BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15938
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T17|A Chain A, Solution Structure Of The 18 Kda Protein Cc1736 From
           Caulobacter Crescentus: The Northeast Structural
           Genomics Consortium Target Ccr19
          Length = 148

 Score = 34.7 bits (78), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 51  KLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLT-------IGFPPIVE 103
           K++ Y+ +Q++E+V DV+ Y  FVP+    + T+    ++ G+++       +GF  + E
Sbjct: 8   KVLPYTPDQLFELVGDVDAYPKFVPWI-TGMRTWNG--RVDGAVSTVDAEAQVGFSFLRE 64

Query: 104 SYTSNVTLDR-PKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFF 158
            + + V  D+  + I  +   G  F  L   WRF    +      VI+F  + A  
Sbjct: 65  KFATRVRRDKDARSIDVSLLYGP-FKRLNNGWRFMPEGDATRVEFVIEFAFKSALL 119


>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
           Sapiens
 pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
 pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
           Pyrophosphorylase Of Homo Sapiens
          Length = 528

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 3   FAPVKTTSSTLL-KKCIPSYNAIPLIYTQQKSF-----FNIADTFSKKKEYLGR 50
           F PVKTTS  LL    + S NA  L  ++++ F       +  +F+K ++YL R
Sbjct: 412 FLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRR 465


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,953,657
Number of Sequences: 62578
Number of extensions: 236121
Number of successful extensions: 432
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)