaRS:PSMC5
HGNC:HGNC:9552 Ensembl:ENST00000582130 Uniprot:J3QQM1
Length = 263
Score = 752 (269.8 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 148/174 (85%), Positives = 153/174 (87%)
Query: 339 TPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELP 398
TPNCRVALRN+SYTLHKILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELP
Sbjct: 90 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 149
Query: 399 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGS 458
VKHPELF+ALGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+
Sbjct: 150 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGA 209
Query: 459 RMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDG 512
RMVRELFVMAREHAPSIIFM VQRTMLELLNQLDG
Sbjct: 210 RMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDG 263
Score = 270 (100.1 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 56/87 (64%), Positives = 67/87 (77%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
P +M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 6 PEQMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 64
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHP 321
GSYVGEVV+ MDKKKVLVKV P
Sbjct: 65 LLQEQGSYVGEVVRAMDKKKVLVKVTP 91
Score = 258 (95.9 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 55/85 (64%), Positives = 64/85 (75%)
Query: 114 QRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
Q ++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 66
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHP 198
GSYVGEVV+ MDKKKVLVKV P
Sbjct: 67 QEQGSYVGEVVRAMDKKKVLVKVTP 91
Score = 123 (48.4 bits), Expect = 7.9e-32, Sum P(2) = 7.9e-32
Identities = 22/24 (91%), Positives = 24/24 (100%)
Query: 216 TPNCRVALRNESYTLHKILPNKMD 239
TPNCRVALRN+SYTLHKILPNK+D
Sbjct: 90 TPNCRVALRNDSYTLHKILPNKVD 113
>UNIPROTKB|J3KRP2 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031595 "nuclear proteasome complex"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003959 Pfam:PF00004
GO:GO:0005524 EMBL:AC015651 ChiTaRS:PSMC5 HGNC:HGNC:9552
Ensembl:ENST00000584320 Uniprot:J3KRP2
Length = 241
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 194/241 (80%), Positives = 209/241 (86%)
Query: 238 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXX 297
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 1 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 59
Query: 298 XXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKIL 357
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKIL
Sbjct: 60 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 119
Query: 358 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 417
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 120 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 179
Query: 418 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIF 477
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSIIF
Sbjct: 180 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIF 239
Query: 478 M 478
M
Sbjct: 240 M 240
Score = 398 (145.2 bits), Expect = 9.0e-37, P = 9.0e-37
Identities = 80/118 (67%), Positives = 89/118 (75%)
Query: 122 KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVG 181
K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR GSYVG
Sbjct: 7 KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVG 66
Query: 182 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
EVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKILPNK+D
Sbjct: 67 EVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 124
>UNIPROTKB|J3QSA9 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031595 "nuclear proteasome complex"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AC015651 ChiTaRS:PSMC5 HGNC:HGNC:9552 Ensembl:ENST00000585123
Uniprot:J3QSA9
Length = 257
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 194/241 (80%), Positives = 209/241 (86%)
Query: 238 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXX 297
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 1 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 59
Query: 298 XXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKIL 357
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKIL
Sbjct: 60 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 119
Query: 358 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 417
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 120 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 179
Query: 418 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIF 477
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAREHAPSIIF
Sbjct: 180 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIF 239
Query: 478 M 478
M
Sbjct: 240 M 240
Score = 398 (145.2 bits), Expect = 9.0e-37, P = 9.0e-37
Identities = 80/118 (67%), Positives = 89/118 (75%)
Query: 122 KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVG 181
K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR GSYVG
Sbjct: 7 KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVG 66
Query: 182 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
EVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKILPNK+D
Sbjct: 67 EVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 124
>DICTYBASE|DDB_G0292382 [details] [associations]
symbol:psmC5 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=ISS] [GO:0005838 "proteasome regulatory particle"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
ProtClustDB:CLSZ2429412 Uniprot:P34124
Length = 403
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 214/374 (57%), Positives = 257/374 (68%)
Query: 236 NKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 295
N+ + DE ++G K YY +KIEEL++ V EK Q+LRRL+AQRNELN +VRML+
Sbjct: 6 NQQNKDE----TKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQL 61
Query: 296 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 355
GS+V EVVK M K KVLVKV+PEGKF TP+ R AL++ESYTLH+
Sbjct: 62 LTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHR 121
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
ILPNK+DPLVSLM VEK+PDSTY+MVGGLD QIKEIKEVIELP+KHPELF++LGIAQPKG
Sbjct: 122 ILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKG 181
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELF+MAREHAPSI
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSI 241
Query: 476 IFMXXXXXXXXXXXXXXXXXXXX-VQRTMLELLNQLDGFEATKNIKGV-CTEAGMYALRE 533
IFM VQRTMLELLNQLDGFE+TKNIK + CT
Sbjct: 242 IFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTN-------- 293
Query: 534 RRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRID-RKIEFPPPNEEARLDILRIHS 592
R+ + + A+ + +I+ +P GR+D KI N +++ +I S
Sbjct: 294 -RIDI----LDPALLRPGRIDRKIEFPNPG--DAGRLDILKIHSRKMNLTRGINLKKI-S 345
Query: 593 RKMNLTRGINLRKI 606
KMN G L+ +
Sbjct: 346 DKMNGASGAELKAV 359
Score = 503 (182.1 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 97/117 (82%), Positives = 108/117 (92%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+M TNRIDILDPALLRPGRIDRKIEFP P + RLDIL+IHSRKMNLTRGINL+KI++
Sbjct: 287 KVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISD 346
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
M GASGAE+K VCTEAGMYALRERRVHV+QEDFEMAV+KVM+KDSE+NMSI KLWK
Sbjct: 347 KMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKKDSEQNMSINKLWK 403
Score = 313 (115.2 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 65/116 (56%), Positives = 81/116 (69%)
Query: 124 SEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEV 183
++G K YY +KIEEL++ V EK Q+LRRL+AQRNELN +VRML+ GS+V EV
Sbjct: 13 TKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEV 72
Query: 184 VKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
VK M K KVLVKV+PEGKF TP+ R AL++ESYTLH+ILPNK+D
Sbjct: 73 VKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKID 128
Score = 150 (57.9 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
Identities = 29/47 (61%), Positives = 40/47 (85%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ ++++G + +K VCTEAGMYALRERRVHV+QEDFEMAV+KV+
Sbjct: 343 KISDKMNGASGAE-LKAVCTEAGMYALRERRVHVSQEDFEMAVSKVM 388
>UNIPROTKB|E2RM61 [details] [associations]
symbol:PSMC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000074947
EMBL:AAEX03006359 ProteinModelPortal:E2RM61 PRIDE:E2RM61
Ensembl:ENSCAFT00000020231 OMA:DSNCELQ NextBio:20855489
Uniprot:E2RM61
Length = 251
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 184/235 (78%), Positives = 191/235 (81%)
Query: 286 VRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVA 345
VR+LR GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVA
Sbjct: 7 VRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVA 66
Query: 346 LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELF 405
LRN+SYTLHKILPNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF
Sbjct: 67 LRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELF 126
Query: 406 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 465
+ALGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELF
Sbjct: 127 EALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELF 186
Query: 466 VMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VMAREHAPSIIFM VQRTMLELLNQLDGFEATKNIK
Sbjct: 187 VMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 241
Score = 246 (91.7 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 50/77 (64%), Positives = 54/77 (70%)
Query: 163 VRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVA 222
VR+LR GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVA
Sbjct: 7 VRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVA 66
Query: 223 LRNESYTLHKILPNKMD 239
LRN+SYTLHKILPNK+D
Sbjct: 67 LRNDSYTLHKILPNKVD 83
>UNIPROTKB|J3QLH6 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0031595 "nuclear proteasome complex"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003959 Pfam:PF00004
GO:GO:0005524 EMBL:AC015651 ChiTaRS:PSMC5 HGNC:HGNC:9552
Ensembl:ENST00000581842 Uniprot:J3QLH6
Length = 215
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 170/216 (78%), Positives = 184/216 (85%)
Query: 238 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXX 297
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR
Sbjct: 1 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 59
Query: 298 XXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKIL 357
GSYVGEVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKIL
Sbjct: 60 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 119
Query: 358 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 417
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 120 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 179
Query: 418 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 453
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKF
Sbjct: 180 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKF 215
Score = 398 (145.2 bits), Expect = 9.0e-37, P = 9.0e-37
Identities = 80/118 (67%), Positives = 89/118 (75%)
Query: 122 KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVG 181
K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LR GSYVG
Sbjct: 7 KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVG 66
Query: 182 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
EVV+ MDKKKVLVKVHPEGKF TPNCRVALRN+SYTLHKILPNK+D
Sbjct: 67 EVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 124
>UNIPROTKB|Q58576 [details] [associations]
symbol:pan "Proteasome-activating nucleotidase"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
"GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
"proteasome-activating nucleotidase complex" evidence=IDA]
[GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
TIGRFAMs:TIGR01242 Uniprot:Q58576
Length = 430
Score = 503 (182.1 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 107/264 (40%), Positives = 156/264 (59%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
+I EL+ + + E + L+ + +L + +LR VG VV + ++KV+
Sbjct: 48 RIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVV 107
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
VK F P RV L ++ T+ +LP D M V++ P+
Sbjct: 108 VKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNV 167
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
YE +GGL+ Q++EI+EV+ELP+KHPELF+ +GI PKG+LLYGPPGTGKTLLA+AVA
Sbjct: 168 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 227
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TFIRV GSELV+KFIGEG+ +V+++F +A+E APSIIF+
Sbjct: 228 TNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD 287
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
VQRT+++LL ++DGF+A ++K
Sbjct: 288 REVQRTLMQLLAEMDGFDARGDVK 311
Score = 332 (121.9 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 64/108 (59%), Positives = 82/108 (75%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+I ATNR DILDPA+LRPGR DR IE P P+E+ RL+IL+IH+RKMNL +NL +IA+
Sbjct: 311 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK 370
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
+ G GAE+K +CTEAGM A+RE R +VT +DF AV K+M+K K
Sbjct: 371 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVK 418
Score = 112 (44.5 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPAL 564
E+ +G + +K +CTEAGM A+RE R +VT +DF AV K IM ++ + +PA
Sbjct: 367 EIAKMTEGCVGAE-LKAICTEAGMNAIRELRDYVTMDDFRKAVEK-IMEKKKVKVKEPAH 424
Query: 565 L 565
L
Sbjct: 425 L 425
Score = 81 (33.6 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 31/138 (22%), Positives = 57/138 (41%)
Query: 105 EAYTYEVERQRTV-DEAIKSSEGFKPYYVTK--IEELQLIVAEKEQNLRRLQAQRNELNA 161
+A+T E + ++ + D + ++ K K I EL+ + + E + L+ + +L
Sbjct: 16 KAFTEEFKEEKEINDNSNLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMK 75
Query: 162 KVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRV 221
+ +LR VG VV + ++KV+VK F P RV
Sbjct: 76 ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRV 135
Query: 222 ALRNESYTLHKILPNKMD 239
L ++ T+ +LP D
Sbjct: 136 CLNQQTLTVVDVLPENKD 153
>FB|FBgn0015282 [details] [associations]
symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
[GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
Length = 439
Score = 507 (183.5 bits), Expect = 8.2e-81, Sum P(3) = 8.2e-81
Identities = 108/267 (40%), Positives = 157/267 (58%)
Query: 257 KIEELQ-LIVAEKE--QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 313
K+E ++ ++ E E +N RL+ Q +E N + R VG + + +D
Sbjct: 63 KLERIKDYLMMEDEFIRNQERLKPQ-DEKNEEER---SKVDDLRGTPMSVGNLEEIIDDN 118
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
+V + P C V L ++ + + +L + DP+V++M +EK
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKA 178
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
P TY +GGLD QI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AV
Sbjct: 179 PQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAV 238
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 239 ANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 298
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 299 GGEREIQRTMLELLNQLDGFDSRGDVK 325
Score = 296 (109.3 bits), Expect = 8.2e-81, Sum P(3) = 8.2e-81
Identities = 57/107 (53%), Positives = 76/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I IH+ +M L +NL ++
Sbjct: 325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIM 384
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ + E
Sbjct: 385 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 431
Score = 103 (41.3 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 381 ELIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 426
Score = 40 (19.1 bits), Expect = 8.2e-81, Sum P(3) = 8.2e-81
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 216 TPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKP 252
TP+ R L+ L +I M DE I++ E KP
Sbjct: 52 TPHTRCRLK--LLKLERIKDYLMMEDEFIRNQERLKP 86
>UNIPROTKB|F1NSP7 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
Uniprot:F1NSP7
Length = 439
Score = 525 (189.9 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 63 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 121
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 122 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 181
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 182 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 241
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 301
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 302 REIQRTMLELLNQLDGFDSRGDVK 325
Score = 292 (107.8 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 57/107 (53%), Positives = 76/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L ++
Sbjct: 325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 384
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 385 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 431
Score = 106 (42.4 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ EL+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 378 TLDELIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 426
Score = 42 (19.8 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 63 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 121
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 122 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 167
>UNIPROTKB|F1NTZ4 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
Uniprot:F1NTZ4
Length = 438
Score = 525 (189.9 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 62 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 120
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 121 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 180
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 181 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 240
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 241 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 300
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 301 REIQRTMLELLNQLDGFDSRGDVK 324
Score = 292 (107.8 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 57/107 (53%), Positives = 76/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L ++
Sbjct: 324 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 383
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 384 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 430
Score = 106 (42.4 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ EL+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 377 TLDELIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 425
Score = 42 (19.8 bits), Expect = 7.1e-24, Sum P(2) = 7.1e-24
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 62 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 120
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 121 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 166
>UNIPROTKB|A4FUZ3 [details] [associations]
symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
InParanoid:A4FUZ3 Uniprot:A4FUZ3
Length = 440
Score = 525 (189.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 290 (107.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 103 (41.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>UNIPROTKB|F1PQ40 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
Uniprot:F1PQ40
Length = 440
Score = 525 (189.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 290 (107.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 103 (41.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>UNIPROTKB|P62191 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000209 "protein polyubiquitination"
evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0002474 "antigen processing and presentation of peptide antigen
via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
presentation of exogenous peptide antigen via MHC class I,
TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
Length = 440
Score = 525 (189.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 290 (107.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 103 (41.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>UNIPROTKB|F2Z5J1 [details] [associations]
symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
KEGG:ssc:100155274 Uniprot:F2Z5J1
Length = 440
Score = 525 (189.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 290 (107.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 103 (41.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>MGI|MGI:106054 [details] [associations]
symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
"TBP-class protein binding" evidence=ISO] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
GermOnline:ENSMUSG00000021178 Uniprot:P62192
Length = 440
Score = 525 (189.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 290 (107.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 103 (41.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>RGD|621097 [details] [associations]
symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
Length = 440
Score = 525 (189.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 109/264 (41%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M VEK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 290 (107.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 103 (41.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 42 (19.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>UNIPROTKB|B4DR63 [details] [associations]
symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
Uniprot:B4DR63
Length = 367
Score = 520 (188.1 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 107/252 (42%), Positives = 146/252 (57%)
Query: 269 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 328
E+ R Q Q L K R VG + + +D +V +
Sbjct: 2 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 61
Query: 329 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 388
P C V L ++ + + +L + DPLV++M VEK P TY +GGLDNQI
Sbjct: 62 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQI 121
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448
+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSE
Sbjct: 122 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 181
Query: 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLN 508
L+QK++G+G ++VRELF +A EHAPSI+F+ +QRTMLELLN
Sbjct: 182 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 241
Query: 509 QLDGFEATKNIK 520
QLDGF++ ++K
Sbjct: 242 QLDGFDSRGDVK 253
Score = 290 (107.1 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 57/107 (53%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L +
Sbjct: 253 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIM 312
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 313 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 359
Score = 103 (41.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 306 TLDDLIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 354
Score = 37 (18.1 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 17/94 (18%), Positives = 29/94 (30%)
Query: 146 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 205
E+ R Q Q L K R VG + + +D +V +
Sbjct: 2 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 61
Query: 206 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P C V L ++ + + +L + D
Sbjct: 62 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 95
>UNIPROTKB|Q90732 [details] [associations]
symbol:PSMC1 "26S protease regulatory subunit 4"
species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
NextBio:20815872 Uniprot:Q90732
Length = 440
Score = 518 (187.4 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
Identities = 107/264 (40%), Positives = 153/264 (57%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V + P C V L ++ + + +L + DPLV++M +EK P
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQE 182
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY +GGLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A EH PSI+F+
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVK 326
Score = 288 (106.4 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
Identities = 56/107 (52%), Positives = 76/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + L ++
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIM 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + + K +E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTE 432
Score = 103 (41.3 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFE 544
T+ EL+ D +IK +CTEAG+ ALRERR+ VT EDF+
Sbjct: 379 TLDELIMAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFK 420
Score = 42 (19.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 19/106 (17%), Positives = 37/106 (34%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R VG + + +D +
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V + P C V L ++ + + +L + D
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>WB|WBGene00004502 [details] [associations]
symbol:rpt-2 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
NextBio:903424 Uniprot:O16368
Length = 443
Score = 513 (185.6 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
Identities = 111/267 (41%), Positives = 159/267 (59%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQ---RNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 313
+I++ L+ E QN RL+ Q + E AKV LR VG + + +D +
Sbjct: 70 RIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMA-------VGSLEEIIDDQ 122
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
+V + + P C V L ++++ + +L + DP+VS+M +EK
Sbjct: 123 HAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKA 182
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
P TY VGGLD QI+EIKE +ELP+ HPE ++ +GI PKGV+LYG PGTGKTLLA+AV
Sbjct: 183 PQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAV 242
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T TF+R+ GSEL+QK++G+G +MVRELF +A E+APSI+F+
Sbjct: 243 ANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNS 302
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 303 GGEREIQRTMLELLNQLDGFDSRGDVK 329
Score = 293 (108.2 bits), Expect = 2.8e-78, Sum P(2) = 2.8e-78
Identities = 56/107 (52%), Positives = 77/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M L + +NL +
Sbjct: 329 KVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFIT 388
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ + E
Sbjct: 389 AKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKKE 435
Score = 101 (40.6 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 397 DIKAMCTEAGLLALRERRMRVTMEDFQKSKENVL 430
Score = 50 (22.7 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
Identities = 24/109 (22%), Positives = 44/109 (40%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQ---RNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 190
+I++ L+ E QN RL+ Q + E AKV LR VG + + +D +
Sbjct: 70 RIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMA-------VGSLEEIIDDQ 122
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+V + + P C V L ++++ + +L + D
Sbjct: 123 HAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTD 171
>SGD|S000002165 [details] [associations]
symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
protein catabolic process" evidence=IDA] [GO:0043171 "peptide
catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
GermOnline:YDL007W Uniprot:P40327
Length = 437
Score = 474 (171.9 bits), Expect = 7.1e-78, Sum P(3) = 7.1e-78
Identities = 87/181 (48%), Positives = 128/181 (70%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P C V L +++ ++ +L + DP+VS+M ++K P +Y +GGL++QI+EIKE +ELP+
Sbjct: 143 PGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPL 202
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+ T TF+R+ GSEL+QK++G+G R
Sbjct: 203 THPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPR 262
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+ R++F +A E+APSI+F+ +QRTMLELLNQLDGF+ ++
Sbjct: 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322
Query: 520 K 520
K
Sbjct: 323 K 323
Score = 294 (108.6 bits), Expect = 7.1e-78, Sum P(3) = 7.1e-78
Identities = 58/110 (52%), Positives = 78/110 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATN+I+ LDPAL+RPGRIDRKI F P+ + IL IH+ KMNL+ +NL +
Sbjct: 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT 382
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
SGA+++ +CTEAG+ ALRERR+ VT EDF+ A +VM+ E+N+
Sbjct: 383 TKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENL 432
Score = 101 (40.6 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID 558
+I+ +CTEAG+ ALRERR+ VT EDF+ A +V+ N+++
Sbjct: 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMK--NKVE 429
Score = 47 (21.6 bits), Expect = 7.1e-78, Sum P(3) = 7.1e-78
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 2 SGEALPNIYLSQKLKLSEVIEPENLLEMLVYNGYLTAIPSQTKDVPLKRKMPGQNK 57
+ E LPNIY S + KL +++ E + + L+ + K P ++K + K
Sbjct: 42 TAEKLPNIYPSTRCKL-KLLRMERIKDHLLLEEEFVSNSEILK--PFEKKQEEEKK 94
Score = 46 (21.3 bits), Expect = 9.1e-78, Sum P(3) = 9.1e-78
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 72 IPNREILTAFHKIIRKENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYY 131
+ N EIL F K ++E K++L+ + + +E D AI +S YY
Sbjct: 76 VSNSEILKPFEKK-QEEEKKQLEEIRGNPLSIGT-----LEEIIDDDHAIVTSPTMPDYY 129
Query: 132 VT 133
V+
Sbjct: 130 VS 131
>ZFIN|ZDB-GENE-040625-69 [details] [associations]
symbol:psmc1b "proteasome (prosome, macropain) 26S
subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
Length = 440
Score = 512 (185.3 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 106/252 (42%), Positives = 145/252 (57%)
Query: 269 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 328
E+ R Q Q L K R VG + + +D +V +
Sbjct: 75 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 134
Query: 329 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 388
P C V L ++ + + +L + DPLV++M VEK P TY +GGLDNQI
Sbjct: 135 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQI 194
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448
+EIKE +ELP+ HPE ++ +GI PKGV+LYG PGTGKTLLA+AVA+ T TF+RV GSE
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSE 254
Query: 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLN 508
L+QK++G+G ++VRELF +A EHAPSI+F+ +QRTMLELLN
Sbjct: 255 LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 314
Query: 509 QLDGFEATKNIK 520
QLDGF++ ++K
Sbjct: 315 QLDGFDSRGDVK 326
Score = 289 (106.8 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 56/107 (52%), Positives = 76/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M + ++L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLIL 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 101 (40.6 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 394 DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 37 (18.1 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 17/94 (18%), Positives = 29/94 (30%)
Query: 146 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 205
E+ R Q Q L K R VG + + +D +V +
Sbjct: 75 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 134
Query: 206 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P C V L ++ + + +L + D
Sbjct: 135 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>CGD|CAL0005689 [details] [associations]
symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0045899 "positive regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
Length = 444
Score = 471 (170.9 bits), Expect = 3.0e-77, Sum P(3) = 3.0e-77
Identities = 100/209 (47%), Positives = 124/209 (59%)
Query: 312 KKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 371
K K ++ + KF RV + Y + LP ++DP V++M VE
Sbjct: 119 KSKYVINIKQIAKFVVGLGERLSPTDIEEGMRVGVDRHKYEIQLPLPPRIDPSVTMMTVE 178
Query: 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 431
+ PD TY VGG QI++++EV+ELP+ PE F LGI PKG+LLYGPPGTGKTL AR
Sbjct: 179 EKPDVTYSDVGGCKEQIEKLREVVELPLLSPERFVKLGIDPPKGILLYGPPGTGKTLCAR 238
Query: 432 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXX 491
AVA+ T+ TFIRV GSELVQK++GEG+RMVRELF MAR IIF
Sbjct: 239 AVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEVDAIGGARFDD 298
Query: 492 XXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+ QLDGF+ NIK
Sbjct: 299 GAGGDNEVQRTMLELITQLDGFDPRGNIK 327
Score = 280 (103.6 bits), Expect = 3.0e-77, Sum P(3) = 3.0e-77
Identities = 60/116 (51%), Positives = 81/116 (69%)
Query: 538 VTQED-FE-MAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595
+TQ D F+ KV+ ATNR + LDPALLRPGRIDRK+EF P+ E R +I RIHS+ M
Sbjct: 314 ITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKTM 373
Query: 596 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
++ + I I+ L P A+GAE++ VCTEAGM+A+R RR ++DF AV KV++
Sbjct: 374 SVEKDIRWELISRLCPNATGAELRSVCTEAGMFAIRARRKVANEKDFLKAVDKVIK 429
Score = 95 (38.5 bits), Expect = 7.3e-58, Sum P(3) = 7.3e-58
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+++L ++ VCTEAGM+A+R RR ++DF AV KVI
Sbjct: 382 ELISRLCPNATGAELRSVCTEAGMFAIRARRKVANEKDFLKAVDKVI 428
Score = 58 (25.5 bits), Expect = 3.0e-77, Sum P(3) = 3.0e-77
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 87 KENKEKLQNANEGEMDVDEAY---TY-----EVERQ-RTVDEAIKSSEGFK 128
+E EK+ EG++ V + Y Y E+E+ +T++E IK+++G K
Sbjct: 16 EETSEKITPLTEGDIQVLKTYGTAPYADSLKEIEKDLKTIEERIKTNQGIK 66
Score = 39 (18.8 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 305 EVQRTMLELITQLDGFDP 322
>CGD|CAL0005257 [details] [associations]
symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045732 "positive regulation
of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
Length = 465
Score = 480 (174.0 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 91/218 (41%), Positives = 137/218 (62%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G + + +D +V ++ P C V L +++ + +L + D
Sbjct: 110 IGTLEEIIDDDHAIVSSTASSEYYVSIMSFVDKGLLEPGCSVLLHHKTVAVVGVLQDDAD 169
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
P+VS+M ++K P +Y +GGL++QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG P
Sbjct: 170 PMVSVMKLDKSPTESYADIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAP 229
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKTLLA+AVA+ T TF+R+ GSEL+QK++G+G R+ R++F +A +HAPSI+F+
Sbjct: 230 GTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFQIAADHAPSIVFIDEID 289
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF+ +IK
Sbjct: 290 AIGTKRYESTSGGEREIQRTMLELLNQLDGFDDRGDIK 327
Score = 283 (104.7 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 57/110 (51%), Positives = 77/110 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATN+I+ LDPAL+RPGRIDRKI F P+ + IL IH+ KM+L +NL +I
Sbjct: 327 KVIMATNKIESLDPALIRPGRIDRKILFENPDANTKKKILTIHTSKMSLADDVNLDEIVT 386
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
SGA++K +CTEAG+ ALRERR+ V EDF+ A +V++ E+N+
Sbjct: 387 GKDDLSGADIKAICTEAGLLALRERRMQVKAEDFKSAKERVLKNKVEENL 436
Score = 101 (40.6 bits), Expect = 4.5e-58, Sum P(3) = 4.5e-58
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID 558
+IK +CTEAG+ ALRERR+ V EDF+ A +V+ N+++
Sbjct: 395 DIKAICTEAGLLALRERRMQVKAEDFKSAKERVLK--NKVE 433
Score = 45 (20.9 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 22/86 (25%), Positives = 33/86 (38%)
Query: 185 KPMDKKKVLVKVHP--EGKFXXXXXXXXXXXXXTP----NCRVALRNESYTLHKILPNKM 238
K DKKK K P E KF P N R L+ L +I + +
Sbjct: 17 KKDDKKKEKPKYEPPVESKFGKKKRRGPDTAVKLPSVYPNTRCKLK--LLKLERIKDHLL 74
Query: 239 DVDEAIKSSEGFKPYYVTKIEELQLI 264
+E + + E F+P + EE + +
Sbjct: 75 LEEEFVTNQEAFQPTEARQAEEREKV 100
Score = 39 (18.8 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 238 MDVDEAIKSSEGFKPYYVT 256
+D D AI SS YYV+
Sbjct: 117 IDDDHAIVSSTASSEYYVS 135
>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
symbol:psmc1a "proteasome (prosome, macropain) 26S
subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
Length = 440
Score = 508 (183.9 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 111/273 (40%), Positives = 161/273 (58%)
Query: 248 EGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 307
E K Y + + EE + ++EQ ++ L+ ++ E +KV LR VG +
Sbjct: 66 ERIKDYLLME-EEF---IRDQEQ-MKPLEEKQEEERSKVDDLRGTPMS-------VGTLE 113
Query: 308 KPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSL 367
+ +D +V + P C V L ++ + + +L + DPLV++
Sbjct: 114 EIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTV 173
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M VEK P TY +GGLD+QI+EIKE +ELP+ HPE ++ +GI PKGV+LYG PGTGKT
Sbjct: 174 MKVEKAPQETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGAPGTGKT 233
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+
Sbjct: 234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK 293
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
Score = 286 (105.7 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 56/107 (52%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+E+ + I +IH+ +M + + L +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVADDVTLDDLIL 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT EDF+ + V+ K E
Sbjct: 386 AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432
Score = 102 (41.0 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 502 TMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ +L+ D +IK +CTEAG+ ALRERR+ VT EDF+ + V+
Sbjct: 379 TLDDLILAKDDLSGA-DIKAICTEAGLMALRERRMKVTNEDFKKSKENVL 427
Score = 38 (18.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 23/115 (20%), Positives = 45/115 (39%)
Query: 125 EGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 184
E K Y + + EE + ++EQ ++ L+ ++ E +KV LR VG +
Sbjct: 66 ERIKDYLLME-EEF---IRDQEQ-MKPLEEKQEEERSKVDDLRGTPMS-------VGTLE 113
Query: 185 KPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ +D +V + P C V L ++ + + +L + D
Sbjct: 114 EIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory
subunit 4, putative" species:5833 "Plasmodium falciparum"
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006508
"proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 516 (186.7 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 97/181 (53%), Positives = 133/181 (73%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P C V L N++ ++ IL ++VDPLVS+M VEK P +Y +GGL++QI+EIKE +ELP+
Sbjct: 154 PGCSVLLNNKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPL 213
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
HPEL++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 214 THPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPK 273
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VRE+F +A EHAPSI+F+ +QRTMLELLNQLDGF++ ++
Sbjct: 274 LVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDV 333
Query: 520 K 520
K
Sbjct: 334 K 334
Score = 269 (99.8 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 54/105 (51%), Positives = 73/105 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRID LDPAL+RPGRIDRKI+ P P+ + + I +IH+ KM ++ ++L +
Sbjct: 334 KVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVM 393
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM-QK 652
SGA++K +CTEAG+ ALRERR+ +TQ D A K + QK
Sbjct: 394 SKDELSGADIKAICTEAGLLALRERRMKITQADLRKARDKALFQK 438
Score = 94 (38.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+IK +CTEAG+ ALRERR+ +TQ D A K +
Sbjct: 402 DIKAICTEAGLLALRERRMKITQADLRKARDKAL 435
Score = 39 (18.8 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 217 PNCRVALRNESYTLHKILPNKMD 239
P C V L N++ ++ IL +++D
Sbjct: 154 PGCSVLLNNKTNSVVGILLDEVD 176
>UNIPROTKB|Q8IJW0 [details] [associations]
symbol:PF10_0081 "26S proteasome regulatory subunit 4,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
Length = 448
Score = 516 (186.7 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 97/181 (53%), Positives = 133/181 (73%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P C V L N++ ++ IL ++VDPLVS+M VEK P +Y +GGL++QI+EIKE +ELP+
Sbjct: 154 PGCSVLLNNKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPL 213
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
HPEL++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 214 THPELYEDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPK 273
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VRE+F +A EHAPSI+F+ +QRTMLELLNQLDGF++ ++
Sbjct: 274 LVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDV 333
Query: 520 K 520
K
Sbjct: 334 K 334
Score = 269 (99.8 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 54/105 (51%), Positives = 73/105 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRID LDPAL+RPGRIDRKI+ P P+ + + I +IH+ KM ++ ++L +
Sbjct: 334 KVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVM 393
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM-QK 652
SGA++K +CTEAG+ ALRERR+ +TQ D A K + QK
Sbjct: 394 SKDELSGADIKAICTEAGLLALRERRMKITQADLRKARDKALFQK 438
Score = 94 (38.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+IK +CTEAG+ ALRERR+ +TQ D A K +
Sbjct: 402 DIKAICTEAGLLALRERRMKITQADLRKARDKAL 435
Score = 39 (18.8 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 217 PNCRVALRNESYTLHKILPNKMD 239
P C V L N++ ++ IL +++D
Sbjct: 154 PGCSVLLNNKTNSVVGILLDEVD 176
>TAIR|locus:2024822 [details] [associations]
symbol:RPT1A "regulatory particle triple-A 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
Length = 426
Score = 483 (175.1 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 103/217 (47%), Positives = 130/217 (59%)
Query: 305 EVVKP-MDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDP 363
+++ P + K ++ V KF RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423
V++M VE+ PD TY VGG QI++++EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212
Query: 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXX 483
TGKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR I+F
Sbjct: 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272
Query: 484 XXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLE++NQLDGF+A NIK
Sbjct: 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309
Score = 301 (111.0 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPALLRPGR+DRK+EF P+ E+R I +IH+R MN R I +A
Sbjct: 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLAR 368
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GA+++ VCTEAGMYA+R RR VT++DF AV KV++
Sbjct: 369 LCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIK 411
Score = 110 (43.8 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
ELL +L +I+ VCTEAGMYA+R RR VT++DF AV KVI
Sbjct: 364 ELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVI 410
Score = 39 (18.8 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 15/72 (20%), Positives = 26/72 (36%)
Query: 182 EVVKP-MDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDV 240
+++ P + K ++ V KF RV + Y + LP K+D
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 241 DEAIKSSEGFKP 252
+ + E KP
Sbjct: 153 SVTMMTVEE-KP 163
>TAIR|locus:2119926 [details] [associations]
symbol:RPT2a "regulatory particle AAA-ATPase 2A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0009933 "meristem structural organization" evidence=IMP]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
meristem identity" evidence=IMP] [GO:0010311 "lateral root
formation" evidence=IMP] [GO:0035266 "meristem growth"
evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
cap development" evidence=IMP] [GO:0046686 "response to cadmium
ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
[GO:0009408 "response to heat" evidence=IMP] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
[GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
[GO:0090351 "seedling development" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0009853
"photorespiration" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0051510 "regulation of
unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
GO:GO:0035266 Uniprot:Q9SZD4
Length = 443
Score = 484 (175.4 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 104/264 (39%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
+I++ L+ E N RL+ Q K R VG + + +D+ +
Sbjct: 70 RIKDYLLMEEEFVANQERLKPQEE----KAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V ++ P C + + N+ ++ IL ++VDP+VS+M VEK P
Sbjct: 126 VSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLE 185
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 245
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+
Sbjct: 246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 305
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVK 329
Score = 299 (110.3 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 61/107 (57%), Positives = 76/107 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI+ATNRI+ LDPALLRPGRIDRKIEFP P+ + R I +IH+ KM L+ +NL +
Sbjct: 329 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVM 388
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT DF+ A KVM K E
Sbjct: 389 TKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKE 435
Score = 104 (41.7 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
E + D F +IK +CTEAG+ ALRERR+ VT DF+ A KV+
Sbjct: 385 EFVMTKDEFSGA-DIKAICTEAGLLALRERRMKVTHPDFKKAKEKVM 430
Score = 40 (19.1 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 19/106 (17%), Positives = 39/106 (36%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
+I++ L+ E N RL+ Q K R VG + + +D+ +
Sbjct: 70 RIKDYLLMEEEFVANQERLKPQEE----KAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V ++ P C + + N+ ++ IL +++D
Sbjct: 126 VSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVD 171
>ZFIN|ZDB-GENE-030131-304 [details] [associations]
symbol:psmc6 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
Uniprot:Q6DRD2
Length = 389
Score = 492 (178.3 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 103/254 (40%), Positives = 142/254 (55%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGSVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 290 (107.1 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 62/108 (57%), Positives = 77/108 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IHS + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R +VTQEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLRNVCTEAGMFAIRADHEYVTQEDFMKAVRKVA--DSKK 379
Score = 107 (42.7 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R +VTQEDF AV KV
Sbjct: 336 DGFNGA-DLRNVCTEAGMFAIRADHEYVTQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>TAIR|locus:2061639 [details] [associations]
symbol:RPT2b "regulatory particle AAA-ATPase 2b"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
"female gamete generation" evidence=IGI] [GO:0010078 "maintenance
of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
Length = 443
Score = 484 (175.4 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 104/264 (39%), Positives = 154/264 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
+I++ L+ E N RL+ Q K R VG + + +D+ +
Sbjct: 70 RIKDYLLMEEEFVANQERLKPQEE----KAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
V ++ P C + + N+ ++ IL ++VDP+VS+M VEK P
Sbjct: 126 VSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLE 185
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 245
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+
Sbjct: 246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGE 305
Query: 497 XXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVK 329
Score = 297 (109.6 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 61/107 (57%), Positives = 75/107 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI+ATNRI+ LDPALLRPGRIDRKIEFP P+ + R I +IH+ KM L +NL +
Sbjct: 329 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVM 388
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRERR+ VT DF+ A KVM K E
Sbjct: 389 TKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKE 435
Score = 104 (41.7 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 502 TMLELLNQLDGFEATKN------IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
T+ E +N L+ F TK+ IK +CTEAG+ ALRERR+ VT DF+ A KV+
Sbjct: 376 TLAEDVN-LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVM 430
Score = 40 (19.1 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 19/106 (17%), Positives = 39/106 (36%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
+I++ L+ E N RL+ Q K R VG + + +D+ +
Sbjct: 70 RIKDYLLMEEEFVANQERLKPQEE----KAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V ++ P C + + N+ ++ IL +++D
Sbjct: 126 VSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVD 171
>TAIR|locus:2159996 [details] [associations]
symbol:RPT4A "regulatory particle triple-A ATPase 4A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
Length = 399
Score = 496 (179.7 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 108/285 (37%), Positives = 163/285 (57%)
Query: 239 DVDEAIKSSEGFKPYYVTKI---EELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 295
DVDE+++ Y K+ +EL+ V +NLR + + N+ ++ L+
Sbjct: 3 DVDESVRRRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSV--- 59
Query: 296 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 355
G +GEV++P+D ++++VK ++ T RV L + T+ +
Sbjct: 60 ----GQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMR 115
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
LP +VDP+V M+ E + +Y VGGL +QI+E++E IELP+ +PELF +GI PKG
Sbjct: 116 ALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKG 175
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLLYGPPGTGKTLLARA+A + + F++V S ++ K+IGE +R++RE+F AREH P I
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCI 235
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IFM +QRT++ELLNQLDGF+ +K
Sbjct: 236 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVK 280
Score = 284 (105.0 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 55/103 (53%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D+LDPALLRPGR+DRKIE P PNE++R+DIL+IH+ + I+ I +
Sbjct: 280 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVK 339
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L G +GA+++ +CTEAGM+A+R R +V EDF AV K+ +
Sbjct: 340 LAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSE 382
Score = 95 (38.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 29/126 (23%), Positives = 57/126 (45%)
Query: 117 VDEAIKSSEGFKPYYVTKI---EELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXX 173
VDE+++ Y K+ +EL+ V +NLR + + N+ ++ L+
Sbjct: 4 VDESVRRRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSV---- 59
Query: 174 XXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKI 233
G +GEV++P+D ++++VK ++ T RV L + T+ +
Sbjct: 60 ---GQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRA 116
Query: 234 LPNKMD 239
LP ++D
Sbjct: 117 LPREVD 122
Score = 94 (38.1 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+GF +++ +CTEAGM+A+R R +V EDF AV K+
Sbjct: 342 EGFNGA-DLRNICTEAGMFAIRAERDYVIHEDFMKAVRKL 380
>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
symbol:PF13_0033 "26S proteasome regulatory
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
Length = 393
Score = 475 (172.3 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 107/281 (38%), Positives = 156/281 (55%)
Query: 246 SSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 305
+ E K YV K+ E + E E +++L+ ELN K G +G+
Sbjct: 3 NKESIK-LYVKKVIEHR----EIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQ 57
Query: 306 VVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLV 365
V+K ++ +K +VK ++ RV+L + T+ K LP +VDPLV
Sbjct: 58 VLKQLEDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVDPLV 117
Query: 366 SLMM--VEKVPDST----YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
M+ ++K +ST Y +GGL QI++++EV+ELP+ +P L+ +GI PKGVLLY
Sbjct: 118 FNMISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLY 177
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPGTGKTLLARA+A + C F+R+ S +V K+IGE +R++RE+F A+EH P IIFM
Sbjct: 178 GPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMD 237
Query: 480 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRT++ELLN LDGFE N+K
Sbjct: 238 EIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVK 278
Score = 302 (111.4 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 59/121 (48%), Positives = 83/121 (68%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINL 603
E+ K+IMATNR D+LDPAL+RPGR+DRKIE P PNE AR++IL+IH+ KM I+
Sbjct: 273 ELGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDY 332
Query: 604 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKK 662
+ L G +GA+++ VCTEAGM+A+R R +V +EDF A K+ + K E + +K
Sbjct: 333 ESVCRLCDGFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKISEGKKLEGKIEYEK 392
Query: 663 L 663
+
Sbjct: 393 I 393
Score = 98 (39.6 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R R +V +EDF A K+
Sbjct: 340 DGFNGA-DLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKI 378
Score = 84 (34.6 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 123 SSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 182
+ E K YV K+ E + E E +++L+ ELN K G +G+
Sbjct: 3 NKESIK-LYVKKVIEHR----EIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQ 57
Query: 183 VVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V+K ++ +K +VK ++ RV+L + T+ K LP ++D
Sbjct: 58 VLKQLEDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVD 114
>UNIPROTKB|Q8IEQ1 [details] [associations]
symbol:PF13_0033 "26S proteasome regulatory subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
Length = 393
Score = 475 (172.3 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 107/281 (38%), Positives = 156/281 (55%)
Query: 246 SSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 305
+ E K YV K+ E + E E +++L+ ELN K G +G+
Sbjct: 3 NKESIK-LYVKKVIEHR----EIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQ 57
Query: 306 VVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLV 365
V+K ++ +K +VK ++ RV+L + T+ K LP +VDPLV
Sbjct: 58 VLKQLEDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVDPLV 117
Query: 366 SLMM--VEKVPDST----YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
M+ ++K +ST Y +GGL QI++++EV+ELP+ +P L+ +GI PKGVLLY
Sbjct: 118 FNMISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLY 177
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPGTGKTLLARA+A + C F+R+ S +V K+IGE +R++RE+F A+EH P IIFM
Sbjct: 178 GPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMD 237
Query: 480 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRT++ELLN LDGFE N+K
Sbjct: 238 EIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVK 278
Score = 302 (111.4 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 59/121 (48%), Positives = 83/121 (68%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINL 603
E+ K+IMATNR D+LDPAL+RPGR+DRKIE P PNE AR++IL+IH+ KM I+
Sbjct: 273 ELGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDY 332
Query: 604 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKK 662
+ L G +GA+++ VCTEAGM+A+R R +V +EDF A K+ + K E + +K
Sbjct: 333 ESVCRLCDGFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKISEGKKLEGKIEYEK 392
Query: 663 L 663
+
Sbjct: 393 I 393
Score = 98 (39.6 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R R +V +EDF A K+
Sbjct: 340 DGFNGA-DLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKI 378
Score = 84 (34.6 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 123 SSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 182
+ E K YV K+ E + E E +++L+ ELN K G +G+
Sbjct: 3 NKESIK-LYVKKVIEHR----EIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQ 57
Query: 183 VVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V+K ++ +K +VK ++ RV+L + T+ K LP ++D
Sbjct: 58 VLKQLEDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVD 114
>UNIPROTKB|Q5R8D7 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
Uniprot:Q5R8D7
Length = 433
Score = 480 (174.0 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 296 (109.3 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 58/103 (56%), Positives = 77/103 (74%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R IL+IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 45 (20.9 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 32/153 (20%), Positives = 55/153 (35%)
Query: 87 KENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKE 146
K++K ++ +EG++ + + Y Q T IK E + KI EL I KE
Sbjct: 17 KDDKP-IRALDEGDIALLKTYG-----QSTYSRQIKQVEDDIQQLLKKINELTGI---KE 67
Query: 147 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXX 206
+ +L A + L+ + + + + K ++ V KF
Sbjct: 68 SDTGLAPPALWDLAADKQTLQSEQPLQVARCTKI--ITADSEDPKYIINVKQFAKFVVDL 125
Query: 207 XXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV + Y +H LP K+D
Sbjct: 126 SDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|F1NCS8 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
Uniprot:F1NCS8
Length = 403
Score = 498 (180.4 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 104/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 35 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 94
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E D +Y +GGL
Sbjct: 95 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVSYSEIGGLSE 154
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 155 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 214
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 215 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 274
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 275 LNQMDGFDTLHRVK 288
Score = 277 (102.6 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 288 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 347
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 348 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 393
Score = 98 (39.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 350 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 388
Score = 86 (35.3 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 35 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 94
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 95 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 130
Score = 37 (18.1 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 259 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 289
>UNIPROTKB|Q5ZKX2 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
Uniprot:Q5ZKX2
Length = 389
Score = 498 (180.4 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 104/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E D +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 277 (102.6 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 379
Score = 98 (39.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 336 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>FB|FBgn0028687 [details] [associations]
symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
Length = 433
Score = 484 (175.4 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 102/210 (48%), Positives = 124/210 (59%)
Query: 311 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMV 370
D K ++ V KF RV + Y +H LP K+DP V++M V
Sbjct: 107 DDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQV 166
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL A
Sbjct: 167 EDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCA 226
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 227 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFD 286
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 287 DGAGGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 290 (107.1 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 55/103 (53%), Positives = 77/103 (74%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRK+EF P+++ R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVIK 418
Score = 101 (40.6 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + +LL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVKKVI 417
Score = 59 (25.8 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 34/153 (22%), Positives = 61/153 (39%)
Query: 87 KENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKE 146
KE+KE +++ +EG++++ + Y Q ++IKS E V ++ EL I KE
Sbjct: 17 KEDKE-IKSLDEGDIELLKTYG-----QSQYHKSIKSIEEDIQKAVKQVNELTGI---KE 67
Query: 147 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXX 206
+ +L A ++L+ + + + D K ++ V KF
Sbjct: 68 SDTGLAPPALWDLAADKQILQNEQPLQVARCTKI--INADSDDPKYIINVKQFAKFVVDL 125
Query: 207 XXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV + Y +H LP K+D
Sbjct: 126 ADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|F1NFL8 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
Uniprot:F1NFL8
Length = 432
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 109 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 168
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 169 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 228
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 229 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 288
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 289 GGDNEVQRTMLELINQLDGFDPRGNIK 315
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 315 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 374
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 375 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 417
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 363 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 416
Score = 56 (24.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 37/165 (22%), Positives = 60/165 (36%)
Query: 76 EILTAFHKIIRKENKE-KLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTK 134
+ L A H ++E KE K + +EG++ + + Y Q T IK E + K
Sbjct: 3 DYLGADHGKTKEEEKEDKHSSLDEGDIALLKTYG-----QSTYSRQIKQVEDDIQQLLKK 57
Query: 135 IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLV 194
I EL I KE + +L A + L+ + + + + K ++
Sbjct: 58 INELTGI---KESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKI--INADSEDPKYII 112
Query: 195 KVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
V KF RV + Y +H LP K+D
Sbjct: 113 NVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 157
Score = 40 (19.1 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 293 EVQRTMLELINQLDGFDP 310
>UNIPROTKB|P46472 [details] [associations]
symbol:psmc2 "26S protease regulatory subunit 7"
species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
Uniprot:P46472
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVI 417
Score = 50 (22.7 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 35/166 (21%), Positives = 61/166 (36%)
Query: 76 EILTAFHKIIRKENKEK--LQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVT 133
+ L A + ++E KE +++ +EG++ + + Y Q T IK E +
Sbjct: 3 DYLGADQRKTKEEEKEDKPIRSLDEGDIALLKTYG-----QSTYSRQIKQVEDDIQQLLK 57
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
KI EL I KE + +L A + L+ + + + + K +
Sbjct: 58 KINELTGI---KESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKI--INADSEDPKYI 112
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ V KF RV + Y +H LP K+D
Sbjct: 113 INVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
symbol:psmc2 "proteasome (prosome, macropain) 26S
subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 50 (22.7 bits), Expect = 8.0e-25, Sum P(2) = 8.0e-25
Identities = 34/162 (20%), Positives = 59/162 (36%)
Query: 79 TAFHKIIRKENKEK-LQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEE 137
T K+ +E ++K ++ +EG++ + + Y Q T IK E + KI E
Sbjct: 7 TEQRKVKEEEKEDKPIRALDEGDIALLKTYG-----QSTYSRQIKQVEDDIQQLLKKINE 61
Query: 138 LQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 197
L I KE + +L A + L+ + + + + K ++ V
Sbjct: 62 LTGI---KESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKI--INADSEDPKYIINVK 116
Query: 198 PEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
KF RV + Y +H LP K+D
Sbjct: 117 QFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|I3LJ30 [details] [associations]
symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
Length = 434
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 111 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 170
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 171 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 230
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 231 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 290
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 291 GGDNEVQRTMLELINQLDGFDPRGNIK 317
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 317 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 376
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 377 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 419
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 365 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 418
Score = 47 (21.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 33/150 (22%), Positives = 53/150 (35%)
Query: 90 KEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNL 149
KE L+ +EG++ + + Y Q T IK E + KI EL I KE +
Sbjct: 20 KELLRALDEGDIALLKTYG-----QSTYSRQIKQVEDDIQQLLKKINELTGI---KESDT 71
Query: 150 RRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXX 209
+L + + LR + + + + K ++ V KF
Sbjct: 72 GLAPPALWDLAYENQELRSNQAFCRVRCTKI--INADSEDPKYIINVKQFAKFVVDLSDQ 129
Query: 210 XXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV + Y +H LP K+D
Sbjct: 130 VAPTDIEEGMRVGVDRNKYQIHIPLPPKID 159
Score = 40 (19.1 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 295 EVQRTMLELINQLDGFDP 312
>UNIPROTKB|E1C4V5 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
Length = 424
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 101 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 160
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 161 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 220
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 221 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 280
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 281 GGDNEVQRTMLELINQLDGFDPRGNIK 307
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 307 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 366
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 367 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 409
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 355 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 408
Score = 45 (20.9 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 31/154 (20%), Positives = 53/154 (34%)
Query: 86 RKENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEK 145
R+ + + +EG++ + + Y Q T IK E + KI EL I K
Sbjct: 6 RRRRRTNIPALDEGDIALLKTYG-----QSTYSRQIKQVEDDIQQLLKKINELTGI---K 57
Query: 146 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 205
E + +L A + L+ + + + + K ++ V KF
Sbjct: 58 ESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKI--INADSEDPKYIINVKQFAKFVVD 115
Query: 206 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV + Y +H LP K+D
Sbjct: 116 LSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 149
Score = 40 (19.1 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 285 EVQRTMLELINQLDGFDP 302
>MGI|MGI:109555 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
Uniprot:P46471
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 45 (20.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 31/154 (20%), Positives = 51/154 (33%)
Query: 86 RKENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEK 145
RK +E+ + +D + + Q T IK E + KI EL I K
Sbjct: 10 RKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGI---K 66
Query: 146 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 205
E + +L A + L+ + + + + K ++ V KF
Sbjct: 67 ESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKI--INADSEDPKYIINVKQFAKFVVD 124
Query: 206 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV + Y +H LP K+D
Sbjct: 125 LSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|Q5E9F9 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
Uniprot:Q5E9F9
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|F1PPH7 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
Uniprot:F1PPH7
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|P35998 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|F1SB53 [details] [associations]
symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
Length = 475
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 152 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 211
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 212 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 271
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 272 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 331
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 332 GGDNEVQRTMLELINQLDGFDPRGNIK 358
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 358 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 417
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 418 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 460
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 406 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 459
Score = 44 (20.5 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 152 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 200
Score = 40 (19.1 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 336 EVQRTMLELINQLDGFDP 353
>UNIPROTKB|Q4R4R0 [details] [associations]
symbol:PSMC2 "26S protease regulatory subunit 7"
species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
Uniprot:Q4R4R0
Length = 433
Score = 480 (174.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 101/207 (48%), Positives = 124/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>DICTYBASE|DDB_G0270784 [details] [associations]
symbol:psmC1 "TAT binding protein alpha"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
Uniprot:Q55BV5
Length = 439
Score = 477 (173.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 90/177 (50%), Positives = 127/177 (71%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
V L N++ ++ ++ +VDP+V++M VEK P +Y +GGL+ Q++E+KE IELP+ HPE
Sbjct: 149 VLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPE 208
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
L++ +GI PKGV+LYG PGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G ++VRE
Sbjct: 209 LYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
LF +A E APSI+F+ +QRTMLELLNQLDGF+A ++K
Sbjct: 269 LFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVK 325
Score = 295 (108.9 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 57/104 (54%), Positives = 75/104 (72%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI+ LDPAL+RPGRIDRKIEFP P+ + + I IH+ KMNL+ +NL +
Sbjct: 325 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVM 384
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
SGA++K +CTE+G+ ALRERR+ VT DF+ A KV+ +
Sbjct: 385 SKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYR 428
Score = 101 (40.6 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+IK +CTE+G+ ALRERR+ VT DF+ A KV+
Sbjct: 393 DIKAICTESGLLALRERRMRVTHTDFKKAKEKVL 426
>UNIPROTKB|F1MLV1 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
Length = 389
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 379
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 336 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>UNIPROTKB|J9P1N0 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
Uniprot:J9P1N0
Length = 395
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 27 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 86
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 87 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 146
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 147 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 206
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 207 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 266
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 267 LNQMDGFDTLHRVK 280
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 280 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 339
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 340 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 385
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 342 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 380
Score = 86 (35.3 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 27 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 86
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 87 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 122
Score = 37 (18.1 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 251 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 281
>UNIPROTKB|P62333 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0022624 "proteasome accessory complex" evidence=ISS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
Uniprot:P62333
Length = 389
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 379
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 336 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>UNIPROTKB|F1SFE6 [details] [associations]
symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
ArrayExpress:F1SFE6 Uniprot:F1SFE6
Length = 403
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 35 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 94
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 95 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 154
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 155 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 214
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 215 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 274
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 275 LNQMDGFDTLHRVK 288
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 288 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 347
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 348 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 393
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 350 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 388
Score = 86 (35.3 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 35 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 94
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 95 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 130
Score = 37 (18.1 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 259 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 289
>UNIPROTKB|P62335 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:43179 "Spermophilus tridecemlineatus" [GO:0022624
"proteasome accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
Length = 389
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 379
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 336 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>MGI|MGI:1914339 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
GermOnline:ENSMUSG00000021832 Uniprot:P62334
Length = 389
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 379
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 336 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 7.8e-28, Sum P(2) = 7.8e-28
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>RGD|1308825 [details] [associations]
symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
Uniprot:Q32PW9
Length = 381
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 13 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 72
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 73 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 132
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 133 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 192
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 193 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 252
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 253 LNQMDGFDTLHRVK 266
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 266 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 325
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 326 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 371
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 328 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 366
Score = 86 (35.3 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 13 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 72
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 73 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 108
Score = 37 (18.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 237 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 267
>RGD|2318218 [details] [associations]
symbol:LOC100365869 "proteasome (prosome, macropain) 26S
subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
Length = 403
Score = 493 (178.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 35 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 94
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 95 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 154
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 155 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 214
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 215 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 274
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 275 LNQMDGFDTLHRVK 288
Score = 277 (102.6 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 288 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 347
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA+++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 348 LSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 393
Score = 98 (39.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 350 DGFNGA-DLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 388
Score = 86 (35.3 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 35 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 94
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 95 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 130
Score = 37 (18.1 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 259 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 289
>UNIPROTKB|B7Z5E2 [details] [associations]
symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
Uniprot:B7Z5E2
Length = 296
Score = 475 (172.3 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 97/178 (54%), Positives = 118/178 (66%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
RV + Y +H LP K+DP V++M VE+ PD TY VGG QI++++EV+E P+ HP
Sbjct: 2 RVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHP 61
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVR 462
E F LGI PKGVLL+GPPGTGKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVR
Sbjct: 62 ERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVR 121
Query: 463 ELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
ELF MAR +IF VQRTMLEL+NQLDGF+ NIK
Sbjct: 122 ELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 179
Score = 292 (107.8 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 179 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 238
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 239 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 281
Score = 40 (19.1 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 157 EVQRTMLELINQLDGFDP 174
Score = 39 (18.8 bits), Expect = 9.1e-27, Sum P(2) = 9.1e-27
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 220 RVALRNESYTLHKILPNKMD 239
RV + Y +H LP K+D
Sbjct: 2 RVGVDRNKYQIHIPLPPKID 21
>UNIPROTKB|Q2KIW6 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
Length = 389
Score = 493 (178.6 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 103/254 (40%), Positives = 143/254 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F AR+H P IIFM +QRT++EL
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 260
Query: 507 LNQLDGFEATKNIK 520
LNQ+DGF+ +K
Sbjct: 261 LNQMDGFDTLHRVK 274
Score = 273 (101.2 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 60/108 (55%), Positives = 74/108 (68%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLRPGR+DRKI PNE+ARLDIL+IH+ + I+ I +
Sbjct: 274 KMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVK 333
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L G +GA++ VCTEAGM+A+R V QEDF AV KV DS+K
Sbjct: 334 LSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKVA--DSKK 379
Score = 94 (38.1 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF ++ VCTEAGM+A+R V QEDF AV KV
Sbjct: 336 DGFNGA-DLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374
Score = 86 (35.3 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
P RVAL + T+ + LP ++D
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116
Score = 37 (18.1 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF + K+
Sbjct: 245 EGTSADREIQRTLMELLNQMDGFDTLHRVKM 275
>TAIR|locus:2028200 [details] [associations]
symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
"cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
vesicle transport" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
Uniprot:Q9MAK9
Length = 399
Score = 486 (176.1 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 107/285 (37%), Positives = 161/285 (56%)
Query: 239 DVDEAIKSSEGFKPYYVTKI---EELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 295
D D+A + Y K+ +EL+ V +NLR + + N+ ++ L+
Sbjct: 3 DGDDAARRRTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSV--- 59
Query: 296 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 355
G +GEV++P+D ++++VK ++ T RV L + T+ +
Sbjct: 60 ----GQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMR 115
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
LP +VDP+V M+ E + +Y VGGL +QI+E++E IELP+ +PELF +GI PKG
Sbjct: 116 ALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKG 175
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLLYGPPGTGKTLLARA+A + + F++V S ++ K+IGE +R++RE+F AREH P I
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCI 235
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IFM +QRT++ELLNQLDGF+ +K
Sbjct: 236 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 280
Score = 280 (103.6 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 54/108 (50%), Positives = 78/108 (72%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINL 603
++ K+IMATNR D+LDPALLRPGR+DRKIE P PNE++R++IL+IH+ + I+
Sbjct: 275 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDY 334
Query: 604 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
I +L G +GA+++ +CTEAGM+A+R R +V EDF AV K+ +
Sbjct: 335 EAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSE 382
Score = 94 (38.1 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+GF +++ +CTEAGM+A+R R +V EDF AV K+
Sbjct: 342 EGFNGA-DLRNICTEAGMFAIRAERDYVIHEDFMKAVRKL 380
Score = 88 (36.0 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 24/104 (23%), Positives = 48/104 (46%)
Query: 136 EELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 195
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 196 VHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
++ T RV L + T+ + LP ++D
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVD 122
>WB|WBGene00004501 [details] [associations]
symbol:rpt-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
Length = 435
Score = 482 (174.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 101/207 (48%), Positives = 125/207 (60%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
+ L+ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEK 171
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG +QI++++EV+E P+ HPE + LGI PKGVLLYGPPGTGKTL ARAV
Sbjct: 172 PDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAV 231
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 232 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQ 291
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 292 GGDNEVQRTMLELINQLDGFDPRGNIK 318
Score = 283 (104.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 54/103 (52%), Positives = 77/103 (74%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRK+EF P+ R IL+IH+++M++ R I +A
Sbjct: 318 KVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLAR 377
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF A+ KV++
Sbjct: 378 LCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420
Score = 97 (39.2 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + +LL +L I+ VCTEAGM+A+R RR T++DF A+ KV+
Sbjct: 366 VERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVV 419
Score = 45 (20.9 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ L+ V KF RV + Y +H LP K+D
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKID 160
Score = 41 (19.5 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 104 DEAYTYEVERQRTVDEAIKSSEGFKP 129
D+ + E QRT+ E I +GF P
Sbjct: 288 DDGQGGDNEVQRTMLELINQLDGFDP 313
>UNIPROTKB|Q18787 [details] [associations]
symbol:rpt-1 "26S protease regulatory subunit 7"
species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
NextBio:906264 Uniprot:Q18787
Length = 435
Score = 482 (174.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 101/207 (48%), Positives = 125/207 (60%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
+ L+ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEK 171
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG +QI++++EV+E P+ HPE + LGI PKGVLLYGPPGTGKTL ARAV
Sbjct: 172 PDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAV 231
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FIRV GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 232 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQ 291
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 292 GGDNEVQRTMLELINQLDGFDPRGNIK 318
Score = 283 (104.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 54/103 (52%), Positives = 77/103 (74%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRK+EF P+ R IL+IH+++M++ R I +A
Sbjct: 318 KVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLAR 377
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF A+ KV++
Sbjct: 378 LCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420
Score = 97 (39.2 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + +LL +L I+ VCTEAGM+A+R RR T++DF A+ KV+
Sbjct: 366 VERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVV 419
Score = 45 (20.9 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ L+ V KF RV + Y +H LP K+D
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKID 160
Score = 41 (19.5 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 104 DEAYTYEVERQRTVDEAIKSSEGFKP 129
D+ + E QRT+ E I +GF P
Sbjct: 288 DDGQGGDNEVQRTMLELINQLDGFDP 313
>RGD|3428 [details] [associations]
symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
GermOnline:ENSRNOG00000012026 Uniprot:Q63347
Length = 433
Score = 473 (171.6 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 100/207 (48%), Positives = 123/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FI V GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>UNIPROTKB|Q63347 [details] [associations]
symbol:Psmc2 "26S protease regulatory subunit 7"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
Uniprot:Q63347
Length = 433
Score = 473 (171.6 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 100/207 (48%), Positives = 123/207 (59%)
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
K ++ V KF RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T+ FI V GSELVQK++GEG+RMVRELF MAR +IF
Sbjct: 230 ANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIK 316
Score = 292 (107.8 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPAL+RPGR+DRKIEF P+ E R I +IH+R M++ R I +A
Sbjct: 316 KVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLAR 375
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV++
Sbjct: 376 LCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418
Score = 103 (41.3 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 499 VQRTM-LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
V+R + ELL +L I+ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 364 VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVI 417
Score = 44 (20.5 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 191 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
K ++ V KF RV + Y +H LP K+D
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKID 158
Score = 40 (19.1 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 294 EVQRTMLELINQLDGFDP 311
>POMBASE|SPBC4.07c [details] [associations]
symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IC] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
Uniprot:P36612
Length = 448
Score = 485 (175.8 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 102/265 (38%), Positives = 156/265 (58%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 376
PE + P C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
+Y +GGL++QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 248
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
T TF+RV GSEL+QK++G+G R+VR+LF A EH+PSI+F+
Sbjct: 249 TSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAE 308
Query: 497 XXVQRTMLELLNQLDGFEAT-KNIK 520
+QRTMLELLNQLDGF+ + ++IK
Sbjct: 309 REIQRTMLELLNQLDGFDTSQRDIK 333
Score = 276 (102.2 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 56/107 (52%), Positives = 72/107 (67%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI LDPAL+RPGRIDRKI F P+E + I IH+ KMNL +NL ++ +
Sbjct: 333 KVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQ 392
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGAE+K + +EAG+ ALRERR+ V +DF A KV++ E
Sbjct: 393 CKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDE 439
Score = 89 (36.4 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+ D + IK + +EAG+ ALRERR+ V +DF A KV+
Sbjct: 389 ELIQCKDDLSGAE-IKAIVSEAGLLALRERRMRVVMDDFRQAREKVL 434
>UNIPROTKB|J9NWA6 [details] [associations]
symbol:LOC100687152 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
Uniprot:J9NWA6
Length = 434
Score = 438 (159.2 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 142 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 201
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 202 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 261
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 262 LVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 321
Query: 520 K 520
K
Sbjct: 322 K 322
Score = 296 (109.3 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 58/104 (55%), Positives = 74/104 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+D+KIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 322 KVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 381
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
M +GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 382 CMDDFNGAQCKAVCVEAGMIALRRGTTELTHEDYMEGILEVQAK 425
Score = 79 (32.9 bits), Expect = 9.3e-51, Sum P(3) = 9.3e-51
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL +D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 378 ELARCMDDFNGAQ-CKAVCVEAGMIALRRGTTELTHEDYMEGILEV 422
Score = 45 (20.9 bits), Expect = 7.2e-25, Sum P(2) = 7.2e-25
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 281 DELDATGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 323
Score = 39 (18.8 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 29/154 (18%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYEV-ERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E+ +R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 25 GE-EVLKMSTEEIIQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 80
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 81 LPYLVSNVIELLDVHPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 139
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 140 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 171
Score = 37 (18.1 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V P+ E LD+Q K VI+ +
Sbjct: 67 KIKENSEKIKVNKTLPYLVSNVIELLDVH--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 124
Query: 401 HPELFDALGI 410
+G+
Sbjct: 125 QTYFLPVIGL 134
>WB|WBGene00004504 [details] [associations]
symbol:rpt-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 477 (173.0 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 100/252 (39%), Positives = 144/252 (57%)
Query: 269 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 328
EQ L+ L+ + +E+ + G VGEV+K + ++K +VK ++
Sbjct: 40 EQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVG 99
Query: 329 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 388
RV+L + T+ + LP +VDPLV M E + +Y VGGL QI
Sbjct: 100 CRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQI 159
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448
+E++EV+ELP+ +PELF +GI PKG LL+GPPGTGKTLLARAVA +C F++V S
Sbjct: 160 RELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSA 219
Query: 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLN 508
+V K+IGE +RM+RE+F AR+H P I+FM +QRT++ELLN
Sbjct: 220 IVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 279
Query: 509 QLDGFEATKNIK 520
QLDGF++ +K
Sbjct: 280 QLDGFDSLGKVK 291
Score = 283 (104.7 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 58/101 (57%), Positives = 72/101 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNR D LDPALLRPGR+DRKIE PNE++RL+IL+IHS K+ I+ + +
Sbjct: 291 KVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVK 350
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649
L G S A+++ VCTEAGM+A+R R V EDF AV KV
Sbjct: 351 LSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391
Score = 104 (41.7 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF A +++ VCTEAGM+A+R R V EDF AV KV
Sbjct: 353 DGFSAA-DLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391
Score = 75 (31.5 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 146 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 205
EQ L+ L+ + +E+ + G VGEV+K + ++K +VK ++
Sbjct: 40 EQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVG 99
Query: 206 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV+L + T+ + LP ++D
Sbjct: 100 CRRSINKEELKQGTRVSLDMTTLTIMRQLPREVD 133
>UNIPROTKB|O17071 [details] [associations]
symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
Length = 406
Score = 477 (173.0 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 100/252 (39%), Positives = 144/252 (57%)
Query: 269 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 328
EQ L+ L+ + +E+ + G VGEV+K + ++K +VK ++
Sbjct: 40 EQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVG 99
Query: 329 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 388
RV+L + T+ + LP +VDPLV M E + +Y VGGL QI
Sbjct: 100 CRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQI 159
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 448
+E++EV+ELP+ +PELF +GI PKG LL+GPPGTGKTLLARAVA +C F++V S
Sbjct: 160 RELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSA 219
Query: 449 LVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLN 508
+V K+IGE +RM+RE+F AR+H P I+FM +QRT++ELLN
Sbjct: 220 IVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 279
Query: 509 QLDGFEATKNIK 520
QLDGF++ +K
Sbjct: 280 QLDGFDSLGKVK 291
Score = 283 (104.7 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 58/101 (57%), Positives = 72/101 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNR D LDPALLRPGR+DRKIE PNE++RL+IL+IHS K+ I+ + +
Sbjct: 291 KVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVK 350
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649
L G S A+++ VCTEAGM+A+R R V EDF AV KV
Sbjct: 351 LSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391
Score = 104 (41.7 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF A +++ VCTEAGM+A+R R V EDF AV KV
Sbjct: 353 DGFSAA-DLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391
Score = 75 (31.5 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 146 EQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXX 205
EQ L+ L+ + +E+ + G VGEV+K + ++K +VK ++
Sbjct: 40 EQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVG 99
Query: 206 XXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV+L + T+ + LP ++D
Sbjct: 100 CRRSINKEELKQGTRVSLDMTTLTIMRQLPREVD 133
>SGD|S000001628 [details] [associations]
symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
GermOnline:YKL145W Uniprot:P33299
Length = 467
Score = 468 (169.8 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 96/178 (53%), Positives = 118/178 (66%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
RV + Y + LP ++DP V++M VE+ PD TY VGG +QI++++EV+ELP+ P
Sbjct: 173 RVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSP 232
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVR 462
E F LGI PKG+LLYGPPGTGKTL ARAVA+ T+ TFIRV GSELVQK++GEG+RMVR
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 463 ELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
ELF MAR IIF VQRTMLEL+ QLDGF+ NIK
Sbjct: 293 ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350
Score = 292 (107.8 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 62/115 (53%), Positives = 82/115 (71%)
Query: 538 VTQED-FE-MAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595
+TQ D F+ KV+ ATNR + LDPALLRPGRIDRK+EF P+ E R +I RIHS+ M
Sbjct: 337 ITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM 396
Query: 596 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
++ RGI I+ L P ++GAE++ VCTEAGM+A+R RR T++DF AV KV+
Sbjct: 397 SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 451
Score = 101 (40.6 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+++L ++ VCTEAGM+A+R RR T++DF AV KVI
Sbjct: 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 451
Score = 39 (18.8 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 328 EVQRTMLELITQLDGFDP 345
>UNIPROTKB|F1SID4 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
Length = 446
Score = 437 (158.9 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 154 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 213
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 214 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 273
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 274 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 333
Query: 520 K 520
K
Sbjct: 334 K 334
Score = 294 (108.6 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 334 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 393
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 394 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 437
Score = 76 (31.8 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 390 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 434
Score = 44 (20.5 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 293 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 335
Score = 40 (19.1 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 30/154 (19%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYE-VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E V+R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 37 GE-EVLKMSTEEIVQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 92
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 93 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 151
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 152 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 183
Score = 39 (18.8 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 79 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 136
Query: 401 HPELFDALGI 410
+G+
Sbjct: 137 QTYFLPVIGL 146
>MGI|MGI:1098754 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
NextBio:295874 Bgee:O88685 Genevestigator:O88685
GermOnline:ENSMUSG00000002102 Uniprot:O88685
Length = 442
Score = 437 (158.9 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 150 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 209
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 210 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 269
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 329
Query: 520 K 520
K
Sbjct: 330 K 330
Score = 294 (108.6 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 330 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 390 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 433
Score = 76 (31.8 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 386 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 430
Score = 44 (20.5 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 289 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 331
Score = 40 (19.1 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 30/154 (19%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYE-VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E V+R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 33 GE-EVLKMSTEEIVQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 88
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 89 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 147
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 148 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 179
Score = 39 (18.8 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 75 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 132
Query: 401 HPELFDALGI 410
+G+
Sbjct: 133 QTYFLPVIGL 142
>RGD|61905 [details] [associations]
symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0001824 "blastocyst development"
evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
Length = 439
Score = 437 (158.9 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326
Query: 520 K 520
K
Sbjct: 327 K 327
Score = 294 (108.6 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 387 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 430
Score = 76 (31.8 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 383 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 427
Score = 44 (20.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 286 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 328
Score = 40 (19.1 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 30/154 (19%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYE-VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E V+R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 30 GE-EVLKMSTEEIVQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 85
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 86 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 144
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 145 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 176
Score = 39 (18.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 72 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 129
Query: 401 HPELFDALGI 410
+G+
Sbjct: 130 QTYFLPVIGL 139
>UNIPROTKB|Q6P6U2 [details] [associations]
symbol:Psmc3 "26S protease regulatory subunit 6A"
species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
Genevestigator:Q6P6U2 Uniprot:Q6P6U2
Length = 442
Score = 437 (158.9 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 150 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 209
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 210 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 269
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 329
Query: 520 K 520
K
Sbjct: 330 K 330
Score = 294 (108.6 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 330 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 390 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 433
Score = 76 (31.8 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 386 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 430
Score = 44 (20.5 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 289 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 331
Score = 40 (19.1 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
Identities = 30/154 (19%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYE-VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E V+R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 33 GE-EVLKMSTEEIVQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 88
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 89 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 147
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 148 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 179
Score = 39 (18.8 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 75 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 132
Query: 401 HPELFDALGI 410
+G+
Sbjct: 133 QTYFLPVIGL 142
>UNIPROTKB|F1PBK7 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
Length = 439
Score = 437 (158.9 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326
Query: 520 K 520
K
Sbjct: 327 K 327
Score = 294 (108.6 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 387 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 430
Score = 76 (31.8 bits), Expect = 2.4e-50, Sum P(3) = 2.4e-50
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 383 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 427
Score = 44 (20.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 286 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 328
Score = 39 (18.8 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
Identities = 29/154 (18%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYEV-ERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E+ +R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 30 GE-EVLKMSTEEIIQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 85
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 86 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 144
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 145 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 176
Score = 39 (18.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 72 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 129
Query: 401 HPELFDALGI 410
+G+
Sbjct: 130 QTYFLPVIGL 139
>UNIPROTKB|P17980 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
"blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=TAS] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
Length = 439
Score = 437 (158.9 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326
Query: 520 K 520
K
Sbjct: 327 K 327
Score = 294 (108.6 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 387 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 430
Score = 76 (31.8 bits), Expect = 2.4e-50, Sum P(3) = 2.4e-50
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 383 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 427
Score = 44 (20.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 286 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 328
Score = 39 (18.8 bits), Expect = 3.7e-73, Sum P(3) = 3.7e-73
Identities = 29/154 (18%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYEV-ERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E+ +R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 30 GE-EVLKMSTEEIIQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 85
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 86 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 144
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 145 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 176
Score = 39 (18.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 72 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 129
Query: 401 HPELFDALGI 410
+G+
Sbjct: 130 QTYFLPVIGL 139
>ASPGD|ASPL0000032311 [details] [associations]
symbol:AN5747 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
Length = 393
Score = 482 (174.7 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 102/252 (40%), Positives = 146/252 (57%)
Query: 263 LIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPE 322
L + E E L+ L+ +L + + G +GEV+K +D+++ +VK
Sbjct: 21 LDLREWEAKLKALRMGIKDLQREFDISEENIKALQSVGQIIGEVLKQLDEERFIVKASSG 80
Query: 323 GKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVG 382
++ RVAL + T+ ++LP +VDPLV M +E + +G
Sbjct: 81 PRYVVGCRSKVDRSKLKQGTRVALDMTTLTIMRMLPREVDPLVYNMSLEDPGQINFAGIG 140
Query: 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
GL++QI+E++EVIELP+K+PELF +GI PKGVLLYGPPGTGKTLLARAVA E F+
Sbjct: 141 GLNDQIRELREVIELPLKNPELFQRVGIKPPKGVLLYGPPGTGKTLLARAVASSMETNFL 200
Query: 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRT 502
+V S +V K+IGE +R++RE+F A+EH P IIFM +QRT
Sbjct: 201 KVVSSAIVDKYIGESARLIREMFGYAKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRT 260
Query: 503 MLELLNQLDGFE 514
++ELLNQLDGF+
Sbjct: 261 LMELLNQLDGFD 272
Score = 275 (101.9 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 55/116 (47%), Positives = 79/116 (68%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLR GR+DRKIE P PNE RL+IL+IHS + + I+ + +
Sbjct: 278 KIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQMEGDIDFESVVK 337
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKKL 663
+ G +GA+++ V TEAG++A+++ R + Q+DF AV KV + K E + +KL
Sbjct: 338 MSDGLNGADLRNVVTEAGLFAIKDYRDAINQDDFNRAVRKVAEAKKLEGKLEYQKL 393
Score = 82 (33.9 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553
DG +++ V TEAG++A+++ R + Q+DF AV KV A
Sbjct: 340 DGLNGA-DLRNVVTEAGLFAIKDYRDAINQDDFNRAVRKVAEA 381
Score = 79 (32.9 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 22/100 (22%), Positives = 43/100 (43%)
Query: 140 LIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPE 199
L + E E L+ L+ +L + + G +GEV+K +D+++ +VK
Sbjct: 21 LDLREWEAKLKALRMGIKDLQREFDISEENIKALQSVGQIIGEVLKQLDEERFIVKASSG 80
Query: 200 GKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
++ RVAL + T+ ++LP ++D
Sbjct: 81 PRYVVGCRSKVDRSKLKQGTRVALDMTTLTIMRMLPREVD 120
Score = 38 (18.4 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF TKI
Sbjct: 249 EGTSADREIQRTLMELLNQLDGFDYLGKTKI 279
>ZFIN|ZDB-GENE-030131-666 [details] [associations]
symbol:psmc3 "proteasome (prosome, macropain) 26S
subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
Uniprot:F1QJQ2
Length = 427
Score = 437 (158.9 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 135 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 194
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 195 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 254
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 255 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQV 314
Query: 520 K 520
K
Sbjct: 315 K 315
Score = 288 (106.4 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
Identities = 57/104 (54%), Positives = 71/104 (68%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN+ +N ++A
Sbjct: 315 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVCPDVNFEELAR 374
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR + ED+ + +V K
Sbjct: 375 CTDDFNGAQCKAVCVEAGMIALRRGATELNHEDYMEGILEVQAK 418
Score = 71 (30.1 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR + ED+ + +V
Sbjct: 371 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELNHEDYMEGILEV 415
Score = 45 (20.9 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 274 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNMQVKV 316
Score = 41 (19.5 bits), Expect = 9.8e-73, Sum P(3) = 9.8e-73
Identities = 30/154 (19%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYE-VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E V+R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 18 GE-EVLKMSTEEIVQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENTEKIKVNKT 73
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 74 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 132
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 133 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 164
Score = 38 (18.4 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 60 KIKENTEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 117
Query: 401 HPELFDALGI 410
+G+
Sbjct: 118 QTYFLPVIGL 127
>UNIPROTKB|Q9FXT8 [details] [associations]
symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
KEGG:osa:4328642 Uniprot:Q9FXT8
Length = 400
Score = 469 (170.2 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 92/221 (41%), Positives = 135/221 (61%)
Query: 300 GSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPN 359
G +GEV++P+D ++ +VK ++ T RV L + T+ + LP
Sbjct: 61 GQIIGEVLRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPR 120
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
+VDP+V M+ E + +Y VGGL +QI+E++E IELP+ +PELF +GI PKGVLLY
Sbjct: 121 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 180
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPGTGKTLLARA+A + + F+++ S ++ K+IGE +R++RE+F AR+H P IIFM
Sbjct: 181 GPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 240
Query: 480 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRT++ELLNQLDGF+ +K
Sbjct: 241 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVK 281
Score = 284 (105.0 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 57/113 (50%), Positives = 80/113 (70%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINL 603
E+ K+IMATNR D+LDPALLRPGR+DRKIE P PNE+AR+++L+IH+ + I+
Sbjct: 276 ELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDY 335
Query: 604 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
+ +L G +GA+++ VCTEAGM A+R R +V EDF AV K+ D++K
Sbjct: 336 EAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVVHEDFMKAVRKL--NDAKK 386
Score = 91 (37.1 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
+GF +++ VCTEAGM A+R R +V EDF AV K+
Sbjct: 343 EGFNGA-DLRNVCTEAGMAAIRAERDYVVHEDFMKAVRKL 381
Score = 76 (31.8 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 177 GSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPN 236
G +GEV++P+D ++ +VK ++ T RV L + T+ + LP
Sbjct: 61 GQIIGEVLRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPR 120
Query: 237 KMD 239
++D
Sbjct: 121 EVD 123
>DICTYBASE|DDB_G0276917 [details] [associations]
symbol:psmC2 "26S proteasome ATPase 2 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
"proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
Length = 428
Score = 470 (170.5 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 101/216 (46%), Positives = 128/216 (59%)
Query: 305 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPL 364
+V KP K ++ V KF RV + Y + LP K+D
Sbjct: 98 DVGKP--NAKYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDAS 155
Query: 365 VSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 424
V++M VE+ PD TY+ VGG QI++++EV+E+P+ HPE F LGI PKGVL+YGPPGT
Sbjct: 156 VTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGT 215
Query: 425 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXX 484
GKTL ARAVA+ T+ F+RV GSELVQK++GEG+RMVR+LF MAR IIF
Sbjct: 216 GKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAI 275
Query: 485 XXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+NQLDGF+ NIK
Sbjct: 276 GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 311
Score = 280 (103.6 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 54/103 (52%), Positives = 75/103 (72%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LDPALLRPGR+DRK+EF P+ E R I IH++ M+ R I +A
Sbjct: 311 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLAR 370
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
L P ++GA+++ VCTEAGM+A+R RR V+++DF A+ KV++
Sbjct: 371 LCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIK 413
Score = 101 (40.6 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
ELL +L +I+ VCTEAGM+A+R RR V+++DF A+ KVI
Sbjct: 366 ELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVI 412
Score = 40 (19.1 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 289 EVQRTMLELINQLDGFDP 306
Score = 40 (19.1 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 17/71 (23%), Positives = 24/71 (33%)
Query: 182 EVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVD 241
+V KP K ++ V KF RV + Y + LP K+D
Sbjct: 98 DVGKP--NAKYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDAS 155
Query: 242 EAIKSSEGFKP 252
+ E KP
Sbjct: 156 VTMMQVEE-KP 165
>ASPGD|ASPL0000010049 [details] [associations]
symbol:AN4236 species:162425 "Emericella nidulans"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
Uniprot:Q5B5E4
Length = 465
Score = 416 (151.5 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 86/181 (47%), Positives = 111/181 (61%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P + + +SY + LP + D V M V++ P Y +GGLD QI+EI E I P+
Sbjct: 172 PGDLIGVNKDSYLILDTLPAEYDNRVKAMEVDEKPTEKYTDIGGLDKQIEEIVEAIVWPM 231
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
K E F LGI PKG L+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+G++
Sbjct: 232 KEAERFKKLGIKAPKGALMYGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAK 291
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF + I
Sbjct: 292 LVRDCFALAKEKAPSIIFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRI 351
Query: 520 K 520
K
Sbjct: 352 K 352
Score = 297 (109.6 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 59/112 (52%), Positives = 78/112 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+ ATNR+D+LDPALLR GR+DRKIEFP PNEEAR +IL+IHSRKM + +N ++A
Sbjct: 352 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPNEEARANILQIHSRKMTVEDSVNWAELAR 411
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI 660
GA++K VC EAGM ALR+ + E++ A+A+V K + NM I
Sbjct: 412 STDEFGGAQLKAVCVEAGMIALRKGHSKIGHENYVDAIAEVQAKKKDTNMGI 463
Score = 76 (31.8 bits), Expect = 2.0e-48, Sum P(3) = 2.0e-48
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + +K VC EAGM ALR+ + E++ A+A+V
Sbjct: 408 ELARSTDEFGGAQ-LKAVCVEAGMIALRKGHSKIGHENYVDAIAEV 452
Score = 43 (20.2 bits), Expect = 1.5e-71, Sum P(3) = 1.5e-71
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 41 SQTKDVPLKRKMPGQNKNETVVTTITFHNVTIPNREILTAFHKIIRKENKEKLQN 95
S T D+ +R+M +NE + + +T E T K+ K+N+EK++N
Sbjct: 60 SSTADIIKRRRML---ENELRIMKSEYQRLT---HEQNTMKEKV--KDNQEKIEN 106
>ASPGD|ASPL0000034636 [details] [associations]
symbol:AN2917 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0045899 "positive regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001306
EMBL:AACD01000051 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
OrthoDB:EOG4B01XN RefSeq:XP_660521.1 ProteinModelPortal:Q5B963
STRING:Q5B963 EnsemblFungi:CADANIAT00010170 GeneID:2874156
KEGG:ani:AN2917.2 Uniprot:Q5B963
Length = 443
Score = 461 (167.3 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 103/217 (47%), Positives = 127/217 (58%)
Query: 308 KPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNC----RVALRNESYTLHKILPNKVDP 363
K DK K ++ V KF + R+++ Y + LP K+DP
Sbjct: 110 KDSDKSKYVINVKQIAKFVVNLGERVSPTDIEEDLSHTDRLSVDRNKYQIMLPLPPKIDP 169
Query: 364 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423
V++M VE PD TY VGG QI++++EV+E+P+ PE F LGI PKG LLYGPPG
Sbjct: 170 SVTMMTVEDKPDVTYGDVGGCKEQIEKLREVVEMPLLSPERFVNLGIDPPKGALLYGPPG 229
Query: 424 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXX 483
TGKTL ARAVA+ T+ TFIRV GSELVQK++GEG+RMVRELF MAR IIF
Sbjct: 230 TGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDA 289
Query: 484 XXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+ QLDGF+A NIK
Sbjct: 290 VGGARFDDGAGGDNEVQRTMLELITQLDGFDARGNIK 326
Score = 281 (104.0 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 62/122 (50%), Positives = 84/122 (68%)
Query: 538 VTQED-FEM-AVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595
+TQ D F+ KV+ ATNR LDPAL+RPGRIDRKIEF P+ E R +ILRIH++ M
Sbjct: 313 ITQLDGFDARGNIKVMFATNRPSTLDPALMRPGRIDRKIEFSLPDVEGRANILRIHAKSM 372
Query: 596 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
++ R I I+ L P A+GAE++ V TEAGM+A+R RR T++DF AV KV++ + +
Sbjct: 373 SVERDIRWELISRLCPNATGAELRSVATEAGMFAIRARRKVATEKDFLAAVDKVIKGNLK 432
Query: 656 KN 657
N
Sbjct: 433 FN 434
Score = 91 (37.1 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL+++L ++ V TEAGM+A+R RR T++DF AV KVI
Sbjct: 381 ELISRLCPNATGAELRSVATEAGMFAIRARRKVATEKDFLAAVDKVI 427
>ASPGD|ASPL0000049719 [details] [associations]
symbol:AN2213 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0043171 "peptide catabolic process"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001307
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER
OrthoDB:EOG4FN7S6 EMBL:AACD01000035 RefSeq:XP_659817.1
ProteinModelPortal:Q5BB67 STRING:Q5BB67
EnsemblFungi:CADANIAT00008897 GeneID:2875757 KEGG:ani:AN2213.2
Uniprot:Q5BB67
Length = 460
Score = 484 (175.4 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 101/267 (37%), Positives = 153/267 (57%)
Query: 254 YVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKK 313
YV +E L+ A + R + NA R R G VG + + +D
Sbjct: 82 YVENMERLRKAKASASDSANRGDVDITDRNADERS-RVDDMRGSPMG--VGNLEELIDDD 138
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 373
+V ++ P + L +++ ++ +L + DPLVS+M ++K
Sbjct: 139 HAIVSSATGPEYYVSIMSFVDKDLLEPGASILLHHKTVSVVGVLTEESDPLVSVMKLDKA 198
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
P +Y +GGL++QI+E++E +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AV
Sbjct: 199 PTESYADIGGLESQIQEVRESVELPLLHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 258
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T TF+R+ GSEL+QK++G+G R+VR++F +A EHAPSI+F+
Sbjct: 259 ANQTSATFLRIVGSELIQKYLGDGPRLVRQIFQVAAEHAPSIVFIDEIDAIGTKRYDSTS 318
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF+ ++K
Sbjct: 319 GGEREIQRTMLELLNQLDGFDDRGDVK 345
Score = 256 (95.2 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATN+I+ LDPAL+RPGRIDRKI F P++ + I +H+ KM+L ++L +
Sbjct: 345 KVIMATNKIETLDPALIRPGRIDRKILFENPDQNTKKKIFTLHTSKMSLGDDVDLDEFIN 404
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
SGA+++ +CTEAG+ ALRERR+ V +DF A ++M+
Sbjct: 405 QKDDLSGADIRAICTEAGLMALRERRMRVQMDDFRAARERIMK 447
Score = 104 (41.7 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
E +NQ D +I+ +CTEAG+ ALRERR+ V +DF A + IM T +
Sbjct: 401 EFINQKDDLSGA-DIRAICTEAGLMALRERRMRVQMDDFRAARER-IMKTKQ 450
Score = 42 (19.8 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 85 IRKENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEEL 138
+RK +AN G++D+ + E R R VD+ ++ S P V +EEL
Sbjct: 89 LRKAKASASDSANRGDVDITDRNADE--RSR-VDD-MRGS----PMGVGNLEEL 134
>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory
subunit 7, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
Uniprot:Q8IEK3
Length = 420
Score = 463 (168.0 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 95/210 (45%), Positives = 126/210 (60%)
Query: 311 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMV 370
D+ K ++ V KF RV + Y + +LP K+DP V++M V
Sbjct: 94 DQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTV 153
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E+ PD TY +GG Q+++++EV+E+P+ PE F LGI PKGVLLYGPPGTGKTL A
Sbjct: 154 EEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTA 213
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RA+A+ T+ FI V GSELVQK++GEG+RMVRELF MA+ I+F+
Sbjct: 214 RAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRGD 273
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLE++NQLDGF+ NIK
Sbjct: 274 ESAHGDHEVQRTMLEIVNQLDGFDNRGNIK 303
Score = 277 (102.6 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 51/102 (50%), Positives = 75/102 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LD AL+RPGRIDR+IEF P+ E R I +IH+ MN++R + +A
Sbjct: 303 KVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLAR 362
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L P ++G++++ VCTEAGM+A+R RR +T++D +A+ KV+
Sbjct: 363 LCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVI 404
Score = 104 (41.7 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
ELL +L +I+ VCTEAGM+A+R RR +T++D +A+ KVI
Sbjct: 358 ELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVI 404
Score = 46 (21.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 15/65 (23%), Positives = 24/65 (36%)
Query: 188 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSS 247
D+ K ++ V KF RV + Y + +LP K+D + +
Sbjct: 94 DQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTV 153
Query: 248 EGFKP 252
E KP
Sbjct: 154 EE-KP 157
Score = 37 (18.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 104 DEAYTYEVERQRTVDEAIKSSEGF 127
DE+ + E QRT+ E + +GF
Sbjct: 273 DESAHGDHEVQRTMLEIVNQLDGF 296
>UNIPROTKB|Q8IEK3 [details] [associations]
symbol:PF13_0063 "26S proteasome regulatory subunit 7,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
"endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
Length = 420
Score = 463 (168.0 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 95/210 (45%), Positives = 126/210 (60%)
Query: 311 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMV 370
D+ K ++ V KF RV + Y + +LP K+DP V++M V
Sbjct: 94 DQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTV 153
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E+ PD TY +GG Q+++++EV+E+P+ PE F LGI PKGVLLYGPPGTGKTL A
Sbjct: 154 EEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTA 213
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RA+A+ T+ FI V GSELVQK++GEG+RMVRELF MA+ I+F+
Sbjct: 214 RAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSKKACILFIDEVDAIGGSRGD 273
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLE++NQLDGF+ NIK
Sbjct: 274 ESAHGDHEVQRTMLEIVNQLDGFDNRGNIK 303
Score = 277 (102.6 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 51/102 (50%), Positives = 75/102 (73%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+MATNR D LD AL+RPGRIDR+IEF P+ E R I +IH+ MN++R + +A
Sbjct: 303 KVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLAR 362
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L P ++G++++ VCTEAGM+A+R RR +T++D +A+ KV+
Sbjct: 363 LCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVI 404
Score = 104 (41.7 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
ELL +L +I+ VCTEAGM+A+R RR +T++D +A+ KVI
Sbjct: 358 ELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVI 404
Score = 46 (21.3 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 15/65 (23%), Positives = 24/65 (36%)
Query: 188 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSS 247
D+ K ++ V KF RV + Y + +LP K+D + +
Sbjct: 94 DQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTV 153
Query: 248 EGFKP 252
E KP
Sbjct: 154 EE-KP 157
Score = 37 (18.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 104 DEAYTYEVERQRTVDEAIKSSEGF 127
DE+ + E QRT+ E + +GF
Sbjct: 273 DESAHGDHEVQRTMLEIVNQLDGF 296
>POMBASE|SPCC1682.16 [details] [associations]
symbol:rpt4 "19S proteasome regulatory subunit Rpt4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISM] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=NAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
NextBio:20800360 Uniprot:O74445
Length = 388
Score = 472 (171.2 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 100/248 (40%), Positives = 142/248 (57%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ +L K G +GEV+K +D ++ +VK ++
Sbjct: 20 EWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYV 79
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
RV+L + T+ +ILP +VDPLV M +E D ++ VGGL+
Sbjct: 80 VGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNE 139
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+K+PELF +GI PKGVLLYGPPGTGKTLLARAVA F++V
Sbjct: 140 QIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVS 199
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F A+EH P +IFM +QRT++EL
Sbjct: 200 SAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 259
Query: 507 LNQLDGFE 514
LNQ+DGF+
Sbjct: 260 LNQMDGFD 267
Score = 263 (97.6 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 64/160 (40%), Positives = 92/160 (57%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED-FE-MAVAKVIMATNRIDILDPAL 564
++++D + +G T A R + Q D F+ + K+IMATNR D LDPAL
Sbjct: 231 MDEIDAIGGRRFSEG--TSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPAL 288
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
LRPGR+DRKIE P PNE R++IL+IH K++ I+ + +L G +GA+++ V TE
Sbjct: 289 LRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTE 348
Query: 625 AGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKKL 663
AG A++E R +V Q D A KV K E + +KL
Sbjct: 349 AGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQKL 388
Score = 76 (31.8 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
E + L+ L+ +L K G +GEV+K +D ++ +VK ++
Sbjct: 20 EWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYV 79
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV+L + T+ +ILP ++D
Sbjct: 80 VGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVD 115
>POMBASE|SPBC16C6.07c [details] [associations]
symbol:rpt1 "19S proteasome regulatory subunit Rpt1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
IntAct:O42931 STRING:O42931 PRIDE:O42931
EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
Length = 438
Score = 464 (168.4 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 99/210 (47%), Positives = 122/210 (58%)
Query: 311 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMV 370
+K ++ + KF RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E+ PD TY VGG QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL A
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T+ TFIRV GSELVQK++GEG+RMVRELF MAR IIF
Sbjct: 231 RAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFD 290
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQRTMLEL+ QLDGF+ NIK
Sbjct: 291 DGAGGDNEVQRTMLELITQLDGFDPRGNIK 320
Score = 271 (100.5 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
Identities = 61/121 (50%), Positives = 82/121 (67%)
Query: 538 VTQED-FE-MAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595
+TQ D F+ KV+ ATNR + LD AL+RPGRIDRK+EF P+ E R ILRIH++ M
Sbjct: 307 ITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSM 366
Query: 596 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
+ + I IA L P +GAE++ VCTEAGM+A+R RR T++DF AV KV+ K ++
Sbjct: 367 AIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVV-KGNQ 425
Query: 656 K 656
K
Sbjct: 426 K 426
Score = 99 (39.9 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
EL+ +L + ++ VCTEAGM+A+R RR T++DF AV KV+ +
Sbjct: 375 ELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKGNQK 426
Score = 39 (18.8 bits), Expect = 8.0e-21, Sum P(2) = 8.0e-21
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 112 ERQRTVDEAIKSSEGFKP 129
E QRT+ E I +GF P
Sbjct: 298 EVQRTMLELITQLDGFDP 315
>UNIPROTKB|F1NDQ1 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
Length = 385
Score = 437 (158.9 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 93 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 152
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 153 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 212
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 213 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 272
Query: 520 K 520
K
Sbjct: 273 K 273
Score = 294 (108.6 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 273 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 332
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 333 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 376
Score = 76 (31.8 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 329 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 373
Score = 44 (20.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 232 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 274
Score = 37 (18.1 bits), Expect = 8.9e-27, Sum P(2) = 8.9e-27
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 93 PGDLVGVNKDSYLILETLPT--EYDSRVKAME 122
>UNIPROTKB|F1P3L9 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
accessory complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
Length = 389
Score = 437 (158.9 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 97 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 156
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 157 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 216
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 217 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 276
Query: 520 K 520
K
Sbjct: 277 K 277
Score = 294 (108.6 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 277 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 336
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 337 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 380
Score = 76 (31.8 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 333 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 377
Score = 44 (20.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 236 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 278
Score = 37 (18.1 bits), Expect = 8.9e-27, Sum P(2) = 8.9e-27
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 97 PGDLVGVNKDSYLILETLPT--EYDSRVKAME 126
>UNIPROTKB|E9PM69 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
Bgee:E9PM69 Uniprot:E9PM69
Length = 397
Score = 437 (158.9 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 105 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 164
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 165 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 224
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 225 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 284
Query: 520 K 520
K
Sbjct: 285 K 285
Score = 294 (108.6 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 285 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 344
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 345 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 388
Score = 76 (31.8 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 341 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 385
Score = 44 (20.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 244 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 286
Score = 37 (18.1 bits), Expect = 8.9e-27, Sum P(2) = 8.9e-27
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 105 PGDLVGVNKDSYLILETLPT--EYDSRVKAME 134
>UNIPROTKB|O42586 [details] [associations]
symbol:psmc3-b "26S protease regulatory subunit 6A-B"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
Xenbase:XB-GENE-1009853 Uniprot:O42586
Length = 404
Score = 439 (159.6 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 88/181 (48%), Positives = 117/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 112 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 171
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 172 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 231
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ T +
Sbjct: 232 LVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQV 291
Query: 520 K 520
K
Sbjct: 292 K 292
Score = 290 (107.1 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 57/104 (54%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 292 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 351
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAG+ ALR +T ED+ + +V K
Sbjct: 352 CTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEVQAK 395
Score = 72 (30.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAG+ ALR +T ED+ + +V
Sbjct: 348 ELARCTDDFNGAQ-CKAVCVEAGIIALRRGATELTHEDYMEGILEV 392
Score = 45 (20.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 251 DELDAIGNKRFDSEKAGDREV--QRTMLELLNQLDGFQPTTQVKV 293
Score = 39 (18.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 37 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 94
Query: 401 HPELFDALGI 410
+G+
Sbjct: 95 QTYFLPVIGL 104
Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 112 PGDLVGVNKDSYLILETLPT--EYDSRVKAME 141
>FB|FBgn0028684 [details] [associations]
symbol:Rpt5 "Regulatory particle triple-A ATPase 5"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA;NAS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 HSSP:Q01853 TIGRFAMs:TIGR01242 GO:GO:0008540
ChiTaRS:PSMC3 FlyBase:FBgn0028684 EMBL:AF134402
ProteinModelPortal:Q9XZC3 STRING:Q9XZC3 PRIDE:Q9XZC3
InParanoid:Q9XZC3 ArrayExpress:Q9XZC3 Bgee:Q9XZC3 Uniprot:Q9XZC3
Length = 431
Score = 412 (150.1 bits), Expect = 2.1e-69, Sum P(3) = 2.1e-69
Identities = 83/181 (45%), Positives = 115/181 (63%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P + + Y + + LP + D V M V++ P + +GGLD QI+E+ E + LP+
Sbjct: 140 PGDLAGVNKDFYLILETLPAEYDARVKAMEVDERPTEQFSDIGGLDKQIQELIEAVVLPM 199
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F LGI PKGV+LYGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 200 THKEKFKNLGIHPPKGVILYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAK 259
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP+IIF+ VQRTMLELLNQL+GF +T +I
Sbjct: 260 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLNGFSSTADI 319
Query: 520 K 520
K
Sbjct: 320 K 320
Score = 284 (105.0 bits), Expect = 2.1e-69, Sum P(3) = 2.1e-69
Identities = 59/104 (56%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DIL PALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N +++
Sbjct: 320 KVIAATNRVDIL-PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSR 378
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR VT EDF A+ +V K
Sbjct: 379 STDDFNGAQCKAVCVEAGMIALRRSANSVTHEDFMDAIMEVQAK 422
Score = 84 (34.6 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR VT EDF A+ +V
Sbjct: 375 ELSRSTDDFNGAQ-CKAVCVEAGMIALRRSANSVTHEDFMDAIMEV 419
Score = 52 (23.4 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 341 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVK 400
N ++ E ++K LP V ++ L+ V+ + V LDNQ K VI+ +
Sbjct: 63 NEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTR 122
Query: 401 HPELFDALGI 410
+G+
Sbjct: 123 QAYFLPVIGL 132
Score = 41 (19.5 bits), Expect = 2.1e-69, Sum P(3) = 2.1e-69
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 108 TYEVERQRTVDEAIK-SSEGFK-----PYYVTKIEELQLIVAEKEQNLRRLQAQRNELNA 161
T+E++ Q +E IK ++E K PY V+ + EL + ++E++ + N+
Sbjct: 56 THEIQAQ---NEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKG 112
Query: 162 KVRMLRXXXXXXXXX---GSYVGEVVKPMD 188
K +++ G E +KP D
Sbjct: 113 KCAVIKTSTRQAYFLPVIGLVDAEKLKPGD 142
Score = 39 (18.8 bits), Expect = 3.5e-69, Sum P(3) = 3.5e-69
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 239 DVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXX 298
D E IK ++ PY V+ + EL + ++E++ + N+ K +++
Sbjct: 68 DNTEKIKVNKTL-PYLVSNVIELLDVDPQEEEDDGSVTVLDNQRKGKCAVIKTSTRQAYF 126
Query: 299 X---GSYVGEVVKPMD 311
G E +KP D
Sbjct: 127 LPVIGLVDAEKLKPGD 142
>FB|FBgn0028686 [details] [associations]
symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
"endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
Uniprot:Q9V405
Length = 413
Score = 470 (170.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 101/300 (33%), Positives = 163/300 (54%)
Query: 228 YTLHKILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVR 287
Y + ++P K ++ + +K + +E+L + + ++ L ++ Q + + R
Sbjct: 3 YNMDVLIPEKDELSD-LKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQR 61
Query: 288 MLRXXXXXXXXXGS-------YVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTP 340
L+ +G+ ++ +D+ +V + P
Sbjct: 62 NLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKP 121
Query: 341 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVK 400
+ VAL S L +LP + D +S++ ++ PD +Y +GG+D Q +EI+E +ELP+
Sbjct: 122 SASVALHKHSNALVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLT 181
Query: 401 HPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM 460
H EL+ +GI P+GVL+YGPPG GKT+LA+AVAHHT +FIRV GSE VQK++GEG RM
Sbjct: 182 HFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRM 241
Query: 461 VRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VR++F +A+E+AP+IIF+ VQR +LELLNQ+DGF+ T N+K
Sbjct: 242 VRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 301
Score = 251 (93.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 50/109 (45%), Positives = 70/109 (64%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNR D LDPALLRPGR+DRKIEFP P+ + + + KMNL+ ++L +
Sbjct: 301 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVA 360
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
SGA++ +C EAGM+A+RE R V +DFE ++KD +++
Sbjct: 361 RPDKISGADINAICQEAGMHAVRENRYIVLAKDFEKGYKNNIKKDEQEH 409
Score = 74 (31.1 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFE 544
+I +C EAGM+A+RE R V +DFE
Sbjct: 369 DINAICQEAGMHAVRENRYIVLAKDFE 395
Score = 42 (19.8 bits), Expect = 6.2e-19, Sum P(2) = 6.2e-19
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + P+ VAL S L +LP + D
Sbjct: 84 IGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEAD 143
>DICTYBASE|DDB_G0284415 [details] [associations]
symbol:psmC3 "26S proteasome ATPase 3 subunit"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
Length = 421
Score = 427 (155.4 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 83/181 (45%), Positives = 115/181 (63%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + LP + D V M +++ P Y +GGLD QI+E+ E + LP+
Sbjct: 129 PGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPM 188
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+++GI PKGVL+YGPPGTGKTLLARA A T T+++++G +LVQ FIG+G++
Sbjct: 189 THKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAK 248
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E P+IIF+ VQRTMLELLNQLDGF + NI
Sbjct: 249 LVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANI 308
Query: 520 K 520
K
Sbjct: 309 K 309
Score = 291 (107.5 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 60/104 (57%), Positives = 72/104 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNRIDILDPALLR GR+DRKIEFP PNEEAR IL+IHSRKMN++ +N ++A
Sbjct: 309 KVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELAR 368
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA++K VC EAGM ALR + DF +VM K
Sbjct: 369 SSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAK 412
Score = 66 (28.3 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL + F + +K VC EAGM ALR + DF +V+
Sbjct: 365 ELARSSEDFNGAQ-LKAVCVEAGMIALRRGGTELIHNDFVEGCVEVM 410
>UNIPROTKB|F1MWE0 [details] [associations]
symbol:PSMC3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022624 "proteasome accessory complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:DAAA02041602 IPI:IPI00701790
UniGene:Bt.49089 Ensembl:ENSBTAT00000028983 NextBio:20868523
Uniprot:F1MWE0
Length = 456
Score = 403 (146.9 bits), Expect = 5.7e-69, Sum P(3) = 5.7e-69
Identities = 87/197 (44%), Positives = 117/197 (59%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEV----- 394
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E++E
Sbjct: 148 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQEVREARHLTS 207
Query: 395 -----------IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443
I LP+ H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++
Sbjct: 208 LLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLK 267
Query: 444 VSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTM 503
++G +LVQ FIG+G+++VR+ F +A+E APSIIF+ VQRTM
Sbjct: 268 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTM 327
Query: 504 LELLNQLDGFEATKNIK 520
LELLNQLDGF+ +K
Sbjct: 328 LELLNQLDGFQPNTQVK 344
Score = 294 (108.6 bits), Expect = 5.7e-69, Sum P(3) = 5.7e-69
Identities = 58/104 (55%), Positives = 73/104 (70%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 344 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 403
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR +T ED+ + +V K
Sbjct: 404 CTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAK 447
Score = 76 (31.8 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR +T ED+ + +V
Sbjct: 400 ELARCTDDFNGAQ-CKAVCVEAGMIALRRGATELTHEDYMEGILEV 444
Score = 44 (20.5 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 303 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNTQVKV 345
Score = 39 (18.8 bits), Expect = 5.7e-69, Sum P(3) = 5.7e-69
Identities = 29/154 (18%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYEV-ERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E+ +R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 31 GE-EVLKMSTEEIIQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKT 86
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 87 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 145
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 146 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 177
Score = 39 (18.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 73 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 130
Query: 401 HPELFDALGI 410
+G+
Sbjct: 131 QTYFLPVIGL 140
>SGD|S000005785 [details] [associations]
symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
"ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
assembly" evidence=IMP] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0019904 "protein domain specific binding"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
Uniprot:P53549
Length = 437
Score = 444 (161.4 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 95/248 (38%), Positives = 141/248 (56%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
++ QN+R L+ ++ ++ L+ G +GEV+K + ++K +VK ++
Sbjct: 76 QRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGPRYI 128
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
RV L + T+ +ILP + DPLV M + + T++ +GGL
Sbjct: 129 VGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTE 188
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+K+PE+F +GI PKGVLLYGPPGTGKTLLA+AVA FI
Sbjct: 189 QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLEL 506
S +V K+IGE +R++RE+F A+EH P IIFM +QRT++EL
Sbjct: 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 308
Query: 507 LNQLDGFE 514
L Q+DGF+
Sbjct: 309 LTQMDGFD 316
Score = 272 (100.8 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 57/129 (44%), Positives = 82/129 (63%)
Query: 538 VTQED-FE-MAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595
+TQ D F+ + K+IMATNR D LDPALLRPGR+DRK+E P PNE RL+I +IH+ K+
Sbjct: 309 LTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368
Query: 596 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ-KDS 654
T + ++ G +GA+++ TEAG +A+R+ R H+ +D AV KV + K
Sbjct: 369 KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKL 428
Query: 655 EKNMSIKKL 663
E + +KL
Sbjct: 429 EGTIEYQKL 437
Score = 82 (33.9 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +I+ TEAG +A+R+ R H+ +D AV KV
Sbjct: 384 DGFNGA-DIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422
Score = 73 (30.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 144 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 203
++ QN+R L+ ++ ++ L+ G +GEV+K + ++K +VK ++
Sbjct: 76 QRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGPRYI 128
Query: 204 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
RV L + T+ +ILP + D
Sbjct: 129 VGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETD 164
>SGD|S000005643 [details] [associations]
symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
Uniprot:P33297
Length = 434
Score = 424 (154.3 bits), Expect = 9.5e-69, Sum P(3) = 9.5e-69
Identities = 85/181 (46%), Positives = 114/181 (62%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
PN V + +SY + LP++ D V M V++ P TY VGGLD QI+E+ E I LP+
Sbjct: 142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPM 201
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
K + F +GI PKG L+YGPPGTGKTLLARA A T TF++++ +LVQ +IGEG++
Sbjct: 202 KRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAK 261
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF + +
Sbjct: 262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321
Query: 520 K 520
K
Sbjct: 322 K 322
Score = 267 (99.0 bits), Expect = 9.5e-69, Sum P(3) = 9.5e-69
Identities = 56/111 (50%), Positives = 77/111 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KV+ ATNR+D+LDPALLR GR+DRKIEFP P+E++R IL+IHSRKM IN +++A
Sbjct: 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMS 659
+GA++K V EAGM ALR + V EDF +++V + S K++S
Sbjct: 382 STDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKS-KSVS 431
Score = 72 (30.4 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + +K V EAGM ALR + V EDF +++V
Sbjct: 378 ELARSTDEFNGAQ-LKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422
Score = 42 (19.8 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
PN V + +SY + LP++ D +K+ E
Sbjct: 142 PNDLVGVNKDSYLILDTLPSEFD--SRVKAME 171
Score = 37 (18.1 bits), Expect = 9.5e-69, Sum P(3) = 9.5e-69
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 87 KENKEKLQN 95
K+NKEK++N
Sbjct: 63 KDNKEKIKN 71
>WB|WBGene00015688 [details] [associations]
symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
Length = 438
Score = 437 (158.9 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 84/165 (50%), Positives = 115/165 (69%)
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
+L +K+D VEK P T++ +GG ++QI+E+KE +ELP+ HPE ++ +GI PKG
Sbjct: 160 VLDDKIDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPKG 219
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
V+LYG PGTGKTLLA+AVA+ T TFIR +GS+LVQK GEG+R+VR++F MA+E APSI
Sbjct: 220 VILYGEPGTGKTLLAKAVANSTSATFIRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSI 279
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+F+ VQRT+LELLNQLDGFE+ ++K
Sbjct: 280 VFIDEIDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDVK 324
Score = 275 (101.9 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 56/102 (54%), Positives = 68/102 (66%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNRID LDPAL+RPGRIDRKIE P P+E+ R I IH+ M + + + +
Sbjct: 324 KIIMATNRIDSLDPALIRPGRIDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLG 383
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
SGAE+K VCTEAGM ALR +R V +DFE AV VM
Sbjct: 384 KEKSISGAEIKAVCTEAGMLALRAQRKCVGTDDFEKAVKSVM 425
Score = 93 (37.8 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMA 553
IK VCTEAGM ALR +R V +DFE AV V+++
Sbjct: 393 IKAVCTEAGMLALRAQRKCVGTDDFEKAVKSVMLS 427
Score = 37 (18.1 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 99 GEMDVDEAYTYEVERQRTVDEAIKSSEGFK 128
G D + E E QRT+ E + +GF+
Sbjct: 289 GTKRFDTSSRGEQEVQRTLLELLNQLDGFE 318
>TAIR|locus:2079742 [details] [associations]
symbol:RPT5A "regulatory particle triple-A ATPase 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
sac development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
Length = 424
Score = 426 (155.0 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 85/181 (46%), Positives = 115/181 (63%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + LP++ D V M V++ P Y +GGL+ QI+E+ E I LP+
Sbjct: 132 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPM 191
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A T TF++++G +LVQ FIG+G++
Sbjct: 192 THKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAK 251
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP IIF+ VQRTMLELLNQLDGF + + I
Sbjct: 252 LVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERI 311
Query: 520 K 520
K
Sbjct: 312 K 312
Score = 286 (105.7 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 58/104 (55%), Positives = 70/104 (67%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR DILDPAL+R GR+DRKIEFP P EEAR IL+IHSRKMN+ +N ++A
Sbjct: 312 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELAR 371
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA++K VC EAGM ALR V EDF + +V K
Sbjct: 372 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 415
Score = 85 (35.0 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + +K VC EAGM ALR V EDF + +V
Sbjct: 368 ELARSTDDFNGAQ-LKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 412
>UNIPROTKB|F1MG70 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
Length = 417
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 88 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 147
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 148 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 207
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 208 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 267
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 268 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 305
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 296 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 355
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 356 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 413
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 373 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 406
Score = 53 (23.7 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 27/149 (18%), Positives = 54/149 (36%)
Query: 104 DEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKV 163
DE V R +T + E + Y ++ ++LQ + E ++ ++ L +
Sbjct: 13 DEIPALSVSRPQTGLSFLGEPEDLEDLY-SRYKKLQQELEFLEVQEEYIKDEQKNLKKEF 71
Query: 164 RMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVAL 223
+ +G+ ++ +D+ +V + PN VAL
Sbjct: 72 LHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVAL 131
Query: 224 RNESYTLHKILPNKMDVDEAIKSSEGFKP 252
S L +LP + D + +S+ KP
Sbjct: 132 HKHSNALVDVLPPEADSSIMMLTSDQ-KP 159
>UNIPROTKB|Q3T030 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
ArrayExpress:Q3T030 Uniprot:Q3T030
Length = 418
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 149 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 208
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 209 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 268
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 269 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 374 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 51 (23.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 149 SSIMMLTSDQ-KP 160
>UNIPROTKB|E2RH48 [details] [associations]
symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
Length = 418
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 149 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 208
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 209 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 268
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 269 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 374 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 51 (23.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 149 SSIMMLTSDQ-KP 160
>UNIPROTKB|P43686 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
"ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006521 "regulation of cellular amino acid metabolic process"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=TAS]
Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
Uniprot:P43686
Length = 418
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 149 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 208
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 209 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 268
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 269 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 374 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 51 (23.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 149 SSIMMLTSDQ-KP 160
>UNIPROTKB|Q4R7L3 [details] [associations]
symbol:PSMC4 "26S protease regulatory subunit 6B"
species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
accessory complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
Length = 418
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 149 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 208
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 209 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 268
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 269 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 374 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 51 (23.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 149 SSIMMLTSDQ-KP 160
>MGI|MGI:1346093 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
Uniprot:P54775
Length = 418
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 149 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 208
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 209 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 268
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 269 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 374 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 51 (23.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 149 SSIMMLTSDQ-KP 160
>RGD|621102 [details] [associations]
symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
"blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
GermOnline:ENSRNOG00000018994 Uniprot:Q63570
Length = 418
Score = 457 (165.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 149 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 208
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 209 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 268
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 269 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 254 (94.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + I + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C E+GM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 76 (31.8 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C E+GM A+RE R V +DFE A VI
Sbjct: 374 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 51 (23.0 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + PN VAL S L +LP + D
Sbjct: 89 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 148
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 149 SSIMMLTSDQ-KP 160
>TAIR|locus:2036099 [details] [associations]
symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
development" evidence=IGI] [GO:0009555 "pollen development"
evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
Genevestigator:O04019 Uniprot:O04019
Length = 423
Score = 425 (154.7 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 85/181 (46%), Positives = 115/181 (63%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + LP++ D V M V++ P Y +GGL+ QI+E+ E I LP+
Sbjct: 131 PGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPM 190
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVLLYGPPGTGKTL+ARA A T TF++++G +LVQ FIG+G++
Sbjct: 191 THKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAK 250
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F++A+E +P IIF+ VQRTMLELLNQLDGF + I
Sbjct: 251 LVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRI 310
Query: 520 K 520
K
Sbjct: 311 K 311
Score = 286 (105.7 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 58/104 (55%), Positives = 70/104 (67%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR DILDPAL+R GR+DRKIEFP P EEAR IL+IHSRKMN+ +N ++A
Sbjct: 311 KVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELAR 370
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA++K VC EAGM ALR V EDF + +V K
Sbjct: 371 STDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 414
Score = 85 (35.0 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + +K VC EAGM ALR V EDF + +V
Sbjct: 367 ELARSTDDFNGAQ-LKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 411
>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
symbol:psmc4 "proteasome (prosome, macropain) 26S
subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
Uniprot:Q7SXX0
Length = 418
Score = 461 (167.3 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 99/270 (36%), Positives = 146/270 (54%)
Query: 258 IEELQLIVAEKEQNLRRLQAQRNEL-----NAKVRMLRXXXXXXXXXGS--YVGEVVKPM 310
+E+L I + +Q L L+ Q + N K L +G+ ++ +
Sbjct: 37 LEDLYSIYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAV 96
Query: 311 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMV 370
D+ +V + PN VAL S L +LP + D + ++
Sbjct: 97 DQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTS 156
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
++ PD Y +GG+D Q +E++E +ELP+ H EL+ +GI P+GVL+YGPPG GKT+LA
Sbjct: 157 DQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLA 216
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 217 KAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFD 276
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ N+K
Sbjct: 277 AQTGADREVQRILLELLNQMDGFDQNVNVK 306
Score = 248 (92.4 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 53/118 (44%), Positives = 73/118 (61%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALL PGR+DRKIEFP P+ + + + KMNL+
Sbjct: 297 DGFDQNVNVKVIMATNRADTLDPALLCPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSE 356
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
++L SGA++ +C EAGM A+RE R V +DFE A V++KD +++
Sbjct: 357 EVDLEDYVARPDKISGADINSICQEAGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414
Score = 79 (32.9 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C EAGM A+RE R V +DFE A VI
Sbjct: 374 DINSICQEAGMLAVRENRYIVLAKDFEKAYKTVI 407
Score = 54 (24.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 26/125 (20%), Positives = 45/125 (36%)
Query: 135 IEELQLIVAEKEQNLRRLQAQRNEL-----NAKVRMLRXXXXXXXXXGS--YVGEVVKPM 187
+E+L I + +Q L L+ Q + N K L +G+ ++ +
Sbjct: 37 LEDLYSIYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAV 96
Query: 188 DKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSS 247
D+ +V + PN VAL S L +LP + D + +S
Sbjct: 97 DQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTS 156
Query: 248 EGFKP 252
+ KP
Sbjct: 157 DQ-KP 160
>WB|WBGene00004505 [details] [associations]
symbol:rpt-5 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
Length = 430
Score = 415 (151.1 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 83/181 (45%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GG D QI+E+ E + LP+
Sbjct: 138 PGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPTEQYSDIGGCDKQIQELIEAVVLPM 197
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H + F LGI PKGVL+YGPPGTGKT++ARAVA T+ TF++++G +LVQ FIG+G++
Sbjct: 198 THKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAK 257
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF+ +I
Sbjct: 258 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDI 317
Query: 520 K 520
K
Sbjct: 318 K 318
Score = 291 (107.5 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 57/104 (54%), Positives = 72/104 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNRID+LDPALLR GR+DRKIE P PNE+AR I++IHSRKMN+ + +N ++A
Sbjct: 318 KVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELAR 377
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR + EDF A+ +V K
Sbjct: 378 CTDDFNGAQCKAVCVEAGMIALRRDATEILHEDFMDAILEVQAK 421
Score = 78 (32.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR + EDF A+ +V
Sbjct: 374 ELARCTDDFNGAQ-CKAVCVEAGMIALRRDATEILHEDFMDAILEV 418
Score = 42 (19.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKP 129
++L D ++A EV QRT+ E + +GF+P
Sbjct: 277 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQP 313
>UNIPROTKB|O76371 [details] [associations]
symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
InParanoid:O76371 NextBio:874627 Uniprot:O76371
Length = 430
Score = 415 (151.1 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 83/181 (45%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GG D QI+E+ E + LP+
Sbjct: 138 PGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPTEQYSDIGGCDKQIQELIEAVVLPM 197
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H + F LGI PKGVL+YGPPGTGKT++ARAVA T+ TF++++G +LVQ FIG+G++
Sbjct: 198 THKDRFVNLGIHPPKGVLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAK 257
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF+ +I
Sbjct: 258 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDI 317
Query: 520 K 520
K
Sbjct: 318 K 318
Score = 291 (107.5 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 57/104 (54%), Positives = 72/104 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNRID+LDPALLR GR+DRKIE P PNE+AR I++IHSRKMN+ + +N ++A
Sbjct: 318 KVIAATNRIDVLDPALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELAR 377
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA+ K VC EAGM ALR + EDF A+ +V K
Sbjct: 378 CTDDFNGAQCKAVCVEAGMIALRRDATEILHEDFMDAILEVQAK 421
Score = 78 (32.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + K VC EAGM ALR + EDF A+ +V
Sbjct: 374 ELARCTDDFNGAQ-CKAVCVEAGMIALRRDATEILHEDFMDAILEV 418
Score = 42 (19.8 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKP 129
++L D ++A EV QRT+ E + +GF+P
Sbjct: 277 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQP 313
>FB|FBgn0037742 [details] [associations]
symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
Uniprot:Q9VH79
Length = 405
Score = 470 (170.5 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 104/285 (36%), Positives = 164/285 (57%)
Query: 241 DEAIKSSEGFKPY--YVT--KIE-ELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 295
+++++ +G P+ YV K++ EL+LI + E ++ + QRN L + +
Sbjct: 13 EQSLEKYDGLDPHDLYVLYKKLQMELELIQVQ-EDYIK--EEQRN-LKKEFIHAQEEVKR 68
Query: 296 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 355
+G+ ++ +D+ +V + P+ V L +S L
Sbjct: 69 IKAVPLVIGQFLEAVDENNGIVASTTGSNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVD 128
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
++P + D +S++ ++ PD +Y +GGLD Q +EI+E +ELP+ H +L+ +GI P+G
Sbjct: 129 LVPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRG 188
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLL+GPPG GKT+LA+AVAHHT +FIRV GSE VQK++GEG RMVR+LF +A++++PSI
Sbjct: 189 VLLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSI 248
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IF+ VQR +LELLNQ+DGF+ T NIK
Sbjct: 249 IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIK 293
Score = 233 (87.1 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 52/110 (47%), Positives = 67/110 (60%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFP-PPNEEARLDILRIHSRKMNLTRGINLRKIA 607
KVIMATNR D LDPALLRPGR+DRKIE P P + RL I S KMN+ ++L I
Sbjct: 293 KVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITS-KMNVGEDVDLEDII 351
Query: 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
S A++ +C EAGM+A+RE R V +DFE ++KD ++
Sbjct: 352 ARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSVRKDEAQH 401
Score = 75 (31.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFE 544
+I +C EAGM+A+RE R V +DFE
Sbjct: 361 DINAICQEAGMHAVRENRYVVNAKDFE 387
Score = 45 (20.9 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 24/127 (18%), Positives = 53/127 (41%)
Query: 118 DEAIKSSEGFKPY--YVT--KIE-ELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXX 172
+++++ +G P+ YV K++ EL+LI + E ++ + QRN L + +
Sbjct: 13 EQSLEKYDGLDPHDLYVLYKKLQMELELIQVQ-EDYIK--EEQRN-LKKEFIHAQEEVKR 68
Query: 173 XXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHK 232
+G+ ++ +D+ +V + P+ V L +S L
Sbjct: 69 IKAVPLVIGQFLEAVDENNGIVASTTGSNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVD 128
Query: 233 ILPNKMD 239
++P + D
Sbjct: 129 LVPPEAD 135
>TAIR|locus:2161258 [details] [associations]
symbol:RPT3 "regulatory particle triple-A ATPase 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
"cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
stimulus" evidence=RCA] [GO:0009853 "photorespiration"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
GermOnline:AT5G58290 Uniprot:Q9SEI4
Length = 408
Score = 462 (167.7 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 92/218 (42%), Positives = 132/218 (60%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + P+ VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+SL+ + PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+GVLLYGPP
Sbjct: 139 SSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 198
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKT+LA+AVA+HT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+
Sbjct: 199 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVD 258
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR ++ELLNQ+DGF+ T N+K
Sbjct: 259 AIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK 296
Score = 241 (89.9 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 51/117 (43%), Positives = 73/117 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ V KVIMATNR D LDPALLRPGR+DRKIEFP P+ + + ++ + KMNL+
Sbjct: 287 DGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSD 346
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV-AKVMQKDSE 655
++L S AE+ +C EAGM+A+R+ R + +DFE A V + D++
Sbjct: 347 EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTD 403
Score = 68 (29.0 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFE 544
+ +++ D A + I +C EAGM+A+R+ R + +DFE
Sbjct: 352 DYVSRPDKISAAE-IAAICQEAGMHAVRKNRYVILPKDFE 390
Score = 44 (20.5 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + P+ VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 240 VDEAIKSSEGFKP 252
++ S + KP
Sbjct: 139 SSISLLS-QSEKP 150
>UNIPROTKB|O42587 [details] [associations]
symbol:psmc3-a "26S protease regulatory subunit 6A-A"
species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
Length = 405
Score = 437 (158.9 bits), Expect = 5.7e-67, Sum P(3) = 5.7e-67
Identities = 87/181 (48%), Positives = 116/181 (64%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 131 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 190
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 191 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 250
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E APSIIF+ VQRTMLELLNQLDGF+ +
Sbjct: 251 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQV 310
Query: 520 K 520
K
Sbjct: 311 K 311
Score = 236 (88.1 bits), Expect = 5.7e-67, Sum P(3) = 5.7e-67
Identities = 49/83 (59%), Positives = 59/83 (71%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N ++A
Sbjct: 311 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 370
Query: 609 LMPGASGAEVKGVCTEAGMYALR 631
+ K EAGM ALR
Sbjct: 371 CPTISMALSAKQFGVEAGMIALR 393
Score = 45 (20.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 91 EKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
++L D ++A EV QRT+ E + +GF+P K+
Sbjct: 270 DELDAIGTKRFDSEKAGDREV--QRTMLELLNQLDGFQPNMQVKV 312
Score = 39 (18.8 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGG--LDNQIKEIKEVIELPVK 400
++ +E ++K LP V ++ L+ V+ P+ E LD+Q K VI+ +
Sbjct: 56 KIKENSEKIKVNKTLPYLVSNVIELLDVD--PNDQEEDGANIDLDSQRKGKCAVIKTSTR 113
Query: 401 HPELFDALGI 410
+G+
Sbjct: 114 QTYFLPVIGL 123
Score = 38 (18.4 bits), Expect = 5.7e-67, Sum P(3) = 5.7e-67
Identities = 29/154 (18%), Positives = 62/154 (40%)
Query: 99 GEMDVDEAYTYEV-ERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN 157
GE +V + T E+ +R R +D IK + + VT ELQ + + ++N +++ +
Sbjct: 14 GE-EVLKMSTEEIIQRTRLLDSEIKIMKS-EVLRVT--HELQAMRDKIKENSEKIKVNKT 69
Query: 158 E---LNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXX 214
++ + +L G+ + ++ K ++K +
Sbjct: 70 LPYLVSNVIELLDVDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 128
Query: 215 XTPNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
P V + +SY + + LP + D +K+ E
Sbjct: 129 LKPGDLVGVNKDSYLILETLPT--EYDSRVKAME 160
>CGD|CAL0002261 [details] [associations]
symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
Uniprot:Q5A0X3
Length = 454
Score = 407 (148.3 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 81/181 (44%), Positives = 113/181 (62%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
PN + + +SY + LP++ D V M V++ P Y +GGLD QI+E+ E + LP+
Sbjct: 161 PNDLIGVNKDSYLVLDTLPSEYDSRVKAMEVDEKPTEDYSDIGGLDKQIEELIEAVVLPM 220
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
K + F LGI PKG L+YGPPGTGKTLLARA A + TF++++ +LVQ FIG+G++
Sbjct: 221 KQADKFKNLGIKPPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAK 280
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF + +
Sbjct: 281 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRV 340
Query: 520 K 520
K
Sbjct: 341 K 341
Score = 261 (96.9 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 53/108 (49%), Positives = 75/108 (69%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNL-TRGINLRKIA 607
KV+ ATNR+D LDPALLR GR+DRKIEFP P+EEAR +L+IH+RK++ +N R++A
Sbjct: 341 KVLAATNRVDTLDPALLRSGRLDRKIEFPLPSEEARESVLKIHARKLHCDNNSVNWRELA 400
Query: 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
+GA++K V EAGM ALR + + EDF A+++V + S+
Sbjct: 401 RSTDEFNGAQLKAVTVEAGMIALRNGKSIIKHEDFVEAISEVQARKSK 448
Score = 74 (31.1 bits), Expect = 5.0e-47, Sum P(3) = 5.0e-47
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
EL D F + +K V EAGM ALR + + EDF A+++V
Sbjct: 398 ELARSTDEFNGAQ-LKAVTVEAGMIALRNGKSIIKHEDFVEAISEV 442
Score = 44 (20.5 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 223 LRNESYTL-HK---ILPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKE 269
+R+ES L H+ +L D E I +++ PY V + EL + A+KE
Sbjct: 68 MRSESQRLNHEKTVMLERIKDNQEKINNNKQL-PYLVGNVVELLNLDADKE 117
Score = 44 (20.5 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 88 ENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKE 146
+N K+ + ++ ++ T +ER + E I +++ PY V + EL + A+KE
Sbjct: 62 DNDIKVMRSESQRLNHEK--TVMLERIKDNQEKINNNKQL-PYLVGNVVELLNLDADKE 117
Score = 40 (19.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 217 PNCRVALRNESYTLHKILPNKMDVDEAIKSSE 248
PN + + +SY + LP+ + D +K+ E
Sbjct: 161 PNDLIGVNKDSYLVLDTLPS--EYDSRVKAME 190
>CGD|CAL0005827 [details] [associations]
symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008540 "proteasome regulatory particle, base subcomplex"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
Length = 428
Score = 450 (163.5 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 98/266 (36%), Positives = 145/266 (54%)
Query: 255 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKK 314
++K ++ L + + L+ L+ +L+ G +GEV+K +D ++
Sbjct: 48 LSKFKDKLLEHRKWDARLKDLRLSIRDLDKDYEKTENDIKALQSVGQIIGEVLKQLDDER 107
Query: 315 VLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVP 374
+VK ++ RV+L + T+ +ILP +VDPLV M +
Sbjct: 108 YIVKTSSGPRYIVGCRNTIKKENLKNGVRVSLDMTTLTIMRILPREVDPLVYNMTTFEPG 167
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
+ ++ +GGL QI+E++EVIELP+K+PELF +GI PKGVLLYGPPGTGKTLLA+AVA
Sbjct: 168 EISFNGIGGLTEQIRELREVIELPLKNPELFTRVGIKPPKGVLLYGPPGTGKTLLAKAVA 227
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI S +V K+IGE +R++RE+F A+EH P IIFM
Sbjct: 228 ATIGANFIFSPASAIVDKYIGESARLIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 287
Query: 495 XXXXVQRTMLELLNQLDGFEATKNIK 520
+QRT++ELLNQ+DGF+ K
Sbjct: 288 ADREIQRTLMELLNQMDGFDTLGQTK 313
Score = 243 (90.6 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 52/116 (44%), Positives = 72/116 (62%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
K+IMATNR D LDPALLR GR+DRKIE PNE RL+I +IH+ K+ + +
Sbjct: 313 KIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFEAAVK 372
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKKL 663
+ G +GA+++ V TEAG +A+R+ R ++ Q D AV KV K E + +KL
Sbjct: 373 MSDGFNGADIRNVVTEAGFFAIRDDRDYILQNDLMKAVRKVADVKKLEGKLDYEKL 428
Score = 83 (34.3 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
DGF +I+ V TEAG +A+R+ R ++ Q D AV KV
Sbjct: 375 DGFNGA-DIRNVVTEAGFFAIRDDRDYILQNDLMKAVRKV 413
Score = 77 (32.2 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 35/166 (21%), Positives = 71/166 (42%)
Query: 89 NKEKLQNANEGEMDVDE-AYTYEVERQRTVDE-AIKSSEGFKPYYVTKIEELQLIVAEKE 146
N + NAN G A + ER+R + + K E K + ++++L+L + + +
Sbjct: 19 NNQDSNNANAGSTTTSAPAEPIDPERERALSKFKDKLLEHRK--WDARLKDLRLSIRDLD 76
Query: 147 QNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXX 206
++ + + N++ A G +GEV+K +D ++ +VK ++
Sbjct: 77 KDYEKTE---NDIKA-----------LQSVGQIIGEVLKQLDDERYIVKTSSGPRYIVGC 122
Query: 207 XXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKP 252
RV+L + T+ +ILP +VD + + F+P
Sbjct: 123 RNTIKKENLKNGVRVSLDMTTLTIMRILPR--EVDPLVYNMTTFEP 166
Score = 41 (19.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 105 EAYTYEVERQRTVDEAIKSSEGFKPYYVTKI 135
E + + E QRT+ E + +GF TKI
Sbjct: 284 EGTSADREIQRTLMELLNQMDGFDTLGQTKI 314
>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
symbol:PF11_0314 "26S protease subunit
regulatory subunit 6a, putative" species:5833 "Plasmodium
falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 413 (150.4 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 84/181 (46%), Positives = 112/181 (61%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + LP + D V M V + P Y +GGLD QI+++ E I LP+
Sbjct: 147 PGDLVGVNKDSYLIIDKLPQEYDNRVKAMEVIEKPSEDYSDIGGLDKQIEDLVEAIVLPM 206
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ +GI PKGVL++GPPGTGKTLLARA A T TF++++G +LVQ FIG+G++
Sbjct: 207 LHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAK 266
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
MVR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF +
Sbjct: 267 MVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTV 326
Query: 520 K 520
K
Sbjct: 327 K 327
Score = 281 (104.0 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 56/104 (53%), Positives = 70/104 (67%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR D LDPALLR GR+DRKIE P PNEE+R IL+IHSRKMN+ + +N ++A
Sbjct: 327 KVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELAR 386
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA++K VC EAGM ALR + EDF + V+ K
Sbjct: 387 STDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFVEGITSVLSK 430
Score = 83 (34.3 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL D F + +K VC EAGM ALR + EDF + V+
Sbjct: 383 ELARSTDDFNGAQ-LKAVCVEAGMIALRRGATEIDHEDFVEGITSVL 428
>UNIPROTKB|Q8II60 [details] [associations]
symbol:PF11_0314 "26S protease subunit regulatory subunit
6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
"proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
Length = 439
Score = 413 (150.4 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 84/181 (46%), Positives = 112/181 (61%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + LP + D V M V + P Y +GGLD QI+++ E I LP+
Sbjct: 147 PGDLVGVNKDSYLIIDKLPQEYDNRVKAMEVIEKPSEDYSDIGGLDKQIEDLVEAIVLPM 206
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ +GI PKGVL++GPPGTGKTLLARA A T TF++++G +LVQ FIG+G++
Sbjct: 207 LHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAK 266
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
MVR+ F +A+E AP+IIF+ VQRTMLELLNQLDGF +
Sbjct: 267 MVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTV 326
Query: 520 K 520
K
Sbjct: 327 K 327
Score = 281 (104.0 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 56/104 (53%), Positives = 70/104 (67%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR D LDPALLR GR+DRKIE P PNEE+R IL+IHSRKMN+ + +N ++A
Sbjct: 327 KVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELAR 386
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
+GA++K VC EAGM ALR + EDF + V+ K
Sbjct: 387 STDDFNGAQLKAVCVEAGMIALRRGATEIDHEDFVEGITSVLSK 430
Score = 83 (34.3 bits), Expect = 1.9e-45, Sum P(2) = 1.9e-45
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
EL D F + +K VC EAGM ALR + EDF + V+
Sbjct: 383 ELARSTDDFNGAQ-LKAVCVEAGMIALRRGATEIDHEDFVEGITSVL 428
>WB|WBGene00004503 [details] [associations]
symbol:rpt-3 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
MINT:MINT-212949 STRING:P46502 PaxDb:P46502
EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
Uniprot:P46502
Length = 414
Score = 451 (163.8 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 88/218 (40%), Positives = 132/218 (60%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + P C VAL S L +LP + D
Sbjct: 85 IGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEAD 144
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ PD +Y +GGLD Q +E++E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 145 SSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPP 204
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+AVA +T +FIRV GSE VQK++GEG RMVR++F +A+E++PSIIF+
Sbjct: 205 GCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEID 264
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGF+ + N+K
Sbjct: 265 AIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVK 302
Score = 240 (89.5 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 55/116 (47%), Positives = 72/116 (62%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFP-PPNEEARLDILRIHSRKMNLT 598
+ F+ + KVIMATNR D LDPALLRPGR+DRKIEFP P + RL + SR MNL+
Sbjct: 293 DGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSR-MNLS 351
Query: 599 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654
++L SGA++ +C EAGM A+RE R V +D E A V++KD+
Sbjct: 352 DDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDT 407
Score = 73 (30.8 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+I +C EAGM A+RE R V +D E A V+
Sbjct: 370 DINSICQEAGMQAVRENRYVVLTKDLEKAYKNVV 403
Score = 50 (22.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + P C VAL S L +LP + D
Sbjct: 85 IGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEAD 144
>POMBASE|SPAC3A11.12c [details] [associations]
symbol:rpt5 "19S proteasome regulatory subunit Rpt5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
"endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
Length = 438
Score = 386 (140.9 bits), Expect = 4.7e-65, Sum P(3) = 4.7e-65
Identities = 76/181 (41%), Positives = 111/181 (61%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P + + +SY + LP++ D V M V++ P Y +GGL QI+E+ E I LP+
Sbjct: 146 PGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPM 205
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
+ + F LG+ PKG L++GPPGTGKTLLARA A + TF++++ +LVQ FIG+G++
Sbjct: 206 QQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAK 265
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+VR+ F +A+E +P+IIF+ VQRTMLELLNQLDGF + +
Sbjct: 266 LVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRV 325
Query: 520 K 520
K
Sbjct: 326 K 326
Score = 276 (102.2 bits), Expect = 4.7e-65, Sum P(3) = 4.7e-65
Identities = 57/107 (53%), Positives = 72/107 (67%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVI ATNR+D LDPALLR GR+DRK+EFP PNEEAR+ ILRIHSRKM + IN ++A
Sbjct: 326 KVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELAR 385
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
+GA +K VC EAGM ALR+ + E F + +V + S+
Sbjct: 386 STDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSK 432
Score = 71 (30.1 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
EL D + +K VC EAGM ALR+ + E F + +V M ++
Sbjct: 382 ELARSTDEYNGAM-LKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSK 432
Score = 41 (19.5 bits), Expect = 4.7e-65, Sum P(3) = 4.7e-65
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 57 KNETVVTTITFHNVTIPNREILTAFHKIIRKENKEKLQN 95
+N+ V F +T E T KI KEN+EK+ N
Sbjct: 47 ENDIKVMKSEFQRLT---HEKSTMLEKI--KENQEKISN 80
>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
symbol:PFD0665c "26s proteasome aaa-ATPase
subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
Uniprot:Q8I1V1
Length = 392
Score = 445 (161.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 85/181 (46%), Positives = 123/181 (67%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P+ VAL S+++ ILP++ D + L+ + + P+ Y +GGLD Q +E+KE +ELP+
Sbjct: 99 PSVSVALHRHSHSIVNILPSESDSSIQLLQITERPNVKYTDLGGLDMQKQEMKEAVELPL 158
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
PEL++ +GI P G+L+YGPPGTGKT+L +AVA+ T+ TFI V GSE VQK++GEG R
Sbjct: 159 TCPELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPR 218
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
MVR++F +ARE++PSIIF+ VQR +LELLNQ+DGF+ + N+
Sbjct: 219 MVRDVFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNV 278
Query: 520 K 520
K
Sbjct: 279 K 279
Score = 222 (83.2 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 46/104 (44%), Positives = 63/104 (60%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNR D LDPALLRPGR+DRKIEFP P+ + + I + KMN++ +N+
Sbjct: 279 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVV 338
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
S A++ + EAGM A+R+ R +T DFE ++K
Sbjct: 339 RTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRK 382
Score = 62 (26.9 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFE 544
+I + EAGM A+R+ R +T DFE
Sbjct: 347 DIAAIAQEAGMQAIRKNRYIITANDFE 373
Score = 46 (21.3 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 217 PNCRVALRNESYTLHKILPNKMD 239
P+ VAL S+++ ILP++ D
Sbjct: 99 PSVSVALHRHSHSIVNILPSESD 121
>UNIPROTKB|Q8I1V1 [details] [associations]
symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
Length = 392
Score = 445 (161.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 85/181 (46%), Positives = 123/181 (67%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P+ VAL S+++ ILP++ D + L+ + + P+ Y +GGLD Q +E+KE +ELP+
Sbjct: 99 PSVSVALHRHSHSIVNILPSESDSSIQLLQITERPNVKYTDLGGLDMQKQEMKEAVELPL 158
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
PEL++ +GI P G+L+YGPPGTGKT+L +AVA+ T+ TFI V GSE VQK++GEG R
Sbjct: 159 TCPELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPR 218
Query: 460 MVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
MVR++F +ARE++PSIIF+ VQR +LELLNQ+DGF+ + N+
Sbjct: 219 MVRDVFRLARENSPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNV 278
Query: 520 K 520
K
Sbjct: 279 K 279
Score = 222 (83.2 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 46/104 (44%), Positives = 63/104 (60%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNR D LDPALLRPGR+DRKIEFP P+ + + I + KMN++ +N+
Sbjct: 279 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVV 338
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 652
S A++ + EAGM A+R+ R +T DFE ++K
Sbjct: 339 RTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRK 382
Score = 62 (26.9 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFE 544
+I + EAGM A+R+ R +T DFE
Sbjct: 347 DIAAIAQEAGMQAIRKNRYIITANDFE 373
Score = 46 (21.3 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 217 PNCRVALRNESYTLHKILPNKMD 239
P+ VAL S+++ ILP++ D
Sbjct: 99 PSVSVALHRHSHSIVNILPSESD 121
>ASPGD|ASPL0000036562 [details] [associations]
symbol:AN2904 species:162425 "Emericella nidulans"
[GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
OMA:EDAYSAQ Uniprot:C8VJ79
Length = 422
Score = 464 (168.4 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 94/218 (43%), Positives = 134/218 (61%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V+ + P+ VAL S L ILP + D
Sbjct: 90 IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEAD 149
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
++++ + PD TY VGGLD Q +EI+E +ELP+ H +L+ +GI P+GVLLYGPP
Sbjct: 150 SSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTHFDLYKQIGIDPPRGVLLYGPP 209
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKT+L +AVA+ T +FIRV+GSE VQK++GEG RMVR++F MARE++P+IIF+
Sbjct: 210 GTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEID 269
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR +LELLNQ+DGFE T N+K
Sbjct: 270 AIATKRFDAQTGADREVQRILLELLNQMDGFEQTSNVK 307
Score = 202 (76.2 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 51/118 (43%), Positives = 69/118 (58%)
Query: 541 EDFEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE--EARLDILRIHSRKMNL 597
+ FE KVIMATNR D LDPALLRPGR+DRKIEFP + E RL I S KM+L
Sbjct: 298 DGFEQTSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIAS-KMSL 356
Query: 598 TRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
+ ++L + SGA + + EAG+ A+R+ R ++ Q D E A + ++ E
Sbjct: 357 SPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIQSDLEDAYSAQVKTGQE 414
Score = 59 (25.8 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
I + EAG+ A+R+ R ++ Q D E A + + D L+
Sbjct: 377 IAAIMQEAGLRAVRKNRYNIIQSDLEDAYSAQVKTGQEADRLE 419
Score = 49 (22.3 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V+ + P+ VAL S L ILP + D
Sbjct: 90 IGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEAD 149
Query: 240 VDEAIKSSEGFKP 252
A+ E KP
Sbjct: 150 SSIAMLG-ENEKP 161
>SGD|S000002802 [details] [associations]
symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
"proteasome regulatory particle, base subcomplex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
"proteasome regulatory particle assembly" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
Uniprot:P33298
Length = 428
Score = 450 (163.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 99/259 (38%), Positives = 144/259 (55%)
Query: 267 EKEQNLRRLQA-----QRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHP 321
EKE L LQ ++ L +++ + +G+ ++P+D+ +V
Sbjct: 55 EKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTT 114
Query: 322 EGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV 381
+ P+ VAL S L ILP D +S+M + PD TY V
Sbjct: 115 GMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADV 174
Query: 382 GGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 441
GGLD Q +EI+E +ELP+ +L++ +GI P+GVLLYGPPGTGKT+L +AVA+ T+ F
Sbjct: 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234
Query: 442 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQR 501
IRV+GSE V K++GEG RMVR++F +ARE+APSIIF+ VQR
Sbjct: 235 IRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQR 294
Query: 502 TMLELLNQLDGFEATKNIK 520
++ELL Q+DGF+ + N+K
Sbjct: 295 ILIELLTQMDGFDQSTNVK 313
Score = 204 (76.9 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 54/121 (44%), Positives = 71/121 (58%)
Query: 538 VTQED-FEMAV-AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE--EARLDILRIHSR 593
+TQ D F+ + KVIMATNR D LDPALLRPGR+DRKIEFP + E RL I S
Sbjct: 300 LTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS- 358
Query: 594 KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 653
KM+L +L + SGA + + EAG+ A+R+ R + Q D E A A ++ D
Sbjct: 359 KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 418
Query: 654 S 654
+
Sbjct: 419 N 419
Score = 69 (29.3 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
I + EAG+ A+R+ R + Q D E A A + N +D D
Sbjct: 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFD 425
Score = 53 (23.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 26/115 (22%), Positives = 42/115 (36%)
Query: 144 EKEQNLRRLQA-----QRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHP 198
EKE L LQ ++ L +++ + +G+ ++P+D+ +V
Sbjct: 55 EKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTT 114
Query: 199 EGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIK-SSEGFKP 252
+ P+ VAL S L ILP D D +I E KP
Sbjct: 115 GMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPP--DSDSSISVMGENEKP 167
>CGD|CAL0001552 [details] [associations]
symbol:PR26 species:5476 "Candida albicans" [GO:0005838
"proteasome regulatory particle" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
regulatory particle assembly" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 456 (165.6 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 102/286 (35%), Positives = 160/286 (55%)
Query: 236 NKMDVDEAIKSSEGFKPYYVTKIE-ELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
+K++ A S+E + K+E EL L++ ++E ++ ++ L ++ +
Sbjct: 15 SKLNNVSATNSNETDVYLKLKKLEKELDLLLLQEEY----IKDEQRHLKRELVRAQEEVK 70
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
+G+ ++P+D+ +V + + VAL S L
Sbjct: 71 RIKSVPLVIGQFLEPIDENTGIVSSTTGSNYVVRILSTLDRELLKASSSVALHRHSNALV 130
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
ILP + D +S++ ++ PD TY VGGLD Q +EIKE +ELP+ +L+ +GI P+
Sbjct: 131 DILPPEADSSISIVGEDQKPDVTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPR 190
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKT+L +AVA+ T +FIR++GSE VQK++GEG RMVR++F +ARE++P+
Sbjct: 191 GVLLYGPPGTGKTMLVKAVANSTTASFIRINGSEFVQKYLGEGPRMVRDVFRLARENSPA 250
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIF+ VQR +LELLNQ+DGF+ T +K
Sbjct: 251 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTVK 296
Score = 196 (74.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 49/114 (42%), Positives = 65/114 (57%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE--EARLDILRIHSRKMNLTRGI 601
+ + KVIMATNR D LDPALLRPGR+DRKIEFP + E RL I S KM+L
Sbjct: 291 QTSTVKVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRERRLIFSTIAS-KMSLAPEA 349
Query: 602 NLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
+L + SGA + + EAG+ A+R+ R + Q D E A ++ +E
Sbjct: 350 DLDSLIIRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLEEAYTSQVKTGTE 403
Score = 55 (24.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
I + EAG+ A+R+ R + Q D E A + D D
Sbjct: 366 IAAIMQEAGLRAVRKNRYMILQSDLEEAYTSQVKTGTEHDKFD 408
Score = 48 (22.0 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 134 KIE-ELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKV 192
K+E EL L++ ++E ++ ++ L ++ + +G+ ++P+D+
Sbjct: 36 KLEKELDLLLLQEEY----IKDEQRHLKRELVRAQEEVKRIKSVPLVIGQFLEPIDENTG 91
Query: 193 LVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKP 252
+V + + VAL S L ILP + D +I E KP
Sbjct: 92 IVSSTTGSNYVVRILSTLDRELLKASSSVALHRHSNALVDILPPEADSSISIVG-EDQKP 150
>UNIPROTKB|Q5A0L8 [details] [associations]
symbol:PR26 "Likely 26S proteasome regulatory particle
ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
"proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
Length = 411
Score = 456 (165.6 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 102/286 (35%), Positives = 160/286 (55%)
Query: 236 NKMDVDEAIKSSEGFKPYYVTKIE-ELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXX 294
+K++ A S+E + K+E EL L++ ++E ++ ++ L ++ +
Sbjct: 15 SKLNNVSATNSNETDVYLKLKKLEKELDLLLLQEEY----IKDEQRHLKRELVRAQEEVK 70
Query: 295 XXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLH 354
+G+ ++P+D+ +V + + VAL S L
Sbjct: 71 RIKSVPLVIGQFLEPIDENTGIVSSTTGSNYVVRILSTLDRELLKASSSVALHRHSNALV 130
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
ILP + D +S++ ++ PD TY VGGLD Q +EIKE +ELP+ +L+ +GI P+
Sbjct: 131 DILPPEADSSISIVGEDQKPDVTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPR 190
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPGTGKT+L +AVA+ T +FIR++GSE VQK++GEG RMVR++F +ARE++P+
Sbjct: 191 GVLLYGPPGTGKTMLVKAVANSTTASFIRINGSEFVQKYLGEGPRMVRDVFRLARENSPA 250
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIF+ VQR +LELLNQ+DGF+ T +K
Sbjct: 251 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTVK 296
Score = 196 (74.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 49/114 (42%), Positives = 65/114 (57%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE--EARLDILRIHSRKMNLTRGI 601
+ + KVIMATNR D LDPALLRPGR+DRKIEFP + E RL I S KM+L
Sbjct: 291 QTSTVKVIMATNRADTLDPALLRPGRLDRKIEFPSLKDRRERRLIFSTIAS-KMSLAPEA 349
Query: 602 NLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
+L + SGA + + EAG+ A+R+ R + Q D E A ++ +E
Sbjct: 350 DLDSLIIRNDPLSGAVIAAIMQEAGLRAVRKNRYMILQSDLEEAYTSQVKTGTE 403
Score = 55 (24.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
I + EAG+ A+R+ R + Q D E A + D D
Sbjct: 366 IAAIMQEAGLRAVRKNRYMILQSDLEEAYTSQVKTGTEHDKFD 408
Score = 48 (22.0 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 24/120 (20%), Positives = 47/120 (39%)
Query: 134 KIE-ELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKV 192
K+E EL L++ ++E ++ ++ L ++ + +G+ ++P+D+
Sbjct: 36 KLEKELDLLLLQEEY----IKDEQRHLKRELVRAQEEVKRIKSVPLVIGQFLEPIDENTG 91
Query: 193 LVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKP 252
+V + + VAL S L ILP + D +I E KP
Sbjct: 92 IVSSTTGSNYVVRILSTLDRELLKASSSVALHRHSNALVDILPPEADSSISIVG-EDQKP 150
>UNIPROTKB|J9NWB0 [details] [associations]
symbol:J9NWB0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074818 EMBL:AAEX03014432
Ensembl:ENSCAFT00000039483 OMA:AGSELIQ Uniprot:J9NWB0
Length = 436
Score = 441 (160.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 101/267 (37%), Positives = 146/267 (54%)
Query: 257 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 316
K+E ++ + +E+ +R Q Q L K R V + + +D V+
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTSMSVVTLEEIIDGNHVI 122
Query: 317 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV--- 373
V + P C L ++ + + + + DPLV++M VEKV
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSNLLNHKLHAVIVVFMDDTDPLVTVMKVEKVEKA 182
Query: 374 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 433
P TY + GLDNQI+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGT K AV
Sbjct: 183 PQETYADIRGLDNQIQEIKESLELPLTHPENYEEMGIKPPKGVILYGPPGTVK-----AV 237
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A+ T TF+RV+GSEL+QK++G+G ++VRE F +A EHAPSI+F+
Sbjct: 238 ANRTSATFLRVAGSELIQKYLGDGPKVVRESFRVAEEHAPSIVFIDEIDAIGTRRYDSNS 297
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRTMLELLNQLDGF++ ++K
Sbjct: 298 GGEREIQRTMLELLNQLDGFDSRGDVK 324
Score = 207 (77.9 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 46/107 (42%), Positives = 64/107 (59%)
Query: 549 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAE 608
KVIMATNRI LDPAL + ++ P P+E+ + I +IH+ +M L + L I
Sbjct: 324 KVIMATNRIKTLDPALSHQAALTGRLS-PLPDEKTKKHIFQIHTSRMTLADDVTLDLIMA 382
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
SGA++K +CTEAG+ ALRE R+ VT EDF+ + V+ K E
Sbjct: 383 -KDDLSGADIKAICTEAGLMALREHRMKVTNEDFKKSKENVLYKKQE 428
Score = 99 (39.9 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 504 LELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
L+L+ D +IK +CTEAG+ ALRE R+ VT EDF+ + V+
Sbjct: 377 LDLIMAKDDLSGA-DIKAICTEAGLMALREHRMKVTNEDFKKSKENVL 423
Score = 40 (19.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 28/155 (18%), Positives = 56/155 (36%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 193
K+E ++ + +E+ +R Q Q L K R V + + +D V+
Sbjct: 64 KLERIKDYLLMEEEFIRN-QEQMKPLEEKQEEERSKVDDLRGTSMSVVTLEEIIDGNHVI 122
Query: 194 VKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFKPY 253
V + P C L ++ LH ++ MD + + +
Sbjct: 123 VSTSVGSEHYVSILSFVDKDLLEPGCSNLLNHK---LHAVIVVFMDDTDPLVT------- 172
Query: 254 YVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM 288
V K+E+++ E ++R L Q E+ + +
Sbjct: 173 -VMKVEKVEKAPQETYADIRGLDNQIQEIKESLEL 206
>POMBASE|SPCC576.10c [details] [associations]
symbol:rpt3 "19S proteasome regulatory subunit Rpt3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
Length = 389
Score = 438 (159.2 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 89/218 (40%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ +V + P+ VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPP
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKT+L +AVA+ T FIRV GSE VQK++GEG RMVR++F MARE+AP+IIF+
Sbjct: 178 GTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEID 237
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR ++ELL Q+DGF+ N+K
Sbjct: 238 AIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVK 275
Score = 203 (76.5 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 52/124 (41%), Positives = 76/124 (61%)
Query: 538 VTQED-FEM-AVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE--EARLDILRIHSR 593
+TQ D F+ A KVIMATNR D LDPALLRPGR+DRKIEFP + + RL + + +
Sbjct: 262 LTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRL-VFQTITA 320
Query: 594 KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK- 652
KM L+ ++L +SGA++ + +AG+ A+R+ R + Q D E A A+ ++
Sbjct: 321 KMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPT 380
Query: 653 DSEK 656
D E+
Sbjct: 381 DMEQ 384
Score = 58 (25.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555
I + +AG+ A+R+ R + Q D E A A+ + T+
Sbjct: 345 IAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTD 381
Score = 47 (21.6 bits), Expect = 6.9e-14, Sum P(2) = 6.9e-14
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ +V + P+ VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
>UNIPROTKB|J3QRW1 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC015651
ChiTaRS:PSMC5 HGNC:HGNC:9552 Ensembl:ENST00000579708 Uniprot:J3QRW1
Length = 143
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 115/141 (81%), Positives = 123/141 (87%)
Query: 310 MDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMM 369
+D + + +VHPEGKF TPNCRVALRN+SYTLHKILPNKVDPLVSLMM
Sbjct: 3 LDGPEQVWRVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 62
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
VEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVLLYGPPGTGKTLL
Sbjct: 63 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 122
Query: 430 ARAVAHHTECTFIRVSGSELV 450
ARAVAHHT+CTFIRVSGSELV
Sbjct: 123 ARAVAHHTDCTFIRVSGSELV 143
Score = 155 (59.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/53 (56%), Positives = 36/53 (67%)
Query: 187 MDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+D + + +VHPEGKF TPNCRVALRN+SYTLHKILPNK+D
Sbjct: 3 LDGPEQVWRVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 55
>UNIPROTKB|F1LZ09 [details] [associations]
symbol:F1LZ09 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR005937 Pfam:PF00004 SMART:SM00382
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00780208
Ensembl:ENSRNOT00000039743 Uniprot:F1LZ09
Length = 369
Score = 394 (143.8 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 79/220 (35%), Positives = 124/220 (56%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G+ ++ +D+ V+V PN VAL S TL +LP + +
Sbjct: 38 IGQFLEAVDQNTVIVGSITGSNCYFCILSTIDQELLKPNASVALHKHSNTLVNVLPPEAE 97
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ ++ ++ P+ Y +G +D Q +E+ E +ELP+ H EL+ +GI P+GVL+YGPP
Sbjct: 98 SSIMMLTSDQKPNVIYADIGSMDIQKQEVWEAMELPLTHFELYKQIGIDPPRGVLMYGPP 157
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
G GKT+LA+ VAHH FI V GSE V K++GEG R++ ++F + +E+AP+IIF+
Sbjct: 158 GCGKTMLAKTVAHHMIAAFIHVVGSEFVHKYLGEGPRIIWDVFHLDKENAPAIIFIDEID 217
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGV 522
VQR +LELLNQ+DGF+ ++K +
Sbjct: 218 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNISVKAI 257
Score = 203 (76.5 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 541 EDFEMAVA-KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR 599
+ F+ ++ K IMATNR D LDP LLRPG +D KIEFP P+ RL I S KMNL+
Sbjct: 246 DGFDQNISVKAIMATNRKDTLDPTLLRPGHLDHKIEFPLPDHRKRLIFSTITS-KMNLSE 304
Query: 600 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHV-TQEDFEMAVAKVMQK 652
+N+ SGA++ +C E+GM + E H+ +DF+ A V++K
Sbjct: 305 EVNVEDYVACPDKISGADINSICQESGMLTVCEN-CHIFLAKDFKKAYKTVIKK 357
Score = 53 (23.7 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 518 NIKGVCTEAGMYALRERRVHV-TQEDFEMAVAKVIMATNR 556
+I +C E+GM + E H+ +DF+ A VI N+
Sbjct: 322 DINSICQESGMLTVCEN-CHIFLAKDFKKAYKTVIKKVNK 360
Score = 50 (22.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G+ ++ +D+ V+V PN VAL S TL +LP + +
Sbjct: 38 IGQFLEAVDQNTVIVGSITGSNCYFCILSTIDQELLKPNASVALHKHSNTLVNVLPPEAE 97
Query: 240 VDEAIKSSEGFKP 252
+ +S+ KP
Sbjct: 98 SSIMMLTSDQ-KP 109
>UNIPROTKB|H0YJC0 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
EMBL:AL133453 HGNC:HGNC:9553 Ensembl:ENST00000556813 Uniprot:H0YJC0
Length = 262
Score = 434 (157.8 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 91/212 (42%), Positives = 125/212 (58%)
Query: 267 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 326
E + L+ L+ Q EL + G VGEV+K + ++K +VK ++
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 327 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 386
P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
S +V K+IGE +R++RE+F AR+H P IIFM
Sbjct: 201 SSIVDKYIGESARLIREMFNYARDHQPCIIFM 232
Score = 57 (25.1 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 601 INLRKIAELMPGASGAEVKGVCTEA 625
I+ I +L G +GA+++ VCTEA
Sbjct: 238 IDYEAIVKLSDGFNGADLRNVCTEA 262
>FB|FBgn0028685 [details] [associations]
symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
"proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
activity" evidence=IDA] [GO:0005838 "proteasome regulatory
particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:1901838 "positive regulation of transcription of nuclear large
rRNA transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
regulatory region sequence-specific DNA binding" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
Uniprot:Q8SZ19
Length = 397
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 104/269 (38%), Positives = 149/269 (55%)
Query: 255 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRML---RXXXXXXXXXGSYVGEVVKPMD 311
V + E + + E ++ RL+ +R E+ ++ G VGEV+K +
Sbjct: 14 VKALSEYRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLKQLT 73
Query: 312 KKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 371
+ K +VK ++ RVAL + T+ + LP +VDPLV M E
Sbjct: 74 EDKFIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHE 133
Query: 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 431
D TY +GGL +QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLAR
Sbjct: 134 DPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLAR 193
Query: 432 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXX 491
AVA + F++V S +V K+IGE +R++RE+F AR+H P IIFM
Sbjct: 194 AVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSE 253
Query: 492 XXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRT++ELLNQ+DGF++ +K
Sbjct: 254 GTSADREIQRTLMELLNQMDGFDSLGQVK 282
Score = 283 (104.7 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 68/158 (43%), Positives = 95/158 (60%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED-FE-MAVAKVIMATNRIDILDPAL 564
++++D + +G T A R + Q D F+ + K+IMATNR D LDPAL
Sbjct: 240 MDEIDAIGGRRFSEG--TSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDSLDPAL 297
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
LRPGR+DRKIE P PNE+ARL+IL+IH+ K+ I+ I +L +GA+++ VCTE
Sbjct: 298 LRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTE 357
Query: 625 AGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIK 661
AG++A+R R +V Q DF AV KV K E + K
Sbjct: 358 AGLFAIRAEREYVIQGDFMKAVRKVSDNKKLESKLDYK 395
Score = 67 (28.6 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 24/111 (21%), Positives = 45/111 (40%)
Query: 132 VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRML---RXXXXXXXXXGSYVGEVVKPMD 188
V + E + + E ++ RL+ +R E+ ++ G VGEV+K +
Sbjct: 14 VKALSEYRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLKQLT 73
Query: 189 KKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+ K +VK ++ RVAL + T+ + LP ++D
Sbjct: 74 EDKFIVKATNGPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVD 124
>DICTYBASE|DDB_G0284517 [details] [associations]
symbol:psmC6 "26S protease regulatory subunit S10B"
species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
Length = 393
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 93/222 (41%), Positives = 134/222 (60%)
Query: 300 GSYVGEVVKPMDKKKVLVKVHPEGKFXXX-XXXXXXXXXXTPNCRVALRNESYTLHKILP 358
G +GEV++ +D+++ +VK ++ P RV L + T+ KILP
Sbjct: 57 GEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILP 116
Query: 359 NKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLL 418
+VDP++ M E +Y +GGL NQI+E++EV+ELP+ PELF +GI PKGVLL
Sbjct: 117 REVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLL 176
Query: 419 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
YGPPGTGKTLLARA+A + E F++V S +V K+IGE +R++RE+F AR+H P +IFM
Sbjct: 177 YGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFM 236
Query: 479 XXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
+QRT++ELLNQ+DGF+ +K
Sbjct: 237 DEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVK 278
Score = 290 (107.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 65/160 (40%), Positives = 98/160 (61%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED-FE-MAVAKVIMATNRIDILDPAL 564
++++D + +G T A R + Q D F+ ++ K+IMATNR D+LDPAL
Sbjct: 236 MDEIDAIGGRRFSEG--TSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPAL 293
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
LRPGR+DRKIE P PNE R+D+L+IH+ + ++ IA+L G + A+++ VCTE
Sbjct: 294 LRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTE 353
Query: 625 AGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKKL 663
AGM+A+R R +V +EDF AV K + K E + +K+
Sbjct: 354 AGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLDYQKV 393
Score = 69 (29.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 177 GSYVGEVVKPMDKKKVLVKVHPEGKFXXX-XXXXXXXXXXTPNCRVALRNESYTLHKILP 235
G +GEV++ +D+++ +VK ++ P RV L + T+ KILP
Sbjct: 57 GEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILP 116
Query: 236 NKMD 239
++D
Sbjct: 117 REVD 120
>FB|FBgn0036224 [details] [associations]
symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
NextBio:813228 Uniprot:Q9VTQ9
Length = 398
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 105/287 (36%), Positives = 155/287 (54%)
Query: 234 LPNKMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXX 293
L N DE +++ ++ TK+ E + E E L+ L+ + +NA+
Sbjct: 5 LANPPTDDERVRALTNYR----TKLLEHR----EIESKLKALRDKYKVVNAEYEKSEDDL 56
Query: 294 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTL 353
G VGE++K + +VK ++ P RVAL + T+
Sbjct: 57 KALQSVGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTI 116
Query: 354 HKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP 413
+ LP +VDPLV M E + Y +GGL QI+E++EVIELP+ +P++F +GI+ P
Sbjct: 117 MRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPP 176
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAP 473
KG LLYGPPGTGKTLLARA+A + F++V S +V K+IGE +R++RE+F AR+H P
Sbjct: 177 KGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQP 236
Query: 474 SIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
IIFM +QRT++ELLNQ+DGF+A +K
Sbjct: 237 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVK 283
Score = 281 (104.0 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 66/160 (41%), Positives = 95/160 (59%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED-FE-MAVAKVIMATNRIDILDPAL 564
++++D + +G T A R + Q D F+ + K+IMATNR D LDPAL
Sbjct: 241 MDEIDAIGGRRFSEG--TSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPAL 298
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
LRPGR+DRK+E P PNE AR+DIL+IH+ +N I+ + +L +GA+++ +CTE
Sbjct: 299 LRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTE 358
Query: 625 AGMYALRERRVHVTQEDFEMAVAKVMQ-KDSEKNMSIKKL 663
AG++ALR R V QEDF AV K+ K E + K +
Sbjct: 359 AGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPI 398
Score = 77 (32.2 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 28/124 (22%), Positives = 51/124 (41%)
Query: 116 TVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXX 175
T DE +++ ++ TK+ E + E E L+ L+ + +NA+
Sbjct: 10 TDDERVRALTNYR----TKLLEHR----EIESKLKALRDKYKVVNAEYEKSEDDLKALQS 61
Query: 176 XGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILP 235
G VGE++K + +VK ++ P RVAL + T+ + LP
Sbjct: 62 VGQMVGEILKQLTPDNFIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLP 121
Query: 236 NKMD 239
++D
Sbjct: 122 REVD 125
>UNIPROTKB|F1SN45 [details] [associations]
symbol:SPATA5L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GeneTree:ENSGT00700000104502 GO:GO:0017111 OMA:TWEQIGG
EMBL:CU457441 Ensembl:ENSSSCT00000005157 Uniprot:F1SN45
Length = 755
Score = 468 (169.8 bits), Expect = 6.8e-44, P = 6.8e-44
Identities = 109/311 (35%), Positives = 176/311 (56%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KI P+ ++ LM V+ + T+E +GGL++ +++K+ IE P+K P F +G+ QPK
Sbjct: 445 KIQPSSFRSVIGLMDVKPI---TWEQIGGLEDAKRKLKQSIEWPLKFPREFVRMGLTQPK 501
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPG KT L RA+A C+F+ VSG++L F+G+ +++ ++F AR + P+
Sbjct: 502 GVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKILSQVFQQARANTPA 561
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534
++F+ +R + LLN+LDG K I+ +++
Sbjct: 562 VVFLDEIDSILGSRSISKTGCNVQ-ERVLSVLLNELDGV-GLKTIERRGSKSDQ------ 613
Query: 535 RVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594
H QE F V ++ ATNR D+LD ALLRPGR+D+ I PPP+E++RL ILR+ ++
Sbjct: 614 --HEFQEVFNSNVM-IVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKSRLSILRVCTKN 670
Query: 595 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT---QEDFEMAVAKVMQ 651
M + ++L +A SGA++ +C EA + AL+E + T QE F ++ V
Sbjct: 671 MPVGPDVSLENLAAETCLFSGADLGNLCKEAALLALQENGLEATTVKQEHFLKSLKTVKP 730
Query: 652 KDSEKNMSIKK 662
S K++++ K
Sbjct: 731 SLSHKDLALYK 741
Score = 181 (68.8 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GGL ++E++ LP+ +P F +LG+A P+GVLL GPPG GKT L RAVA
Sbjct: 202 LGGLAEAADSLRELLRLPLLYPRSFASLGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAE 261
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHA---PSIIFM 478
+ VS L GE VR +F A+E A P+++F+
Sbjct: 262 LLAVSAPALQGARPGETEENVRRVFQRAQELAGRRPTLLFL 302
Score = 160 (61.4 bits), Expect = 5.3e-22, Sum P(2) = 5.3e-22
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ +TNR D LDPAL RPGR DR++ P R IL++ + KM ++ ++L +AE+
Sbjct: 342 VVGSTNRPDALDPALRRPGRFDREVVIGTPTLGQRKAILQVITSKMPISSQVDLSLLAEM 401
Query: 610 MPGASGAEVKGVCTEAGMYAL 630
G GA++ +C EA M+AL
Sbjct: 402 TVGYVGADLTALCREAAMHAL 422
Score = 37 (18.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 504 LELLNQLDGFEATKNIKGVCTEAGMYAL 531
L LL ++ ++ +C EA M+AL
Sbjct: 395 LSLLAEMTVGYVGADLTALCREAAMHAL 422
>UNIPROTKB|E9PKD5 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:AC090559 HGNC:HGNC:9549 ChiTaRS:PSMC3
IPI:IPI00978735 ProteinModelPortal:E9PKD5 SMR:E9PKD5 PRIDE:E9PKD5
Ensembl:ENST00000524447 ArrayExpress:E9PKD5 Bgee:E9PKD5
Uniprot:E9PKD5
Length = 294
Score = 356 (130.4 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 71/138 (51%), Positives = 94/138 (68%)
Query: 385 DNQIK--EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
D+++K E+ E I LP+ H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF+
Sbjct: 134 DSRVKAMELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFL 193
Query: 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRT 502
+++G +LVQ FIG+G+++VR+ F +A+E APSIIF+ VQRT
Sbjct: 194 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRT 253
Query: 503 MLELLNQLDGFEATKNIK 520
MLELLNQLDGF+ +K
Sbjct: 254 MLELLNQLDGFQPNTQVK 271
Score = 102 (41.0 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 549 KVIMATNRIDILDPALLRPGRIDR 572
KVI ATNR+DILDPALLR GR+DR
Sbjct: 271 KVIAATNRVDILDPALLRSGRLDR 294
Score = 44 (20.5 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLM-MVEKV 373
P V + +SY + + LP + D V M +VE +
Sbjct: 112 PGDLVGVNKDSYLILETLPTEYDSRVKAMELVEAI 146
Score = 38 (18.4 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 24/141 (17%), Positives = 55/141 (39%)
Query: 111 VERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNE---LNAKVRMLR 167
++R R +D IK + + VT ELQ + + ++N +++ + ++ + +L
Sbjct: 7 IQRTRLLDSEIKIMKS-EVLRVT--HELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 63
Query: 168 XXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNES 227
G+ + ++ K ++K + P V + +S
Sbjct: 64 VDPNDQEEDGANI-DLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDS 122
Query: 228 YTLHKILPNKMDVDEAIKSSE 248
Y + + LP + D +K+ E
Sbjct: 123 YLILETLPT--EYDSRVKAME 141
>UNIPROTKB|A7YSY2 [details] [associations]
symbol:SPATA5L1 "Spermatogenesis-associated protein 5-like
protein 1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 eggNOG:COG0464 HOGENOM:HOG000223225
GeneTree:ENSGT00700000104502 GO:GO:0017111 HOVERGEN:HBG001226
EMBL:BC114696 IPI:IPI00693499 RefSeq:NP_001099095.1
UniGene:Bt.21280 ProteinModelPortal:A7YSY2 PRIDE:A7YSY2
Ensembl:ENSBTAT00000024327 GeneID:533070 KEGG:bta:533070 CTD:79029
InParanoid:A7YSY2 OMA:TWEQIGG OrthoDB:EOG42RD70 NextBio:20875900
Uniprot:A7YSY2
Length = 767
Score = 450 (163.5 bits), Expect = 7.2e-42, P = 7.2e-42
Identities = 110/315 (34%), Positives = 175/315 (55%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KI P+ ++ + ++ V +E +GGL++ ++K+ IE P+K P F +G+ QPK
Sbjct: 445 KIQPSSFRSVIGVTDIKPVG---WEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPK 501
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPG KT L RA+A C+F+ VSG++L F+G+ +++ ++F AR + P+
Sbjct: 502 GVLLYGPPGCAKTTLVRALATSCRCSFVSVSGADLFSPFVGDSEKILSQVFRQARANTPA 561
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI--KGVCTEA-GMYAL 531
I+F+ R + LLN+LDG K I +G ++ G
Sbjct: 562 IVFLDEIDSILGSRSISRTECNVQ-DRVLSVLLNELDGV-GLKTIERRGSKSDQHGKCKQ 619
Query: 532 RERRVHVT-QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRI 590
E+ + QE F V V+ ATNR D+LD ALLRPGR+D+ I PPP+E+ RL IL++
Sbjct: 620 LEKNEELEFQEIFNSNVI-VVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKV 678
Query: 591 HSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT---QEDFEMAVA 647
++ + ++L K+A SGA++ +C EA + AL+E + VT QE F ++
Sbjct: 679 CTKNTPMGPDVSLEKVAAETCFFSGADLGNLCKEAALLALQENGLEVTTVKQEHFLESLK 738
Query: 648 KVMQKDSEKNMSIKK 662
V S K++++ K
Sbjct: 739 TVKPSLSHKDLTLYK 753
Score = 188 (71.2 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 48/126 (38%), Positives = 67/126 (53%)
Query: 361 VDPLVSLMMVEKVPDSTYEM-----VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
V P + + E VP S E +GGL ++E++ LP+++P +LG+ P+G
Sbjct: 178 VTPRTHISLSE-VPPSEEEPQPEVPLGGLSEAADSLRELLRLPLRYPRALASLGLEVPRG 236
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA--- 472
VLL GPPG GKT L RAVA T + VS L GE VR +F ARE A
Sbjct: 237 VLLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRR 296
Query: 473 PSIIFM 478
P+++F+
Sbjct: 297 PTLLFL 302
Score = 160 (61.4 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 37/90 (41%), Positives = 54/90 (60%)
Query: 541 EDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG 600
ED E+ V + +TNR D LDPAL RPGR DR++ P R IL++ + KM ++
Sbjct: 336 EDREVVV---VGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAILQVITSKMPISGQ 392
Query: 601 INLRKIAELMPGASGAEVKGVCTEAGMYAL 630
++L +AE+ G GA++ +C EA M AL
Sbjct: 393 VDLNLLAEMTVGYVGADLTALCREAAMQAL 422
>DICTYBASE|DDB_G0289003 [details] [associations]
symbol:psmC4 "HIV TAT binding-protein-related"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
"proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
GO:GO:0005838 Uniprot:P34123
Length = 403
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 87/218 (39%), Positives = 130/218 (59%)
Query: 303 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 362
+G++++ +D +V+ P+ VAL+ S L LP + D
Sbjct: 74 IGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESD 133
Query: 363 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 422
+ L+ ++ P +Y +GG D Q +E++E +ELP+ H L+ +GI P+GVLLYGPP
Sbjct: 134 SSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPP 193
Query: 423 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXX 482
GTGKT+LA+AVAHHT FIRV GSE VQK++GEG R+VR++F +ARE++P+IIF+
Sbjct: 194 GTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEID 253
Query: 483 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIK 520
VQR ++ELLNQ+DGF+ + N+K
Sbjct: 254 AIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVK 291
Score = 251 (93.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 60/152 (39%), Positives = 90/152 (59%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED-FEMAV-AKVIMATNRIDILDPAL 564
++++D ATK T A R + Q D F+++V KVIMATNR D LDPAL
Sbjct: 249 IDEIDAI-ATKRFDAQ-TGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPAL 306
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
LRPGR+DRKIEFP P+ + I ++ + KMNL+ ++L SGAE++ +C E
Sbjct: 307 LRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQE 366
Query: 625 AGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
AGM+A+R+ R + +DFE ++K++ +
Sbjct: 367 AGMHAIRKNRYVILPKDFEKGYKASIKKNTHE 398
Score = 37 (18.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 180 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKMD 239
+G++++ +D +V+ P+ VAL+ S L LP + D
Sbjct: 74 IGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESD 133
>TAIR|locus:2831844 [details] [associations]
symbol:AtCDC48C "cell division cycle 48C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
Uniprot:Q9LZF6
Length = 810
Score = 319 (117.4 bits), Expect = 3.5e-41, Sum P(3) = 3.5e-41
Identities = 65/176 (36%), Positives = 99/176 (56%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
+A+ NE + H L N +P V +VP+ ++E +GGL+N +E++E ++ PV+HPE
Sbjct: 448 MAVSNEHF--HTALGNS-NPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPE 504
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI V G EL+ + GE VRE
Sbjct: 505 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRE 564
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+F AR+ AP ++F R + +LL ++DG A K +
Sbjct: 565 IFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTV 620
Score = 288 (106.4 bits), Expect = 3.5e-38, Sum P(4) = 3.5e-38
Identities = 56/149 (37%), Positives = 93/149 (62%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E++ + Y+ VGG+ Q+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++APSIIF+
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 318
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG ++ ++
Sbjct: 319 TNGEVE---RRIVSQLLTLMDGLKSRAHV 344
Score = 187 (70.9 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 38/92 (41%), Positives = 60/92 (65%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+I+ P+E RL++LRIH++ M L ++L +I++
Sbjct: 346 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKD 405
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +CTEA + +RE+ + ED
Sbjct: 406 THGYVGADLAALCTEAALQCIREKMDVIDLED 437
Score = 182 (69.1 bits), Expect = 3.5e-41, Sum P(3) = 3.5e-41
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+D ALLRPGR+D+ I P P+E++RL+I + RK + + +++ +A+
Sbjct: 622 IIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKY 681
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A YA+RE
Sbjct: 682 TQGFSGADITEICQRACKYAIRE 704
Score = 56 (24.8 bits), Expect = 3.5e-41, Sum P(3) = 3.5e-41
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI + T +E+LQL
Sbjct: 27 PNRLVVDEAINDDNSVVSLHPTTMEKLQL 55
Score = 45 (20.9 bits), Expect = 3.5e-38, Sum P(4) = 3.5e-38
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQED 542
++ +CTEA + +RE+ + ED
Sbjct: 413 DLAALCTEAALQCIREKMDVIDLED 437
Score = 42 (19.8 bits), Expect = 9.1e-40, Sum P(4) = 9.1e-40
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI + T +E+LQL
Sbjct: 32 VDEAINDDNSVVSLHPTTMEKLQL 55
Score = 40 (19.1 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 506 LLNQLDGFEATKNIKGVCTEAGMYALRE 533
L GF +I +C A YA+RE
Sbjct: 678 LAKYTQGFSGA-DITEICQRACKYAIRE 704
Score = 38 (18.4 bits), Expect = 9.1e-40, Sum P(4) = 9.1e-40
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 257 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299
Score = 38 (18.4 bits), Expect = 2.6e-39, Sum P(3) = 2.6e-39
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 257 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299
>UNIPROTKB|Q9BVQ7 [details] [associations]
symbol:SPATA5L1 "Spermatogenesis-associated protein 5-like
protein 1" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005737 HSSP:Q01853 eggNOG:COG0464 HOGENOM:HOG000223225
GO:GO:0017111 EMBL:AC025580 HOVERGEN:HBG001226 CTD:79029
OMA:TWEQIGG OrthoDB:EOG42RD70 EMBL:AK022348 EMBL:AK023232
EMBL:AK291457 EMBL:AC090527 EMBL:BC000981 IPI:IPI00031608
IPI:IPI00386906 IPI:IPI00890778 RefSeq:NP_076968.2
UniGene:Hs.369657 ProteinModelPortal:Q9BVQ7 SMR:Q9BVQ7
STRING:Q9BVQ7 PhosphoSite:Q9BVQ7 DMDM:292495038 PaxDb:Q9BVQ7
PRIDE:Q9BVQ7 Ensembl:ENST00000305560 Ensembl:ENST00000531970
Ensembl:ENST00000559860 GeneID:79029 KEGG:hsa:79029 UCSC:uc001zve.3
GeneCards:GC15P045694 H-InvDB:HIX0012209 HGNC:HGNC:28762
HPA:HPA043679 neXtProt:NX_Q9BVQ7 PharmGKB:PA134923477
InParanoid:Q9BVQ7 PhylomeDB:Q9BVQ7 GenomeRNAi:79029 NextBio:67739
Bgee:Q9BVQ7 CleanEx:HS_SPATA5L1 Genevestigator:Q9BVQ7
Uniprot:Q9BVQ7
Length = 753
Score = 443 (161.0 bits), Expect = 3.8e-41, P = 3.8e-41
Identities = 109/314 (34%), Positives = 176/314 (56%)
Query: 356 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
I P+ ++ LM ++ V +E +GGL++ ++K+ IE P+K P F +G+ QPKG
Sbjct: 444 IQPSSFRSVIGLMDIKPVD---WEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKG 500
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
VLLYGPPG KT L RA+A C+F+ VSG++L F+G+ +++ ++F AR P+I
Sbjct: 501 VLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAI 560
Query: 476 IFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535
+F+ +R + LLN+LDG K I+ G + ++
Sbjct: 561 LFLDEIDSILGARSASKTGCDVQ-ERVLSVLLNELDGV-GLKTIE----RRGSKSSQQE- 613
Query: 536 VHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM 595
QE F +V +I ATNR D+LD ALLRPGR+D+ I PPP+ + RL IL++ ++ M
Sbjct: 614 ---FQEVFNRSVM-IIAATNRPDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTM 669
Query: 596 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT---QEDFEMAVAKVMQK 652
+ ++L +A SGA+++ +CTEA + AL+E + T QE F ++ V
Sbjct: 670 PIGPDVSLENLAAETCFFSGADLRNLCTEAALLALQENGLDATTVKQEHFLKSLKTVKPS 729
Query: 653 DSEKNMSI-KKLWK 665
S K++++ + L+K
Sbjct: 730 LSCKDLALYENLFK 743
Score = 194 (73.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 43/101 (42%), Positives = 58/101 (57%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GGL ++E++ LP+++P ALG+A P+GVLL GPPG GKT L RAVA
Sbjct: 202 LGGLSEAADSLRELLRLPLRYPRALTALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAE 261
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHA---PSIIFM 478
+ VS L GE VR +F ARE A PS++F+
Sbjct: 262 LLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFL 302
Score = 169 (64.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D LDPAL RPGR DR++ P + R +IL++ + KM ++ ++L +AE+
Sbjct: 340 VVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKEILQVITSKMPISSHVDLGLLAEM 399
Query: 610 MPGASGAEVKGVCTEAGMYAL 630
G GA++ +C EA M+AL
Sbjct: 400 TVGYVGADLTALCREAAMHAL 420
>UNIPROTKB|F6UUI0 [details] [associations]
symbol:SPATA5L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GeneTree:ENSGT00700000104502 GO:GO:0017111 OMA:TWEQIGG
Ensembl:ENSCAFT00000021792 EMBL:AAEX03016099 Uniprot:F6UUI0
Length = 789
Score = 442 (160.7 bits), Expect = 6.1e-41, P = 6.1e-41
Identities = 106/309 (34%), Positives = 172/309 (55%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KI P+ ++ LM ++ V +E +GGL++ ++K+ IE P+K P F +G+ QPK
Sbjct: 479 KIQPSSFRSVIGLMDIKPVD---WEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPK 535
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGPPG KT L RA+A C+F+ VSG++L F+G+ +++ ++F AR + P+
Sbjct: 536 GVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQVFRQARANTPA 595
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534
I+F+ +R + LLN+LDG G+ T + ++
Sbjct: 596 IVFLDEIDSILGSRSISKTECNVQ-ERVLSVLLNELDGV-------GLKTTERRGSKSDQ 647
Query: 535 RVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594
+ QE F V ++ ATNR D+LD ALLRPGR+D+ I PPP+E+ RL IL++ ++
Sbjct: 648 QEF--QEVFNRNVM-IVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCTKN 704
Query: 595 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT---QEDFEMAVAKVMQ 651
M + ++L IA SGA++ +C EA + AL+E + T QE F ++ V
Sbjct: 705 MPMGPDVSLENIAAETCFFSGADLGNLCKEAALLALQENGLEATTVKQEHFLKSLKTVKP 764
Query: 652 KDSEKNMSI 660
S +++++
Sbjct: 765 SLSPEDLTL 773
Score = 188 (71.2 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 42/101 (41%), Positives = 58/101 (57%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GGL ++E++ LP+++P ALG+A P+GVLL GPPG GKT L RAVA
Sbjct: 236 LGGLSEAADSLRELLRLPLRYPRTLAALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAE 295
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHA---PSIIFM 478
+ VS L GE VR +F ARE A P+++F+
Sbjct: 296 LLAVSAPALQGARPGETEENVRRVFGRARELASRGPTLLFL 336
Score = 162 (62.1 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ +TNR D LDPAL RPGR DR++ P + R IL++ + KM ++ ++L +AE+
Sbjct: 376 VVASTNRPDALDPALRRPGRFDREVVIGTPTLKQRKAILQVITSKMPISSQVDLSLLAEM 435
Query: 610 MPGASGAEVKGVCTEAGMYAL 630
G GA++ +C EA ++AL
Sbjct: 436 TVGYVGADLTALCREAALHAL 456
>UNIPROTKB|Q5LNU8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 281 (104.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 57/152 (37%), Positives = 91/152 (59%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M+ EK T++ V G+D +E++E++E +++P+ F LG PKG LL GPPGTGKT
Sbjct: 145 MLTEKHGRVTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKT 203
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLARA+A F +SGS+ V+ F+G G+ VR++F A+++AP I+F+
Sbjct: 204 LLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRH 263
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGFEA + +
Sbjct: 264 RGAGYGGGNDEREQTLNQLLVEMDGFEANEGV 295
Score = 227 (85.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 54/122 (44%), Positives = 71/122 (58%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + FE +I+A TNR D+LDPALLRPGR DR + P+ + R IL +H+RK
Sbjct: 284 VEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTP 343
Query: 597 LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L ++LR IA PG SGA++ + EA + A R R VT EDFE A KVM +
Sbjct: 344 LGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDFENAKDKVMMGAERR 403
Query: 657 NM 658
+M
Sbjct: 404 SM 405
Score = 69 (29.3 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
GF ++ + EA + A R R VT EDFE A KV+M R
Sbjct: 359 GFSGA-DLANLVNEAALMAARVGRRFVTMEDFENAKDKVMMGAER 402
>TIGR_CMR|SPO_3105 [details] [associations]
symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
Uniprot:Q5LNU8
Length = 639
Score = 281 (104.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 57/152 (37%), Positives = 91/152 (59%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M+ EK T++ V G+D +E++E++E +++P+ F LG PKG LL GPPGTGKT
Sbjct: 145 MLTEKHGRVTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKT 203
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLARA+A F +SGS+ V+ F+G G+ VR++F A+++AP I+F+
Sbjct: 204 LLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRH 263
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGFEA + +
Sbjct: 264 RGAGYGGGNDEREQTLNQLLVEMDGFEANEGV 295
Score = 227 (85.0 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 54/122 (44%), Positives = 71/122 (58%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + FE +I+A TNR D+LDPALLRPGR DR + P+ + R IL +H+RK
Sbjct: 284 VEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGREKILGVHARKTP 343
Query: 597 LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
L ++LR IA PG SGA++ + EA + A R R VT EDFE A KVM +
Sbjct: 344 LGPDVDLRIIARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDFENAKDKVMMGAERR 403
Query: 657 NM 658
+M
Sbjct: 404 SM 405
Score = 69 (29.3 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
GF ++ + EA + A R R VT EDFE A KV+M R
Sbjct: 359 GFSGA-DLANLVNEAALMAARVGRRFVTMEDFENAKDKVMMGAER 402
>POMBASE|SPBC56F2.07c [details] [associations]
symbol:SPBC56F2.07c "ribosome biogenesis factor
recycling AAA family ATPase (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=ISM] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
PomBase:SPBC56F2.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 PIR:T40537
RefSeq:NP_596710.1 HSSP:Q01853 ProteinModelPortal:O60058
PRIDE:O60058 EnsemblFungi:SPBC56F2.07c.1 GeneID:2540537
KEGG:spo:SPBC56F2.07c eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
OMA:SSENMAT OrthoDB:EOG49CTH0 NextBio:20801663 GO:GO:0042273
Uniprot:O60058
Length = 809
Score = 287 (106.1 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
Identities = 61/151 (40%), Positives = 85/151 (56%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
M+E P+ + +GG + +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+
Sbjct: 539 MMES-PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTI 597
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
A+A+A T FI V G EL KF+GE R VR++F AR+ +PS+IF
Sbjct: 598 TAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANR 657
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + LLN+LDG EA +N+
Sbjct: 658 GEDNSS-----DRVVAALLNELDGIEALRNV 683
Score = 262 (97.3 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 88/296 (29%), Positives = 135/296 (45%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAE 336
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
+ G +V K++GE +R++F AR H PSIIF+
Sbjct: 337 ANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAE 396
Query: 497 XXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKVIMAT 554
T+L LL DG + + ++ E RR +++ E+ + +
Sbjct: 397 SRAVATLLTLL---DGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPD---KS 450
Query: 555 NRIDILDPALLR-PGRI-DRKIEFPPPNEEARL--DILRIHSRKMNLTRGINLRKIAELM 610
R+DI+ L P I D ++E A + D+ + R+ L R I R I+ L
Sbjct: 451 ARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAV-VREAAL-RAIK-RTIS-LQ 506
Query: 611 PGASGAEVKGVCTEAGM-YALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
SG ++ G + +AL R +E F M V D +K+ K
Sbjct: 507 KDTSGLDIFGAVQMDDLEFALSSVRQSAMRE-FMMESPNVHWSDIGGQEEVKQKLK 561
Score = 215 (80.7 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
Identities = 47/109 (43%), Positives = 67/109 (61%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D++DPAL+RPGR+DR + PPN EAR I++I + KM ++L IAE
Sbjct: 685 VLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEK 744
Query: 610 MPGASGAEVKGVCTEAGMYALRE--RRVHVTQEDFE---MAVAKVMQKD 653
G SGAEV +C EAG+ A+ E + Q F+ +A+ K + +D
Sbjct: 745 TEGCSGAEVVALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKAITRD 793
Score = 47 (21.6 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 504 LELL-NQLDGFEATKNIKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKVIMATNRIDIL 560
L+L+ + +G + + +C EAG+ A+ E + Q F+ A+ + A R D+L
Sbjct: 738 LDLIAEKTEGCSGAE-VVALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKAITR-DML 795
Query: 561 D 561
+
Sbjct: 796 E 796
Score = 41 (19.5 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 9 IYLSQKLKLSEVIEPENLLEMLVYNGYLTAIPSQTKDVPLKRKMPGQNKNET 60
I++ L E I +L E +Y TA S + P K+P +++ ++
Sbjct: 208 IHIRSPSNLIEAISDMSLDEPRIYK--FTAASSMEIETPDLLKLPHEDRTQS 257
>RGD|1595990 [details] [associations]
symbol:Spata5l1 "spermatogenesis associated 5-like 1"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
RGD:1595990 GO:GO:0005524 GeneTree:ENSGT00700000104502
GO:GO:0017111 EMBL:CH473949 CTD:79029 OrthoDB:EOG42RD70
IPI:IPI00357915 RefSeq:NP_001103117.1 UniGene:Rn.151898
Ensembl:ENSRNOT00000043414 GeneID:691729 KEGG:rno:691729
UCSC:RGD:1595990 NextBio:743659 Uniprot:D4A2B7
Length = 747
Score = 435 (158.2 bits), Expect = 3.1e-39, P = 3.1e-39
Identities = 100/315 (31%), Positives = 173/315 (54%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
K+ P+ + L + V +E +GGL++ ++K+ +E P+K P+ F +G+ QPK
Sbjct: 438 KVQPSSFRSSIGLTDIRPVG---WEQIGGLEDVKLKLKQCVEWPLKFPQEFARMGLTQPK 494
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
G+LLYGPPG KT L RA+A C+F+ V G++L F+G+ +++ ++F AR + P+
Sbjct: 495 GLLLYGPPGCAKTTLVRALATSCHCSFVSVCGADLFSPFVGDSEKVLSQVFRQARANTPA 554
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534
++F+ +R + LLN+LDG + ++ G A ++
Sbjct: 555 LVFLDEIDSVLGSRSVGSSGCDAR-ERVLSVLLNELDGV-GVRTVE----RRGSKASQQE 608
Query: 535 RVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594
QE +V +++ATNR D+LD ALLRPGR+D+ + PPP+ E RL IL++ +
Sbjct: 609 ----CQEILSRSVM-IVVATNRPDVLDDALLRPGRLDKMVYVPPPDREGRLSILKVCTNN 663
Query: 595 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT---QEDFEMAVAKVMQ 651
M + ++L +A SGA+++ +C EA ++AL+E + T QE F A+ V
Sbjct: 664 MPIGLNVSLENLAAETCYFSGADLRNLCKEAALFALQENGLEATTVEQEHFTEALKTVKP 723
Query: 652 KDSEKNMSI-KKLWK 665
+ K+++ + L+K
Sbjct: 724 SLTLKDLTFYENLFK 738
Score = 182 (69.1 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 47/126 (37%), Positives = 67/126 (53%)
Query: 360 KVDPLVSLMMVEKVPDSTY---EM-VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 415
+V P + + +K P E+ +GGL ++E++ LP+ +P ALG+A P+G
Sbjct: 170 RVTPHTRITLSDKPPPQVEPPGEVTLGGLSETADSLRELLRLPLCYPLALAALGLAVPRG 229
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA--- 472
VLL GPPG GKT L RAVA + VS L GE VR +F A+E A
Sbjct: 230 VLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGTRPGETEENVRRVFQRAQELASRG 289
Query: 473 PSIIFM 478
PS++F+
Sbjct: 290 PSLLFL 295
Score = 153 (58.9 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D LDPAL RPGR DR++ P + R IL + + KM ++ I+L +AE+
Sbjct: 335 VVGATNRPDELDPALRRPGRFDREVIIGTPTLKQREAILGVITSKMPISSHIDLGLLAEM 394
Query: 610 MPGASGAEVKGVCTEAGMYAL--RERRVH---VTQEDFEMAVAKVMQKDSEKNMSI 660
G GA++ +C EA AL E+ + + + DF A KV ++ +
Sbjct: 395 TVGYVGADLTALCREAATCALLKNEKNQNNPKIEETDFLEAFKKVQPSSFRSSIGL 450
>UNIPROTKB|E2QSC5 [details] [associations]
symbol:SPATA5L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 Ensembl:ENSCAFT00000021792 Uniprot:E2QSC5
Length = 747
Score = 432 (157.1 bits), Expect = 8.9e-39, P = 8.9e-39
Identities = 106/311 (34%), Positives = 173/311 (55%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KI P+ ++ LM ++ V +E +GGL++ ++K+ IE P+K P F +G+ QPK
Sbjct: 435 KIQPSSFRSVIGLMDIKPVD---WEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPK 491
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMV--RELFVMAREHA 472
GVLLYGPPG KT L RA+A C+F+ VSG++L F+G+ +++ +++F AR +
Sbjct: 492 GVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQQKVFRQARANT 551
Query: 473 PSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532
P+I+F+ +R + LLN+LDG G+ T +
Sbjct: 552 PAIVFLDEIDSILGSRSISKTECNVQ-ERVLSVLLNELDGV-------GLKTTERRGSKS 603
Query: 533 ERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHS 592
+++ QE F V ++ ATNR D+LD ALLRPGR+D+ I PPP+E+ RL IL++ +
Sbjct: 604 DQQEF--QEVFNRNVM-IVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCT 660
Query: 593 RKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT---QEDFEMAVAKV 649
+ M + ++L IA SGA++ +C EA + AL+E + T QE F ++ V
Sbjct: 661 KNMPMGPDVSLENIAAETCFFSGADLGNLCKEAALLALQENGLEATTVKQEHFLKSLKTV 720
Query: 650 MQKDSEKNMSI 660
S +++++
Sbjct: 721 KPSLSPEDLTL 731
Score = 188 (71.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 42/101 (41%), Positives = 58/101 (57%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GGL ++E++ LP+++P ALG+A P+GVLL GPPG GKT L RAVA
Sbjct: 192 LGGLSEAADSLRELLRLPLRYPRTLAALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAE 251
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHA---PSIIFM 478
+ VS L GE VR +F ARE A P+++F+
Sbjct: 252 LLAVSAPALQGARPGETEENVRRVFGRARELASRGPTLLFL 292
Score = 162 (62.1 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ +TNR D LDPAL RPGR DR++ P + R IL++ + KM ++ ++L +AE+
Sbjct: 332 VVASTNRPDALDPALRRPGRFDREVVIGTPTLKQRKAILQVITSKMPISSQVDLSLLAEM 391
Query: 610 MPGASGAEVKGVCTEAGMYAL 630
G GA++ +C EA ++AL
Sbjct: 392 TVGYVGADLTALCREAALHAL 412
>UNIPROTKB|F1NG80 [details] [associations]
symbol:SPATA5L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GeneTree:ENSGT00700000104502 GO:GO:0017111 OMA:TWEQIGG
EMBL:AADN02041604 IPI:IPI00596203 Ensembl:ENSGALT00000009112
Uniprot:F1NG80
Length = 748
Score = 432 (157.1 bits), Expect = 9.0e-39, P = 9.0e-39
Identities = 105/285 (36%), Positives = 158/285 (55%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KI P+ + L + + T+E +GGL++ ++K+ +E P+K P+ F +G+A+PK
Sbjct: 442 KIQPSSFRSAIGLKECKPI---TWEQIGGLEDVKLKLKQSVEWPMKLPQAFARMGLARPK 498
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
GVLLYGP G KT L +AVA C+F+ VSG+EL ++G+ +++ ++F AR + P+
Sbjct: 499 GVLLYGPSGCAKTTLVKAVATSCHCSFLSVSGAELFSPYVGDSEKILSQVFRQARANTPA 558
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRER 534
IIF+ +R + LLN+LDG +K V G E
Sbjct: 559 IIFLDEIDSILGSRSHSKSGHGVS-ERVLSVLLNELDGV----GLK-VTERRGNKLQLEL 612
Query: 535 RVHVT-QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSR 593
T DF M VA ATNR D+LD ALLRPGR+DR I PPP+ + RL IL+I +
Sbjct: 613 EFQETLSRDF-MVVA----ATNRPDMLDDALLRPGRLDRVIYIPPPDLKGRLSILKICTE 667
Query: 594 KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 638
K+ L ++L+ IA SGA+++ +C EA + AL+E + T
Sbjct: 668 KIPLDTDVSLQDIAARTDLFSGADIENLCKEAALLALQENGLEAT 712
Score = 193 (73.0 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 42/122 (34%), Positives = 68/122 (55%)
Query: 361 VDPLVSLMMVEKVPDSTYEM-VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
+ +++L + + T ++ V GLD+ + +KE+++LP + P F LG++ P GVLL
Sbjct: 178 IKEVITLERYRLLTEDTAKIPVAGLDDVGESLKEMVDLPFRFPRTFKKLGLSVPNGVLLV 237
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARE---HAPSII 476
GPPG GKTLL +AVA + +SG L GE +R +F RE P+++
Sbjct: 238 GPPGVGKTLLVKAVAREAGAYLLCISGPALYGSRPGESEENLRSVFEKGREMSCEGPTVL 297
Query: 477 FM 478
F+
Sbjct: 298 FI 299
Score = 172 (65.6 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 42/118 (35%), Positives = 62/118 (52%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D LDPAL RPGR DR++ P R IL++ + M ++ I+L K+AE+
Sbjct: 339 VVAATNRPDALDPALRRPGRFDREVIIGTPTLTQRRSILQMLTCSMPISTDIDLVKLAEM 398
Query: 610 MPGASGAEVKGVCTEAGMYA-----LRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
G GA++ +C EA M A L V + DF+ A K+ + +K+
Sbjct: 399 TTGYVGADLTALCREAAMQAVFHSSLDSAEVLINMADFQEAFKKIQPSSFRSAIGLKE 456
Score = 37 (18.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 512 GFEATKNIKGVCTEAGMYAL 531
G T +K V EAG Y L
Sbjct: 241 GVGKTLLVKAVAREAGAYLL 260
>TAIR|locus:2101933 [details] [associations]
symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
regulation of protein catabolic process" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
Uniprot:Q9SCN8
Length = 815
Score = 306 (112.8 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 57/150 (38%), Positives = 88/150 (58%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP+ ++E +GGL+N +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLL
Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 532 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + +LL ++DG A K +
Sbjct: 592 NSVGDAGGAADRVLNQLLTEMDGMNAKKTV 621
Score = 288 (106.4 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 56/149 (37%), Positives = 93/149 (62%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E++ + Y+ VGG+ Q+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++APSIIF+
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG ++ ++
Sbjct: 320 THGEVE---RRIVSQLLTLMDGLKSRAHV 345
Score = 205 (77.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 56/157 (35%), Positives = 89/157 (56%)
Query: 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM--ATNRIDILDPALL 565
++LD AT+ V +AG A R +T+ D A V + ATNR DI+DPALL
Sbjct: 581 DELDSI-ATQRGNSV-GDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALL 638
Query: 566 RPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 625
RPGR+D+ I P P+EE+R I + RK + + ++LR +A+ G SGA++ +C +
Sbjct: 639 RPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRS 698
Query: 626 GMYALRERRVHVTQEDFEMAVA-KVMQKDSEKNMSIK 661
YA+RE +++ + A + + M++D E+ IK
Sbjct: 699 CKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAEIK 735
Score = 187 (70.9 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 39/108 (36%), Positives = 68/108 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+I+ P+E RL++LRIH++ M L ++L ++++
Sbjct: 347 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKD 406
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
G GA++ +CTEA + +RE+ + +D E+ A+++ + N
Sbjct: 407 THGYVGADLAALCTEAALQCIREKMDVIDLDDEEID-AEILNSMAVSN 453
Score = 45 (20.9 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEM 545
++ +CTEA + +RE+ + +D E+
Sbjct: 414 DLAALCTEAALQCIREKMDVIDLDDEEI 441
Score = 43 (20.2 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 236 NKMDVDEAIKSSEGFKPYYVTKIEELQL 263
N++ VDEAI + +E+LQL
Sbjct: 29 NRLVVDEAINDDNSVVSLHPDTMEKLQL 56
Score = 38 (18.4 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 258 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
Score = 38 (18.4 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 258 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300
>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
symbol:vcp "valosin containing protein"
species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
break" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:2000058 "regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
Length = 806
Score = 297 (109.6 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 56/150 (37%), Positives = 88/150 (58%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP+ T+E +GGLD+ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPNITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG + KN+
Sbjct: 588 GNVGDGGGAADRVINQILTEMDGMSSKKNV 617
Score = 286 (105.7 bits), Expect = 1.5e-37, Sum P(4) = 1.5e-37
Identities = 51/108 (47%), Positives = 78/108 (72%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG+ Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 184 (69.8 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 36/83 (43%), Positives = 59/83 (71%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK +++ ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 51 (23.0 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDE+I K++ELQL
Sbjct: 23 PNRLIVDESINEDNSVVSLSQAKMDELQL 51
Score = 44 (20.5 bits), Expect = 1.5e-37, Sum P(4) = 1.5e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 4.9e-37, Sum P(3) = 4.9e-37
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 6.7e-37, Sum P(4) = 6.7e-37
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 37 (18.1 bits), Expect = 6.7e-37, Sum P(4) = 6.7e-37
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDE+I K++ELQL
Sbjct: 28 VDESINEDNSVVSLSQAKMDELQL 51
>CGD|CAL0002187 [details] [associations]
symbol:orf19.6432 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
CGD:CAL0002187 GO:GO:0005524 EMBL:AACQ01000073 EMBL:AACQ01000072
eggNOG:COG0464 KO:K14575 GO:GO:0017111 InterPro:IPR009010
SUPFAM:SSF50692 SMART:SM01073 RefSeq:XP_716187.1 RefSeq:XP_716270.1
ProteinModelPortal:Q5A331 GeneID:3642106 GeneID:3642160
KEGG:cal:CaO19.13790 KEGG:cal:CaO19.6432 Uniprot:Q5A331
Length = 766
Score = 270 (100.1 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 55/137 (40%), Positives = 80/137 (58%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TY+ VGGL QI+ +K IELP+ +P LF GI+ P+G+LL+GPPGTGKT+L R VA+
Sbjct: 227 TYDQVGGLSKQIELLKSTIELPLNNPTLFSDFGISPPRGILLHGPPGTGKTMLLRCVANS 286
Query: 437 -TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXX 495
TE + ++G +V K++GE +R++F A++ PSIIFM
Sbjct: 287 ITEAHVLTINGPSIVSKYLGETENAIRDIFNEAKKFQPSIIFMDEIDSIAPSRTSDDSGE 346
Query: 496 XXXVQRTMLELLNQLDG 512
R + +LL +DG
Sbjct: 347 TES--RVVAQLLTVMDG 361
Score = 263 (97.6 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 66/213 (30%), Positives = 108/213 (50%)
Query: 353 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 412
++ LP ++ P + ++P + +GG + +++ EV++LP++ + F LG++
Sbjct: 474 VYHALP-EIRPSAMREIFLEMPKVHWSDIGGQEELKRKLIEVVQLPLEASDSFKNLGVSS 532
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA 472
PKGVLLYGPPG KTL A+A+A + F+ V G E+ K++GE R +RE+F AR +
Sbjct: 533 PKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIREIFRKARAAS 592
Query: 473 PSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKN--IKGVC---TEAG 527
PSIIF + LLN++DG E K I G TE
Sbjct: 593 PSIIFFDEIDAIAGDRDGDSSTTAAS--NVLTSLLNEIDGVEELKGVVIVGATNKPTEID 650
Query: 528 MYALR----ERRVHVTQEDFEMAVAKVIMATNR 556
LR +R ++V D++ A +++ +R
Sbjct: 651 PALLRPGRLDRHIYVAPPDYD-ARLQILQKCSR 682
Score = 219 (82.2 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 51/108 (47%), Positives = 70/108 (64%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG--- 600
E+ ++ ATN+ +DPALLRPGR+DR I PP+ +ARL IL+ SRK NL G
Sbjct: 633 ELKGVVIVGATNKPTEIDPALLRPGRLDRHIYVAPPDYDARLQILQKCSRKFNLQSGDES 692
Query: 601 INLRKIAELMPGASGAEVKGVCTEAGMYALRERR--VHVTQEDFEMAV 646
++L+K+AEL G SGAEV +C EAG+ A+ E + VT + FE A+
Sbjct: 693 VDLQKLAELTDGCSGAEVTLLCQEAGLAAIMENKEATTVTNKHFEHAL 740
Score = 131 (51.2 bits), Expect = 3.8e-29, Sum P(3) = 3.8e-29
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL-----RIHSRKMNLTRGINLR 604
VI ATNR + +D AL RPGR D+++E P+ EAR +IL +++S K +T+ +
Sbjct: 370 VIGATNRPNSIDSALRRPGRFDQEVEIGIPDVEAREEILTKQFAKMNSEKCQITKE-EIA 428
Query: 605 KIAELMPGASGAEVKGVCTEAGMYAL-RERRVHVTQEDFEMAVAKV 649
IA G GA++ +C E+ M A+ R V + Q ++ V V
Sbjct: 429 SIASKTHGYVGADLTALCRESVMKAINRGLTVGIPQTAIKVTVDDV 474
Score = 50 (22.7 bits), Expect = 8.7e-21, Sum P(3) = 8.7e-21
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERR--VHVTQEDFEMAV 547
+ EL + G E T +C EAG+ A+ E + VT + FE A+
Sbjct: 698 LAELTDGCSGAEVTL----LCQEAGLAAIMENKEATTVTNKHFEHAL 740
Score = 45 (20.9 bits), Expect = 2.8e-38, Sum P(3) = 2.8e-38
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 7 PNIYLSQKLKLSEVIEPENLLEMLVYNGYLTAIPS 41
PN+ + K + I PE L M + NG L + S
Sbjct: 37 PNVPTNNKSVANVYINPEILSAMELNNGNLVLVSS 71
>TAIR|locus:2085064 [details] [associations]
symbol:CDC48 "cell division cycle 48" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
tube growth" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
Uniprot:P54609
Length = 809
Score = 303 (111.7 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 64/177 (36%), Positives = 98/177 (55%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
+A+ NE + H L N +P V +VP+ ++ +GGL+N +E++E ++ PV+HPE
Sbjct: 448 MAVTNEHF--HTALGNS-NPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPE 504
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI V G EL+ + GE VRE
Sbjct: 505 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRE 564
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX-XVQRTMLELLNQLDGFEATKNI 519
+F AR+ AP ++F R + +LL ++DG A K +
Sbjct: 565 IFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTV 621
Score = 292 (107.8 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
Identities = 57/149 (38%), Positives = 93/149 (62%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E++ D Y+ VGG+ Q+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++APSIIF+
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 318
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG ++ ++
Sbjct: 319 TNGEVE---RRIVSQLLTLMDGLKSRAHV 344
Score = 188 (71.2 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
Identities = 51/155 (32%), Positives = 83/155 (53%)
Query: 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM--ATNRIDILDPALL 565
++LD AT+ G + G A R +T+ D A V + ATNR DI+D ALL
Sbjct: 580 DELDSI-ATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALL 638
Query: 566 RPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 625
RPGR+D+ I P P+E++RL+I + RK + + +++ +A+ G SGA++ +C A
Sbjct: 639 RPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRA 698
Query: 626 GMYALRER-RVHVTQEDFEMAVAKVMQKDSEKNMS 659
YA+RE + +E + M++D +S
Sbjct: 699 CKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVS 733
Score = 187 (70.9 bits), Expect = 5.3e-38, Sum P(3) = 5.3e-38
Identities = 38/92 (41%), Positives = 60/92 (65%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+I+ P+E RL++LRIH++ M L ++L +I++
Sbjct: 346 VMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKD 405
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +CTEA + +RE+ + ED
Sbjct: 406 THGYVGADLAALCTEAALQCIREKMDVIDLED 437
Score = 51 (23.0 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI + +E+LQL
Sbjct: 27 PNRLVVDEAINDDNSVVSLHPATMEKLQL 55
Score = 45 (20.9 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQED 542
++ +CTEA + +RE+ + ED
Sbjct: 413 DLAALCTEAALQCIREKMDVIDLED 437
Score = 38 (18.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 257 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 257 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI + +E+LQL
Sbjct: 32 VDEAINDDNSVVSLHPATMEKLQL 55
>UNIPROTKB|F1P4V8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
Length = 810
Score = 291 (107.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 472 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 531
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 532 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 591
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 592 GNIGDGGGAADRVINQILTEMDGMSTKKNV 621
Score = 289 (106.8 bits), Expect = 7.0e-38, Sum P(4) = 7.0e-38
Identities = 56/150 (37%), Positives = 90/150 (60%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEETEKNAPAIIFIDELDAIASDDCF 315
Query: 491 XXXXXXXXVQRTML-ELLNQLDGFEATKNI 519
V+R ++ +LL +DG + ++
Sbjct: 316 PSPQTHGEVERRIVSQLLTLMDGLKQRAHV 345
Score = 181 (68.8 bits), Expect = 7.0e-38, Sum P(4) = 7.0e-38
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 623 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKM 682
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 683 TNGFSGADLTEICQRACKLAIRE 705
Score = 180 (68.4 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 347 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 406
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 407 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 446
Score = 54 (24.1 bits), Expect = 7.0e-38, Sum P(4) = 7.0e-38
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQAKMDELQL 51
Score = 44 (20.5 bits), Expect = 7.0e-38, Sum P(4) = 7.0e-38
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 402 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 446
Score = 40 (19.1 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQAKMDELQL 51
Score = 38 (18.4 bits), Expect = 4.6e-36, Sum P(4) = 4.6e-36
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNA 284
+ A+ + G + + E + + E E NLR+ + E NA
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKA-FEETEKNA 297
Score = 38 (18.4 bits), Expect = 6.6e-36, Sum P(3) = 6.6e-36
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNA 161
+ A+ + G + + E + + E E NLR+ + E NA
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKA-FEETEKNA 297
>UNIPROTKB|G3X757 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
process" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
Length = 806
Score = 291 (107.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 183 (69.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 53 (23.7 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>UNIPROTKB|Q3ZBT1 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
Length = 806
Score = 291 (107.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 183 (69.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 53 (23.7 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>UNIPROTKB|P55072 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISS] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
protein catabolic process" evidence=IMP;TAS] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=TAS]
[GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
apoptotic process" evidence=TAS] [GO:0045184 "establishment of
protein localization" evidence=TAS] [GO:0019985 "translesion
synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IMP] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
[GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
"positive regulation of protein catabolic process" evidence=IDA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
Length = 806
Score = 291 (107.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 183 (69.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 53 (23.7 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>MGI|MGI:99919 [details] [associations]
symbol:Vcp "valosin containing protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
"receptor binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
"cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IGI]
[GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISO] [GO:0031334 "positive regulation of protein complex
assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
evidence=ISO;IDA] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032436 "positive regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
binding" evidence=ISO] [GO:0045732 "positive regulation of protein
catabolic process" evidence=ISO] [GO:0051260 "protein
homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
Length = 806
Score = 291 (107.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 183 (69.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 53 (23.7 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>RGD|621595 [details] [associations]
symbol:Vcp "valosin-containing protein" species:10116 "Rattus
norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
[GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
[GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0018279 "protein N-linked glycosylation via asparagine"
evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
regulation of protein complex assembly" evidence=IEA;ISO]
[GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
"protein complex binding" evidence=IPI] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
"positive regulation of protein catabolic process" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
"aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
Uniprot:P46462
Length = 806
Score = 291 (107.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 183 (69.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 53 (23.7 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 2.8e-36, Sum P(4) = 2.8e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>UNIPROTKB|E2RLQ9 [details] [associations]
symbol:VCP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
[GO:0045732 "positive regulation of protein catabolic process"
evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0031334 "positive regulation of protein complex assembly"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
NextBio:20856352 Uniprot:E2RLQ9
Length = 822
Score = 291 (107.5 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 484 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 543
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 544 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 603
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 604 GNIGDGGGAADRVINQILTEMDGMSTKKNV 633
Score = 284 (105.0 bits), Expect = 2.4e-37, Sum P(4) = 2.4e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 212 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 271
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 272 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 319
Score = 183 (69.5 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 635 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 694
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 695 TNGFSGADLTEICQRACKLAIRE 717
Score = 180 (68.4 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 359 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 418
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 419 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 458
Score = 53 (23.7 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 39 PNRLIVDEAINEDNSVVSLSQPKMDELQL 67
Score = 44 (20.5 bits), Expect = 2.4e-37, Sum P(4) = 2.4e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 414 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 458
Score = 39 (18.8 bits), Expect = 3.2e-36, Sum P(4) = 3.2e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 44 VDEAINEDNSVVSLSQPKMDELQL 67
Score = 39 (18.8 bits), Expect = 3.2e-36, Sum P(4) = 3.2e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 270 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 312
Score = 39 (18.8 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 270 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 312
>UNIPROTKB|E1BTS8 [details] [associations]
symbol:LOC426240 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
GeneTree:ENSGT00700000104534 EMBL:AADN02060646 EMBL:AADN02060647
EMBL:AADN02060648 EMBL:AADN02060649 EMBL:AADN02060650
EMBL:AADN02060651 EMBL:AADN02060652 EMBL:AADN02060653
IPI:IPI00823321 Ensembl:ENSGALT00000039430 ArrayExpress:E1BTS8
Uniprot:E1BTS8
Length = 804
Score = 291 (107.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 466 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 525
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 526 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 585
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 586 GNIGDGGGAADRVINQILTEMDGMSTKKNV 615
Score = 255 (94.8 bits), Expect = 6.8e-34, Sum P(4) = 6.8e-34
Identities = 45/93 (48%), Positives = 66/93 (70%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
RAVA+ T F ++G E++ K GEG R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGEGESACRK 288
Score = 181 (68.8 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 617 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKM 676
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 677 TNGFSGADLTEICQRACKLAIRE 699
Score = 180 (68.4 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 341 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 400
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 401 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 440
Score = 54 (24.1 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQAKMDELQL 51
Score = 44 (20.5 bits), Expect = 6.8e-34, Sum P(4) = 6.8e-34
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 396 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 440
Score = 40 (19.1 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQAKMDELQL 51
>UNIPROTKB|Q6GL04 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
"chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
"translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
protein catabolic process" evidence=ISS] [GO:0032403 "protein
complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
InParanoid:Q6GL04 Uniprot:Q6GL04
Length = 805
Score = 291 (107.5 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 3.4e-37, Sum P(4) = 3.4e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 182 (69.1 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPVAKDVDLDFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 182 (69.1 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 39/101 (38%), Positives = 65/101 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L+ ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 52 (23.4 bits), Expect = 1.8e-37, Sum P(3) = 1.8e-37
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 232 KILPNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
K PN++ VDE+I K++ELQL
Sbjct: 20 KSRPNRLIVDESINEDNSVVSLSQAKMDELQL 51
Score = 44 (20.5 bits), Expect = 3.4e-37, Sum P(4) = 3.4e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 37 (18.1 bits), Expect = 5.5e-36, Sum P(4) = 5.5e-36
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDE+I K++ELQL
Sbjct: 28 VDESINEDNSVVSLSQAKMDELQL 51
>UNIPROTKB|P03974 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0018279 "protein
N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
"ER-associated protein catabolic process" evidence=ISS] [GO:0005829
"cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
"lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
Uniprot:P03974
Length = 806
Score = 288 (106.4 bits), Expect = 2.4e-37, Sum P(3) = 2.4e-37
Identities = 54/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++++++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 183 (69.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 679 TNGFSGADLTEICQRACKLAIRE 701
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 53 (23.7 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.1e-37, Sum P(4) = 2.1e-37
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 5.8e-36, Sum P(4) = 5.8e-36
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 6.3e-36, Sum P(4) = 6.3e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 7.0e-36, Sum P(3) = 7.0e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>UNIPROTKB|F1N9N5 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 TIGRFAMs:TIGR01241
OMA:LYRFVTT EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00683486 Ensembl:ENSGALT00000016639 ArrayExpress:F1N9N5
Uniprot:F1N9N5
Length = 635
Score = 255 (94.8 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 54/145 (37%), Positives = 81/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 148 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYEDLGAKIPKGAILTGPPGTGKTLLAKATA 206
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI V+GSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 207 GEANVPFITVNGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 266
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 267 GQSEQENTLNQLLVEMDGFNTTTNV 291
Score = 225 (84.3 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 51/118 (43%), Positives = 70/118 (59%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPAL+RPGR DR+I PP+ + R I ++H R +
Sbjct: 280 VEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLK 339
Query: 597 LTRGI---NL-RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + NL RK+A L PG SGA++ VC EA + A R + Q+ FE A+ +V+
Sbjct: 340 LDTVLDKDNLARKLASLTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQAIERVI 397
Score = 68 (29.0 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF +I VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 352 KLASLTPGFSGA-DIANVCNEAALIAARHLSDAINQKHFEQAIERVIGGLEKKTQVLQP 409
Score = 40 (19.1 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 514 EATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP 562
E +++ + + + L E++ V + + +V+ ++ +D+L P
Sbjct: 543 EEVRSLINIAYDRTLSLLTEKKAEVEKVALRLLEKEVLDKSDMVDLLGP 591
>UNIPROTKB|H9KYT1 [details] [associations]
symbol:LOC430766 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
Uniprot:H9KYT1
Length = 538
Score = 291 (107.5 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 200 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 259
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 260 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 319
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 320 GNIGDGGGAADRVINQILTEMDGMSTKKNV 349
Score = 181 (68.8 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++
Sbjct: 351 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKM 410
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 411 TNGFSGADLTEICQRACKLAIRE 433
Score = 176 (67.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 38/101 (37%), Positives = 63/101 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++
Sbjct: 75 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVGNE 134
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 135 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 174
Score = 70 (29.7 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 445 SGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
SG E++ K GE +R+ F A ++AP+IIF+
Sbjct: 2 SGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 35
Score = 42 (19.8 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ +C+EA + A+R++ + ED E A+V+
Sbjct: 142 DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 174
>UNIPROTKB|P23787 [details] [associations]
symbol:vcp "Transitional endoplasmic reticulum ATPase"
species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=ISS] [GO:0016567
"protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
[GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
"site of double-strand break" evidence=ISS] [GO:0035101 "FACT
complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
Length = 805
Score = 290 (107.1 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSIKKNV 617
Score = 284 (105.0 bits), Expect = 9.1e-37, Sum P(3) = 9.1e-37
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 182 (69.1 bits), Expect = 9.1e-37, Sum P(3) = 9.1e-37
Identities = 39/101 (38%), Positives = 65/101 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L+ ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 180 (68.4 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 39/98 (39%), Positives = 66/98 (67%)
Query: 538 VTQEDFEMAVAK---VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRK 594
+T+ D M++ K +I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK
Sbjct: 605 LTEMD-GMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRK 663
Query: 595 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 632
+ + +++ +A++ G SGA++ +C A A+RE
Sbjct: 664 SPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRE 701
Score = 53 (23.7 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 232 KILPNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
K PN++ VDE+I K++ELQL
Sbjct: 20 KSRPNRLIVDESINEDNSMVSLSQAKMDELQL 51
Score = 44 (20.5 bits), Expect = 1.8e-22, Sum P(3) = 1.8e-22
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 8.3e-36, Sum P(3) = 8.3e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 9.2e-36, Sum P(4) = 9.2e-36
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 38 (18.4 bits), Expect = 9.2e-36, Sum P(4) = 9.2e-36
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDE+I K++ELQL
Sbjct: 28 VDESINEDNSMVSLSQAKMDELQL 51
>ZFIN|ZDB-GENE-060312-22 [details] [associations]
symbol:zgc:136908 "zgc:136908" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
Length = 805
Score = 287 (106.1 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 52/108 (48%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + D Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 198 ESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLVA 257
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 258 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 305
Score = 274 (101.5 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 52/150 (34%), Positives = 84/150 (56%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP +E +GGLD +E++E+++ PV++P+ F G+ +GVL YGPPG GKTLL
Sbjct: 470 VVEVPHVNWEDIGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLL 529
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + F+ + G EL+ + GE VR++F AR+ AP I+F
Sbjct: 530 AKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKARG 589
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 590 GGAGDAGGAADRVINQILTEMDGMTNKKNV 619
Score = 173 (66.0 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+ +R ILR + RK + + ++L ++++
Sbjct: 621 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDMPSRTAILRANLRKSPVAKDVDLMYLSKI 680
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA++ +C A A+RE
Sbjct: 681 TEGFSGADLTEICQRACKLAIRE 703
Score = 171 (65.3 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 35/92 (38%), Positives = 59/92 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +D AL R GR DR+I+ P+ RL+IL+IH++ M L+ ++L +I+
Sbjct: 345 VMAATNRPNSVDAALRRFGRFDREIDIGIPDSTGRLEILQIHTKNMKLSEDVDLEQISAE 404
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +C+EA + A+R++ + ED
Sbjct: 405 THGHVGADLAALCSEAALQAIRKKMTLIDLED 436
Score = 58 (25.5 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 232 KILPNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
KI PN++ VDEA K+EELQL
Sbjct: 22 KIRPNRLIVDEATNEDNSIVCLSQVKMEELQL 53
Score = 44 (20.5 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQED 542
++ +C+EA + A+R++ + ED
Sbjct: 412 DLAALCSEAALQAIRKKMTLIDLED 436
Score = 40 (19.1 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
V A+ + G + + E + + E E NLR+ +A++N
Sbjct: 256 VARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 298
Score = 40 (19.1 bits), Expect = 3.9e-33, Sum P(4) = 3.9e-33
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
V A+ + G + + E + + E E NLR+ +A++N
Sbjct: 256 VARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 298
Score = 37 (18.1 bits), Expect = 4.3e-35, Sum P(4) = 4.3e-35
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEA K+EELQL
Sbjct: 30 VDEATNEDNSIVCLSQVKMEELQL 53
>TIGR_CMR|BA_0064 [details] [associations]
symbol:BA_0064 "cell division protein FtsH" species:198094
"Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
Uniprot:Q81VX5
Length = 633
Score = 261 (96.9 bits), Expect = 3.2e-37, Sum P(3) = 3.2e-37
Identities = 58/139 (41%), Positives = 81/139 (58%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
V G D + +E+ EV+E +K P F +G PKGVLL GPPGTGKTLLARAVA
Sbjct: 164 VAGADEEKQELVEVVEF-LKDPRKFAEVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVP 222
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQ 500
F +SGS+ V+ F+G G+ VR+LF A+++AP IIF+ +
Sbjct: 223 FFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDERE 282
Query: 501 RTMLELLNQLDGFEATKNI 519
+T+ +LL ++DGF A + I
Sbjct: 283 QTLNQLLVEMDGFGANEGI 301
Score = 219 (82.2 bits), Expect = 3.2e-37, Sum P(3) = 3.2e-37
Identities = 46/113 (40%), Positives = 68/113 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DILDPALLRPGR DR+I P+ R +L++H+R L INLR IA
Sbjct: 303 IIAATNRPDILDPALLRPGRFDRQITVDRPDVNGREAVLKVHARNKPLDENINLRAIATR 362
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG SGA+++ + EA + A R+ + + D + A +V+ ++K+ I +
Sbjct: 363 TPGFSGADLENLLNEAALVAARQDKKKIDMSDIDEATDRVIAGPAKKSRVISE 415
Score = 40 (19.1 bits), Expect = 3.2e-37, Sum P(3) = 3.2e-37
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 88 ENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSE 125
E K + N+++GE V A E E Q+ +++ + +E
Sbjct: 62 EVKGQFNNSSQGEQFVTYAPNTE-ELQKKINDKAQGAE 98
>ZFIN|ZDB-GENE-060929-204 [details] [associations]
symbol:spata5l1 "spermatogenesis associated 5-like
1" species:7955 "Danio rerio" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-060929-204 GO:GO:0005524
GeneTree:ENSGT00700000104502 GO:GO:0017111 CTD:79029 EMBL:CU929075
EMBL:CU595864 IPI:IPI00804177 RefSeq:NP_001070056.2
UniGene:Dr.80583 Ensembl:ENSDART00000101660
Ensembl:ENSDART00000129459 GeneID:767648 KEGG:dre:767648
NextBio:20918042 Uniprot:F1Q8W3
Length = 748
Score = 420 (152.9 bits), Expect = 3.8e-37, P = 3.8e-37
Identities = 91/260 (35%), Positives = 147/260 (56%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
+E +GGL++ ++K+ IE P++ PE F LG+++P+GVLLYGPPG KT L +A A +
Sbjct: 451 WEQIGGLEDVKLKLKQSIEWPMRFPEAFVRLGVSRPRGVLLYGPPGCAKTTLVKAAASSS 510
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
C+F +SG+EL ++G+ + + +LF AR APSI+F+
Sbjct: 511 HCSFFSLSGAELFSPYVGDSEKTLAQLFAQARACAPSIVFLDEVDSMVGSREDGSSSSHS 570
Query: 498 XVQRTMLELLNQLDGFEA-TKNIKGVCTEAGMYALRERR-VHVTQEDFEMAVAK---VIM 552
+ + LL +LDG T + C + + ++ V + Q + + K ++
Sbjct: 571 VQSQVLSVLLTELDGVGVRTLERRSTCRKIALLEGGDQEDVRLHQMELQEVCNKDVLIVA 630
Query: 553 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612
ATNR + LD ALLRPGR+D+ I PPP+ +ARL +LRI ++ + L + + L +A
Sbjct: 631 ATNRPEALDSALLRPGRLDQIIYVPPPDLQARLAVLRICTKSVPLHQDVCLEDLAAQTEL 690
Query: 613 ASGAEVKGVCTEAGMYALRE 632
SGA+++ +C EA + ALRE
Sbjct: 691 FSGADLENLCKEAALLALRE 710
Score = 182 (69.1 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 36/92 (39%), Positives = 55/92 (59%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GG+++ +KE+I P+++P LG++ P+G+LL GPPG GKTLL R VA T
Sbjct: 189 LGGMEDVFASLKEMITFPLRYPGSLRQLGLSCPRGLLLIGPPGVGKTLLVRCVAKDIGAT 248
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHA 472
+ V+G E+ GE +R +F AR+ A
Sbjct: 249 LVTVNGPEVTGSRPGESEENLRRVFEQARDAA 280
Score = 148 (57.2 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATN+ D LDPAL RPGR DR++ P+ R IL+ R+M L+ ++L +AE+
Sbjct: 329 IIGATNQPDSLDPALRRPGRFDREVIIGVPSLLQRRSILKCVCREMPLSPDVDLNTLAEM 388
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQ 639
G GA++ + EA + A+R ++ ++
Sbjct: 389 TCGYVGADLSALSREAALQAMRHSQMGASE 418
>UNIPROTKB|Q9Y4W6 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9606 "Homo
sapiens" [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0007528
"neuromuscular junction development" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0021675 "nerve
development" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051082 "unfolded protein binding" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0008219 DrugBank:DB00171 GO:GO:0007528 GO:GO:0051082
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 eggNOG:COG0465
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 GO:GO:0021675 GO:GO:0060013 EMBL:Y18314 EMBL:BC065016
IPI:IPI00001091 RefSeq:NP_006787.2 UniGene:Hs.726355 PDB:2LNA
PDBsum:2LNA ProteinModelPortal:Q9Y4W6 SMR:Q9Y4W6 IntAct:Q9Y4W6
MINT:MINT-1161944 STRING:Q9Y4W6 MEROPS:M41.007 PhosphoSite:Q9Y4W6
DMDM:126302516 PaxDb:Q9Y4W6 PeptideAtlas:Q9Y4W6 PRIDE:Q9Y4W6
Ensembl:ENST00000269143 GeneID:10939 KEGG:hsa:10939 UCSC:uc002kqz.2
GeneCards:GC18M012328 H-InvDB:HIX0027367 HGNC:HGNC:315
HPA:HPA004479 HPA:HPA004480 MIM:604581 MIM:610246 MIM:614487
neXtProt:NX_Q9Y4W6 Orphanet:101109 PharmGKB:PA24612
InParanoid:Q9Y4W6 PhylomeDB:Q9Y4W6 GenomeRNAi:10939 NextBio:41551
ArrayExpress:Q9Y4W6 Bgee:Q9Y4W6 CleanEx:HS_AFG3L2
Genevestigator:Q9Y4W6 GermOnline:ENSG00000141385 Uniprot:Q9Y4W6
Length = 797
Score = 256 (95.2 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 55/145 (37%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 304 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 362
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI VSGSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 363 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 422
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 423 GQSEQENTLNQLLVEMDGFNTTTNV 447
Score = 225 (84.3 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
Identities = 51/118 (43%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPALLRPGR DR+I PP+ + R I ++H R +
Sbjct: 436 VEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 495
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + RK+A L PG SGA+V VC EA + A R + Q+ FE A+ +V+
Sbjct: 496 LDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVI 553
Score = 68 (29.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF ++ VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 508 KLASLTPGFSGA-DVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQP 565
>UNIPROTKB|E2QYF3 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060013 "righting reflex" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0042407 "cristae
formation" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 GO:GO:0005743
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
EMBL:AAEX03005521 RefSeq:XP_547682.2 ProteinModelPortal:E2QYF3
Ensembl:ENSCAFT00000029872 GeneID:490560 KEGG:cfa:490560
Uniprot:E2QYF3
Length = 806
Score = 256 (95.2 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 55/145 (37%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 305 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 363
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI VSGSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 364 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 423
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 424 GQSEQENTLNQLLVEMDGFNTTTNV 448
Score = 225 (84.3 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 50/118 (42%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPAL+RPGR DR+I PP+ + R I ++H R +
Sbjct: 437 VEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 496
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + RK+A L PG SGA+V VC EA + A R + Q+ FE A+ +V+
Sbjct: 497 LDSALEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVI 554
Score = 68 (29.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF ++ VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 509 KLASLTPGFSGA-DVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQP 566
>CGD|CAL0000732 [details] [associations]
symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 299 (110.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 60/151 (39%), Positives = 86/151 (56%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
+VE V + T++ +GGLDN E+KE +E PV HP+ + G+A KGVL +GPPGTGKTL
Sbjct: 479 VVENV-NVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTL 537
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LA+AVA FI V G EL+ + GE +R++F AR AP+++F+
Sbjct: 538 LAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKAR 597
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + +LL ++DG A KN+
Sbjct: 598 GGSHGDAGGASDRVVNQLLTEMDGMNAKKNV 628
Score = 290 (107.1 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 55/142 (38%), Positives = 88/142 (61%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ +GG Q+ +I+E++ELP++HP+LF ++GI PKG+L+YGPPGTGKT++ARAVA+ T
Sbjct: 214 YDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANET 273
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A +++PSIIF+
Sbjct: 274 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDKTNGEVE- 332
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG +A N+
Sbjct: 333 --RRVVSQLLTLMDGMKARSNV 352
Score = 188 (71.2 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +DPAL R GR DR+++ P+ E RL+ILRIH++ M L ++L IA
Sbjct: 354 VIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASE 413
Query: 610 MPGASGAEVKGVCTEAGMYALRER 633
G GA++ +C+EA M +RE+
Sbjct: 414 THGFVGADIASLCSEAAMQQIREK 437
Score = 176 (67.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D +DPALLRPGR+D+ I P P+E ARL IL+ R L G++L +IA++
Sbjct: 630 VIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKI 689
Query: 610 MPGASGAEVKGVCTEAGMYALR-------------ERRVHVTQEDFEMAVAKVMQKD 653
G SGA++ + + +A++ E + V ED +M V +V ++D
Sbjct: 690 THGFSGADLSYIVQRSAKFAIKDSIEAQVKINKIKEEKEKVKTEDVDMKVDEVEEED 746
Score = 45 (20.9 bits), Expect = 5.9e-36, Sum P(3) = 5.9e-36
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 506 LLNQLDGFEATKNIKGVCTEAGMYALRERR--VHVTQEDFEMAVAKVIMAT 554
+ ++ GF +I +C+EA M +RE+ + + +E + V + T
Sbjct: 410 IASETHGFVGA-DIASLCSEAAMQQIREKMDLIDLEEETIDTEVLNSLGVT 459
>UNIPROTKB|Q59WG3 [details] [associations]
symbol:CDC48 "Putative uncharacterized protein CDC48"
species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
Uniprot:Q59WG3
Length = 826
Score = 299 (110.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 60/151 (39%), Positives = 86/151 (56%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
+VE V + T++ +GGLDN E+KE +E PV HP+ + G+A KGVL +GPPGTGKTL
Sbjct: 479 VVENV-NVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTL 537
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LA+AVA FI V G EL+ + GE +R++F AR AP+++F+
Sbjct: 538 LAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKAR 597
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + +LL ++DG A KN+
Sbjct: 598 GGSHGDAGGASDRVVNQLLTEMDGMNAKKNV 628
Score = 290 (107.1 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 55/142 (38%), Positives = 88/142 (61%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ +GG Q+ +I+E++ELP++HP+LF ++GI PKG+L+YGPPGTGKT++ARAVA+ T
Sbjct: 214 YDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVANET 273
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A +++PSIIF+
Sbjct: 274 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKRDKTNGEVE- 332
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG +A N+
Sbjct: 333 --RRVVSQLLTLMDGMKARSNV 352
Score = 188 (71.2 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +DPAL R GR DR+++ P+ E RL+ILRIH++ M L ++L IA
Sbjct: 354 VIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGRLEILRIHTKNMKLADDVDLEAIASE 413
Query: 610 MPGASGAEVKGVCTEAGMYALRER 633
G GA++ +C+EA M +RE+
Sbjct: 414 THGFVGADIASLCSEAAMQQIREK 437
Score = 176 (67.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D +DPALLRPGR+D+ I P P+E ARL IL+ R L G++L +IA++
Sbjct: 630 VIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPARLSILQAQLRNTPLEPGLDLNEIAKI 689
Query: 610 MPGASGAEVKGVCTEAGMYALR-------------ERRVHVTQEDFEMAVAKVMQKD 653
G SGA++ + + +A++ E + V ED +M V +V ++D
Sbjct: 690 THGFSGADLSYIVQRSAKFAIKDSIEAQVKINKIKEEKEKVKTEDVDMKVDEVEEED 746
Score = 45 (20.9 bits), Expect = 5.9e-36, Sum P(3) = 5.9e-36
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 506 LLNQLDGFEATKNIKGVCTEAGMYALRERR--VHVTQEDFEMAVAKVIMAT 554
+ ++ GF +I +C+EA M +RE+ + + +E + V + T
Sbjct: 410 IASETHGFVGA-DIASLCSEAAMQQIREKMDLIDLEEETIDTEVLNSLGVT 459
>UNIPROTKB|E1BZ74 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0016265 "death" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0042407 "cristae formation" evidence=IEA]
[GO:0042552 "myelination" evidence=IEA] [GO:0060013 "righting
reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0008270 GO:GO:0006508
GO:GO:0040014 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 GO:GO:0016265
GO:GO:0060013 EMBL:AADN02058877 EMBL:AADN02058878 EMBL:AADN02058879
IPI:IPI00603273 Ensembl:ENSGALT00000022474 ArrayExpress:E1BZ74
Uniprot:E1BZ74
Length = 805
Score = 255 (94.8 bits), Expect = 6.3e-37, Sum P(2) = 6.3e-37
Identities = 54/145 (37%), Positives = 81/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 304 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYEDLGAKIPKGAILTGPPGTGKTLLAKATA 362
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI V+GSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 363 GEANVPFITVNGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 422
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 423 GQSEQENTLNQLLVEMDGFNTTTNV 447
Score = 225 (84.3 bits), Expect = 6.3e-37, Sum P(2) = 6.3e-37
Identities = 51/118 (43%), Positives = 70/118 (59%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPAL+RPGR DR+I PP+ + R I ++H R +
Sbjct: 436 VEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLK 495
Query: 597 LTRGI---NL-RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + NL RK+A L PG SGA++ VC EA + A R + Q+ FE A+ +V+
Sbjct: 496 LDTVLDKDNLARKLASLTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQAIERVI 553
Score = 68 (29.0 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF +I VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 508 KLASLTPGFSGA-DIANVCNEAALIAARHLSDAINQKHFEQAIERVIGGLEKKTQVLQP 565
Score = 40 (19.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 514 EATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP 562
E +++ + + + L E++ V + + +V+ ++ +D+L P
Sbjct: 699 EEVRSLINIAYDRTLSLLTEKKAEVEKVALRLLEKEVLDKSDMVDLLGP 747
>UNIPROTKB|J3QRR3 [details] [associations]
symbol:PSMC5 "26S protease regulatory subunit 8"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC015651
ChiTaRS:PSMC5 HGNC:HGNC:9552 Ensembl:ENST00000584880 Uniprot:J3QRR3
Length = 127
Score = 399 (145.5 bits), Expect = 6.9e-37, P = 6.9e-37
Identities = 76/80 (95%), Positives = 79/80 (98%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
TYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVLLYGPPGTGKTLLARAVAHH
Sbjct: 2 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 61
Query: 437 TECTFIRVSGSELVQKFIGE 456
T+CTFIRVSGSELVQKFIGE
Sbjct: 62 TDCTFIRVSGSELVQKFIGE 81
>TAIR|locus:2009235 [details] [associations]
symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
"metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
Genevestigator:Q8W585 Uniprot:Q8W585
Length = 685
Score = 280 (103.6 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
Identities = 58/143 (40%), Positives = 84/143 (58%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T++ V G+D ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
F +SGSE V+ F+G G+ VR+LF A+E+AP I+F+
Sbjct: 277 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 336
Query: 497 XXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGFE +
Sbjct: 337 DEREQTLNQLLTEMDGFEGNTGV 359
Score = 195 (73.7 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
Identities = 38/101 (37%), Positives = 62/101 (61%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR DILD ALLRPGR DR++ P+ + R DIL++HS G++L IA
Sbjct: 361 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMR 420
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
PG SGA++ + EA + A R + ++ ++ + ++ +++
Sbjct: 421 TPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIV 461
>MGI|MGI:1916847 [details] [associations]
symbol:Afg3l2 "AFG3(ATPase family gene 3)-like 2 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0007005 "mitochondrion organization" evidence=IGI] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0008053 "mitochondrial fusion"
evidence=IGI] [GO:0008233 "peptidase activity" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016265 "death" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0021675 "nerve development" evidence=IMP]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IGI] [GO:0040014
"regulation of multicellular organism growth" evidence=IMP]
[GO:0042407 "cristae formation" evidence=IGI] [GO:0042552
"myelination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048747 "muscle fiber development" evidence=IMP]
[GO:0060013 "righting reflex" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1916847
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0046872
GO:GO:0007528 GO:GO:0008270 GO:GO:0006508 GO:GO:0040014
GO:GO:0004222 GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
CTD:10939 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
MEROPS:M41.007 EMBL:BC036999 EMBL:BC043056 IPI:IPI00170357
RefSeq:NP_081406.1 UniGene:Mm.426052 ProteinModelPortal:Q8JZQ2
SMR:Q8JZQ2 IntAct:Q8JZQ2 STRING:Q8JZQ2 PhosphoSite:Q8JZQ2
PaxDb:Q8JZQ2 PRIDE:Q8JZQ2 Ensembl:ENSMUST00000025408 GeneID:69597
KEGG:mmu:69597 UCSC:uc008fmf.1 InParanoid:Q8JZQ2 NextBio:329880
Bgee:Q8JZQ2 CleanEx:MM_AFG3L2 Genevestigator:Q8JZQ2
GermOnline:ENSMUSG00000024527 Uniprot:Q8JZQ2
Length = 802
Score = 256 (95.2 bits), Expect = 7.7e-37, Sum P(2) = 7.7e-37
Identities = 55/145 (37%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 303 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 361
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI VSGSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 362 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 421
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 422 GQSEQENTLNQLLVEMDGFNTTTNV 446
Score = 223 (83.6 bits), Expect = 7.7e-37, Sum P(2) = 7.7e-37
Identities = 50/118 (42%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPALLRPGR DR+I PP+ + R I ++H R +
Sbjct: 435 VEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 494
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + RK+A L PG SGA+V VC EA + A R + ++ FE A+ +V+
Sbjct: 495 LDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERVI 552
Score = 64 (27.6 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF ++ VC EA + A R + ++ FE A+ +VI + +L P
Sbjct: 507 KLASLTPGFSGA-DVANVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQVLQP 564
>UNIPROTKB|F1LN92 [details] [associations]
symbol:Afg3l2 "Protein Afg3l2" species:10116 "Rattus
norvegicus" [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IEA] [GO:0008053 "mitochondrial fusion" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016265 "death" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0021675 "nerve development" evidence=IEA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0040014 "regulation of multicellular
organism growth" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0060013
"righting reflex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1305259
GO:GO:0016021 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163
GeneTree:ENSGT00530000063070 KO:K08956 GO:GO:0017111 GO:GO:0042407
GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241 CTD:10939
OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
IPI:IPI00192903 RefSeq:NP_001128336.1 UniGene:Rn.8386
ProteinModelPortal:F1LN92 PRIDE:F1LN92 Ensembl:ENSRNOT00000024632
GeneID:307350 KEGG:rno:307350 NextBio:657254 ArrayExpress:F1LN92
Uniprot:F1LN92
Length = 802
Score = 256 (95.2 bits), Expect = 7.7e-37, Sum P(2) = 7.7e-37
Identities = 55/145 (37%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 303 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 361
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI VSGSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 362 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 421
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 422 GQSEQENTLNQLLVEMDGFNTTTNV 446
Score = 223 (83.6 bits), Expect = 7.7e-37, Sum P(2) = 7.7e-37
Identities = 50/118 (42%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPALLRPGR DR+I PP+ + R I ++H R +
Sbjct: 435 VEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 494
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + RK+A L PG SGA+V VC EA + A R + ++ FE A+ +V+
Sbjct: 495 LDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERVI 552
Score = 64 (27.6 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF ++ VC EA + A R + ++ FE A+ +VI + +L P
Sbjct: 507 KLASLTPGFSGA-DVANVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQVLQP 564
>RGD|1309722 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0007005 "mitochondrion
organization" evidence=ISO] [GO:0008053 "mitochondrial fusion"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=ISO] [GO:0042407
"cristae formation" evidence=ISO] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 RGD:1309722
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0008270
GO:GO:0006508 GO:GO:0004222 GO:GO:0030163 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
IPI:IPI00365343 Ensembl:ENSRNOT00000065957 UCSC:RGD:1309722
ArrayExpress:F1LS61 Uniprot:F1LS61
Length = 761
Score = 259 (96.2 bits), Expect = 7.8e-37, Sum P(2) = 7.8e-37
Identities = 54/145 (37%), Positives = 81/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D + V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 268 DVRFADVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATA 326
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
+ FI V+GSE ++ F+G G VR++F MAR+HAP I+F+
Sbjct: 327 GEAKVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLG 386
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ ++L ++DGF +T N+
Sbjct: 387 GQSEQENTLNQMLVEMDGFNSTTNV 411
Score = 219 (82.2 bits), Expect = 7.8e-37, Sum P(2) = 7.8e-37
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM- 595
V + F V++A TNR DILDPAL RPGR DR+I PP+ + R I ++H R +
Sbjct: 400 VEMDGFNSTTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLK 459
Query: 596 ---NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
+LTR RK+A L PG +GA++ VC EA + A R V + FE A+ +V+
Sbjct: 460 LDESLTRDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERVI 517
Score = 66 (28.3 bits), Expect = 8.0e-21, Sum P(2) = 8.0e-21
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDPA 563
GF +I VC EA + A R V + FE A+ +VI + +L P+
Sbjct: 479 GFTGA-DISNVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPS 530
>UNIPROTKB|Q2KJI7 [details] [associations]
symbol:AFG3L2 "AFG3-like protein 2" species:9913 "Bos
taurus" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 GO:GO:0005743 GO:GO:0046872 GO:GO:0007528
GO:GO:0008270 GO:GO:0006508 GO:GO:0040014 GO:GO:0004222
GO:GO:0042552 GO:GO:0007409 GO:GO:0030163 MEROPS:M41.016
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 OrthoDB:EOG4SBDXC GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:BC105322 IPI:IPI00686580 RefSeq:NP_001039676.1 UniGene:Bt.1657
HSSP:Q9WZ49 ProteinModelPortal:Q2KJI7 SMR:Q2KJI7 STRING:Q2KJI7
PRIDE:Q2KJI7 Ensembl:ENSBTAT00000031029 GeneID:515757
KEGG:bta:515757 CTD:10939 InParanoid:Q2KJI7 OMA:LYRFVTT
NextBio:20871990 GO:GO:0016265 GO:GO:0021675 GO:GO:0060013
Uniprot:Q2KJI7
Length = 805
Score = 256 (95.2 bits), Expect = 7.8e-37, Sum P(2) = 7.8e-37
Identities = 55/145 (37%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 305 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 363
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI VSGSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 364 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 423
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 424 GQSEQENTLNQLLVEMDGFNTTTNV 448
Score = 223 (83.6 bits), Expect = 7.8e-37, Sum P(2) = 7.8e-37
Identities = 50/118 (42%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPAL+RPGR DR+I PP+ + R I ++H R +
Sbjct: 437 VEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 496
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + RK+A L PG SGA+V VC EA + A R + Q+ FE A+ +V+
Sbjct: 497 LDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVI 554
Score = 68 (29.0 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF ++ VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 509 KLASLTPGFSGA-DVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQP 566
>UNIPROTKB|P37476 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0008233 "peptidase activity" evidence=IDA] [GO:0030163 "protein
catabolic process" evidence=IDA] [GO:0030428 "cell septum"
evidence=IDA] [GO:0043934 "sporulation" evidence=IMP]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0006950 GO:GO:0051301 GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0007049
GO:GO:0030163 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0043934
eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0008233
GO:GO:0030428 EMBL:D26185 HOGENOM:HOG000217276 KO:K03798 PIR:E69627
RefSeq:NP_387950.1 ProteinModelPortal:P37476 SMR:P37476
IntAct:P37476 MEROPS:M41.009 EnsemblBacteria:EBBACT00000001428
GeneID:938094 KEGG:bsu:BSU00690 PATRIC:18971613 GenoList:BSU00690
OMA:ENMSYST ProtClustDB:CLSK886567 BioCyc:BSUB:BSU00690-MONOMER
Uniprot:P37476
Length = 637
Score = 257 (95.5 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 56/142 (39%), Positives = 82/142 (57%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
++ V G D + +E+ EV+E +K P F LG PKGVLL GPPGTGKTLLA+A A
Sbjct: 160 FKDVAGADEEKQELVEVVEF-LKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKACAGEA 218
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F +SGS+ V+ F+G G+ VR+LF A+++AP +IF+
Sbjct: 219 GVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGGHD 278
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF A + I
Sbjct: 279 EREQTLNQLLVEMDGFSANEGI 300
Score = 217 (81.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 45/113 (39%), Positives = 68/113 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DILDPALLRPGR DR+I P+ R +L++H+R L +NL+ IA
Sbjct: 302 IIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMR 361
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG SGA+++ + EA + A R+ + + D + A +V+ ++K+ I K
Sbjct: 362 TPGFSGADLENLLNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISK 414
>UNIPROTKB|F1SIH8 [details] [associations]
symbol:VCP "Transitional endoplasmic reticulum ATPase"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
Uniprot:F1SIH8
Length = 808
Score = 291 (107.5 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 55/150 (36%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG KN+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNV 617
Score = 284 (105.0 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E + + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFI 303
Score = 180 (68.4 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A
Sbjct: 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
G GA++ +C+EA + A+R++ + ED E A+VM
Sbjct: 403 THGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 173 (66.0 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 36/85 (42%), Positives = 58/85 (68%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRG--INLRKIA 607
+I ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A
Sbjct: 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKAGDVDLEFLA 678
Query: 608 ELMPGASGAEVKGVCTEAGMYALRE 632
++ G SGA++ +C A A+RE
Sbjct: 679 KMTNGFSGADLTEICQRACKLAIRE 703
Score = 53 (23.7 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ VDEAI K++ELQL
Sbjct: 23 PNRLIVDEAINEDNSVVSLSQPKMDELQL 51
Score = 44 (20.5 bits), Expect = 2.3e-36, Sum P(4) = 2.3e-36
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
++ N+ G ++ +C+EA + A+R++ + ED E A+V+
Sbjct: 398 QVANETHGHVGA-DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVM 442
Score = 39 (18.8 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQL 140
VDEAI K++ELQL
Sbjct: 28 VDEAINEDNSVVSLSQPKMDELQL 51
Score = 39 (18.8 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
Score = 39 (18.8 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296
>DICTYBASE|DDB_G0278435 [details] [associations]
symbol:DDB_G0278435 "AAA ATPase domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
dictyBase:DDB_G0278435 GO:GO:0005524 EMBL:AAFI02000023
GO:GO:0016887 eggNOG:COG0464 KO:K14575 InterPro:IPR009010
SUPFAM:SSF50692 RefSeq:XP_642364.1 ProteinModelPortal:Q54Y38
EnsemblProtists:DDB0237527 GeneID:8621569 KEGG:ddi:DDB_G0278435
InParanoid:Q54Y38 OMA:TSICREA Uniprot:Q54Y38
Length = 886
Score = 292 (107.8 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 60/161 (37%), Positives = 95/161 (59%)
Query: 359 NKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLL 418
N+V P +V ++P + +GG ++ +++KE IE P+K+P+ F +GI PKG+LL
Sbjct: 602 NQVKPSSMREVVVEIPKVFWGDIGGQEHIKQKLKEAIEWPLKYPQSFIRMGIKPPKGILL 661
Query: 419 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
YGPPG KTLLA+A+A + FI V G EL+ K++GE R VR++F AR+++PSI+F
Sbjct: 662 YGPPGCSKTLLAKALATESGLNFIAVKGPELLSKWVGESERAVRDIFKKARQNSPSILFF 721
Query: 479 XXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
V+R + +LL ++DG + N+
Sbjct: 722 DEIDGLAISRSGEGSGA---VERVVSQLLTEMDGIQPLTNV 759
Score = 248 (92.4 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 45/101 (44%), Positives = 71/101 (70%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
++ +GGLD Q+K+I+E+I+L +L + G+ PKG+LLYGPPGTGKTLLAR VA T
Sbjct: 311 FQSIGGLDLQVKQIRELIDLSFYKLDLLKSFGVKPPKGILLYGPPGTGKTLLARIVATQT 370
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
T ++G++++ KF G + ++++F A + +PSIIF+
Sbjct: 371 NATLFTINGADILDKFYGMTEKTLQKIFKDAAQKSPSIIFI 411
Score = 184 (69.8 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+D A+LR GRIDR + PP+ +AR +I IH +K+ + I++ +++ L
Sbjct: 761 IIGATNRPDIIDKAILRAGRIDRILYISPPDLDARKEIFNIHLKKVPHSSDIDINQLSIL 820
Query: 610 MPGASGAEVKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
G SGAEV +C EA + A++E + F A+ V + +++ + K
Sbjct: 821 TDGYSGAEVTSICREASIAAMKEDINAKEINMSHFISAIGNVKKGITQEMLDFYK 875
Score = 135 (52.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 37/108 (34%), Positives = 54/108 (50%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKM-NLTRGINLRKIAE 608
VI TNR D +D AL RPGR D +IE PN++ R IL I K+ N + IA
Sbjct: 471 VIGCTNRPDSIDSALRRPGRFDNEIEISIPNQQGREQILNIFLSKIPNQLTSQEIAMIAS 530
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 656
G GA+++ +C EA + R + Q+ F+ + +K E+
Sbjct: 531 KTHGFVGADIESLCKEASLKCFN-RIKNENQKLFQSINIEKEEKGKEE 577
Score = 44 (20.5 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 507 LNQL----DGFEATKNIKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKV 550
+NQL DG+ + + +C EA + A++E + F A+ V
Sbjct: 814 INQLSILTDGYSGAE-VTSICREASIAAMKEDINAKEINMSHFISAIGNV 862
>UNIPROTKB|I3LLQ8 [details] [associations]
symbol:AFG3L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060013 "righting reflex" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042407 "cristae formation"
evidence=IEA] [GO:0040014 "regulation of multicellular organism
growth" evidence=IEA] [GO:0034982 "mitochondrial protein
processing" evidence=IEA] [GO:0021675 "nerve development"
evidence=IEA] [GO:0016265 "death" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0007528 "neuromuscular
junction development" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005743 GO:GO:0007528
GO:GO:0006508 GO:GO:0040014 GO:GO:0004222 GO:GO:0042552
GO:GO:0007409 GO:GO:0030163 GeneTree:ENSGT00530000063070
GO:GO:0017111 GO:GO:0042407 GO:GO:0008053 GO:GO:0034982
TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0016265 GO:GO:0021675
GO:GO:0060013 EMBL:FP565334 Ensembl:ENSSSCT00000025900
Uniprot:I3LLQ8
Length = 597
Score = 247 (92.0 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 55/146 (37%), Positives = 80/146 (54%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK-GVLLYGPPGTGKTLLARAV 433
D ++ V G + EI E + +K+P+ + LG PK G +L GPPGTGKTLLA+A
Sbjct: 95 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKKGAILTGPPGTGKTLLAKAT 153
Query: 434 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXX 493
A FI VSGSE ++ F+G G VR+LF +AR++AP I+F+
Sbjct: 154 AGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNF 213
Query: 494 XXXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T N+
Sbjct: 214 GGQSEQENTLNQLLVEMDGFNTTTNV 239
Score = 225 (84.3 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 51/118 (43%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F VI+A TNR DILDPALLRPGR DR+I PP+ + R I ++H R +
Sbjct: 228 VEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLK 287
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + RK+A L PG SGA+V VC EA + A R + Q+ FE A+ +V+
Sbjct: 288 LDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVI 345
Score = 68 (29.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
+L + GF ++ VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 300 KLASLTPGFSGA-DVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQP 357
>TAIR|locus:2044209 [details] [associations]
symbol:CDC48B "cell division cycle 48B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0051301 GO:GO:0005856 GO:GO:0015031 GO:GO:0007049
eggNOG:COG0464 HOGENOM:HOG000223225 GO:GO:0017111 EMBL:AC006836
GO:GO:0009524 EMBL:AY062443 EMBL:BT008371 IPI:IPI00527776
PIR:A84451 RefSeq:NP_178463.1 UniGene:At.27340
ProteinModelPortal:Q9ZPR1 SMR:Q9ZPR1 PaxDb:Q9ZPR1 PRIDE:Q9ZPR1
EnsemblPlants:AT2G03670.1 GeneID:814895 KEGG:ath:AT2G03670
GeneFarm:1901 TAIR:At2g03670 InParanoid:Q9ZPR1 OMA:RECNAHL
PhylomeDB:Q9ZPR1 ProtClustDB:CLSN2683845 Genevestigator:Q9ZPR1
GermOnline:AT2G03670 Uniprot:Q9ZPR1
Length = 603
Score = 268 (99.4 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 58/178 (32%), Positives = 95/178 (53%)
Query: 355 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK 414
KI + V P ++ + ++P T++ VGGL + K++++ +E P+KH F +GI+ +
Sbjct: 262 KIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMR 321
Query: 415 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 474
G+LL+GPPG KT LA+A A+ + +F +S +EL ++GEG ++R F AR +PS
Sbjct: 322 GILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPS 381
Query: 475 IIFMXXXXXXXXXXXXXXXXXXXXV-QRTMLELLNQLDGFEATKNIKGVCTEAGMYAL 531
IIF V +R + LL ++DG E K I + YA+
Sbjct: 382 IIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAI 439
Score = 202 (76.2 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 41/83 (49%), Positives = 58/83 (69%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR +D AL+RPGR D + PPP+ EAR +IL++H+R M L ++LRKIAE
Sbjct: 429 VLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEE 488
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
+GAE++G+C E+G +LRE
Sbjct: 489 TDLFTGAELEGLCRESGTVSLRE 511
Score = 188 (71.2 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 40/102 (39%), Positives = 66/102 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ +TNR+D +DPAL R GR D +E PNEE RL IL+++++K+NL ++L+ IA
Sbjct: 167 VVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAIS 226
Query: 610 MPGASGAEVKGVCTEAGMYALRERR--VHVTQEDFEMAVAKV 649
G GA+++ +C EA + A + + +T +DF++A + V
Sbjct: 227 CNGYVGADLEALCREATISASKRSSDSLILTSQDFKIAKSVV 268
Score = 186 (70.5 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 39/102 (38%), Positives = 60/102 (58%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GG + ++ ++E+I P ++P LG+ P+G+LLYGPPGTGKT L RAV +
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAH 83
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHA----PSIIFM 478
I +S + + GE +++RE F A HA PS+IF+
Sbjct: 84 LIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFI 125
Score = 45 (20.9 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRE 533
++ + D F + ++G+C E+G +LRE
Sbjct: 484 KIAEETDLFTGAE-LEGLCRESGTVSLRE 511
>ZFIN|ZDB-GENE-070912-46 [details] [associations]
symbol:afg3l2 "AFG3 ATPase family gene 3-like 2 (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 ZFIN:ZDB-GENE-070912-46 GO:GO:0016021 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
eggNOG:COG0465 GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
CTD:10939 MEROPS:M41.007 EMBL:BX000484 EMBL:BC155655
IPI:IPI00513225 RefSeq:NP_001104667.1 UniGene:Dr.82691 SMR:A9JRG9
STRING:A9JRG9 Ensembl:ENSDART00000089834 GeneID:569168
KEGG:dre:569168 NextBio:20889547 Uniprot:A9JRG9
Length = 800
Score = 252 (93.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 54/145 (37%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D ++ V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 299 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 357
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI V+GSE ++ F+G G VR+LFV+AR++AP I+F+
Sbjct: 358 GEANVPFITVNGSEFLEMFVGVGPARVRDLFVLARKNAPCILFIDEIDAVGRKRGRGNFG 417
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF N+
Sbjct: 418 GQSEQENTLNQLLVEMDGFNTATNV 442
Score = 224 (83.9 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 49/118 (41%), Positives = 70/118 (59%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F A V++A TNR DILDPAL+RPGR DR+I PP+ + R I ++H R +
Sbjct: 431 VEMDGFNTATNVVVLAGTNRPDILDPALMRPGRFDRQIYIGPPDIKGRASIFKVHLRPLK 490
Query: 597 LTRGIN----LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L ++ RK+A L PG SGA++ VC EA + A R + Q+ FE A+ +V+
Sbjct: 491 LEAELDKEALARKMAALTPGFSGADIANVCNEAALIAARHLSDAINQKHFEQAIERVI 548
Score = 67 (28.6 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
GF +I VC EA + A R + Q+ FE A+ +VI + +L P
Sbjct: 510 GFSGA-DIANVCNEAALIAARHLSDAINQKHFEQAIERVIGGLEKKTQVLQP 560
>TAIR|locus:2052806 [details] [associations]
symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
"thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
"chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA;TAS]
[GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
process" evidence=IDA] [GO:0072593 "reactive oxygen species
metabolic process" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
"photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
catabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0010206
"photosystem II repair" evidence=IMP] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
Genevestigator:O80860 Uniprot:O80860
Length = 695
Score = 280 (103.6 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 58/143 (40%), Positives = 84/143 (58%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T++ V G+D ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
F +SGSE V+ F+G G+ VR+LF A+E+AP I+F+
Sbjct: 284 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 343
Query: 497 XXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGFE +
Sbjct: 344 DEREQTLNQLLTEMDGFEGNTGV 366
Score = 190 (71.9 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR DILD ALLRPGR DR++ P+ + R DIL++H+ ++L IA
Sbjct: 368 VVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMR 427
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
PG SGA++ + EA + A R R ++ ++ + ++ +++
Sbjct: 428 TPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIV 468
>GENEDB_PFALCIPARUM|PF07_0047 [details] [associations]
symbol:PF07_0047 "cell division cycle ATPase,
putative" species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051726 "regulation of cell cycle"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0016887 GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 PANTHER:PTHR23077:SF18
SMART:SM01073 EMBL:AL844506 EMBL:M96757 RefSeq:XP_001349023.1
ProteinModelPortal:P46468 IntAct:P46468 MINT:MINT-1593477
PRIDE:P46468 EnsemblProtists:PF07_0047:mRNA GeneID:2655095
KEGG:pfa:PF07_0047 EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
Length = 1229
Score = 274 (101.5 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 55/149 (36%), Positives = 89/149 (59%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E D TYE +GG+ Q+ +I+E+IELP+K+PE+F ++GI+ PKGVL++G PGTGKT +A
Sbjct: 519 ENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIA 578
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
+A+A+ + ++G E++ K IGE + +R++F A E P IIF+
Sbjct: 579 KAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSK 638
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG + N+
Sbjct: 639 SNNELE---KRVVSQLLTLMDGLKKNNNV 664
Score = 239 (89.2 bits), Expect = 6.0e-26, Sum P(4) = 6.0e-26
Identities = 53/149 (35%), Positives = 80/149 (53%)
Query: 372 KVPDSTYEMVGGLDNQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
++P T+ +GG+ N++KE +KE I P+++ L++ KG+LLYGPPG GKTLLA
Sbjct: 927 QIPTVTWNDIGGM-NEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLA 985
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
+A+A+ + FI V G EL+ + GE VR+LF AR +P IIF
Sbjct: 986 KAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNS 1045
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG K I
Sbjct: 1046 NTNNDAS--DRVINQILTEIDGINEKKTI 1072
Score = 202 (76.2 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 46/112 (41%), Positives = 70/112 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+IE P P+E+ R +IL ++KM L +NLRKIA+
Sbjct: 666 VLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKE 725
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVH---VTQEDFEMAVAKVMQKDSEKNM 658
G GA++ +C EA + ++E +H + +EDF + K+ + +KNM
Sbjct: 726 CHGYVGADLAQLCFEAAIQCIKEH-IHFLDLDEEDF-IEFMKISVDEDKKNM 775
Score = 141 (54.7 bits), Expect = 9.2e-30, Sum P(3) = 9.2e-30
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DILD AL RPGR+D+ I P+ ++R I + + L +++ +A+
Sbjct: 1074 IIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKR 1133
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHV 637
G SGA++ +C A A++E +H+
Sbjct: 1134 TEGFSGADITNLCQSAVNEAIKET-IHL 1160
Score = 46 (21.3 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 88 ENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQ 147
EN++K N NE +V++ Y + V K+ + K ++ V K
Sbjct: 94 ENQKKKTNKNESYSNVNDKYEHNNNTAHFVQINYKNDQSNDTLSTYKNNN-EMTVEGKPN 152
Query: 148 NLRRLQAQRNELNAKVRML 166
NL + ++ N ++L
Sbjct: 153 NLASGEGKKEIHNTTQKIL 171
Score = 43 (20.2 bits), Expect = 6.0e-26, Sum P(4) = 6.0e-26
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNE 281
K + +AI + Y + E + + E EQ LR++ + +E
Sbjct: 574 KTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASE 618
Score = 41 (19.5 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 70 VTIPNREILTAFHKIIRKENKEKLQNAN 97
VT N+ +K+ K++ +K++N N
Sbjct: 198 VTHDNKNHTNYINKVENKQSDDKIKNLN 225
Score = 40 (19.1 bits), Expect = 3.9e-25, Sum P(4) = 3.9e-25
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 116 TVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNE 158
++ +AI + Y + E + + E EQ LR++ + +E
Sbjct: 576 SIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASE 618
>UNIPROTKB|P46468 [details] [associations]
symbol:PF07_0047 "Putative cell division cycle ATPase"
species:36329 "Plasmodium falciparum 3D7" [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0051726 "regulation of cell cycle" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0016887
GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 PANTHER:PTHR23077:SF18 SMART:SM01073 EMBL:AL844506
EMBL:M96757 RefSeq:XP_001349023.1 ProteinModelPortal:P46468
IntAct:P46468 MINT:MINT-1593477 PRIDE:P46468
EnsemblProtists:PF07_0047:mRNA GeneID:2655095 KEGG:pfa:PF07_0047
EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
Length = 1229
Score = 274 (101.5 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 55/149 (36%), Positives = 89/149 (59%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
E D TYE +GG+ Q+ +I+E+IELP+K+PE+F ++GI+ PKGVL++G PGTGKT +A
Sbjct: 519 ENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIA 578
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
+A+A+ + ++G E++ K IGE + +R++F A E P IIF+
Sbjct: 579 KAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSK 638
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG + N+
Sbjct: 639 SNNELE---KRVVSQLLTLMDGLKKNNNV 664
Score = 239 (89.2 bits), Expect = 6.0e-26, Sum P(4) = 6.0e-26
Identities = 53/149 (35%), Positives = 80/149 (53%)
Query: 372 KVPDSTYEMVGGLDNQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
++P T+ +GG+ N++KE +KE I P+++ L++ KG+LLYGPPG GKTLLA
Sbjct: 927 QIPTVTWNDIGGM-NEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLA 985
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
+A+A+ + FI V G EL+ + GE VR+LF AR +P IIF
Sbjct: 986 KAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNS 1045
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG K I
Sbjct: 1046 NTNNDAS--DRVINQILTEIDGINEKKTI 1072
Score = 202 (76.2 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 46/112 (41%), Positives = 70/112 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+IE P P+E+ R +IL ++KM L +NLRKIA+
Sbjct: 666 VLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAKE 725
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVH---VTQEDFEMAVAKVMQKDSEKNM 658
G GA++ +C EA + ++E +H + +EDF + K+ + +KNM
Sbjct: 726 CHGYVGADLAQLCFEAAIQCIKEH-IHFLDLDEEDF-IEFMKISVDEDKKNM 775
Score = 141 (54.7 bits), Expect = 9.2e-30, Sum P(3) = 9.2e-30
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DILD AL RPGR+D+ I P+ ++R I + + L +++ +A+
Sbjct: 1074 IIAATNRPDILDKALTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVDIHDMAKR 1133
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHV 637
G SGA++ +C A A++E +H+
Sbjct: 1134 TEGFSGADITNLCQSAVNEAIKET-IHL 1160
Score = 46 (21.3 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 88 ENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQ 147
EN++K N NE +V++ Y + V K+ + K ++ V K
Sbjct: 94 ENQKKKTNKNESYSNVNDKYEHNNNTAHFVQINYKNDQSNDTLSTYKNNN-EMTVEGKPN 152
Query: 148 NLRRLQAQRNELNAKVRML 166
NL + ++ N ++L
Sbjct: 153 NLASGEGKKEIHNTTQKIL 171
Score = 43 (20.2 bits), Expect = 6.0e-26, Sum P(4) = 6.0e-26
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNE 281
K + +AI + Y + E + + E EQ LR++ + +E
Sbjct: 574 KTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASE 618
Score = 41 (19.5 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 70 VTIPNREILTAFHKIIRKENKEKLQNAN 97
VT N+ +K+ K++ +K++N N
Sbjct: 198 VTHDNKNHTNYINKVENKQSDDKIKNLN 225
Score = 40 (19.1 bits), Expect = 3.9e-25, Sum P(4) = 3.9e-25
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 116 TVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNE 158
++ +AI + Y + E + + E EQ LR++ + +E
Sbjct: 576 SIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASE 618
>UNIPROTKB|Q55700 [details] [associations]
symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
[GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
"thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
OMA:NTASTRM Uniprot:Q55700
Length = 627
Score = 278 (102.9 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 58/142 (40%), Positives = 84/142 (59%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
++ V G+D +E++EV+ +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 171 FDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 229
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F +SGSE V+ F+G G+ VR+LF A+E+AP +IF+
Sbjct: 230 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGND 289
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGFE I
Sbjct: 290 EREQTLNQLLTEMDGFEGNTGI 311
Score = 188 (71.2 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR D+LD AL+RPGR DR++ P+ R +IL +H+R L +++ IA
Sbjct: 313 IIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARR 372
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
PG SGA++ + EA + R R+ +T + + AV +V+
Sbjct: 373 TPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVV 413
>UNIPROTKB|P0AAI3 [details] [associations]
symbol:ftsH species:83333 "Escherichia coli K-12"
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
"proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
[GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
"integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
Length = 644
Score = 261 (96.9 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 55/152 (36%), Positives = 86/152 (56%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M+ E +T+ V G D +E+ E++E ++ P F LG PKGVL+ GPPGTGKT
Sbjct: 141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 199
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A++ AP IIF+
Sbjct: 200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ ++L ++DGFE + I
Sbjct: 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291
Score = 206 (77.6 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 46/116 (39%), Positives = 68/116 (58%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D+LDPALLRPGR DR++ P+ R IL++H R++ L I+ IA
Sbjct: 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG 352
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
PG SGA++ + EA ++A R + V+ +FE A K+M ++M + + K
Sbjct: 353 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408
Score = 55 (24.4 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
GF ++ + EA ++A R + V+ +FE A K++M R
Sbjct: 355 GFSGA-DLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAER 398
Score = 38 (18.4 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 384 LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 420
LDN + + +V+ P + P L ++ I+ +LL G
Sbjct: 78 LDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIG 114
>UNIPROTKB|H0YJS8 [details] [associations]
symbol:PSMC6 "26S protease regulatory subunit 10B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR003959 Pfam:PF00004
GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
EMBL:AL133453 HGNC:HGNC:9553 Ensembl:ENST00000555339 Uniprot:H0YJS8
Length = 195
Score = 391 (142.7 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 76/139 (54%), Positives = 99/139 (71%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P RVAL + T+ + LP +VDPLV M E + +Y +GGL QI+E++EVIELP+
Sbjct: 55 PGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPL 114
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
+PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V S +V K+IGE +R
Sbjct: 115 TNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAR 174
Query: 460 MVRELFVMAREHAPSIIFM 478
++RE+F AR+H P IIFM
Sbjct: 175 LIREMFNYARDHQPCIIFM 193
>UNIPROTKB|Q9KU86 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
Uniprot:Q9KU86
Length = 651
Score = 253 (94.1 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 53/152 (34%), Positives = 86/152 (56%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
MM E +T+ V G D +++KE+++ ++ P F LG P GVL+ GPPGTGKT
Sbjct: 145 MMSEDQIKTTFSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKT 203
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A++ +P IIF+
Sbjct: 204 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQ 263
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ ++L ++DGFE + I
Sbjct: 264 RGAGVGGGHDEREQTLNQMLVEMDGFEGNEGI 295
Score = 214 (80.4 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 45/109 (41%), Positives = 66/109 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D+LDPALLRPGR DR++ P+ R IL++H RK+ L + IA
Sbjct: 297 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARG 356
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
PG SGA++ + EA ++A R + +V+ +FE+A K+M ++M
Sbjct: 357 TPGFSGADLANLVNEAALFAARGNKRNVSMVEFELAKDKIMMGAERRSM 405
Score = 62 (26.9 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
GF ++ + EA ++A R + +V+ +FE+A K++M R
Sbjct: 359 GFSGA-DLANLVNEAALFAARGNKRNVSMVEFELAKDKIMMGAER 402
>TIGR_CMR|VC_0637 [details] [associations]
symbol:VC_0637 "cell division protein FtsH" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
ProtClustDB:CLSK874054 Uniprot:Q9KU86
Length = 651
Score = 253 (94.1 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 53/152 (34%), Positives = 86/152 (56%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
MM E +T+ V G D +++KE+++ ++ P F LG P GVL+ GPPGTGKT
Sbjct: 145 MMSEDQIKTTFSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKT 203
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A++ +P IIF+
Sbjct: 204 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQ 263
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ ++L ++DGFE + I
Sbjct: 264 RGAGVGGGHDEREQTLNQMLVEMDGFEGNEGI 295
Score = 214 (80.4 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 45/109 (41%), Positives = 66/109 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D+LDPALLRPGR DR++ P+ R IL++H RK+ L + IA
Sbjct: 297 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLANDVEPSLIARG 356
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
PG SGA++ + EA ++A R + +V+ +FE+A K+M ++M
Sbjct: 357 TPGFSGADLANLVNEAALFAARGNKRNVSMVEFELAKDKIMMGAERRSM 405
Score = 62 (26.9 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
GF ++ + EA ++A R + +V+ +FE+A K++M R
Sbjct: 359 GFSGA-DLANLVNEAALFAARGNKRNVSMVEFELAKDKIMMGAER 402
>TIGR_CMR|SO_1197 [details] [associations]
symbol:SO_1197 "ATP-dependent metalloprotease FtsH"
species:211586 "Shewanella oneidensis MR-1" [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0051301 "cell division" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006200
GO:GO:0006508 GO:GO:0004222 GO:GO:0016887 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0030163 TIGRFAMs:TIGR01241
HSSP:P28691 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
OMA:RSIIDQC RefSeq:NP_716822.2 ProteinModelPortal:Q8EHM2 SMR:Q8EHM2
GeneID:1169025 KEGG:son:SO_1197 PATRIC:23522048
ProtClustDB:CLSK906146 Uniprot:Q8EHM2
Length = 652
Score = 256 (95.2 bits), Expect = 8.1e-36, Sum P(2) = 8.1e-36
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
+M E +T+ V G D +E+KE+++ ++ P F LG P GVL+ GPPGTGKT
Sbjct: 146 LMSEDQIKTTFADVAGCDEAKEEVKELVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKT 204
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXX 487
LLA+A+A ++ F +SGS+ V+ F+G G+ VR++F A++ AP IIF+
Sbjct: 205 LLAKAIAGESKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQ 264
Query: 488 XXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ ++L ++DGFE + I
Sbjct: 265 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 296
Score = 210 (79.0 bits), Expect = 8.1e-36, Sum P(2) = 8.1e-36
Identities = 47/116 (40%), Positives = 67/116 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D+LD ALLRPGR DR++ P+ R IL++H RK+ L+ + IA
Sbjct: 298 VIAATNRPDVLDSALLRPGRFDRQVVVGLPDVRGREQILKVHMRKVPLSEDVKASVIARG 357
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 665
PG SGA++ + EA ++A R R V E+FE A K+M ++M + + K
Sbjct: 358 TPGFSGADLANLVNEAALFAARGNRRVVGMEEFERAKDKIMMGAERRSMVMSEAEK 413
Score = 62 (26.9 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
GF ++ + EA ++A R R V E+FE A K++M R
Sbjct: 360 GFSGA-DLANLVNEAALFAARGNRRVVGMEEFERAKDKIMMGAER 403
>WB|WBGene00007352 [details] [associations]
symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
"collagen and cuticulin-based cuticle development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
InParanoid:P54811 NextBio:884814 Uniprot:P54811
Length = 809
Score = 281 (104.0 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 362 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421
DP+ E + D Y+ +GG+ Q+ +IKE++ELP++HP+LF A+GI P+G+LL+GP
Sbjct: 193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGP 252
Query: 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXX 481
PGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F ++ P+I+F+
Sbjct: 253 PGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEI 312
Query: 482 XXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG + N+
Sbjct: 313 DAIAPKREKTNGEVE---RRIVSQLLTLMDGVKGRSNL 347
Score = 273 (101.2 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 55/161 (34%), Positives = 87/161 (54%)
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
K P V + P++T+ +GGL N +E++E+++ PV+HPE + G+ +GVL Y
Sbjct: 464 KSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFY 523
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPG GKTLLA+A+A+ + FI + G EL+ + GE VR++F AR AP ++F
Sbjct: 524 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFD 583
Query: 480 XXXXXXXXXXXXXXXXXXXVQ-RTMLELLNQLDGFEATKNI 519
R + ++L ++DG A KN+
Sbjct: 584 ELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNV 624
Score = 177 (67.4 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 41/110 (37%), Positives = 67/110 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E +R IL+ RK L++ ++L +A+
Sbjct: 626 IIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKN 685
Query: 610 MPGASGAEVKGVCTEAGMYALRER-----RVHVTQEDFEMAVAKVMQKDS 654
G SGA++ +C A A+RE R+ ++D + ++M+ D+
Sbjct: 686 TVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDA 735
Score = 174 (66.3 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +D AL R GR DR+I+ P+ RL+ILRIH++ M L ++L +IA
Sbjct: 349 VIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANE 408
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +C+EA + +RE+ + ED
Sbjct: 409 CHGFVGADLASLCSEAALQQIREKMELIDLED 440
Score = 51 (23.0 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
++ N+ GF ++ +C+EA + +RE+ + ED
Sbjct: 404 QIANECHGFVGA-DLASLCSEAALQQIREKMELIDLED 440
Score = 40 (19.1 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 232 KILPNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
K+ PN++ VD++ + K++EL L
Sbjct: 26 KVKPNRLIVDQSEQDDNSVIAVSQAKMDELGL 57
>UNIPROTKB|P54811 [details] [associations]
symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
NextBio:884814 Uniprot:P54811
Length = 809
Score = 281 (104.0 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 362 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421
DP+ E + D Y+ +GG+ Q+ +IKE++ELP++HP+LF A+GI P+G+LL+GP
Sbjct: 193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGP 252
Query: 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXX 481
PGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F ++ P+I+F+
Sbjct: 253 PGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEI 312
Query: 482 XXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG + N+
Sbjct: 313 DAIAPKREKTNGEVE---RRIVSQLLTLMDGVKGRSNL 347
Score = 273 (101.2 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 55/161 (34%), Positives = 87/161 (54%)
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
K P V + P++T+ +GGL N +E++E+++ PV+HPE + G+ +GVL Y
Sbjct: 464 KSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFY 523
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPG GKTLLA+A+A+ + FI + G EL+ + GE VR++F AR AP ++F
Sbjct: 524 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFD 583
Query: 480 XXXXXXXXXXXXXXXXXXXVQ-RTMLELLNQLDGFEATKNI 519
R + ++L ++DG A KN+
Sbjct: 584 ELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKNV 624
Score = 177 (67.4 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 41/110 (37%), Positives = 67/110 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+E +R IL+ RK L++ ++L +A+
Sbjct: 626 IIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKN 685
Query: 610 MPGASGAEVKGVCTEAGMYALRER-----RVHVTQEDFEMAVAKVMQKDS 654
G SGA++ +C A A+RE R+ ++D + ++M+ D+
Sbjct: 686 TVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDA 735
Score = 174 (66.3 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +D AL R GR DR+I+ P+ RL+ILRIH++ M L ++L +IA
Sbjct: 349 VIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANE 408
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +C+EA + +RE+ + ED
Sbjct: 409 CHGFVGADLASLCSEAALQQIREKMELIDLED 440
Score = 51 (23.0 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
++ N+ GF ++ +C+EA + +RE+ + ED
Sbjct: 404 QIANECHGFVGA-DLASLCSEAALQQIREKMELIDLED 440
Score = 40 (19.1 bits), Expect = 8.5e-36, Sum P(4) = 8.5e-36
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 232 KILPNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
K+ PN++ VD++ + K++EL L
Sbjct: 26 KVKPNRLIVDQSEQDDNSVIAVSQAKMDELGL 57
>MGI|MGI:1928277 [details] [associations]
symbol:Afg3l1 "AFG3(ATPase family gene 3)-like 1 (yeast)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
evidence=ISA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IGI] [GO:0008053 "mitochondrial fusion" evidence=IGI]
[GO:0008152 "metabolic process" evidence=ISA] [GO:0008233
"peptidase activity" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0030163 "protein catabolic process"
evidence=IEA] [GO:0034982 "mitochondrial protein processing"
evidence=IGI] [GO:0042407 "cristae formation" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1928277
GO:GO:0016021 GO:GO:0005739 GO:GO:0005524 GO:GO:0031966
GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 EMBL:AK012394 EMBL:AK159647 EMBL:AK167964
EMBL:AK168244 EMBL:BC056978 EMBL:AF329695 IPI:IPI00468514
IPI:IPI00652659 RefSeq:NP_473411.2 UniGene:Mm.287475
ProteinModelPortal:Q920A7 SMR:Q920A7 IntAct:Q920A7 STRING:Q920A7
MEROPS:M41.016 PhosphoSite:Q920A7 PaxDb:Q920A7 PRIDE:Q920A7
Ensembl:ENSMUST00000001520 Ensembl:ENSMUST00000098320 GeneID:114896
KEGG:mmu:114896 UCSC:uc009nwd.2 CTD:114896 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277
HOVERGEN:HBG050184 InParanoid:Q920A7 KO:K08956 OMA:WDEKDFR
OrthoDB:EOG4SBDXC NextBio:368917 Bgee:Q920A7 CleanEx:MM_AFG3L1
Genevestigator:Q920A7 GermOnline:ENSMUSG00000031967 GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
Uniprot:Q920A7
Length = 789
Score = 254 (94.5 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 53/145 (36%), Positives = 80/145 (55%)
Query: 375 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
D + V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 296 DVRFADVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATA 354
Query: 435 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
FI V+GSE ++ F+G G VR++F MAR+HAP I+F+
Sbjct: 355 GEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLG 414
Query: 495 XXXXVQRTMLELLNQLDGFEATKNI 519
+ T+ ++L ++DGF ++ N+
Sbjct: 415 GQSEQENTLNQMLVEMDGFNSSTNV 439
Score = 214 (80.4 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F + V++A TNR DILDPAL RPGR DR+I PP+ + R I ++H R +
Sbjct: 428 VEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLK 487
Query: 597 LTRGINL----RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L ++ RK+A L PG +GA++ VC EA + A R V + FE A+ +V+
Sbjct: 488 LDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERVI 545
Score = 66 (28.3 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDPA 563
GF +I VC EA + A R V + FE A+ +VI + +L P+
Sbjct: 507 GFTGA-DISNVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPS 558
>UNIPROTKB|Q3AFJ8 [details] [associations]
symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
Length = 619
Score = 264 (98.0 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 54/143 (37%), Positives = 85/143 (59%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T+ V G+D +E+ E++E +K+P ++ LG PKGVLL+G PGTGKTLLARA+A
Sbjct: 156 TFADVAGIDEVKEELAEIVEF-LKNPRKYNELGARIPKGVLLFGQPGTGKTLLARAIAGE 214
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
F +SGS+ V+ F+G G+ VR+LF A+++AP I+F+
Sbjct: 215 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGH 274
Query: 497 XXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF + + I
Sbjct: 275 DEREQTLNQLLVEMDGFNSNEGI 297
Score = 196 (74.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DILDPALLRPGR DR I P+ R +IL++H + L ++L +A
Sbjct: 299 IIAATNRPDILDPALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARR 358
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG +GA++ + EA + A R + + E+ E A+ +V+ +K+ I +
Sbjct: 359 TPGFTGADLANMVNEAALLAARRNKKVINMEEMEEAIERVIAGPEKKSKVISE 411
>TIGR_CMR|CHY_0214 [details] [associations]
symbol:CHY_0214 "cell division protein FtsH"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
"metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
Uniprot:Q3AFJ8
Length = 619
Score = 264 (98.0 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 54/143 (37%), Positives = 85/143 (59%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T+ V G+D +E+ E++E +K+P ++ LG PKGVLL+G PGTGKTLLARA+A
Sbjct: 156 TFADVAGIDEVKEELAEIVEF-LKNPRKYNELGARIPKGVLLFGQPGTGKTLLARAIAGE 214
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
F +SGS+ V+ F+G G+ VR+LF A+++AP I+F+
Sbjct: 215 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQRGAGLGGGH 274
Query: 497 XXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF + + I
Sbjct: 275 DEREQTLNQLLVEMDGFNSNEGI 297
Score = 196 (74.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DILDPALLRPGR DR I P+ R +IL++H + L ++L +A
Sbjct: 299 IIAATNRPDILDPALLRPGRFDRHIVVDTPDINGRKEILKVHVKGKPLGDDVDLDVLARR 358
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG +GA++ + EA + A R + + E+ E A+ +V+ +K+ I +
Sbjct: 359 TPGFTGADLANMVNEAALLAARRNKKVINMEEMEEAIERVIAGPEKKSKVISE 411
>DICTYBASE|DDB_G0288065 [details] [associations]
symbol:cdcD "CDC48 family AAA ATPase" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
[GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0051301 "cell division" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
InParanoid:P90532 Uniprot:P90532
Length = 793
Score = 302 (111.4 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 58/150 (38%), Positives = 86/150 (57%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP +T+E +GGL+ +E++E ++ PV+HPE F G+ KGVL YGPPG GKTLL
Sbjct: 466 VVEVPTTTWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLL 525
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ + FI + G EL+ + GE VRELF AR+ AP ++F
Sbjct: 526 AKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRG 585
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + ++L ++DG A KN+
Sbjct: 586 SSQGDAGGAGDRVINQILTEMDGMNAKKNV 615
Score = 278 (102.9 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 53/149 (35%), Positives = 91/149 (61%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
+++ + Y+ +GG+ Q+ +I+E++ELP++HP+LF +G+ PKG+LLYGPPG GKT++A
Sbjct: 194 DRLDEVGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIA 253
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXX 490
RAVA+ T F ++G E++ K GE +R+ F A ++APSIIF+
Sbjct: 254 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 313
Query: 491 XXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG ++ ++
Sbjct: 314 TQGEVE---RRIVSQLLTLMDGLKSRAHV 339
Score = 181 (68.8 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 39/105 (37%), Positives = 64/105 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+I+ P+ RL+I+RIH++ M L ++L +A
Sbjct: 341 VMGATNRPNSIDPALRRFGRFDREIDITIPDATGRLEIMRIHTKNMKLDETVDLEAVANE 400
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654
G GA++ +CTE+ + +RE+ + ED E A++++ S
Sbjct: 401 THGYVGADLAALCTESALQCIREKMDVIDLED-ETISAEILESMS 444
Score = 160 (61.4 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 37/106 (34%), Positives = 61/106 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
+I ATNR DI+DPA+LRPGR+D+ I P P+ +R+ IL+ K + + ++L + +
Sbjct: 617 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRVAILKACLNKSPVAKDVDLEFLGQK 676
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
G SGA++ +C A A+RE ++D E A+ D++
Sbjct: 677 TQGFSGADLTEICQRACKLAIRES----IEKDIESTKARQESGDTK 718
Score = 48 (22.0 bits), Expect = 3.8e-33, Sum P(4) = 3.8e-33
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
N+ G+ ++ +CTE+ + +RE+ + ED E A+++
Sbjct: 399 NETHGYVGA-DLAALCTESALQCIREKMDVIDLED-ETISAEIL 440
Score = 40 (19.1 bits), Expect = 2.8e-35, Sum P(3) = 2.8e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
K + A+ + G + + E + + E E NLR+ +A++N
Sbjct: 249 KTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294
Score = 39 (18.8 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 252 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294
Score = 37 (18.1 bits), Expect = 5.8e-35, Sum P(3) = 5.8e-35
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 232 KILPNKMDVDEAIKSSEGFKPYYVTKIEELQ 262
K PN++ V+EAI +++LQ
Sbjct: 19 KKAPNRLFVEEAINDDNSVVTLNPETMDQLQ 49
>UNIPROTKB|E1BFQ0 [details] [associations]
symbol:E1BFQ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042407 "cristae formation" evidence=IEA] [GO:0034982
"mitochondrial protein processing" evidence=IEA] [GO:0008053
"mitochondrial fusion" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005739 GO:GO:0005524
GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
GeneTree:ENSGT00530000063070 OMA:WDEKDFR GO:GO:0017111
GO:GO:0042407 GO:GO:0008053 GO:GO:0034982 TIGRFAMs:TIGR01241
EMBL:DAAA02046282 IPI:IPI00707325 Ensembl:ENSBTAT00000056979
Uniprot:E1BFQ0
Length = 802
Score = 248 (92.4 bits), Expect = 3.3e-35, Sum P(2) = 3.3e-35
Identities = 53/139 (38%), Positives = 78/139 (56%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
V G + EI E + +K+P+ + LG PKG LL GPPGTGKTLLA+A A
Sbjct: 305 VAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGALLTGPPGTGKTLLAKATAGEAGVP 363
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQ 500
FI V+GSE ++ F+G G VR++F +AR++AP I+F+ +
Sbjct: 364 FITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFVDEIDAIGRKRGRGHFGGQSEQE 423
Query: 501 RTMLELLNQLDGFEATKNI 519
T+ +LL ++DGF +T N+
Sbjct: 424 NTLNQLLVEMDGFNSTTNV 442
Score = 216 (81.1 bits), Expect = 3.3e-35, Sum P(2) = 3.3e-35
Identities = 48/120 (40%), Positives = 69/120 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F V++A TNR D+LDPAL+RPGR DR+I PP+ + R I R+H R +
Sbjct: 431 VEMDGFNSTTNVVVLAGTNRPDVLDPALMRPGRFDRQIYIGPPDIKGRSSIFRVHLRPLK 490
Query: 597 LTRGIN----LRKIAELMPG--ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L ++ RK+A L PG SGA++ VC EA + A R V ++ FE A+ +V+
Sbjct: 491 LDESLSKDALARKLAALTPGFTGSGADISNVCNEAALIAARHLNPSVGEKHFEQAIERVI 550
Score = 66 (28.3 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 512 GFEAT-KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR-IDILDP 562
GF + +I VC EA + A R V ++ FE A+ +VI + +L P
Sbjct: 510 GFTGSGADISNVCNEAALIAARHLNPSVGEKHFEQAIERVIGGLEKKTQVLQP 562
>UNIPROTKB|G4N517 [details] [associations]
symbol:MGG_05193 "Cell division control protein 48"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
Uniprot:G4N517
Length = 820
Score = 288 (106.4 bits), Expect = 6.0e-35, Sum P(2) = 6.0e-35
Identities = 56/142 (39%), Positives = 88/142 (61%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ +GG Q+ +I+E++ELP++HP+LF ++GI P+GVLLYGPPGTGKTL+ARAVA+ T
Sbjct: 221 YDDIGGCRKQMAQIREMVELPLRHPQLFKSIGIKPPRGVLLYGPPGTGKTLMARAVANET 280
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A +++P+IIF+
Sbjct: 281 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVE- 339
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG +A N+
Sbjct: 340 --RRVVSQLLTLMDGMKARSNV 359
Score = 286 (105.7 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 56/150 (37%), Positives = 85/150 (56%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP+ +E +GGLD ++++E ++ PV HPE F G++ +GVL YGPPGTGKT+L
Sbjct: 487 VVEVPNVRWEDIGGLDEVKQDLREQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTML 546
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+AVA+ FI V G EL+ + GE +R++F AR AP I+F+
Sbjct: 547 AKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDELDSIAKARG 606
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + +LL ++DG + KN+
Sbjct: 607 GSVGDAGGASDRVVNQLLTEMDGMTSKKNV 636
Score = 171 (65.3 bits), Expect = 6.0e-35, Sum P(2) = 6.0e-35
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L +IA
Sbjct: 361 VMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQIAAE 420
Query: 610 MPGASGAEVKGVCTEAGMYALRER 633
G G++V +C+EA M +RE+
Sbjct: 421 THGYVGSDVAALCSEAAMQQIREK 444
Score = 150 (57.9 bits), Expect = 9.5e-33, Sum P(2) = 9.5e-33
Identities = 47/129 (36%), Positives = 68/129 (52%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK---VIMATNRIDILDPA 563
L++LD + G +AG + R +T+ D M K VI ATNR + LDPA
Sbjct: 595 LDELDSIAKARG--GSVGDAGGASDRVVNQLLTEMD-GMTSKKNVFVIGATNRPEQLDPA 651
Query: 564 LLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 623
L RPGR+D I P P+E RL IL+ RK ++ ++L+ IA G SGA++ +
Sbjct: 652 LCRPGRLDSLIYVPLPDELGRLSILKAQLRKTPVSDDVDLQYIANKTHGFSGADLGFITQ 711
Query: 624 EAGMYALRE 632
A A++E
Sbjct: 712 RAVKIAIKE 720
Score = 40 (19.1 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 518 NIKGVCTEAGMYALRER 534
++ +C+EA M +RE+
Sbjct: 428 DVAALCSEAAMQQIREK 444
>POMBASE|SPAC1565.08 [details] [associations]
symbol:cdc48 "AAA family ATPase Cdc48" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
"endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IGI] [GO:0033554 "cellular response to
stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
complex" evidence=ISO] [GO:0051230 "spindle disassembly"
evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
localization involved in endoplasmic reticulum polarization at cell
division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
GO:GO:0051230 Uniprot:Q9P3A7
Length = 815
Score = 285 (105.4 bits), Expect = 6.2e-35, Sum P(2) = 6.2e-35
Identities = 54/142 (38%), Positives = 88/142 (61%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ +GG Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A +++P+IIF+
Sbjct: 283 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVE- 341
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG +A N+
Sbjct: 342 --RRVVSQLLTLMDGMKARSNV 361
Score = 272 (100.8 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 54/150 (36%), Positives = 84/150 (56%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP+ +E +GGL+ +E++E +++PV + E F G+ KGVL +GPPGTGKTLL
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+A+A+ FI V G EL+ + GE VR++F AR AP ++F+
Sbjct: 548 AKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARG 607
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + +LL ++DG + KN+
Sbjct: 608 ASAGDSGGG-DRVVNQLLTEMDGVNSKKNV 636
Score = 174 (66.3 bits), Expect = 6.2e-35, Sum P(2) = 6.2e-35
Identities = 36/95 (37%), Positives = 60/95 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+ILRIH++ M L ++L +IA
Sbjct: 363 VMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAE 422
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEM 644
G G+++ +C+EA M +RE+ + ++ E+
Sbjct: 423 THGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEI 457
Score = 165 (63.1 bits), Expect = 9.6e-34, Sum P(3) = 9.6e-34
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D +DPAL+RPGR+D+ I P P+EEAR IL+ R + ++LR +A+
Sbjct: 638 VIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKA 697
Query: 610 MPGASGAEVKGVCTEAGMYALRE 632
G SGA+++ V A A+++
Sbjct: 698 THGFSGADLEFVVQRAVKLAIKD 720
Score = 40 (19.1 bits), Expect = 9.6e-34, Sum P(3) = 9.6e-34
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEM 545
++ +C+EA M +RE+ + ++ E+
Sbjct: 430 DLASLCSEAAMQQIREKMDMIDLDEDEI 457
>FB|FBgn0261014 [details] [associations]
symbol:TER94 "TER94" species:7227 "Drosophila melanogaster"
[GO:0045169 "fusome" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=NAS]
[GO:0005783 "endoplasmic reticulum" evidence=NAS] [GO:0007030
"Golgi organization" evidence=IMP] [GO:0007317 "regulation of pole
plasm oskar mRNA localization" evidence=IMP] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=ISS] [GO:0000226
"microtubule cytoskeleton organization" evidence=IMP] [GO:0007029
"endoplasmic reticulum organization" evidence=IMP] [GO:0045451
"pole plasm oskar mRNA localization" evidence=IMP] [GO:0008103
"oocyte microtubule cytoskeleton polarization" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0042052
"rhabdomere development" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0032436 "positive regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0000502 "proteasome complex" evidence=NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0030433 "ER-associated protein catabolic
process" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
[GO:0043523 "regulation of neuron apoptotic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
InterPro:IPR003338 Pfam:PF02359 EMBL:AE013599 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0000226
GO:GO:0030154 GO:GO:0005811 GO:GO:0006810 GO:GO:0006200
GO:GO:0048477 GO:GO:0030433 GO:GO:0000502 eggNOG:COG0464
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 GO:GO:0007030
GO:GO:0007029 GO:GO:0016320 GO:GO:0045169 KO:K13525
InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
GeneTree:ENSGT00700000104534 GO:GO:0007317 EMBL:AF047037
EMBL:AF202034 EMBL:AF132553 RefSeq:NP_001097249.1
RefSeq:NP_001097250.1 RefSeq:NP_477369.1 UniGene:Dm.2968
ProteinModelPortal:Q7KN62 SMR:Q7KN62 IntAct:Q7KN62 STRING:Q7KN62
PaxDb:Q7KN62 PRIDE:Q7KN62 EnsemblMetazoa:FBtr0088391 GeneID:36040
KEGG:dme:Dmel_CG2331 UCSC:CG2331-RA CTD:36040 FlyBase:FBgn0261014
InParanoid:Q7KN62 OMA:RRGTDVN OrthoDB:EOG4TX96S GenomeRNAi:36040
NextBio:796507 Bgee:Q7KN62 Uniprot:Q7KN62
Length = 801
Score = 293 (108.2 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 62/176 (35%), Positives = 97/176 (55%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
V + N Y + K P+ + V VE VP++T+ +GGL++ KE++E+++ PV+HP+
Sbjct: 444 VTMENFRYAMTKSSPSALRETV----VE-VPNTTWTDIGGLESVKKELQELVQYPVEHPD 498
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
F G+ +GVL YGPPG GKTLLA+A+A+ + FI V G EL+ + GE VR+
Sbjct: 499 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 558
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+F AR AP ++F R + ++L ++DG A KN+
Sbjct: 559 IFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNV 614
Score = 280 (103.6 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 56/158 (35%), Positives = 92/158 (58%)
Query: 362 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421
DP+ E + Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+L+YGP
Sbjct: 184 DPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 243
Query: 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXX 481
PGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F A +++P+IIF+
Sbjct: 244 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEI 303
Query: 482 XXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG + + ++
Sbjct: 304 DAIAPKRDKTHGEVE---RRIVSQLLTLMDGMKKSSHL 338
Score = 178 (67.7 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 47/128 (36%), Positives = 74/128 (57%)
Query: 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK---VIMATNRIDILDPAL 564
++LD + G +AG A R +T+ D M K +I ATNR DI+DPA+
Sbjct: 574 DELDSIAKARG--GNVGDAGGAADRVINQILTEMD-GMGAKKNVFIIGATNRPDIIDPAI 630
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
LRPGR+D+ I P P++++R IL+ + RK L + ++L IA++ G SGA++ +C
Sbjct: 631 LRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQR 690
Query: 625 AGMYALRE 632
A A+R+
Sbjct: 691 ACKLAIRQ 698
Score = 176 (67.0 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+I+ P+ RL++LRIH++ M L ++L +IA
Sbjct: 340 VMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQIAAE 399
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +C+EA + +RE+ + ED
Sbjct: 400 SHGHVGADLASLCSEAALQQIREKMDLIDLED 431
Score = 43 (20.2 bits), Expect = 7.3e-35, Sum P(3) = 7.3e-35
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 235 PNKMDVDEAIKSSEGFKPYYVTKIEELQL 263
PN++ V+EA K++ELQL
Sbjct: 20 PNRLIVEEAQNDDNSVVSLSQAKMDELQL 48
Score = 40 (19.1 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQED 542
++ +C+EA + +RE+ + ED
Sbjct: 407 DLASLCSEAALQQIREKMDLIDLED 431
Score = 39 (18.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 251 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293
Score = 39 (18.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 240 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
+ A+ + G + + E + + E E NLR+ +A++N
Sbjct: 251 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293
>GENEDB_PFALCIPARUM|PFF0940c [details] [associations]
symbol:PFF0940c "cell division cycle protein 48
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0051726 "regulation of cell cycle" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
ProteinModelPortal:C6KT34 PRIDE:C6KT34
EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
Uniprot:C6KT34
Length = 828
Score = 273 (101.2 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
EK+ + Y+ +GG Q+ +I+E+IELP++HP LF LG+ P+GVLLYGPPG+GKT +A
Sbjct: 199 EKLDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLYGPPGSGKTCIA 258
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R F A +++P+IIF+
Sbjct: 259 RAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAIIFI 306
Score = 268 (99.4 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 54/150 (36%), Positives = 80/150 (53%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP+ ++ +GGLD ++E+I P+ HP+ F+ G++ +GVL YGPPG GKTLL
Sbjct: 471 VVEVPNVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLL 530
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+AVA F+ + G EL+ + GE VRE+F AR AP ++F
Sbjct: 531 AKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLFFDELDSIGTQRG 590
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R M +LL ++DG KN+
Sbjct: 591 SSLGDGSGAGDRVMNQLLTEIDGVGPKKNL 620
Score = 185 (70.2 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 40/102 (39%), Positives = 64/102 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +DPAL R GR DR+I+ P++ R +ILRIH++ M L+ + L ++A
Sbjct: 346 VIAATNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVKLEELASN 405
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
G GA++ +CTEA + +RE+ + ED E+ +V++
Sbjct: 406 THGFVGADLAQLCTEAALTCIREKMDVIDLED-EIIDKEVLE 446
Score = 148 (57.2 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 36/107 (33%), Positives = 61/107 (57%)
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610
I ATNR ++LD ALLRPGR+D+ I P P+ AR+ IL RK + + + +A+
Sbjct: 623 IGATNRPELLDEALLRPGRLDQLIYIPLPDLGARISILTAILRKCPVAENVPIDFLAQKT 682
Query: 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
G SGA++ +C A A+R+ + + + + + +K++E+N
Sbjct: 683 AGFSGADLAELCQRAARAAIRDA-IDAEEMNKKSKLELSNKKENEQN 728
Score = 50 (22.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
EL + GF ++ +CTEA + +RE+ + ED
Sbjct: 401 ELASNTHGFVGA-DLAQLCTEAALTCIREKMDVIDLED 437
Score = 41 (19.5 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
K + A+ + G + + E + + E E NLRR +A++N
Sbjct: 254 KTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299
Score = 40 (19.1 bits), Expect = 5.5e-30, Sum P(3) = 5.5e-30
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLRR +A++N
Sbjct: 257 IARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299
>UNIPROTKB|C6KT34 [details] [associations]
symbol:PFF0940c "Cell division cycle protein 48 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0051726
"regulation of cell cycle" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
ProteinModelPortal:C6KT34 PRIDE:C6KT34
EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
Uniprot:C6KT34
Length = 828
Score = 273 (101.2 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 430
EK+ + Y+ +GG Q+ +I+E+IELP++HP LF LG+ P+GVLLYGPPG+GKT +A
Sbjct: 199 EKLDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLYGPPGSGKTCIA 258
Query: 431 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
RAVA+ T F ++G E++ K GE +R F A +++P+IIF+
Sbjct: 259 RAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAIIFI 306
Score = 268 (99.4 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 54/150 (36%), Positives = 80/150 (53%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V +VP+ ++ +GGLD ++E+I P+ HP+ F+ G++ +GVL YGPPG GKTLL
Sbjct: 471 VVEVPNVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLL 530
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
A+AVA F+ + G EL+ + GE VRE+F AR AP ++F
Sbjct: 531 AKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLFFDELDSIGTQRG 590
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R M +LL ++DG KN+
Sbjct: 591 SSLGDGSGAGDRVMNQLLTEIDGVGPKKNL 620
Score = 185 (70.2 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 40/102 (39%), Positives = 64/102 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +DPAL R GR DR+I+ P++ R +ILRIH++ M L+ + L ++A
Sbjct: 346 VIAATNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVKLEELASN 405
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 651
G GA++ +CTEA + +RE+ + ED E+ +V++
Sbjct: 406 THGFVGADLAQLCTEAALTCIREKMDVIDLED-EIIDKEVLE 446
Score = 148 (57.2 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 36/107 (33%), Positives = 61/107 (57%)
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELM 610
I ATNR ++LD ALLRPGR+D+ I P P+ AR+ IL RK + + + +A+
Sbjct: 623 IGATNRPELLDEALLRPGRLDQLIYIPLPDLGARISILTAILRKCPVAENVPIDFLAQKT 682
Query: 611 PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 657
G SGA++ +C A A+R+ + + + + + +K++E+N
Sbjct: 683 AGFSGADLAELCQRAARAAIRDA-IDAEEMNKKSKLELSNKKENEQN 728
Score = 50 (22.7 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
EL + GF ++ +CTEA + +RE+ + ED
Sbjct: 401 ELASNTHGFVGA-DLAQLCTEAALTCIREKMDVIDLED 437
Score = 41 (19.5 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 237 KMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 280
K + A+ + G + + E + + E E NLRR +A++N
Sbjct: 254 KTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299
Score = 40 (19.1 bits), Expect = 5.5e-30, Sum P(3) = 5.5e-30
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 117 VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRL--QAQRN 157
+ A+ + G + + E + + E E NLRR +A++N
Sbjct: 257 IARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299
>TAIR|locus:2103555 [details] [associations]
symbol:CIP111 "Cam interacting protein 111" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IDA;TAS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 EMBL:CP002686 GO:GO:0016887 GO:GO:0005516 HSSP:Q01853
eggNOG:COG0464 EMBL:AL390921 GO:GO:0009535 HOGENOM:HOG000223224
EMBL:AF217546 EMBL:AF217547 IPI:IPI00534707 PIR:T50927 PIR:T51257
RefSeq:NP_191228.1 UniGene:At.9830 ProteinModelPortal:Q9LET7
SMR:Q9LET7 IntAct:Q9LET7 STRING:Q9LET7 PRIDE:Q9LET7
EnsemblPlants:AT3G56690.1 GeneID:824836 KEGG:ath:AT3G56690
GeneFarm:2042 TAIR:At3g56690 InParanoid:Q9LET7 OMA:SEAKLNF
PhylomeDB:Q9LET7 ProtClustDB:CLSN2684205 Genevestigator:Q9LET7
Uniprot:Q9LET7
Length = 1022
Score = 271 (100.5 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 59/154 (38%), Positives = 83/154 (53%)
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIK-EIKEVIELPVKHPELFDALGIAQPKGVLL 418
K+ P ++ +VP +E VGG N++K ++ E +E P KH + F +G P G+L+
Sbjct: 705 KIRPSAMREVILEVPKVNWEDVGG-QNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILM 763
Query: 419 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
+GPPG KTL+ARAVA + F+ V G EL K++GE + VR LF AR +APSIIF
Sbjct: 764 FGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 823
Query: 479 XXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDG 512
R M +LL +LDG
Sbjct: 824 DEIDSLASIRGKENDGVSVS-DRVMSQLLVELDG 856
Score = 201 (75.8 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 51/181 (28%), Positives = 88/181 (48%)
Query: 381 VGGLDNQIKEIKEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439
+GGL + ++++I+ +K+ +LG+ KGVL++GPPGTGKT LAR A H+
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNS--LSSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGV 444
Query: 440 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXV 499
F V+G E++ +++GE + + E+F A P+++F+
Sbjct: 445 NFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEELS--- 501
Query: 500 QRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDI 559
QR + LLN +DG T + + ++ + D E+ + V +T R DI
Sbjct: 502 QRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIG-VPSSTQRSDI 560
Query: 560 L 560
L
Sbjct: 561 L 561
Score = 189 (71.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 45/114 (39%), Positives = 66/114 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D +D ALLRPGR DR + PPNE R IL+IH RK+ + I L+++A +
Sbjct: 865 VIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASI 924
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKL 663
G +GA++ +C EA + AL E + + + A + Q + + +S K L
Sbjct: 925 TKGYTGADISLICREAAIAALEES-LEMEEISMRHLKAAISQIEPTEILSYKAL 977
Score = 162 (62.1 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 41/111 (36%), Positives = 59/111 (53%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT-RGINLRKIAE 608
VI ATNR D ++PAL RPGR+DR+IE P+ R DIL I R M + I + ++A
Sbjct: 523 VIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAM 582
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMS 659
G GA++ +C EA LR R + + + + + +S NMS
Sbjct: 583 ATHGFVGADLSALCCEAAFVCLR-RHLDQSSSSSNLPLEEAPIAESSSNMS 632
Score = 42 (19.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 523 CTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILD 561
C+E + E + V EDFE A K+ + R IL+
Sbjct: 679 CSEQMLRKQGEHTLSVGFEDFENAKTKIRPSAMREVILE 717
Score = 39 (18.8 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 622 CTEAGMYALRERRVHVTQEDFEMAVAKV 649
C+E + E + V EDFE A K+
Sbjct: 679 CSEQMLRKQGEHTLSVGFEDFENAKTKI 706
>SGD|S000004389 [details] [associations]
symbol:AFG2 "ATPase of the CDC48/PAS1/SEC18 (AAA) family,
forms a hexameric complex" species:4932 "Saccharomyces cerevisiae"
[GO:0030687 "preribosome, large subunit precursor"
evidence=IDA;IMP] [GO:0042493 "response to drug" evidence=IMP]
[GO:0005622 "intracellular" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 SGD:S000004389 GO:GO:0005524 GO:GO:0042493
EMBL:BK006945 GO:GO:0016887 eggNOG:COG0464 HOGENOM:HOG000223225
KO:K14575 OrthoDB:EOG49CTH0 GO:GO:0042273 EMBL:L14615 EMBL:U19729
EMBL:AY693116 PIR:S39110 RefSeq:NP_013501.1
ProteinModelPortal:P32794 SMR:P32794 DIP:DIP-4470N IntAct:P32794
MINT:MINT-566202 STRING:P32794 PaxDb:P32794 PeptideAtlas:P32794
EnsemblFungi:YLR397C GeneID:851113 KEGG:sce:YLR397C CYGD:YLR397c
GeneTree:ENSGT00700000104502 OMA:MLLRCVA NextBio:967827
Genevestigator:P32794 GermOnline:YLR397C GO:GO:0030687
Uniprot:P32794
Length = 780
Score = 268 (99.4 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 57/148 (38%), Positives = 82/148 (55%)
Query: 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 431
++P + +GG + ++KE+I+LP++ E F LGI+ PKGVLLYGPPG KTL A+
Sbjct: 509 EMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAK 568
Query: 432 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXX 491
A+A + F+ V G E+ K++GE R +RE+F AR APSIIF
Sbjct: 569 ALATESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGS 628
Query: 492 XXXXXXXVQRTMLELLNQLDGFEATKNI 519
V + LLN++DG E K +
Sbjct: 629 STSAANHV---LTSLLNEIDGVEELKGV 653
Score = 261 (96.9 bits), Expect = 9.1e-34, Sum P(2) = 9.1e-34
Identities = 45/102 (44%), Positives = 72/102 (70%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
+Y VGGLD +I+ +K IE+P+ P LF + G++ P+G+LL+GPPGTGKT+L R VA+
Sbjct: 243 SYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVANT 302
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
+ + ++G +V K++GE +R++F AR++ PSIIF+
Sbjct: 303 SNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFI 344
Score = 188 (71.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 41/90 (45%), Positives = 59/90 (65%)
Query: 544 EMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR-GIN 602
E+ ++ ATNR D +D ALLRPGR+DR I PP+ ARL+IL+ ++K N G++
Sbjct: 649 ELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVD 708
Query: 603 LRKIAELMPGASGAEVKGVCTEAGMYALRE 632
L ++A+ G SGAEV +C EAG+ A+ E
Sbjct: 709 LHELADRTEGYSGAEVVLLCQEAGLAAIME 738
Score = 141 (54.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGI----NLRK 605
VI ATNR + +DPAL RPGR D+++E P+ +AR DIL +M+ R + ++
Sbjct: 385 VIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKY 444
Query: 606 IAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
IA G GA++ +C E+ M ++ R T + + KV KD E M
Sbjct: 445 IASKTHGYVGADLTALCRESVMKTIQ--RGLGTDANIDKFSLKVTLKDVESAM 495
Score = 44 (20.5 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRE 533
EL ++ +G+ + + +C EAG+ A+ E
Sbjct: 711 ELADRTEGYSGAEVVL-LCQEAGLAAIME 738
>UNIPROTKB|Q60HE0 [details] [associations]
symbol:PEX6 "Peroxin Pex6p" species:9541 "Macaca
fascicularis" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005777 "peroxisome" evidence=ISS]
[GO:0005829 "cytosol" evidence=ISS] [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0006625 "protein targeting to
peroxisome" evidence=ISS] [GO:0007031 "peroxisome organization"
evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0016561 "protein import into peroxisome matrix,
translocation" evidence=ISS] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0032403 "protein complex binding" evidence=ISS]
[GO:0042623 "ATPase activity, coupled" evidence=ISS] [GO:0050821
"protein stabilization" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0050821
GO:GO:0005777 GO:GO:0032403 GO:GO:0008022 GO:GO:0042623
GO:GO:0016561 HOVERGEN:HBG002311 EMBL:AB125187
ProteinModelPortal:Q60HE0 Uniprot:Q60HE0
Length = 570
Score = 282 (104.3 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 64/150 (42%), Positives = 90/150 (60%)
Query: 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 431
K+P ++ VGGL KEI E I+LP++HPEL +LG+ + G+LL+GPPGTGKTLLA+
Sbjct: 288 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAK 345
Query: 432 AVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
AVA TEC TF+ V G EL+ ++G+ VRE+F AR AP IIF
Sbjct: 346 AVA--TECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRG 403
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+ R + +LL +LDG +T+++
Sbjct: 404 RSGDSGGV-MDRVVSQLLAELDGLHSTQDV 432
Score = 166 (63.5 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 536 VHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE--ARLDILRIHSR 593
+H TQ+ F VI ATNR D+LDPALLRPGR D K+ F NE+ ++L +L +R
Sbjct: 426 LHSTQDVF------VIGATNRPDLLDPALLRPGRFD-KLVFVGANEDRASQLRVLSAITR 478
Query: 594 KMNLTRGINLRKIAELMPGA-SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
K L ++L + + P +GA++ +C++A M A +RRVH +E E + +M
Sbjct: 479 KFKLEPSVSLVNVLDCCPPQLTGADLYSLCSDA-MTAALKRRVHDLEEGLEPGSSALM 535
Score = 83 (34.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
GL+ + E+ V++ P P AL + VLL GPPG GKT + A +
Sbjct: 27 GLEALVSELCAVLK-PRLQPG--GAL-LTGTSSVLLRGPPGCGKTTVVAAACSQLGLHLL 82
Query: 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
+V S L G ++ +F AR P+++ +
Sbjct: 83 KVPCSSLCADSSGAVETKLQAIFSRARRCRPAVLLL 118
Score = 51 (23.0 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPAL-LRPGRIDRKI 574
++ +C++A M A +RRVH +E E + +M T D+L A L+P ++++
Sbjct: 503 DLYSLCSDA-MTAALKRRVHDLEEGLEPG-SSALMLTME-DLLQAAARLQPSVSEQEL 557
>TIGR_CMR|CJE_1259 [details] [associations]
symbol:CJE_1259 "cell division protein FtsH"
species:195099 "Campylobacter jejuni RM1221" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
Uniprot:Q5HTY8
Length = 645
Score = 257 (95.5 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 56/148 (37%), Positives = 87/148 (58%)
Query: 367 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 426
L+ EK P + V G++ +E+KE+++ +K+PE + LG PKG+LL GPPGTGK
Sbjct: 167 LVNSEK-PKVKFSDVAGVEEAKEEVKEIVDF-LKYPERYIKLGAKIPKGLLLVGPPGTGK 224
Query: 427 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXX 486
TLLA+AVA + F VSGS ++ F+G G+ VR+LF A++ AP+I+F+
Sbjct: 225 TLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFIDEIDAIGK 284
Query: 487 XXXXXXXXXXXXV-QRTMLELLNQLDGF 513
++T+ +LL ++DGF
Sbjct: 285 SRAASGMMGGNDEREQTLNQLLAEMDGF 312
Score = 194 (73.4 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 42/118 (35%), Positives = 69/118 (58%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR ++LD ALLRPGR DR++ P+ + R DIL++H + + ++ + + IA L
Sbjct: 321 VLAATNRPEVLDAALLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARL 380
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDF----EMAVAKVMQKDSEKNMSIKKL 663
G +GA++ + EA + A R+ + +V Q D E A+A + +K N KK+
Sbjct: 381 TAGLAGADLANIINEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKI 438
Score = 47 (21.6 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+ +E + +L A ++ + EA + A R+ + +V Q D AV + I
Sbjct: 371 KVKVEDIARLTAGLAGADLANIINEAALLAGRDSKKYVEQNDLVEAVERAI 421
>TAIR|locus:2075581 [details] [associations]
symbol:ftsh7 "FTSH protease 7" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49
GO:GO:0009535 EMBL:AL133292 GO:GO:0004176 HOGENOM:HOG000217276
KO:K03798 EMBL:AY099737 EMBL:BT000368 IPI:IPI00522102 PIR:T45642
RefSeq:NP_566889.1 UniGene:At.43767 ProteinModelPortal:Q9SD67
SMR:Q9SD67 MEROPS:M41.A04 PaxDb:Q9SD67 PRIDE:Q9SD67
EnsemblPlants:AT3G47060.1 GeneID:823859 KEGG:ath:AT3G47060
GeneFarm:2514 TAIR:At3g47060 InParanoid:Q9SD67 OMA:SNQVQKV
PhylomeDB:Q9SD67 ProtClustDB:CLSN2689036 Genevestigator:Q9SD67
Uniprot:Q9SD67
Length = 802
Score = 256 (95.2 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 55/144 (38%), Positives = 85/144 (59%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T+ V G+D +E++E++E +++PE + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
E FI S SE V+ ++G G+ VR+LF A++ APSIIF+
Sbjct: 382 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGS 441
Query: 497 XXV-QRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF++ +
Sbjct: 442 NDEREQTLNQLLTEMDGFDSNSAV 465
Score = 198 (74.8 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 49/136 (36%), Positives = 79/136 (58%)
Query: 532 RERRVH--VTQED-FEMAVAKVIM-ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI 587
RE+ ++ +T+ D F+ A +++ ATNR D+LDPAL RPGR DR + P++ R I
Sbjct: 445 REQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESI 504
Query: 588 LRIHSRKMNLTRG--INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645
LR+H K L G +NL IA + G +GA++ + EA + A R+ + +V + DF A
Sbjct: 505 LRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQA 564
Query: 646 VAKVMQKDSEKNMSIK 661
V + + +K+ +K
Sbjct: 565 VERSIAGIEKKSARLK 580
>WB|WBGene00008053 [details] [associations]
symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
[GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=IMP] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IGI] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 285 (105.4 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 59/176 (33%), Positives = 95/176 (53%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
V + N + + K P+ + V VE P++T+ +GGL N +E++E+++ PV+HPE
Sbjct: 452 VTMENFRFAMGKSSPSALREAV----VE-TPNTTWSDIGGLQNVKRELQELVQYPVEHPE 506
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
+ G+ +GVL YGPPG GKTLLA+A+A+ + FI + G EL+ + GE VR+
Sbjct: 507 KYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRD 566
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+F AR AP ++F R + ++L ++DG A KN+
Sbjct: 567 VFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNV 622
Score = 277 (102.6 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 49/117 (41%), Positives = 81/117 (69%)
Query: 362 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421
DP+ E + + Y+ +GG+ Q+ +IKE++ELP++HP+LF A+G+ P+G+LL+GP
Sbjct: 192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGP 251
Query: 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
PGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F +++P+I+F+
Sbjct: 252 PGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFI 308
Score = 175 (66.7 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 47/127 (37%), Positives = 70/127 (55%)
Query: 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM--ATNRIDILDPALL 565
++LD + G +AG A R +T+ D A V + ATNR DI+DPA+L
Sbjct: 582 DELDSIAKARG--GSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVL 639
Query: 566 RPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 625
RPGR+D+ I P P+E +RL I + RK L+ ++L +A+ G SGA++ +C A
Sbjct: 640 RPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRA 699
Query: 626 GMYALRE 632
A+RE
Sbjct: 700 CKLAIRE 706
Score = 172 (65.6 bits), Expect = 7.9e-34, Sum P(2) = 7.9e-34
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +D AL R GR DR+I+ P+ RL+ILRIH++ M L ++L ++A
Sbjct: 348 VIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANE 407
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +C+EA + +RE+ + ED
Sbjct: 408 CHGFVGADLASLCSEAAIQQIREKMELIDLED 439
Score = 49 (22.3 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
++ N+ GF ++ +C+EA + +RE+ + ED
Sbjct: 403 QVANECHGFVGA-DLASLCSEAAIQQIREKMELIDLED 439
>UNIPROTKB|P54812 [details] [associations]
symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
Length = 810
Score = 285 (105.4 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 59/176 (33%), Positives = 95/176 (53%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
V + N + + K P+ + V VE P++T+ +GGL N +E++E+++ PV+HPE
Sbjct: 452 VTMENFRFAMGKSSPSALREAV----VE-TPNTTWSDIGGLQNVKRELQELVQYPVEHPE 506
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
+ G+ +GVL YGPPG GKTLLA+A+A+ + FI + G EL+ + GE VR+
Sbjct: 507 KYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRD 566
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+F AR AP ++F R + ++L ++DG A KN+
Sbjct: 567 VFDKARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNV 622
Score = 277 (102.6 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 49/117 (41%), Positives = 81/117 (69%)
Query: 362 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 421
DP+ E + + Y+ +GG+ Q+ +IKE++ELP++HP+LF A+G+ P+G+LL+GP
Sbjct: 192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGP 251
Query: 422 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
PGTGKTL+ARAVA+ T F ++G E++ K GE +R+ F +++P+I+F+
Sbjct: 252 PGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFI 308
Score = 175 (66.7 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 47/127 (37%), Positives = 70/127 (55%)
Query: 508 NQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM--ATNRIDILDPALL 565
++LD + G +AG A R +T+ D A V + ATNR DI+DPA+L
Sbjct: 582 DELDSIAKARG--GSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVL 639
Query: 566 RPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 625
RPGR+D+ I P P+E +RL I + RK L+ ++L +A+ G SGA++ +C A
Sbjct: 640 RPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRA 699
Query: 626 GMYALRE 632
A+RE
Sbjct: 700 CKLAIRE 706
Score = 172 (65.6 bits), Expect = 7.9e-34, Sum P(2) = 7.9e-34
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR + +D AL R GR DR+I+ P+ RL+ILRIH++ M L ++L ++A
Sbjct: 348 VIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANE 407
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQED 641
G GA++ +C+EA + +RE+ + ED
Sbjct: 408 CHGFVGADLASLCSEAAIQQIREKMELIDLED 439
Score = 49 (22.3 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQED 542
++ N+ GF ++ +C+EA + +RE+ + ED
Sbjct: 403 QVANECHGFVGA-DLASLCSEAAIQQIREKMELIDLED 439
>TAIR|locus:2157637 [details] [associations]
symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA;IDA]
[GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
associated light-harvesting complex II catabolic process"
evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
"photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
Uniprot:Q9FH02
Length = 704
Score = 253 (94.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 56/151 (37%), Positives = 84/151 (55%)
Query: 371 EKVPDS--TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
++VP++ T+ V G D E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVA F + SE V+ F+G G+ VR+LF A+ AP I+F+
Sbjct: 299 LARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 358
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF +
Sbjct: 359 GAGMGGGNDEREQTINQLLTEMDGFSGNSGV 389
Score = 198 (74.8 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 37/113 (32%), Positives = 68/113 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D+LD ALLRPGR DR++ P+ R+ IL++HSR + + ++ K+A
Sbjct: 391 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARR 450
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG +GA+++ + EA + A R +++++ A+ +++ +KN + +
Sbjct: 451 TPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSE 503
Score = 44 (20.5 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 539 TQEDFEMAVAKVIMATNRIDILDPALLRPGRI 570
+Q+D+ MA A V+ A R ++++ A +R I
Sbjct: 634 SQKDYSMATADVVDAEVR-ELVEKAYVRAKEI 664
Score = 38 (18.4 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 638 TQEDFEMAVAKVMQKDSEKNMSIKKLW 664
+Q+D+ MA A V+ D+E ++K +
Sbjct: 634 SQKDYSMATADVV--DAEVRELVEKAY 658
Score = 37 (18.1 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 112 ERQRTVDEAIKSSEGF 127
ER++T+++ + +GF
Sbjct: 368 EREQTINQLLTEMDGF 383
>ASPGD|ASPL0000069340 [details] [associations]
symbol:AN7254 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEP]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0031134 "sister chromatid biorientation"
evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:1900182 "positive regulation of protein
localization to nucleus" evidence=IEA] [GO:0071630
"nucleus-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0071712 "ER-associated
misfolded protein catabolic process" evidence=IEA] [GO:0051228
"mitotic spindle disassembly" evidence=IEA] [GO:0016320
"endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
"piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
"mitochondria-associated protein catabolic process" evidence=IEA]
[GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
endoplasmic reticulum localization involved in endoplasmic
reticulum polarization at cell division site" evidence=IEA]
[GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
Length = 823
Score = 287 (106.1 bits), Expect = 7.8e-22, P = 7.8e-22
Identities = 62/176 (35%), Positives = 94/176 (53%)
Query: 344 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE 403
V + N Y L P+ L + +VE VP+ +E +GGL+ +E+ E ++ PV HPE
Sbjct: 468 VTMENFRYALGVSNPSA---LREVAVVE-VPNVRWEDIGGLEEVKRELIESVQYPVDHPE 523
Query: 404 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 463
F G++ +GVL YGPPGTGKT+LA+AVA+ FI V G EL+ + GE +R+
Sbjct: 524 KFQKFGLSPSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRD 583
Query: 464 LFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+F AR AP ++F+ R + +LL ++DG + KN+
Sbjct: 584 IFDKARAAAPCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNV 639
Score = 285 (105.4 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 54/142 (38%), Positives = 88/142 (61%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
Y+ +GG Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 224 YDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 283
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F ++G E++ K GE +R+ F A +++P+IIF+
Sbjct: 284 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVE- 342
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
+R + +LL +DG +A N+
Sbjct: 343 --RRVVSQLLTLMDGMKARSNV 362
Score = 166 (63.5 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR + +DPAL R GR DR+++ P+ RL+IL IH++ M L ++L IA
Sbjct: 364 VMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAE 423
Query: 610 MPGASGAEVKGVCTEAGMYALRER 633
G G+++ +C+EA M +RE+
Sbjct: 424 THGYVGSDLASLCSEAAMQQIREK 447
Score = 137 (53.3 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 49/155 (31%), Positives = 77/155 (49%)
Query: 507 LNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK---VIMATNRIDILDPA 563
L++LD ++ G +AG + R +T+ D M K VI ATNR + LD A
Sbjct: 598 LDELDSIAKSRG--GSVGDAGGASDRVVNQLLTEMD-GMTSKKNVFVIGATNRPEQLDAA 654
Query: 564 LLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 623
L+RPGR+D + P P++ +R IL+ RK + +++ IA G SGA++ V
Sbjct: 655 LVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIASKTHGFSGADLGFVTQ 714
Query: 624 EAGMYALRER-RVHVT-QEDFEMAVAKVMQKDSEK 656
A A++E + Q+ E A V +D E+
Sbjct: 715 RAVKLAIKESISAEIERQKQREAAGEDVKMEDEEE 749
Score = 39 (18.8 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 518 NIKGVCTEAGMYALRER 534
++ +C+EA M +RE+
Sbjct: 431 DLASLCSEAAMQQIREK 447
>WB|WBGene00004978 [details] [associations]
symbol:spg-7 species:6239 "Caenorhabditis elegans"
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0030163 "protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0008270 GO:GO:0006508
GO:GO:0000003 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
GeneTree:ENSGT00530000063070 HOGENOM:HOG000217277 KO:K08956
GO:GO:0017111 TIGRFAMs:TIGR01241 OMA:LYRFVTT GO:GO:0030968
EMBL:FO081580 HSSP:Q9LCZ4 RefSeq:NP_491165.2
ProteinModelPortal:Q9N3T5 SMR:Q9N3T5 STRING:Q9N3T5 MEROPS:M41.A10
PaxDb:Q9N3T5 EnsemblMetazoa:Y47G6A.10 GeneID:171915
KEGG:cel:CELE_Y47G6A.10 UCSC:Y47G6A.10 CTD:171915
WormBase:Y47G6A.10 InParanoid:Q9N3T5 NextBio:873225 Uniprot:Q9N3T5
Length = 782
Score = 228 (85.3 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 52/134 (38%), Positives = 74/134 (55%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
V G + EI E + +K+P+ + LG PKG +L GPPGTGKTLLA+A A
Sbjct: 295 VAGCEEAKIEIMEFVNF-LKNPQQYKDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVP 353
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQ 500
FI VSGSE ++ F+G G VR++F MAR+++P I+F+ Q
Sbjct: 354 FITVSGSEFLEMFVGVGPARVRDMFSMARKNSPCILFIDEIDAVGRKRGGKGGMGGHSEQ 413
Query: 501 R-TMLELLNQLDGF 513
T+ +LL ++DGF
Sbjct: 414 ENTLNQLLVEMDGF 427
Score = 225 (84.3 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 47/115 (40%), Positives = 70/115 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIH--SRKMNLTRGINLRKIA 607
VI ATNR+DILD ALLRPGR DR+I P P+ + R I R+H + +L + + RK+A
Sbjct: 436 VIAATNRVDILDSALLRPGRFDRQIYVPVPDIKGRASIFRVHLGPLRTSLDKTVLSRKLA 495
Query: 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG SGA++ VC EA + A R+ ++ + FE A+ +V+ +K ++K
Sbjct: 496 AHTPGFSGADISNVCNEAALIAARDANHEISNKHFEQAIERVVAGMEKKTQVLQK 550
Score = 69 (29.3 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 499 VQRTML--ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
+ +T+L +L GF +I VC EA + A R+ ++ + FE A+ +V+
Sbjct: 485 LDKTVLSRKLAAHTPGFSGA-DISNVCNEAALIAARDANHEISNKHFEQAIERVV 538
>ASPGD|ASPL0000062283 [details] [associations]
symbol:AN1366 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
EMBL:BN001308 HOGENOM:HOG000223225 GO:GO:0017111 OMA:REGFTTI
EnsemblFungi:CADANIAT00001245 Uniprot:C8VRW3
Length = 729
Score = 286 (105.7 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 63/161 (39%), Positives = 87/161 (54%)
Query: 357 LPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGV 416
LP K+ P +PD+T+ +G L E+ I P+KHPEL+ ++GI P GV
Sbjct: 448 LP-KIQPSSKREGFATIPDTTWADIGALSGIRDELATAIVDPIKHPELYASVGITAPTGV 506
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
LL+GPPG GKTLLA+AVA+ + FI V G EL+ K++GE R VR++FV AR P +I
Sbjct: 507 LLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRARSSIPCVI 566
Query: 477 FMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 517
F V T LL +LDG +++
Sbjct: 567 FFDELDALVPRRDDTLSEASARVVNT---LLTELDGLGSSR 604
Score = 198 (74.8 bits), Expect = 6.4e-24, Sum P(2) = 6.4e-24
Identities = 39/111 (35%), Positives = 68/111 (61%)
Query: 370 VEKVPDSTYEM--VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
V++ P + + +GGLD+ ++++ +++ LP+ P+++ A + P+GVLL+GPPG GKT
Sbjct: 154 VDRSPPTHVSLADLGGLDDVVQQLGDLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKT 213
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
++A A A FI +S +V GE + +RE F A+ AP +IF+
Sbjct: 214 MIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRLAPCLIFI 264
Score = 160 (61.4 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 40/117 (34%), Positives = 68/117 (58%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR DI+DPA+LRPGR++ + P+ R++IL+ R++ + +LR++AE
Sbjct: 609 VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLRRLAEE 668
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK--DSEKNMSIKKLW 664
G SGA++ + AG A++ RR + +DF A + + D +K +++ W
Sbjct: 669 CEGFSGADLTSLLRRAGYNAIK-RRDTIKFDDFVAAKSFIRPSVTDMKKYDKLRREW 724
Score = 149 (57.5 bits), Expect = 9.0e-23, Sum P(2) = 9.0e-23
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D LD AL R GR D++I P+E R ILR +RKM L ++ + +A+
Sbjct: 308 VLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLVDDLDFKTLAKR 367
Query: 610 MPGASGAEVKGVCTEAGMYALR 631
PG GA++ + + AG A++
Sbjct: 368 TPGFVGADLNDLVSTAGSTAIK 389
>TAIR|locus:2066128 [details] [associations]
symbol:ftsh3 "FTSH protease 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] InterPro:IPR000642
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005743 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0004222 EMBL:AC005315 GO:GO:0030163 eggNOG:COG0465
HOGENOM:HOG000217277 KO:K08956 OMA:WDEKDFR TIGRFAMs:TIGR01241
HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0004176 EMBL:BT002743 EMBL:AY063914
EMBL:AK226271 IPI:IPI00525466 PIR:T02738 RefSeq:NP_850129.1
UniGene:At.24335 ProteinModelPortal:Q84WU8 SMR:Q84WU8
MEROPS:M41.022 PaxDb:Q84WU8 PRIDE:Q84WU8 EnsemblPlants:AT2G29080.1
GeneID:817456 KEGG:ath:AT2G29080 GeneFarm:2506 TAIR:At2g29080
InParanoid:Q84WU8 PhylomeDB:Q84WU8 ProtClustDB:CLSN2692039
Genevestigator:Q84WU8 Uniprot:Q84WU8
Length = 809
Score = 245 (91.3 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 54/142 (38%), Positives = 79/142 (55%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
++ V G D +EI E + +K+P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F+ +SGS+ ++ F+G G VR LF AR+ APSIIF+
Sbjct: 380 GVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGND 439
Query: 498 XVQRTMLELLNQLDGFEATKNI 519
+ T+ +LL ++DGF T +
Sbjct: 440 ERESTLNQLLVEMDGFGTTAGV 461
Score = 208 (78.3 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 50/129 (38%), Positives = 72/129 (55%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F V++A TNR DILD ALLRPGR DR+I P+ + R I +I+ +K+
Sbjct: 450 VEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIK 509
Query: 597 LTRGINL--RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 654
L + +++A L PG +GA++ VC EA + A R VT FE A+ +V+
Sbjct: 510 LDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFESAIDRVIGGLE 569
Query: 655 EKNMSIKKL 663
+KN I KL
Sbjct: 570 KKNRVISKL 578
Score = 67 (28.6 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVI 551
GF A +I VC EA + A R VT FE A+ +VI
Sbjct: 527 GF-AGADIANVCNEAALIAARHEGATVTMAHFESAIDRVI 565
Score = 41 (19.5 bits), Expect = 9.8e-34, Sum P(3) = 9.8e-34
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 87 KENKEKLQNANEGEM 101
KE EK +N N G+M
Sbjct: 113 KEGSEKNENENVGDM 127
>UNIPROTKB|E9PMD8 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001824 "blastocyst development" evidence=IEA] [GO:0022624
"proteasome accessory complex" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR003959
Pfam:PF00004 GO:GO:0005524 GO:GO:0001824 EMBL:AC090559
HGNC:HGNC:9549 ChiTaRS:PSMC3 IPI:IPI00978171 SMR:E9PMD8
Ensembl:ENST00000530651 Ensembl:ENST00000530887 Uniprot:E9PMD8
Length = 260
Score = 371 (135.7 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 71/139 (51%), Positives = 98/139 (70%)
Query: 340 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 399
P V + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+
Sbjct: 112 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 171
Query: 400 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 459
H E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G++
Sbjct: 172 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 231
Query: 460 MVRELFVMAREHAPSIIFM 478
+VR+ F +A+E APSIIF+
Sbjct: 232 LVRDAFALAKEKAPSIIFI 250
>TAIR|locus:2154568 [details] [associations]
symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
"protein catabolic process" evidence=IEA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
light-harvesting complex II catabolic process" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
Length = 806
Score = 255 (94.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 54/144 (37%), Positives = 87/144 (60%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T+ V G+D +E++E++E +K+P+ + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 327 TFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 385
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXX 496
++ FI S SE V+ ++G G+ VR+LF A++ APSIIF+
Sbjct: 386 SDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVS 445
Query: 497 XXV-QRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF+++ +
Sbjct: 446 NDEREQTLNQLLTEMDGFDSSSAV 469
Score = 194 (73.4 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 48/136 (35%), Positives = 79/136 (58%)
Query: 532 RERRVH--VTQED-FEMAVAKVIM-ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDI 587
RE+ ++ +T+ D F+ + A +++ ATNR D+LDPAL RPGR DR + P++ R I
Sbjct: 449 REQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESI 508
Query: 588 LRIHSRKMNLTRG--INLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 645
L++H K L G +NL IA + G +GA++ + EA + A R+ ++ V + DF A
Sbjct: 509 LKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDFIHA 568
Query: 646 VAKVMQKDSEKNMSIK 661
V + + +K +K
Sbjct: 569 VERSIAGIEKKTARLK 584
>FB|FBgn0032450 [details] [associations]
symbol:CG5776 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005524 EMBL:AE014134 GO:GO:0006200 GO:GO:0016887 HSSP:Q01853
eggNOG:COG0464 KO:K14575 GeneTree:ENSGT00700000104502 OMA:MLLRCVA
EMBL:AY051725 RefSeq:NP_609585.1 UniGene:Dm.8715 SMR:Q9VK63
EnsemblMetazoa:FBtr0080407 EnsemblMetazoa:FBtr0329925 GeneID:34680
KEGG:dme:Dmel_CG5776 UCSC:CG5776-RA FlyBase:FBgn0032450
InParanoid:Q9VK63 OrthoDB:EOG4547DV GenomeRNAi:34680 NextBio:789659
Uniprot:Q9VK63
Length = 799
Score = 251 (93.4 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 50/162 (30%), Positives = 87/162 (53%)
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
++ P ++ + P+ + +GG +++ IE P+ H + F LGI P+G+L++
Sbjct: 516 RIKPSAMREVLIECPNVQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGIKPPRGILMF 575
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPG KT++A+A+A ++ F+ + G EL ++GE R VRE+F AR+ AP+I+F
Sbjct: 576 GPPGCSKTMIAKALATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVAPAIVFFD 635
Query: 480 XXXXXXXXXXXX--XXXXXXXVQRTMLELLNQLDGFEATKNI 519
+R + +LL +LDG EA +N+
Sbjct: 636 EIDAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQNV 677
Score = 198 (74.8 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 45/113 (39%), Positives = 68/113 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
++ ATNR D++D ALLRPGRIDR + P EAR +IL+I R M ++ +++ K+ +L
Sbjct: 679 IVAATNRPDMIDKALLRPGRIDRILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQL 738
Query: 610 MPGASGAEVKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKVMQKDSEKNMSI 660
G SGAE++ VC EA + AL + V DFE A+ V + S + + +
Sbjct: 739 TEGYSGAEIQAVCHEAALRALEQSFEAEDVKWTDFEHALKAVPPRTSPELLKL 791
Score = 122 (48.0 bits), Expect = 7.8e-20, Sum P(2) = 7.8e-20
Identities = 38/146 (26%), Positives = 61/146 (41%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-- 438
+GGLD Q++ ++E +E + L G+ +G+LLYG G GK+++ A+ E
Sbjct: 274 IGGLDRQLQLVEESMEYALGFRTL--PAGLRVSRGLLLYGATGCGKSMVLEAMCAVAEER 331
Query: 439 ----CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXX 494
IR++ E+ KF+GE + + +F A H P +
Sbjct: 332 SQGHVQLIRINSGEVYSKFLGETEQKLGAIFERAYNHYPHPTLLLIEDVHNLCPKQENSD 391
Query: 495 XXXXVQRTMLELLNQLDGFEATKNIK 520
V L LL+QL K K
Sbjct: 392 LVKRVSLAFLSLLDQLSSPSQLKGSK 417
Score = 99 (39.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILR--IHSRKMNLTRGINLRKIA 607
V+ +++ID L P++ R GR+D ++E P+ +ARL+I+R I S + L+ + +A
Sbjct: 420 VLATSSQIDTLHPSIRRAGRLDNEVELGAPSSQARLEIVRCLIKSVEHQLSDE-EVEHVA 478
Query: 608 ELMPGASGAEVKGVCTEAGMYA 629
+ G GA++ + A + A
Sbjct: 479 SITHGYVGADLANLVYAAMLQA 500
Score = 51 (23.0 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 504 LELLNQL-DGFEATKNIKGVCTEAGMYALRE--RRVHVTQEDFEMAVAKV 550
+E L QL +G+ + I+ VC EA + AL + V DFE A+ V
Sbjct: 732 MEKLVQLTEGYSGAE-IQAVCHEAALRALEQSFEAEDVKWTDFEHALKAV 780
>TAIR|locus:2011952 [details] [associations]
symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004222 "metalloendopeptidase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
"thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA]
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
Length = 716
Score = 250 (93.1 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 55/151 (36%), Positives = 84/151 (55%)
Query: 371 EKVPDS--TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
++VP++ ++ V G D E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
LARAVA F + SE V+ F+G G+ VR+LF A+ AP I+F+
Sbjct: 311 LARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 370
Query: 489 XXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
++T+ +LL ++DGF +
Sbjct: 371 GAGMGGGNDEREQTINQLLTEMDGFSGNSGV 401
Score = 197 (74.4 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 38/113 (33%), Positives = 68/113 (60%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
V+ ATNR D+LD ALLRPGR DR++ P+ R+ IL++HSR L + ++ K+A
Sbjct: 403 VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARR 462
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKK 662
PG +GA+++ + EA + A R +++++ A+ +++ +KN + +
Sbjct: 463 TPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSE 515
Score = 40 (19.1 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 539 TQEDFEMAVAKVIMATNRIDILDPALLRPGRI 570
+Q+D+ MA A ++ A R ++++ A R I
Sbjct: 646 SQKDYSMATADIVDAEVR-ELVEKAYKRATEI 676
Score = 37 (18.1 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 112 ERQRTVDEAIKSSEGF 127
ER++T+++ + +GF
Sbjct: 380 EREQTINQLLTEMDGF 395
>DICTYBASE|DDB_G0282241 [details] [associations]
symbol:DDB_G0282241 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 dictyBase:DDB_G0282241 GO:GO:0005524 eggNOG:COG0464
GO:GO:0017111 EMBL:AAFI02000046 RefSeq:XP_640304.1
ProteinModelPortal:Q54ST1 EnsemblProtists:DDB0205288 GeneID:8623480
KEGG:ddi:DDB_G0282241 InParanoid:Q54ST1 OMA:IEMISID Uniprot:Q54ST1
Length = 825
Score = 254 (94.5 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 47/152 (30%), Positives = 86/152 (56%)
Query: 369 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 428
+VE + + +++ +GGLD+ +E+++ IE P + E F+ G++ PKG++LYGPPG KT
Sbjct: 560 LVENISNVSWDDIGGLDDIKEELRQAIEWPNLYKESFEKFGLSPPKGIILYGPPGCSKTT 619
Query: 429 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXX 488
L +AVA ++ +F+ +SG+ + ++G+ + +R++F AR+ PSI+F
Sbjct: 620 LVKAVASSSKLSFLSLSGATIFSPYLGDSEQTIRDIFKKARQTTPSILFFDEIDAIVSKR 679
Query: 489 XXXXXXXXXXVQ-RTMLELLNQLDGFEATKNI 519
Q R + LN++DG E +
Sbjct: 680 NLSDNSSGDNAQSRVLSTFLNEMDGVEQLNGV 711
Score = 193 (73.0 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 44/114 (38%), Positives = 72/114 (63%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR+D++D ALLRPGR D+ +E P++ +RL IL+I ++ + L+ +NL +I+ L
Sbjct: 713 VIGATNRLDMIDNALLRPGRFDKILEIKLPDQLSRLKILKIKTKSIPLSDNVNLIEISNL 772
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVH--VTQEDFEMAVAKVMQKDSEKNMSIK 661
G SGA+++ +C EA +LR ++ V DF ++K+ + KN+ K
Sbjct: 773 TNGFSGADLENLCREASFQSLRRDLLNGFVEMYDFLNCLSKI--NNQSKNLENK 824
Score = 180 (68.4 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 37/104 (35%), Positives = 62/104 (59%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 440
+GGL+ QIK ++E++ P+ P++F L I PKG+LL GPPGTGKT L R V +
Sbjct: 289 IGGLNEQIKLLEEMMIYPILFPQVFKTLNIDPPKGILLKGPPGTGKTHLVRTVCDAYDIE 348
Query: 441 FIRVSGSELVQKFIGEGSRMVRELFV------MAREHAPSIIFM 478
I + +++ +IGE +R +F +A+ ++P ++F+
Sbjct: 349 MISIDCAKISGSYIGETEENLRNIFQEASDKSIAKSNSPIVVFI 392
Score = 154 (59.3 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 34/82 (41%), Positives = 53/82 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNL--TRGINLRKIA 607
+I ATNR + +D AL RPGR+DR+IE P PN++ RLDIL+++ K+ + T L +IA
Sbjct: 432 IIAATNRPNQIDNALRRPGRLDREIEIPVPNKQQRLDILKLYCSKLPISPTPSNLLDQIA 491
Query: 608 ELMPGASGAEVKGVCTEAGMYA 629
+ G GA ++ +C ++ A
Sbjct: 492 DETVGYVGANIQFLCRDSAFIA 513
Score = 45 (20.9 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 87 KENKEKLQNANEGEMDVDEAYTYEVERQRTVDEAIKSS 124
K N K QN + E + ++ Y E+E R E+IK++
Sbjct: 516 KYNLLKYQNNEQNENENEKKYLIEIEDFR---ESIKNN 550
>TIGR_CMR|CPS_3452 [details] [associations]
symbol:CPS_3452 "ATP-dependent metalloprotease FtsH"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
GO:GO:0004222 GO:GO:0016887 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0030163 eggNOG:COG0465 HOGENOM:HOG000217277
TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 OMA:RSIIDQC
RefSeq:YP_270126.1 ProteinModelPortal:Q47YJ4 SMR:Q47YJ4
STRING:Q47YJ4 GeneID:3519317 KEGG:cps:CPS_3452 PATRIC:21469851
BioCyc:CPSY167879:GI48-3480-MONOMER Uniprot:Q47YJ4
Length = 660
Score = 237 (88.5 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 48/144 (33%), Positives = 81/144 (56%)
Query: 376 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 435
+T+ V G D +++ E+++ ++ P F LG P G+LL G PGTGKTLLA+A+A
Sbjct: 151 TTFADVAGCDEAKEDVAELVDY-LREPSRFQKLGGRIPSGILLVGQPGTGKTLLAKAIAG 209
Query: 436 HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXX 495
+ F +SGS+ V+ F+G G+ VR++F A++ AP IIF+
Sbjct: 210 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGMGGG 269
Query: 496 XXXVQRTMLELLNQLDGFEATKNI 519
++T+ ++L ++DGFE + +
Sbjct: 270 HDEREQTLNQMLVEMDGFEGNEGV 293
Score = 209 (78.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 46/109 (42%), Positives = 64/109 (58%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
VI ATNR D+LDPALLRPGR DR++ P+ R IL++H RK+ L + IA
Sbjct: 295 VIAATNRPDVLDPALLRPGRFDRQVTVGLPDIRGREQILKVHMRKVPLGDDVKAEVIARG 354
Query: 610 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
PG SGA++ + EA + A R R V+ ++F+ A K+M K+M
Sbjct: 355 TPGFSGADLANLVNEAALCAARTARRVVSMKEFDAAKDKIMMGSERKSM 403
>UNIPROTKB|Q13608 [details] [associations]
symbol:PEX6 "Peroxisome assembly factor 2" species:9606
"Homo sapiens" [GO:0005778 "peroxisomal membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005777 "peroxisome" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006625 "protein targeting to
peroxisome" evidence=IMP] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0016561 "protein import into peroxisome matrix,
translocation" evidence=IMP] [GO:0050821 "protein stabilization"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IMP] [GO:0042623
"ATPase activity, coupled" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006200 "ATP catabolic process"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
GO:GO:0005829 GO:GO:0005524 GO:GO:0050821 GO:GO:0005777
GO:GO:0032403 GO:GO:0005778 eggNOG:COG0464 GO:GO:0042623
Orphanet:912 TCDB:3.A.20.1.1 Orphanet:772 Orphanet:44 GO:GO:0016561
HOGENOM:HOG000241031 KO:K13339 EMBL:U56602 EMBL:D83703
EMBL:AF108098 EMBL:AF108095 EMBL:AF108096 EMBL:AF108097
EMBL:AB051076 EMBL:BC048331 IPI:IPI00299182 PIR:S71090
RefSeq:NP_000278.3 UniGene:Hs.656425 ProteinModelPortal:Q13608
SMR:Q13608 IntAct:Q13608 MINT:MINT-1183928 STRING:Q13608
PhosphoSite:Q13608 DMDM:12644408 PaxDb:Q13608 PRIDE:Q13608
Ensembl:ENST00000304611 GeneID:5190 KEGG:hsa:5190 UCSC:uc003otf.3
CTD:5190 GeneCards:GC06M042978 HGNC:HGNC:8859 HPA:HPA025924
MIM:601498 MIM:614862 MIM:614863 neXtProt:NX_Q13608
PharmGKB:PA33201 HOVERGEN:HBG002311 InParanoid:Q13608 OMA:SWHDVGG
OrthoDB:EOG47WNNP PhylomeDB:Q13608 GenomeRNAi:5190 NextBio:20072
ArrayExpress:Q13608 Bgee:Q13608 CleanEx:HS_PEX6
Genevestigator:Q13608 GermOnline:ENSG00000124587 Uniprot:Q13608
Length = 980
Score = 282 (104.3 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 64/150 (42%), Positives = 90/150 (60%)
Query: 372 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 431
K+P ++ VGGL KEI E I+LP++HPEL +LG+ + G+LL+GPPGTGKTLLA+
Sbjct: 698 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAK 755
Query: 432 AVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXX 489
AVA TEC TF+ V G EL+ ++G+ VRE+F AR AP IIF
Sbjct: 756 AVA--TECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRG 813
Query: 490 XXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
+ R + +LL +LDG +T+++
Sbjct: 814 RSGDSGGV-MDRVVSQLLAELDGLHSTQDV 842
Score = 166 (63.5 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 536 VHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE--ARLDILRIHSR 593
+H TQ+ F VI ATNR D+LDPALLRPGR D K+ F NE+ ++L +L +R
Sbjct: 836 LHSTQDVF------VIGATNRPDLLDPALLRPGRFD-KLVFVGANEDRASQLRVLSAITR 888
Query: 594 KMNLTRGINLRKIAELMPGA-SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
K L ++L + + P +GA++ +C++A M A +RRVH +E E + +M
Sbjct: 889 KFKLEPSVSLVNVLDCCPPQLTGADLYSLCSDA-MTAALKRRVHDLEEGLEPGSSALM 945
Score = 93 (37.8 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
GL+ + E+ V++ P P AL + VLL GPPG GKT + A H +
Sbjct: 437 GLEALVSELCAVLK-PRLQPG--GAL-LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLL 492
Query: 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 478
+V S L + G ++ +F AR P+++ +
Sbjct: 493 KVPCSSLCAESSGAVETKLQAIFSRARRCRPAVLLL 528
Score = 52 (23.4 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 518 NIKGVCTEAGMYALRERRVHVTQEDFE-------MAVAKVIMATNRID--ILDPALLRPG 568
++ +C++A M A +RRVH +E E + + ++ A R+ + + LLR
Sbjct: 913 DLYSLCSDA-MTAALKRRVHDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYK 971
Query: 569 RIDRK 573
RI RK
Sbjct: 972 RIQRK 976
>SGD|S000003502 [details] [associations]
symbol:YTA7 "Protein that localizes to chromatin and
regulates histone expression" species:4932 "Saccharomyces
cerevisiae" [GO:0042393 "histone binding" evidence=IDA;IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031936 "negative regulation of chromatin silencing"
evidence=IMP] [GO:0003682 "chromatin binding" evidence=IMP;IDA]
[GO:0042406 "extrinsic to endoplasmic reticulum membrane"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR001487 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 SGD:S000003502
GO:GO:0005524 GO:GO:0005634 EMBL:BK006941 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0031936 eggNOG:COG0464
GO:GO:0017111 GO:GO:0042393 GO:GO:0042406 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 EMBL:Y07893 EMBL:X81072
GeneTree:ENSGT00550000074694 EMBL:Z73055 PIR:S64603
RefSeq:NP_011786.1 ProteinModelPortal:P40340 SMR:P40340
DIP:DIP-6557N IntAct:P40340 MINT:MINT-629064 STRING:P40340
PaxDb:P40340 EnsemblFungi:YGR270W GeneID:853186 KEGG:sce:YGR270W
CYGD:YGR270w HOGENOM:HOG000157282 OMA:YPELYQN OrthoDB:EOG473T0K
NextBio:973329 Genevestigator:P40340 GermOnline:YGR270W
Uniprot:P40340
Length = 1379
Score = 260 (96.6 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 52/139 (37%), Positives = 81/139 (58%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA--- 434
++ +GGLDN I ++KE++ LP+ +PEL+ I P+GVL +GPPGTGKTL+ARA+A
Sbjct: 412 FDDIGGLDNYIDQLKEMVALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALAASC 471
Query: 435 --HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXX 492
+ TF G++++ K++GE R +R LF A++H PSIIF
Sbjct: 472 SSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQ 531
Query: 493 XXXXXXVQRTMLELLNQLD 511
+ T+L L++ +D
Sbjct: 532 EQIHASIVSTLLALMDGMD 550
Score = 193 (73.0 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 44/117 (37%), Positives = 73/117 (62%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN-LRKIAE 608
VI ATNR D +DPAL RPGR DR+ FP P+ +AR IL+I +RK + N + K+A
Sbjct: 557 VIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAF 616
Query: 609 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAV--AKVMQKDSEKNMSIKKL 663
L G GA+++ +CTEA + +++ + + + ++ V +K+ K S+ +++KK+
Sbjct: 617 LTKGYGGADLRSLCTEAALISIQRSFPQIYRSNDKLLVDPSKIKVKVSDFMLALKKI 673
>UNIPROTKB|E9PN50 [details] [associations]
symbol:PSMC3 "26S protease regulatory subunit 6A"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC090559
HGNC:HGNC:9549 ChiTaRS:PSMC3 IPI:IPI00979951
ProteinModelPortal:E9PN50 SMR:E9PN50 Ensembl:ENST00000531051
ArrayExpress:E9PN50 Bgee:E9PN50 Uniprot:E9PN50
Length = 239
Score = 368 (134.6 bits), Expect = 2.3e-33, P = 2.3e-33
Identities = 70/136 (51%), Positives = 97/136 (71%)
Query: 343 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 402
R + +SY + + LP + D V M V++ P Y +GGLD QI+E+ E I LP+ H
Sbjct: 94 RQGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHK 153
Query: 403 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVR 462
E F+ LGI PKGVL+YGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G+++VR
Sbjct: 154 EKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVR 213
Query: 463 ELFVMAREHAPSIIFM 478
+ F +A+E APSIIF+
Sbjct: 214 DAFALAKEKAPSIIFI 229
>WB|WBGene00010562 [details] [associations]
symbol:cdc-48.3 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007091
"metaphase/anaphase transition of mitotic cell cycle" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0019901 "protein kinase
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0007052
GO:GO:0002119 GO:GO:0006469 GO:GO:0000003 GO:GO:0016887 HSSP:Q01853
eggNOG:COG0464 HOGENOM:HOG000223225 GeneTree:ENSGT00700000104502
GO:GO:0007091 EMBL:Z75712 KO:K13525 PIR:T23322 RefSeq:NP_492211.1
ProteinModelPortal:Q21222 SMR:Q21222 PaxDb:Q21222
EnsemblMetazoa:K04G2.3 GeneID:172586 KEGG:cel:CELE_K04G2.3
UCSC:K04G2.3 CTD:172586 WormBase:K04G2.3 InParanoid:Q21222
OMA:QVAPTIV NextBio:876139 Uniprot:Q21222
Length = 724
Score = 272 (100.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 54/160 (33%), Positives = 86/160 (53%)
Query: 360 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 419
++ P + +VP+ ++ +GG + EI++ + P KHPE F+ GI P G+LLY
Sbjct: 440 RIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLY 499
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMX 479
GPPG KTL+ARA+A + F+ V G EL K++G+ + +R+LF AR+ AP+I+F
Sbjct: 500 GPPGCSKTLIARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFD 559
Query: 480 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATKNI 519
R + +LL +LDG E + +
Sbjct: 560 EIDAVGSSRGSEKSSGVS--DRVLAQLLTELDGLEKSSRV 597
Score = 171 (65.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 44/106 (41%), Positives = 59/106 (55%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN-LRKIAE 608
++ ATNR D LD ALLRPGR+DR I P E R IL + ++KM + + K+ E
Sbjct: 599 LLAATNRPDQLDSALLRPGRLDRAIYVGLPCEVTRRAILEMRTKKMKFDDTVRTIDKLVE 658
Query: 609 LMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQK 652
G SGAE+ VC A M+A+RE V FE A+A V+ +
Sbjct: 659 KTSGYSGAELVAVCRTAAMFAMRESIDATIVQWTHFEQALAAVVSR 704
Score = 67 (28.6 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 381 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 434
+GG + +++ + PV+ E P VL++G PG+GKTLL + VA
Sbjct: 248 IGGCFTAKQVLEDYVISPVRQKE--------SPCSVLIWGLPGSGKTLLLKEVA 293
Score = 66 (28.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 501 RTMLELLNQLDGFEATKNIKGVCTEAGMYALRER-RVHVTQ-EDFEMAVAKVIMATNR-- 556
RT+ +L+ + G+ + + VC A M+A+RE + Q FE A+A V+ T
Sbjct: 651 RTIDKLVEKTSGYSGAELV-AVCRTAAMFAMRESIDATIVQWTHFEQALAAVVSRTEAYL 709
Query: 557 IDILD 561
++I D
Sbjct: 710 LEIYD 714
>CGD|CAL0002985 [details] [associations]
symbol:orf19.3949 species:5476 "Candida albicans" [GO:0042406
"extrinsic to endoplasmic reticulum membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0031936
"negative regulation of chromatin silencing" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] InterPro:IPR001487 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 CGD:CAL0002985
GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:1.20.920.10
SUPFAM:SSF47370 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721858.1 RefSeq:XP_722018.1 ProteinModelPortal:Q5AK72
STRING:Q5AK72 GeneID:3636302 GeneID:3636397 KEGG:cal:CaO19.11431
KEGG:cal:CaO19.3949 Uniprot:Q5AK72
Length = 1314
Score = 252 (93.8 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 52/139 (37%), Positives = 78/139 (56%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA--- 434
+ +VGGLDN I ++KE++ LP+ +PEL+ I P+GVL +GPPGTGKTL+ARA+A
Sbjct: 399 FSVVGGLDNYINQLKEMVALPLLYPELYQNFAITPPRGVLFHGPPGTGKTLMARALAASC 458
Query: 435 --HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXX 492
+ TF G++ + K++GE R +R LF A+ PSIIF
Sbjct: 459 STSERKITFFMRKGADCLSKWVGEAERQLRLLFEEAKNQQPSIIFFDEIDGLAPVRSSKQ 518
Query: 493 XXXXXXVQRTMLELLNQLD 511
+ T+L L++ +D
Sbjct: 519 EQIHASIVSTLLALMDGMD 537
Score = 200 (75.5 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 47/119 (39%), Positives = 77/119 (64%)
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTR-GINLRKIAE 608
VI ATNR D +DPAL RPGR DR+ FP P+ +R +IL+IH+RK N + L ++A+
Sbjct: 544 VIGATNRPDAIDPALRRPGRFDREFYFPLPDLGSRKEILKIHTRKWNPELPDLFLERLAQ 603
Query: 609 LMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEM--AVAKVMQKDSEKNMSIKKL 663
L G GA+++ +CTEA + +++ + +++ T E ++ + KV+ KD K +I+K+
Sbjct: 604 LTKGYGGADLRALCTEAALNSIQRKYPQIYGTNEKLKVNPSKVKVIAKDFMK--AIEKI 660
Score = 63 (27.2 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 603 LRKIAELMPGASGAEVKGVCTEAGM----------YALRER------RVHVTQEDFEMAV 646
L ++A+L G GA+++ +CTEA + Y E+ +V V +DF A+
Sbjct: 598 LERLAQLTKGYGGADLRALCTEAALNSIQRKYPQIYGTNEKLKVNPSKVKVIAKDFMKAI 657
Query: 647 AKVMQKDSEKNMS 659
K++ + S
Sbjct: 658 EKIVPSSARSTSS 670
Score = 51 (23.0 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 504 LELLNQLDGFEATKNIKGVCTEAGMYALRER--RVHVTQEDFEMAVAKV 550
LE L QL +++ +CTEA + +++ + +++ T E ++ +KV
Sbjct: 598 LERLAQLTKGYGGADLRALCTEAALNSIQRKYPQIYGTNEKLKVNPSKV 646
>CGD|CAL0004443 [details] [associations]
symbol:orf19.2057 species:5476 "Candida albicans" [GO:0005745
"m-AAA complex" evidence=IEA] [GO:0097002 "mitochondrial inner
boundary membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0006461 "protein complex assembly"
evidence=IEA] [GO:0006465 "signal peptide processing" evidence=IEA]
HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
PROSITE:PS00674 SMART:SM00382 CGD:CAL0004443 GO:GO:0016021
GO:GO:0005524 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
GO:GO:0030163 eggNOG:COG0465 KO:K08956 GO:GO:0017111
TIGRFAMs:TIGR01241 EMBL:AACQ01000031 EMBL:AACQ01000030
MEROPS:M41.003 RefSeq:XP_719505.1 RefSeq:XP_719629.1
ProteinModelPortal:Q5AD10 SMR:Q5AD10 GeneID:3638753 GeneID:3638884
KEGG:cal:CaO19.2057 KEGG:cal:CaO19.9604 Uniprot:Q5AD10
Length = 846
Score = 248 (92.4 bits), Expect = 6.3e-33, Sum P(2) = 6.3e-33
Identities = 53/143 (37%), Positives = 83/143 (58%)
Query: 378 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
++ V G+ +E+ E ++ +++PE ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 372 FKDVAGMAEAKQEVMEFVKF-LQNPEKYEKLGAKIPRGAILSGPPGTGKTLLAKATAGEA 430
Query: 438 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMXXXXXXXXXXXXXXXXXXX 497
F VSGSE V+ F+G G+ VR+LF ARE+APSI+F+
Sbjct: 431 GVPFYSVSGSEFVEMFVGVGASRVRDLFKTARENAPSIVFVDEIDAIGKQRSKGNATGAN 490
Query: 498 XVQRTML-ELLNQLDGFEATKNI 519
+ T L +LL ++DGF+ + ++
Sbjct: 491 DERETTLNQLLVEMDGFDTSDHV 513
Score = 195 (73.7 bits), Expect = 6.3e-33, Sum P(2) = 6.3e-33
Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 538 VTQEDFEMAVAKVIMA-TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
V + F+ + V++A TNR DILD AL+RPGR DR + P R +I +H +K+
Sbjct: 502 VEMDGFDTSDHVVVLAGTNRPDILDRALMRPGRFDRHVHIDNPELLGRKEIFDVHLQKIT 561
Query: 597 LTRGIN---LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
L + I+ ++A L PG SGA++ VC EA + A R VT FE+A+ +V+
Sbjct: 562 LQKDIDPDLSGRLAALTPGFSGADIANVCNEAALIAARYNAEFVTLRHFELAIERVI 618
Score = 68 (29.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 512 GFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID-ILDP 562
GF +I VC EA + A R VT FE+A+ +VI + +L+P
Sbjct: 580 GFSGA-DIANVCNEAALIAARYNAEFVTLRHFELAIERVIGGVEKKSKLLNP 630
Score = 40 (19.1 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 380 MVGGLDNQIKEIKEVIELPVKHPELFDAL 408
M+ D + KE +E+ + +P+L D +
Sbjct: 1 MLKEFDEKCKEFEEIKGVNTLYPDLVDII 29
WARNING: HSPs involving 422 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 665 601 0.00085 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 672
No. of states in DFA: 593 (63 KB)
Total size of DFA: 264 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 53.92u 0.10s 54.02t Elapsed: 00:00:40
Total cpu time: 53.98u 0.10s 54.08t Elapsed: 00:00:52
Start: Thu Aug 15 11:31:11 2013 End: Thu Aug 15 11:32:03 2013
WARNINGS ISSUED: 2