BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15938
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q567E6|CQ10B_DANRE Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Danio
rerio GN=coq10b PE=2 SV=1
Length = 238
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 13/178 (7%)
Query: 8 TTSSTLLKKCIPSYNAIP--LIYTQQKSFFNIADTFSKKKEYLGRKLVGYSREQMYEVVS 65
++ L+ + P + A+ + +SFFN A++ +K+KEY R+++GYS ++MYEVV+
Sbjct: 37 SSCGILMTRAPPLFRAVSSRAVVAPARSFFNFAESSNKRKEYSERRIIGYSMQEMYEVVA 96
Query: 66 DVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGK 125
VE+Y FVP+CKKS V ++ LT+GFPP+VE+YTS V+ RP L+KA+C DGK
Sbjct: 97 KVEDYLLFVPWCKKSDVIFRRSGFCKAKLTVGFPPVVENYTSLVSTVRPHLVKASCSDGK 156
Query: 126 LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAE 183
LF+HL T+WRF GL P++C +DF + F R LL S Q+ FF E
Sbjct: 157 LFNHLETVWRFSPGLPGYPRTCTLDFAISFEF----------RSLLHS-QLATVFFDE 203
>sp|Q9H8M1|CQ10B_HUMAN Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Homo
sapiens GN=COQ10B PE=2 SV=1
Length = 238
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 17/186 (9%)
Query: 4 APVK-----TTSSTLLKKCIPSYNAIPLIYTQQKSFFNI-ADTFSKKKEYLGRKLVGYSR 57
APV+ + L+ + +P + +I ++FF I A +K+KEY R+++GYS
Sbjct: 29 APVRNGRYLASCGILMSRTLPLHTSILPKEICARTFFKITAPLINKRKEYSERRILGYSM 88
Query: 58 EQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLI 117
++MY+VVS VE+YK+FVP+CKKS V K L IGFPP++E YTS VTL +P L+
Sbjct: 89 QEMYDVVSGVEDYKHFVPWCKKSDVISKRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLV 148
Query: 118 KANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQME 177
KA+C DG+LF+HL T+WRF GL P++C +DF + F R LL S Q+
Sbjct: 149 KASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEF----------RSLLHS-QLA 197
Query: 178 KAFFAE 183
FF E
Sbjct: 198 TLFFDE 203
>sp|Q5RD79|CQ10B_PONAB Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Pongo
abelii GN=COQ10B PE=2 SV=1
Length = 238
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 17/186 (9%)
Query: 4 APVK-----TTSSTLLKKCIPSYNAIPLIYTQQKSFFNI-ADTFSKKKEYLGRKLVGYSR 57
APV+ + L+ + +P + +I ++FF I A +K+KEY R+++GYS
Sbjct: 29 APVRNGRYLASCGILMSRTLPLHTSILPKEICARTFFKITAPLINKRKEYSERRILGYSM 88
Query: 58 EQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLI 117
++MY+VVS VE+YK+FVP+CKKS V K L IGFPP++E YTS VTL +P L+
Sbjct: 89 QEMYDVVSGVEDYKHFVPWCKKSDVISKRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLV 148
Query: 118 KANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQME 177
KA+C DG+LF+HL T+WRF GL P++C +DF + F R LL S Q+
Sbjct: 149 KASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEF----------RSLLHS-QLA 197
Query: 178 KAFFAE 183
FF E
Sbjct: 198 TLFFDE 203
>sp|Q8MLL3|COQ10_DROME Coenzyme Q-binding protein COQ10, mitochondrial OS=Drosophila
melanogaster GN=Coq10 PE=2 SV=1
Length = 242
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 101/187 (54%), Gaps = 1/187 (0%)
Query: 13 LLKKCIPSYNAIPLIYTQQKSFFNIADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKN 72
LL C + + +S+ D K + Y ++LVGYS + MY VVSDV NY
Sbjct: 51 LLLSCCSGGHQRSFSSSTHRSYITFNDFRKKHRWYTKKELVGYSMQDMYSVVSDVSNYHK 110
Query: 73 FVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVT 132
FVP+ K+S V + + L +GFPP+ E+YTS VTL P L+K+ C DG+LF++L+
Sbjct: 111 FVPYVKRSDVHSRGSEGFKADLIVGFPPLNEAYTSQVTLVPPSLVKSECHDGRLFNYLLN 170
Query: 133 MWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVL-LTSMQMEKAFFAEAEMRYGKP 191
W F GL+D+P SCV+DF + F + N L QME AF E R G P
Sbjct: 171 EWSFKPGLKDIPNSCVLDFKVSFEFKSLLHSNVANIFFDLICDQMENAFIQEVRRRSGPP 230
Query: 192 TIPIHRL 198
+I H L
Sbjct: 231 SIRSHVL 237
>sp|Q6DFA6|CQ10A_XENLA Coenzyme Q-binding protein COQ10 homolog A, mitochondrial
OS=Xenopus laevis GN=coq10b-a PE=2 SV=1
Length = 247
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 104/180 (57%), Gaps = 23/180 (12%)
Query: 30 QQKSFFNIADTFS-KKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK 88
Q +SF + + K+KEY R+++GYS ++MYEVVS+VE YK FVP+CKKS V K
Sbjct: 69 QCRSFLSFTGPLTNKRKEYSERRIMGYSMQEMYEVVSNVEEYKLFVPWCKKSTVISKRTG 128
Query: 89 KIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCV 148
L +GFPPI+E YTS +TL RP L+KA C DG+LF+HL ++WRF G+ P++C
Sbjct: 129 YAKAQLEVGFPPILERYTSILTLVRPHLVKAVCTDGRLFNHLESIWRFSPGIPGYPRTCT 188
Query: 149 IDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEA--------EMRYGK---PTIPIHR 197
+DF + F R LL S Q+ FF E E R GK P PI R
Sbjct: 189 VDFSISFEF----------RSLLHS-QLATVFFDEVVKQMVAAFERRAGKIYGPETPIPR 237
>sp|Q3THF9|CQ10B_MOUSE Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Mus
musculus GN=Coq10b PE=2 SV=1
Length = 240
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 12/172 (6%)
Query: 13 LLKKCIPSYNAIPLIYTQQKSFFNI-ADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYK 71
L+ + +P A+ ++FF I A +K+KEY R+++GYS ++MY+VVS +E+Y+
Sbjct: 45 LINRTLPPCAAVLPKEICARTFFRISAPLVNKRKEYSERRILGYSMQEMYDVVSGMEDYQ 104
Query: 72 NFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLV 131
+FVP+CKKS + + L +GFPP++E YTS VTL +P L+KA+C DGKLF+HL
Sbjct: 105 HFVPWCKKSDIISRRSGYCKTRLEVGFPPVLERYTSIVTLVKPHLVKASCTDGKLFNHLE 164
Query: 132 TMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAE 183
T+WRF GL P++C +DF + F R LL S Q+ FF E
Sbjct: 165 TIWRFSPGLPGYPRTCTLDFSISFEF----------RSLLHS-QLATLFFDE 205
>sp|Q5I0I9|CQ10B_RAT Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Rattus
norvegicus GN=Coq10b PE=2 SV=2
Length = 240
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 12/153 (7%)
Query: 32 KSFFNIADTF-SKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKI 90
++FF I +K+KEY R+++GYS ++MY+VVS +E+YK+FVP+CKKS + +
Sbjct: 64 RTFFRITTPLVNKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDILSRRSGYC 123
Query: 91 IGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVID 150
L IGFPP++E YTS VTL +P L+KA+C DGKLF+HL T+WRF GL P++C +D
Sbjct: 124 KTRLEIGFPPVLERYTSIVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLD 183
Query: 151 FYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAE 183
F + F R LL S Q+ FF E
Sbjct: 184 FSISFEF----------RSLLHS-QLATLFFDE 205
>sp|Q96MF6|CQ10A_HUMAN Coenzyme Q-binding protein COQ10 homolog A, mitochondrial OS=Homo
sapiens GN=COQ10A PE=2 SV=2
Length = 247
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 12/153 (7%)
Query: 32 KSFFNIADTFS-KKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKI 90
+SF A F+ K+K Y R+++GYS ++MYEVVS+V+ Y+ FVP+CKKS+V + +
Sbjct: 71 RSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHL 130
Query: 91 IGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVID 150
L +GFPP++E YTS V++ +P ++KA C DGKLF+HL T+WRF G+ P++C +D
Sbjct: 131 KAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVD 190
Query: 151 FYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAE 183
F + F R LL S Q+ FF E
Sbjct: 191 FSISFEF----------RSLLHS-QLATMFFDE 212
>sp|Q6GNP0|CQ10B_XENLA Coenzyme Q-binding protein COQ10 homolog B, mitochondrial
OS=Xenopus laevis GN=coq10b PE=2 SV=1
Length = 244
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 25/182 (13%)
Query: 28 YTQQKSFFNIADTF--SKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYK 85
+ Q ++F N+A SK+ EY K++G+S EQMY++V+DV+NYK FVP+C +S V
Sbjct: 64 HIQGRTFLNLAAPLLGSKRIEYSESKVLGFSIEQMYDIVADVQNYKIFVPWCNRSKVLSC 123
Query: 86 SEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQ 145
+ L +GFPP+VE Y S +++ ++A C DGKLF+HL T+WRF GL P
Sbjct: 124 KKGVTRAELEVGFPPVVERYVSEISVIPLHQVRAVCCDGKLFNHLETVWRFSPGLSGRPD 183
Query: 146 SCVIDF------------YMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAEMRYGKPTI 193
+C +DF ++ FF E QM AF +A YG+ +
Sbjct: 184 TCTLDFCVSFEFKSLLHSHLASVFFDE-----------VVKQMVCAFEKQAGRIYGRQEV 232
Query: 194 PI 195
P+
Sbjct: 233 PL 234
>sp|Q6PBN4|CQ10X_DANRE Coenzyme Q-binding protein COQ10 homolog, mitochondrial OS=Danio
rerio GN=zgc:73324 PE=2 SV=2
Length = 233
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 32 KSFFNI-ADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKI 90
+SF N+ A ++ EY + + YS EQMY+VV++VE Y+ FVP+CKKS VT +
Sbjct: 62 RSFINLTAPLIMRRMEYSESRSINYSPEQMYDVVANVEQYQQFVPWCKKSKVTRGRNGDM 121
Query: 91 IGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVID 150
L IGFPPIVE YTS VT+ ++A C DG LF+HL T+WRF G QSC ++
Sbjct: 122 RAQLEIGFPPIVERYTSEVTVIPNHQVRAVCTDGSLFNHLETLWRFTPGA--AGQSCNVE 179
Query: 151 FYM 153
F++
Sbjct: 180 FFV 182
>sp|P0AGL6|RATA_SHIFL Ribosome association toxin RatA OS=Shigella flexneri GN=ratA PE=3
SV=1
Length = 158
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 52 LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTL 111
LV YS EQMY++V+DV++Y F+P C S + + ++ ++ + I +++T+ L
Sbjct: 22 LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQL 81
Query: 112 DRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVL 170
+ I N DG F L+ W+F ++ +C I+F+++ F + E+ +G
Sbjct: 82 TSNQSILMNLVDGP-FKKLIGGWKFTPLSQE---ACRIEFHLDFEFTNKLIELAFGRVFK 137
Query: 171 LTSMQMEKAFFAEAEMRY 188
+ M +AF A+ Y
Sbjct: 138 ELAANMVQAFTVRAKEVY 155
>sp|P0AGL5|RATA_ECOLI Ribosome association toxin RatA OS=Escherichia coli (strain K12)
GN=ratA PE=1 SV=1
Length = 158
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 52 LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTL 111
LV YS EQMY++V+DV++Y F+P C S + + ++ ++ + I +++T+ L
Sbjct: 22 LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQL 81
Query: 112 DRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVL 170
+ I N DG F L+ W+F ++ +C I+F+++ F + E+ +G
Sbjct: 82 TSNQSILMNLVDGP-FKKLIGGWKFTPLSQE---ACRIEFHLDFEFTNKLIELAFGRVFK 137
Query: 171 LTSMQMEKAFFAEAEMRY 188
+ M +AF A+ Y
Sbjct: 138 ELAANMVQAFTVRAKEVY 155
>sp|Q556V1|COQ10_DICDI Coenzyme Q-binding protein COQ10, mitochondrial OS=Dictyostelium
discoideum GN=coq10-1 PE=3 SV=1
Length = 205
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 51 KLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKK--IIGSLTIGFPPIVESYTSN 108
K + Y Q+Y V+ VE+YK F+PFC S + + + K L +G I ESY S
Sbjct: 59 KELKYPVNQVYSVIIKVEDYKEFLPFCLNSTILKREKDKNHFEAELEVGQGTIKESYVSK 118
Query: 109 VTLDRPKLIKANCFDGKLFDHLVTMWRFHRG 139
V K I++ D LF L+ W F +G
Sbjct: 119 VVYKENKFIESTATDTPLFHKLINTWSFKQG 149
>sp|Q8FEY4|PAST_ECOL6 Persistence and stress-resistance toxin PasT OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pasT PE=1
SV=1
Length = 158
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 52 LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTL 111
LV YS EQMY++V+DV++Y F+P C S + + ++ ++ + I +++T+ L
Sbjct: 22 LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQL 81
Query: 112 DRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVL 170
+ I + DG F L+ W+F +D +C I+F+++ F + E+ +G
Sbjct: 82 TSNQSILMSLVDGP-FKKLIGGWKFTPLSQD---ACRIEFHLDFEFTNKLIELAFGRVFK 137
Query: 171 LTSMQMEKAFFAEAEMRY 188
+ M +AF A+ Y
Sbjct: 138 ELAANMVQAFTVRAKEVY 155
>sp|Q08058|COQ10_YEAST Coenzyme Q-binding protein COQ10, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ10 PE=1
SV=1
Length = 207
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 28 YTQQKSFFNIADTFS--KKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYK 85
Y +++FF ++ T +++ Y+ RK + +Y VS+V YK F+P+C S V +
Sbjct: 25 YPLKRNFFGLSGTNHTIREQRYVLRKAINAPPSTVYAAVSEVAQYKEFIPYCVDSFVDKR 84
Query: 86 S---EKKIIGSLTIGFPPIVESYTSNVTL---DRPKLIKANCFDGKLFDHLVTMW 134
+ K +I L +GF E + NVT D + A LF L++ W
Sbjct: 85 NPVDNKPLIAGLRVGFKQYDEEFICNVTCKDTDHTYTVVAETISHNLFHLLISKW 139
>sp|P0C6Q0|RATA_VIBCH Ribosome association toxin RatA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ratA PE=3
SV=1
Length = 144
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 52 LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTL 111
LV +S EQM+ +V+DV Y F+P C S V +SE ++ S+ + I +++T++ L
Sbjct: 9 LVSFSAEQMFHLVNDVARYPEFLPGCSGSCVLEQSEAHMVASVDVSKAGISKTFTTSNQL 68
Query: 112 DRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEA-EMRYGNRVL 170
I + DG F L W F L++ +C ++ +E F ++ E+ +G
Sbjct: 69 TPGVSIAMSLVDGP-FKTLRGGW-FFTPLDEA--ACKVELRLEFEFSSKMIELAFGKIFN 124
Query: 171 LTSMQMEKAFFAEAEMRYGK 190
+ M AF A+ YG+
Sbjct: 125 ELTSNMVNAFTRRAKQVYGE 144
>sp|A5F376|RATA_VIBC3 Ribosome association toxin RatA OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=ratA PE=3 SV=2
Length = 144
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 52 LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTL 111
LV +S EQM+ +V+DV Y F+P C S V +SE ++ S+ + I +++T++ L
Sbjct: 9 LVSFSAEQMFHLVNDVARYPEFLPGCSGSCVLEQSEAHMVASVDVSKAGISKTFTTSNQL 68
Query: 112 DRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEA-EMRYGNRVL 170
I + DG F L W F L++ +C ++ +E F ++ E+ +G
Sbjct: 69 TPGVSIAMSLVDGP-FKTLRGGW-FFTPLDEA--ACKVELRLEFEFSSKMIELAFGKIFN 124
Query: 171 LTSMQMEKAFFAEAEMRYGK 190
+ M AF A+ YG+
Sbjct: 125 ELTSNMVNAFTRRAKQVYGE 144
>sp|Q9USM9|COQ10_SCHPO Coenzyme Q-binding protein coq10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coq10 PE=3 SV=1
Length = 164
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 40 TFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTY---KSEKKIIGSLTI 96
T + + Y +L+ Y ++ ++S+V Y+ FVPFC+KS VT K+ LT+
Sbjct: 6 TLRRLECYRASRLMPYKPSFLFSLISNVNEYERFVPFCQKSKVTEYDPKTGYPTKADLTV 65
Query: 97 GFPPIVESYTSNVTLDRPKL-IKANCFDGKLFDHLVTMW 134
GF + E++ S V D L + A+ +LF L T W
Sbjct: 66 GFKGLCETFDSKVVCDPVALTVLADASHHRLFRRLKTHW 104
>sp|Q9LM64|FB16_ARATH Putative F-box protein At1g21990 OS=Arabidopsis thaliana
GN=At1g21990 PE=4 SV=1
Length = 465
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 70 YKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRP----KLIKANCFDGK 125
++N +P K +T E G ++GFP VE + LDRP K + NC
Sbjct: 41 WRNLLPLVDKLELT---EDHPSGRCSLGFPDFVEKTLA--LLDRPCSVIKKVHLNC---- 91
Query: 126 LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAE 185
DHL RF+ + V + V+DF++E + E + L + + A + E E
Sbjct: 92 --DHLHGESRFYSWIRTVLERGVLDFHLESSRMYRVETEFFTSNTLVELTISGALYPEGE 149
Query: 186 MRYG 189
+ G
Sbjct: 150 LPPG 153
>sp|O68560|RATA_PSEAE Ribosome association toxin RatA OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ratA
PE=3 SV=1
Length = 144
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 52 LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTL 111
L+ Y ++++V+DV+ Y F+P+C S V +SE + LT+ + + +T+ L
Sbjct: 10 LLPYPARALFDLVNDVKRYPEFLPWCSASQVLEESESLMRAELTVAKGSLSQRFTTRNVL 69
Query: 112 DRPKLIKANCFDGKLFDHLVTMWRF 136
I+ N +G F L +W+F
Sbjct: 70 VPGASIEMNLENGP-FTELHGVWQF 93
>sp|Q9ZDZ7|RATA_RICPR Ribosome association toxin RatA OS=Rickettsia prowazekii (strain
Madrid E) GN=ratA PE=3 SV=1
Length = 146
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 51 KLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNV- 109
K++ Y ++++++V D+++Y F+P+C + + ++ +++I L I + E Y S V
Sbjct: 8 KILPYKPKKLFDLVWDIKSYPQFLPWCAAARIISENNQEVISELVIQLKGLSEKYNSRVI 67
Query: 110 ---TLDRPKLIKANCFDGKLFDHLVTMWRF 136
T + LI G F++L + W+F
Sbjct: 68 NTITDNGIYLIDTVAISGP-FEYLKSTWQF 96
>sp|Q75CC1|COQ10_ASHGO Coenzyme Q-binding protein COQ10, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COQ10 PE=3 SV=1
Length = 204
Score = 37.4 bits (85), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 31 QKSFFNIADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKI 90
+++F +K++ Y+ +++ +Y VS+V YK F+P+C S V +
Sbjct: 26 RRTFLGFTGGDTKEQRYILKRVFNAPLHYVYPAVSEVSLYKLFIPYCTDSFVNKRRPGDN 85
Query: 91 I---GSLTIGFPPIVESYTSNVTL----DRPKLIKANCFDGKLFDHLVTMW 134
+ L +GF E++ V + + A LF+ L T W
Sbjct: 86 MPTEAGLRVGFQQYDETFVCRVDCTTLPGNQRSVVAESLAHHLFETLHTQW 136
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 25 PLIYTQQKSFFNIADTFSK-----KKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKK 79
P I ++ADTFS+ YLG ++ Y YE+ S+ + F+P+ +
Sbjct: 1674 PEIELLHADLRSVADTFSELYWQAPPSYLGDRVSSYGGTLHYELHSETQRGDIFIPYESR 1733
Query: 80 SVVTYKSEKKIIGSLTIGFPP 100
V + + I L + +PP
Sbjct: 1734 PDVVLQGNQMSIAFLELAYPP 1754
>sp|Q4A734|GCP_MYCS5 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Mycoplasma synoviae (strain 53) GN=gcp PE=3 SV=2
Length = 307
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 56 SREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPK 115
SRE + + + F+ K + Y SE +IG L +GF + + ++ L++P
Sbjct: 47 SREHVKNIAILQNFLQEFIDLNKIDHIAYTSEPGLIGCLQVGF---LFASALSIALNKP- 102
Query: 116 LIKANCFDGKLF 127
LIK N DG F
Sbjct: 103 LIKINHLDGHFF 114
>sp|Q5YJU6|MATK_LUPAG Maturase K OS=Lupinus argenteus GN=matK PE=3 SV=1
Length = 504
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 119 ANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAF-----FAEAEMRYGNRVLLTS 173
A+ K ++L+ +W++H + P++ I+ + E +F F+ + NR + S
Sbjct: 288 ASLLMNKWKNYLIRLWQYHFDVWSQPRTIQINQFSEGSFRLLGYFSNVRL---NRSAVRS 344
Query: 174 MQMEKAFFAEAEMRYGKPTIPI 195
+E +F E M+ + +PI
Sbjct: 345 QMLENSFLIEIVMKKLETIVPI 366
>sp|Q5YJV9|MATK_LUPCO Maturase K OS=Lupinus cosentinii GN=matK PE=3 SV=1
Length = 508
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 119 ANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAF-----FAEAEMRYGNRVLLTS 173
A+ K ++L+ +W++H + P++ I+ + E +F F+ + NR + S
Sbjct: 292 ASLLMNKWKNYLIRLWQYHFDVWSQPRTIQINQFSEGSFHLLGYFSNVRL---NRSAVRS 348
Query: 174 MQMEKAFFAEAEMRYGKPTIPI 195
+E +F E M+ + +PI
Sbjct: 349 QMLENSFLIEIVMKKLETIVPI 370
>sp|B5FFS9|HLDD_VIBFM ADP-L-glycero-D-manno-heptose-6-epimerase OS=Vibrio fischeri
(strain MJ11) GN=hldD PE=3 SV=1
Length = 313
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 10 SSTLLKKCIPSYNAIPLIYTQQKSFFNIADTFSKKKEYLGR-KLVGYSREQ 59
S LL CI IP +Y + + DTF +++EY G + GYS++Q
Sbjct: 97 SKELLHFCIER--EIPFLYASSAATYGETDTFIEEREYEGALNVYGYSKQQ 145
>sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630
OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2
Length = 415
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 40/157 (25%)
Query: 23 AIPLIYTQQKSFFNIADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVV 82
A+ L Y +Q+ F+ + + S VG R + ++ + F KS+
Sbjct: 227 AVVLAYLKQRKFYRLREFLSD---------VGLGRRNLGNMLWNSVLLSYAADFKMKSL- 276
Query: 83 TYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLED 142
+++ IG L GF P + ++ I+A F + W H LE
Sbjct: 277 ----QREFIGMLDAGFSPDLTTFN----------IRALAFS-----RMALFWDLHLTLEH 317
Query: 143 ------VPQ----SCVIDFYMEKAFFAEAEMRYGNRV 169
VP CV+D YM+K E Y NR+
Sbjct: 318 MRRLNIVPDLVTFGCVVDAYMDKRLARNLEFVY-NRM 353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,159,471
Number of Sequences: 539616
Number of extensions: 3005606
Number of successful extensions: 5868
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5841
Number of HSP's gapped (non-prelim): 32
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)