RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15936
(665 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 305 bits (783), Expect = e-100
Identities = 108/283 (38%), Positives = 159/283 (56%), Gaps = 30/283 (10%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 427
M+ E +T+ V G D +E+ E++E ++ P F LG PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 428 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 487
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A++ AP IIF+DEID++G
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 488 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAV 547
R GG E ++T+ ++L ++DGFE + I
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI---------------------------- 151
Query: 548 AKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIA 607
VI ATNR D+LDPALLRPGR DR++ P+ R IL++H R++ L I+ IA
Sbjct: 152 -IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 210
Query: 608 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
PG SGA++ + EA ++A R + V+ +FE A K+M
Sbjct: 211 RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253
Score = 48.3 bits (115), Expect = 1e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 519 IKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
+ + EA ++A R + V+ +FE A K++M
Sbjct: 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 299 bits (766), Expect = 5e-98
Identities = 112/275 (40%), Positives = 156/275 (56%), Gaps = 30/275 (10%)
Query: 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432
P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT LARA
Sbjct: 3 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG 492
VA FI SGS+ V+ F+G G+ VR+LF A+ HAP I+F+DEID++G R
Sbjct: 62 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 121
Query: 493 SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
GG+ E ++T+ +LL ++DGFE I V+
Sbjct: 122 GGGNDEREQTLNQLLVEMDGFEKDTAI-----------------------------VVMA 152
Query: 553 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612
ATNR DILDPALLRPGR DR+I P+ + R ILRIH+R L ++L +A+ PG
Sbjct: 153 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPG 212
Query: 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 647
GA+++ + EA + A RE R +T +D E A +
Sbjct: 213 FVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 247
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 232 bits (591), Expect = 4e-72
Identities = 100/292 (34%), Positives = 161/292 (55%), Gaps = 31/292 (10%)
Query: 373 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 432
VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLLA+A
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 60
Query: 433 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESG 492
+A+ + FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI +R +
Sbjct: 61 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 120
Query: 493 SGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
G R + ++L ++DG KN+ +I
Sbjct: 121 GDGGGAADRVINQILTEMDGMSTKKNV-----------------------------FIIG 151
Query: 553 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPG 612
ATNR DI+DPA+LRPGR+D+ I P P+E++R+ IL+ + RK + + ++L +A++ G
Sbjct: 152 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 211
Query: 613 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM--SIKK 662
SGA++ +C A A+RE + + E + E + I++
Sbjct: 212 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 263
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 184 bits (466), Expect = 4e-54
Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 49/289 (16%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
Y+ VGG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+
Sbjct: 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 61
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496
T F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R
Sbjct: 62 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHG 118
Query: 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
+R + +LL +DG + ++ V+ ATNR
Sbjct: 119 EVERRIVSQLLTLMDGLKQRAHV-----------------------------IVMAATNR 149
Query: 557 IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGA 616
+ +DPAL R GR DR+++ P+ RL+IL+IH++ M L ++L ++A G GA
Sbjct: 150 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 209
Query: 617 EVKGVCTEAGMYALRERR-----------------VHVTQEDFEMAVAK 648
++ +C+EA + A+R++ + VT +DF A+++
Sbjct: 210 DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 258
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 159 bits (403), Expect = 2e-44
Identities = 32/288 (11%), Positives = 81/288 (28%), Gaps = 57/288 (19%)
Query: 371 EKVPDSTYEMVGGLDNQIKEIKE--VIELPVKHPELFDALGIAQPKGVLL-YGPPGTGKT 427
+ G + + EL P + + G G+++ G +GKT
Sbjct: 78 DGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKT 137
Query: 428 LLARAVA--HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIG 485
L A+ + + V E + + + + V ++ +H +I +D + ++
Sbjct: 138 PLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI 195
Query: 486 SSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEM 545
+ + + G R +LL+ + A++
Sbjct: 196 GAAGGNTTSGGIS--RGAFDLLSDIGAMAASRGC-------------------------- 227
Query: 546 AVAKVIMATNRI---DILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN 602
VI + N D + + R + + + +L +
Sbjct: 228 ---VVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRL---- 280
Query: 603 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
++ E + + + ++ A+ V+
Sbjct: 281 ------------THTLQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVI 316
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 122 bits (306), Expect = 8e-31
Identities = 38/275 (13%), Positives = 76/275 (27%), Gaps = 56/275 (20%)
Query: 384 LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443
L + ++ V+ +K I + + L GP +GKT LA A+ +
Sbjct: 129 LHCLLPKMDSVVYDFLKC----MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 184
Query: 444 VSGSELVQKF-IGEGSRMVRELF------VMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496
V+ F +G +F PS ++ +D+
Sbjct: 185 VNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDN------------- 231
Query: 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
L + LDG + L ++ ++ + F I+ N
Sbjct: 232 ---------LRDYLDG-------------SVKVNLEKKHLNKRTQIFPP----GIVTMNE 265
Query: 557 IDILDPALLRPGRIDRKIEFPPPNEEAR-LDILRIHSRKMNLTRGINLRKIAELMPGASG 615
R ++I+F P + L+ K + + + L+
Sbjct: 266 ---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPV 320
Query: 616 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 650
AE + + ++ V
Sbjct: 321 AEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVA 355
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 114 bits (285), Expect = 4e-29
Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 40/261 (15%)
Query: 380 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 439
++ G+ + V++ + VLL GPP +GKT LA +A +
Sbjct: 7 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 66
Query: 440 TFIRVSGSELVQKFIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE 498
FI++ + + F + ++++F A + S + +D+I+ +
Sbjct: 67 PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI-------- 118
Query: 499 VQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRID 558
L+ V + + + +I T+R D
Sbjct: 119 ------------------------GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 154
Query: 559 ILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGAS---G 615
+L + I PN +L N IA+ + G G
Sbjct: 155 VLQEMEML-NAFSTTIHV--PNIATGEQLLEALELLGNFKD-KERTTIAQQVKGKKVWIG 210
Query: 616 AEVKGVCTEAGMYALRERRVH 636
+ + E + E RV
Sbjct: 211 IKKLLMLIEMSLQMDPEYRVR 231
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 111 bits (277), Expect = 6e-28
Identities = 30/274 (10%), Positives = 71/274 (25%), Gaps = 34/274 (12%)
Query: 388 IKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447
+ + +E ++ + P LL G PG+GKT L A+ T+ I +
Sbjct: 12 ENRLNDNLEELIQGK-----KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 66
Query: 448 ELVQ---KFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 504
Q F +++ ++ + G +
Sbjct: 67 TFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD-VPI 125
Query: 505 ELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPAL 564
+ L + + + R + +
Sbjct: 126 QTATMLQAKGYETKMYVMAVPKI--------------------NSYLGTIERYETMYADD 165
Query: 565 LRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 624
R K + ++ +H + + R E + S E + +
Sbjct: 166 PMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNR---EGVKLYSSLETPSISPK 222
Query: 625 AGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNM 658
+ R+ V+ ++ + + ++ QK
Sbjct: 223 ETLEKELNRK--VSGKEIQPTLERIEQKMVLNKH 254
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 94.5 bits (233), Expect = 4e-22
Identities = 38/304 (12%), Positives = 91/304 (29%), Gaps = 49/304 (16%)
Query: 366 SLMMVEKVPDSTY--EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 423
++++ + V +Y + + + Q++++ ++ +++P L G PG
Sbjct: 1 AIVVDDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPG 53
Query: 424 TGKTLLARAVAHHTECT----FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 479
TGKT+ R + + F+ ++G G R F+
Sbjct: 54 TGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLA 113
Query: 480 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVT 539
+ R + ++L+
Sbjct: 114 LLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL-----------------------GQE 150
Query: 540 QEDFEMAVAKVIMATNRIDILDPALLRPGRIDRK--IEFPPPNEEARLDILRIHSRKMNL 597
+ +++ + +L+ I K I F P ++ DIL ++
Sbjct: 151 ADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA 210
Query: 598 TRG---INLRKIAELMPGASGAEVKG--------VCTEAGMYALRERRVHVTQEDFEMAV 646
L+ IA++ + + + + A + R H+ ED +
Sbjct: 211 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 270
Query: 647 AKVM 650
+V+
Sbjct: 271 KEVL 274
Score = 39.0 bits (89), Expect = 0.001
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 522 VCTEAGMYALRERRVHVTQEDFEMAVAKVIM 552
+ + A + R H+ ED + +V+
Sbjct: 245 ILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 275
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 79.1 bits (194), Expect = 1e-16
Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 29/226 (12%)
Query: 379 EMVGGLDNQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGKTLLARAVAHHT 437
+ + G + + + + + +L + L PK +L+ GP G GKT +AR +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 438 ECTFIRVSGSELVQK-------FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIE 490
FI+V ++ + + I+F+DEID I
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-- 131
Query: 491 SGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 550
SG D + +LL ++G + + +
Sbjct: 132 EYSGADVSREGVQRDLLPLVEGSTVS-------------------TKHGMVKTDHILFIA 172
Query: 551 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMN 596
A D GR+ ++E + IL +
Sbjct: 173 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 218
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 75.8 bits (185), Expect = 6e-16
Identities = 46/275 (16%), Positives = 83/275 (30%), Gaps = 48/275 (17%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
T + G + ++++ +E E + +LL+GPPG GKT LA +AH
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGG- 495
SG + + + I+F+DEI + E
Sbjct: 59 LGVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAM 111
Query: 496 -DSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMAT 554
D + + + +I AT
Sbjct: 112 EDFVMDIVIGQGPAARTIRLELPRF-----------------------------TLIGAT 142
Query: 555 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGAS 614
R ++ LL I +E+ P E A+ + + +T +I G +
Sbjct: 143 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-T 200
Query: 615 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 649
K + +A +T+E A+A +
Sbjct: 201 MRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 235
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 71.7 bits (174), Expect = 2e-14
Identities = 26/275 (9%), Positives = 70/275 (25%), Gaps = 17/275 (6%)
Query: 383 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
+ + + + + + + G G GKT LA+
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNMI----YGSIGRVGIGKTTLAKFTVKRVSEAAA 75
Query: 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 502
+ + + + + + I + ++ + +
Sbjct: 76 KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN--LYVENHY 133
Query: 503 MLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDP 562
+L +L++ ++ I + E + V + +
Sbjct: 134 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG--VNRIGFLLVASDVRALSYMRE 191
Query: 563 ALLRP-GRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGIN---LRKIAELMPGASGAE- 617
+ + +I K+ P IL + L I+++ G +
Sbjct: 192 KIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 251
Query: 618 ----VKGVCTEAGMYALRERRVHVTQEDFEMAVAK 648
A A R ++++ AV++
Sbjct: 252 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 54.6 bits (130), Expect = 7e-09
Identities = 43/269 (15%), Positives = 82/269 (30%), Gaps = 45/269 (16%)
Query: 377 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
+ + G +N K++ +E E+ D + LL GPPG GKT LA +A
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHV--------LLAGPPGLGKTTLAHIIASE 58
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496
+ SG LV++ ++ ++F+DEI + + E
Sbjct: 59 LQTNIHVTSGPVLVKQGDMAA--------ILTSLERGDVLFIDEIHRLNKAVEE---LLY 107
Query: 497 SEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR 556
S ++ ++++ + +R T ++ AT R
Sbjct: 108 SAIEDFQIDIMIGKGPSAKS--------------IRIDIQPFT----------LVGATTR 143
Query: 557 IDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGA 616
+L L I +++F E I R S IA+ +
Sbjct: 144 SGLLSSPLRSRFGIILELDFYTVKELKE-IIKRAASLMDVEIEDAAAEMIAK-RSRGTPR 201
Query: 617 EVKGVCTEAGMYALRERRVHVTQEDFEMA 645
+ + + +
Sbjct: 202 IAIRLTKRVRDMLTVVKADRINTDIVLKT 230
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 50.2 bits (118), Expect = 3e-07
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 368 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPE----LFDALGIAQPKGVLLYGPPG 423
+ K + + V G + ++K + + G + +LYGPPG
Sbjct: 3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG 62
Query: 424 TGKTLLARAVAHHTECTF 441
GKT A VA
Sbjct: 63 IGKTTAAHLVAQELGYDI 80
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 47.4 bits (112), Expect = 4e-06
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGSRMVRELFVMARE 470
PK +L+ GP G GKT +AR +A FI+V ++ + ++G+ + +
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAM 107
Query: 471 HAPSIIFMDEIDSIGSSRIE 490
+ + + E
Sbjct: 108 KLVRQQEIAKNRARAEDVAE 127
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 45.5 bits (106), Expect = 9e-06
Identities = 29/221 (13%), Positives = 76/221 (34%), Gaps = 20/221 (9%)
Query: 398 PVKHPELF-------DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450
P + + F + L + L+ G TGK+ + + + +I + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 451 QKFIGEGSRMVRELFV----MAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 506
++ + EL + + + + I I E + + + + L
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 126
Query: 507 LNQLDGFEAT---------KNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRI 557
L + + + + + AL ++ + F M+ +++ + + +
Sbjct: 127 LESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYL 186
Query: 558 DILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLT 598
+ DP GR +E P + E ++ LR ++ ++
Sbjct: 187 RVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID 227
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 45.3 bits (106), Expect = 1e-05
Identities = 31/247 (12%), Positives = 64/247 (25%), Gaps = 21/247 (8%)
Query: 415 GVLLYGPPGTGKTLLARAVA--------------HHTECTFIRVSGSELVQKFIGEGSRM 460
GVL++G GTGK+ RA+A I + L I + + +
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 89
Query: 461 VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520
V ++ + + ++ S G E G + ++ N L+ +
Sbjct: 90 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-DHIVDLLL 148
Query: 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580
V R+ F V++ + + D R +E P
Sbjct: 149 DVAQSGENVVERDGLSIRHPARF------VLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR 202
Query: 581 EEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQE 640
+ + + L + ++ + A
Sbjct: 203 DVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAAL 262
Query: 641 DFEMAVA 647
+
Sbjct: 263 CIALGSD 269
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 42.1 bits (97), Expect = 1e-04
Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 19/243 (7%)
Query: 370 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 429
V+K + + + +K + + P P L LLYGP GTGK
Sbjct: 2 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHL------------LLYGPNGTGKKTR 49
Query: 430 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 489
A+ + ++ + + + +P + + D + RI
Sbjct: 50 CMALLESIFGPGV-----YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRI 104
Query: 490 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAK 549
Q ++ + DG K V ++ + + + + +
Sbjct: 105 VIQELLKEVAQMEQVDFQDSKDGLAH--RYKCVIINEANSLTKDAQAALRRTMEKYSKNI 162
Query: 550 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAEL 609
++ A ++ + + P +E + + + + ++ L L++IA+
Sbjct: 163 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 222
Query: 610 MPG 612
G
Sbjct: 223 SNG 225
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 42.0 bits (97), Expect = 1e-04
Identities = 33/241 (13%), Positives = 75/241 (31%), Gaps = 10/241 (4%)
Query: 392 KEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 449
E+I L L LG G L+G TGK+ L +A + G
Sbjct: 11 SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGK 70
Query: 450 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 509
EG+ L +A+ D ++++ +R + + +
Sbjct: 71 CLYIDTEGTFRPVRLVSIAQRFGLDP--DDALNNVAYARAYNADHQLRLLDAAAQMMSES 128
Query: 510 LDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGR 569
++ + + F A+ ++ ++ ++ +
Sbjct: 129 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA--Q 186
Query: 570 IDRKIEFPPPNEEARLDILRIH--SRKMNLTRGINLRKIAEL--MPGASGAEVKGVCTEA 625
+D + F P ++ + H + ++ +G +++ ++ P AE E
Sbjct: 187 VDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIYED 246
Query: 626 G 626
G
Sbjct: 247 G 247
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 41.7 bits (97), Expect = 2e-04
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI------GEGSRMVRELF 465
+LL GP G+GKTL+A+ +A H + + L + +R+++
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 466 VMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKG 521
++ I+F+DEID I D + LL ++G KG
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKG 182
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.2 bits (92), Expect = 4e-04
Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 8/240 (3%)
Query: 393 EVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 450
E+I++ EL L G ++G TGKT + +A + R G
Sbjct: 1 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 60
Query: 451 QKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 510
EG+ L +A + S D +D++ +R + + + ++
Sbjct: 61 MYIDTEGTFRPERLLAVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESR 118
Query: 511 DGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRI 570
+ + E + + + + ++ +
Sbjct: 119 YALLIVDSATALYRTD-YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 177
Query: 571 DRKIEFPPPNEEARLDIL-RIHSRKMNLTRGINLRKIAEL--MPGASGAEVKGVCTEAGM 627
+ P + +I+ + ++ L +G +I ++ P AE G+
Sbjct: 178 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGV 237
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 38.8 bits (89), Expect = 6e-04
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
+LL G PG+GK+ +A A+A+ + +L + L +++ +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR--IDPWLPQSHQQNRMIM 64
Query: 476 IFMDEI 481
++
Sbjct: 65 QIAADV 70
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 38.9 bits (89), Expect = 8e-04
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREH 471
K V + G +GK++L +A T G E V + +G + ++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 37.8 bits (86), Expect = 0.002
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTF 441
+L+ PG G L A++ + C
Sbjct: 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 37.8 bits (86), Expect = 0.003
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 2/94 (2%)
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
++ K V + E LG +G TGKT L+ + +
Sbjct: 11 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 70
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMDE 480
+ E + L +A + +
Sbjct: 71 GGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 104
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 36.9 bits (84), Expect = 0.003
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 455
+ ++L G GK+ + R + ++ L++
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 2/94 (2%)
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
K+ + + L LG ++G G+GKT LA +A +
Sbjct: 10 KKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL 69
Query: 447 SELVQKFIGEGSRMVRELFVMAREHAPSIIFMDE 480
+ V E + + +A+ + +
Sbjct: 70 NGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK 103
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 37.5 bits (86), Expect = 0.003
Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 22/196 (11%)
Query: 412 QPKGVLLY-GPPGTGKTLLARAVAHHTECTFIRV---------SGSELVQKFIG-EGSRM 460
+P G L+ GP G GKT + ++ +R + S L+ G G
Sbjct: 50 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ 109
Query: 461 VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520
L +H +++ +DEI+ T N + +
Sbjct: 110 GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTD----NNGRKADFRNVVL 165
Query: 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 580
+ T AG+ + + + +D + I I P R+D I F +
Sbjct: 166 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIK-----KIFTPEFR--NRLDNIIWFDHLS 218
Query: 581 EEARLDILRIHSRKMN 596
+ ++ ++
Sbjct: 219 TDVIHQVVDKFIVELQ 234
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 37.2 bits (86), Expect = 0.003
Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 57/218 (26%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR------ 469
VL+ G G GK ++AR + ++ + + ELF +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPF---VALNVASIPRDIFEAELFGYEKGAFTGA 82
Query: 470 --------EHAPS-IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 520
E A +F+DEI + E Q +L ++
Sbjct: 83 VSSKEGFFELADGGTLFLDEIGEL-----------SLEAQAKLLRVIES----------- 120
Query: 521 GVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATNR--IDILDPALLRPGRIDRKIEFP- 577
G G +E V+V +++ ATNR +++ R R
Sbjct: 121 GKFYRLG--GRKEIEVNV----------RILAATNRNIKELVKEGKFREDLYYRLGVIEI 168
Query: 578 --PPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGA 613
PP E + DI+ + + + +++ A
Sbjct: 169 EIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSA 206
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.4 bits (80), Expect = 0.010
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
+ V L GPPG GKT L + + + + V G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 35.7 bits (81), Expect = 0.011
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 402 PELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHH 436
L + G K +L G GTGKTLL +
Sbjct: 13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.4 bits (80), Expect = 0.016
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 388 IKEIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHH 436
+K+ V +L EL LG G G+GKT + +
Sbjct: 7 LKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 34.7 bits (79), Expect = 0.021
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 386 NQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443
+Q++ +K +IE ++ +L+ G + ++ + + E +
Sbjct: 1 DQLETLKRIIEK-------------SEGISILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 34.6 bits (79), Expect = 0.028
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA------------HH 436
KE++ I++ L + LL G G GKT +A +A
Sbjct: 25 KELERAIQV----------LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 74
Query: 437 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 496
+ + K+ G+ + + L + SI+F+DEI +I + SG D
Sbjct: 75 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD 134
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 34.6 bits (78), Expect = 0.028
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 390 EIKEVIELPVKHPELFDALGIAQPKG--VLLYGPPGTGKTLLARAVAHH 436
E + + ++ D P G L+ G GTGKTL + ++
Sbjct: 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 34.1 bits (78), Expect = 0.031
Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 60/214 (28%)
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH----------HTE 438
+EI+ I++ L +L G PG GKT + +A
Sbjct: 29 EEIRRTIQV----------LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 78
Query: 439 CTFIRVSGSELVQ--KFIGEGSRMVRELFVMAREHAPSII-FMDEIDSIGSSRIESGSGG 495
+ + LV K+ GE ++ + + ++I F+DE+ ++ + +G
Sbjct: 79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM----VGAGKAD 134
Query: 496 DSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERRVHVTQEDFEMAVAKVIMATN 555
+ ML+ + G T E+
Sbjct: 135 GAMDAGNMLKPALARGEL----HCVGATTLDEYRQYIEK--------------------- 169
Query: 556 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILR 589
D AL R R +K+ P+ E + ILR
Sbjct: 170 -----DAALER--RF-QKVFVAEPSVEDTIAILR 195
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.8 bits (76), Expect = 0.032
Identities = 17/162 (10%), Positives = 50/162 (30%), Gaps = 3/162 (1%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
++ GP G GK+ + +A + + + G + +G ++A
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVGGYRPPWESDELLALTWKNIT 63
Query: 476 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535
+ + E + + ++D E I E + R+
Sbjct: 64 DLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123
Query: 536 VHVTQEDFEMAVAKVIMATNRID--ILDPALLRPGRIDRKIE 575
+ + + + + + + + L+P ++ ++
Sbjct: 124 KDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVK 165
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 33.5 bits (75), Expect = 0.040
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRV 444
+L G G+GK+ +A VAH F+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDG 37
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 33.0 bits (74), Expect = 0.057
Identities = 20/146 (13%), Positives = 42/146 (28%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
+ GTGKT L + + IR + + + A +I
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 476 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALRERR 535
+ + ++ + + + M L E K+ + R
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Query: 536 VHVTQEDFEMAVAKVIMATNRIDILD 561
+ + +AVA + + +LD
Sbjct: 125 EELVIDRHVIAVASDVPLNLDVALLD 150
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 33.3 bits (75), Expect = 0.059
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 445
A P V++ G P +GK + + I
Sbjct: 1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAG 35
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.8 bits (73), Expect = 0.062
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444
+ + L GP G GK+ + R +A F
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 33.5 bits (75), Expect = 0.062
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVAHH 436
K I + P L L V L P G GK++LA +A
Sbjct: 4 KPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 52
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 33.2 bits (75), Expect = 0.072
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 22/94 (23%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ---KFIGEGSRM--------- 460
L G G GKT +AR +A C + V + I +G +
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 93
Query: 461 ------VRELFVMAREHAPS----IIFMDEIDSI 484
R+L + + +DE+ +
Sbjct: 94 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 127
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 32.6 bits (73), Expect = 0.082
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI----RVSGSELVQKFIGEGSRMVRELFVMAREH 471
+LL G PG GKT L + +A + +I +L + E + + + E
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 66
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 32.8 bits (73), Expect = 0.093
Identities = 17/72 (23%), Positives = 25/72 (34%)
Query: 417 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSII 476
L YGPPGTGKT A+ + S + G +VRE S
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 96
Query: 477 FMDEIDSIGSSR 488
++++
Sbjct: 97 SKHDLENYPCPP 108
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 32.5 bits (74), Expect = 0.11
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 409 GIAQPKGVLLYGPPGTGKTLLARAVAH 435
G + ++ GP TGK+ + H
Sbjct: 49 GTPKKNCLVFCGPANTGKSYFGMSFIH 75
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 32.2 bits (72), Expect = 0.13
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 413 PKGV--LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM 460
PKGV +L GPPG GK A +A + + + ++++ + GS +
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL--ATGDMLRAMVASGSEL 48
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.9 bits (71), Expect = 0.15
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 411 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444
++P V + G PG+GK + +
Sbjct: 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 31.9 bits (71), Expect = 0.15
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFI 442
+ + + G G G T + R +A F+
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.8 bits (71), Expect = 0.16
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
P+ V+ G PG GK+ + +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 47
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 31.0 bits (70), Expect = 0.16
Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 33/162 (20%)
Query: 134 KIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQE-QGSYVGEVVKPM-DKKK 191
+ E+ + + + +Q Q + A + L + L + QG E + P+
Sbjct: 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSF 61
Query: 192 VLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKMDVDEAIKSSEGFK 251
+ ++ + ++ + + I K + ++A++
Sbjct: 62 IKAELKDTSEVIMSVGAGVAI------------------------KKNFEDAME------ 91
Query: 252 PYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREEL 293
++ EL+ + + +NLR + +L+ + L +
Sbjct: 92 -SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 31.5 bits (70), Expect = 0.16
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 412 QPKG--VLLYGPPGTGKTLLARAVAHHTECTFI 442
QPKG +L+ G PGTGKT +A +A +
Sbjct: 2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 31.6 bits (70), Expect = 0.19
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIR 443
+ L G +GK +ARA+ R
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGGR 36
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 31.0 bits (69), Expect = 0.21
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFI 442
K ++ G G+GK+ LARA+A + F+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 31.1 bits (69), Expect = 0.24
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
PK VL+ G PG+GK+ + R +A +
Sbjct: 2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLL 30
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 30.7 bits (68), Expect = 0.32
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVREL 464
++L G P GK A+ + I S ++++ + GS + ++
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQI--STGDMLRAAVKSGSELGKQA 49
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.8 bits (68), Expect = 0.33
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 443
+ V L G G GKT ++ A+ + C I
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 31.3 bits (70), Expect = 0.34
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIGEGSRMVRELFV 466
+ L+G G+GK+++A ++ +++ SG+ F ++
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 106
Query: 467 MAREHAPSIIFMDEID 482
+ PS+ + +
Sbjct: 107 DDLLNFPSVEHVTSVV 122
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.2 bits (69), Expect = 0.37
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 384 LDNQIKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKTLLARAVAHHTECTFI 442
+ + + V L + D A+ +++ G GK+ R A
Sbjct: 5 IREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64
Query: 443 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEID 482
+ G ++++ + E + + L R + + I+
Sbjct: 65 KKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIE 104
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 30.7 bits (68), Expect = 0.41
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
+ + K + + G PG+GK + T +
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL 37
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 31.2 bits (70), Expect = 0.42
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 23/130 (17%)
Query: 389 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH------------H 436
+EI+ VI++ L +L G PG GKT + +A
Sbjct: 29 EEIRRVIQI----------LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKG 78
Query: 437 TECTFIRVSGSELVQKFIGEGS-RMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGG 495
+++ K+ GE R+ + + + I+F+DE+ ++ + G+
Sbjct: 79 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVD 138
Query: 496 DSEVQRTMLE 505
+ + L
Sbjct: 139 AGNMLKPALA 148
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 30.3 bits (67), Expect = 0.44
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
++L GPPG GK A + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHL 31
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 30.3 bits (67), Expect = 0.49
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 446
P +++ G P GKT +++ + + +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.2 bits (67), Expect = 0.50
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
+ G PG+GK ++ + H E +
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHL 35
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 30.4 bits (67), Expect = 0.53
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
+ + GP G GK L +A+A + +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.5 bits (66), Expect = 0.74
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 13/124 (10%)
Query: 414 KGVLLYGPPGTGK-TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA 472
GVL+ G G GK + V+ + + I + + R
Sbjct: 16 VGVLITGDSGIGKSETALELIKRGHRL----VADDNVEIREISKDELIGR--------AP 63
Query: 473 PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKGVCTEAGMYALR 532
I + EI +G + + G S + L L L+ + K V +
Sbjct: 64 KLIEHLLEIRGLGIINVMTLFGAGSILTEKRLRLNIHLENWHKEKLYDRVGLNEETLRIL 123
Query: 533 ERRV 536
+ +
Sbjct: 124 DTEI 127
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 29.9 bits (66), Expect = 0.76
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
VLL GPPG GK A +A I
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQI 29
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.6 bits (65), Expect = 0.80
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 475
+++ G PG GKT L + + I E + R + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE--VRDPETKKRTGFRIITTEGKKKIFS 60
Query: 476 IFMDEI 481
Sbjct: 61 SKFFTS 66
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.91
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHA 472
K +L G PG+GK+ AR + ++ + Q + R +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHEERDEYKYTKKKEGIV 60
Query: 473 PSIIFM 478
+ F
Sbjct: 61 TGMQFD 66
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.93
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 416 VLLYGPPGTGKTL-LARAVAHHTECTFIRVSGSELVQ 451
L+ P G+GK+ + A A +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATL 47
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 30.1 bits (67), Expect = 0.94
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 412 QPKGVLLY-GPPGTGKTLLARAVAHH---TECTFIRVSGSEL-----VQKFIGE-----G 457
+P G L+ GP G GKT LA+ +A TE IR+ +E V + IG G
Sbjct: 51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 110
Query: 458 SRMVRELFVMAREHAPSIIFMDEID 482
+L R S+I DEI+
Sbjct: 111 YEEGGQLTEAVRRRPYSVILFDEIE 135
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.1 bits (64), Expect = 1.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
++L G PG GK A + I
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHI 29
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.1 bits (65), Expect = 1.2
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 28/112 (25%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAP 473
GVLL G G GK+ A I + V + +
Sbjct: 16 VGVLLTGRSGIGKSECALD--------------------LINKNHLFVGDDAIEIYRLGN 55
Query: 474 SII--------FMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 517
+ EI +G +E G QRT ++L+ L E
Sbjct: 56 RLFGRAQEVAKKFMEIRGLGIINVERFYGLQITKQRTEIQLMVNLLSLEKQT 107
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 29.2 bits (64), Expect = 1.3
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 413 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 442
P V + G PG GK + T +
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 30
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.2 bits (64), Expect = 1.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
+ + G PG GK + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHL 37
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 28.6 bits (63), Expect = 1.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVAHH 436
+ + L G +GK+ LA + H
Sbjct: 23 RGLTIWLTGLSASGKSTLAVELEHQ 47
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 28.8 bits (63), Expect = 2.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 420 GPPGTGKTLLARAVAHHTECTFI 442
GP +GK+ +A+ +A T++
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein
Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 27.0 bits (60), Expect = 2.2
Identities = 7/44 (15%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 134 KIEELQLIVAEKEQNLRRLQ-AQRNELNAKVRMLREELQLLQEQ 176
++EE + ++ + + +R + R + ++R ++E+ L+
Sbjct: 39 QLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 82
Score = 27.0 bits (60), Expect = 2.2
Identities = 7/44 (15%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 257 KIEELQLIVAEKEQNLRRLQ-AQRNELNAKVRMLREELQLLQEQ 299
++EE + ++ + + +R + R + ++R ++E+ L+
Sbjct: 39 QLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 82
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.7 bits (63), Expect = 2.2
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 420 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 479
G PG GK+ A ++V+ + G ++ + M F+
Sbjct: 61 GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 120
Query: 480 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 511
+ S G GG S+ R ++ L
Sbjct: 121 PVPSSGH------LGGASQRARELMLLCEAAG 146
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.7 bits (60), Expect = 2.3
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 410 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 441
+ + +L PG GKT
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR 35
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 28.4 bits (63), Expect = 2.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 416 VLLYGPPGTGKTLLARAVAH 435
+ L+GP TGKT +A A+AH
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.3 bits (62), Expect = 3.1
Identities = 14/134 (10%), Positives = 42/134 (31%), Gaps = 22/134 (16%)
Query: 256 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV 315
+ EEL ++ L + Q + N + + L + L+ G + +V
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR------GNI-------RV 49
Query: 316 LVKVHP---------EGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVS 366
++ P + + +++ + + + + ++ ++
Sbjct: 50 FCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 109
Query: 367 LMMVEKVPDSTYEM 380
MV + S +
Sbjct: 110 FEMVSPLIQSALDG 123
Score = 28.0 bits (61), Expect = 3.7
Identities = 11/112 (9%), Positives = 37/112 (33%), Gaps = 22/112 (19%)
Query: 133 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV 192
+ EEL ++ L + Q + N + + L + L+ G + +V
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR------GNI-------RV 49
Query: 193 LVKVHP---------EGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILP 235
++ P + + +++ + + + + ++ ++
Sbjct: 50 FCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFH 101
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.9 bits (61), Expect = 3.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFI 442
++L G PG GK A + I
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHI 29
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.3 bits (60), Expect = 3.7
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 447
V L G G GKT L R + S +
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPT 67
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.6 bits (61), Expect = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHH 436
GVL+ G G GK+ A +
Sbjct: 15 LGVLITGDSGVGKSETALELVQR 37
Score = 26.8 bits (59), Expect = 5.6
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 563 ALLRPGRIDRKIEFPPPNEEARLDILRIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 622
A+ I + + D L + + + + KI +P G + +
Sbjct: 87 AVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIF-DVPVPKIT--VPVKVGRNLAIII 143
Query: 623 TEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 655
A M + + + FE + +++ + E
Sbjct: 144 EVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEE 176
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.6 bits (60), Expect = 4.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444
K V++ G PG G T ++ + +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 26.7 bits (59), Expect = 5.3
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 147 QNLRRLQAQRNELNAKVRMLREELQLLQEQ 176
Q + L+ +R +++ + +LQ L Q
Sbjct: 2 QECQNLEVERQRRLERIKQKQSQLQELILQ 31
Score = 26.7 bits (59), Expect = 5.3
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 270 QNLRRLQAQRNELNAKVRMLREELQLLQEQ 299
Q + L+ +R +++ + +LQ L Q
Sbjct: 2 QECQNLEVERQRRLERIKQKQSQLQELILQ 31
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 25.6 bits (56), Expect = 5.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 135 IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR 167
I+ ++ +Q++ L+ Q L +VR L
Sbjct: 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
Score = 25.6 bits (56), Expect = 5.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 258 IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR 290
I+ ++ +Q++ L+ Q L +VR L
Sbjct: 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.0 bits (59), Expect = 5.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 412 QPKGVLLYGPPGTGKTLLARAVAHH 436
+ + VL+ G G GKT + +
Sbjct: 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 6.3
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 387 QIKEIKEVIELPVKHPELFDALGIAQPK-----GVLLYGPPGTGKTLLARAVA 434
+I ++ + + + G+ P+ +L+ G GTGK++L R +A
Sbjct: 19 RIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA 71
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 26.9 bits (59), Expect = 7.6
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVS-GSELVQKFIGEGSRMVREL 464
L+ PP GKT+L + +A L+ + E + M R +
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 95
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.8 bits (58), Expect = 7.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 410 IAQPKGVLLYGPPGTGKTL 428
+ + ++ PG GKT
Sbjct: 6 FRKKRLTIMDLHPGAGKTK 24
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.5 bits (57), Expect = 7.8
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 414 KGVLLYGPPGTGKTLLARAVAHHTECTFIRV 444
K ++ G PG GK+ + V + I
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 25.3 bits (55), Expect = 8.4
Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 99 GEMDVDEAYTYEVERQRT--VDEAIKSSEGFKPYYVTKIEELQLIVAEKEQN-LRRLQAQ 155
G M+V +ERQR + + + P + ++++ +K + +QA+
Sbjct: 1 GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60
Query: 156 RNELNAKVRMLREELQLLQEQ 176
+L ++ +LR+ + L+ +
Sbjct: 61 EQKLISEEDLLRKRREQLKHK 81
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 27.0 bits (58), Expect = 8.5
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 416 VLLYGPPGTGKT-LLARAVAH 435
L+ G+GKT ++ +AH
Sbjct: 17 CLVLAGAGSGKTRVITNKIAH 37
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.6 bits (57), Expect = 8.8
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 384 LDNQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 436
L ++I + K ++ + + LGI G +GKT LA ++
Sbjct: 3 LRDRIDFLCKTILAIKTAGRLV---LGID--------GLSRSGKTTLANQLSQT 45
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 26.6 bits (59), Expect = 8.9
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 465
+ L+G G GKT+L + ++ + G V +GE +R +L+
Sbjct: 71 IGLFGGAGVGKTVLIMELINNV----AKAHGGYSVFAGVGERTREGNDLY 116
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 270
Score = 26.7 bits (59), Expect = 9.4
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 129 PYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM 165
Y T I + + E+ L L+ + N L+ ++ M
Sbjct: 226 DDYQTPITNSVTVRQDLERQLGELREEFNALSQEIAM 262
Score = 26.7 bits (59), Expect = 9.4
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 252 PYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM 288
Y T I + + E+ L L+ + N L+ ++ M
Sbjct: 226 DDYQTPITNSVTVRQDLERQLGELREEFNALSQEIAM 262
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 9.5
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 416 VLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMAREHA 472
+ GP G GKT R +A + + + R++ ++ + A
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.369
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,456,118
Number of extensions: 123096
Number of successful extensions: 632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 153
Length of query: 665
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 574
Effective length of database: 1,158,166
Effective search space: 664787284
Effective search space used: 664787284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)