Query psy15938
Match_columns 209
No_of_seqs 133 out of 819
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 16:55:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2867 Oligoketide cyclase/li 100.0 3.2E-40 7E-45 260.3 13.5 143 44-190 1-145 (146)
2 PRK10724 hypothetical protein; 100.0 1.3E-37 2.8E-42 251.7 18.9 150 37-190 7-157 (158)
3 KOG3177|consensus 100.0 1.6E-35 3.5E-40 244.6 9.4 158 30-192 52-216 (227)
4 cd07813 COQ10p_like Coenzyme Q 100.0 7.3E-29 1.6E-33 193.2 16.5 137 47-187 1-138 (138)
5 cd08860 TcmN_ARO-CYC_like N-te 99.9 1E-24 2.3E-29 173.9 17.4 136 46-186 2-144 (146)
6 PF03364 Polyketide_cyc: Polyk 99.9 2.8E-23 6E-28 159.5 14.3 128 53-181 1-130 (130)
7 cd08866 SRPBCC_11 Ligand-bindi 99.9 1.8E-21 3.8E-26 151.7 17.1 136 48-186 2-144 (144)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.9 1.1E-20 2.3E-25 146.9 16.9 135 47-186 1-142 (142)
9 cd07819 SRPBCC_2 Ligand-bindin 99.9 2.6E-20 5.7E-25 143.3 17.3 136 45-184 2-140 (140)
10 cd07817 SRPBCC_8 Ligand-bindin 99.8 2.7E-17 6E-22 126.5 14.9 130 47-185 2-138 (139)
11 cd05018 CoxG Carbon monoxide d 99.8 9E-17 2E-21 124.1 16.7 136 46-187 2-142 (144)
12 cd08865 SRPBCC_10 Ligand-bindi 99.7 1.2E-15 2.7E-20 116.4 15.7 133 48-186 2-140 (140)
13 cd07818 SRPBCC_1 Ligand-bindin 99.7 9.8E-16 2.1E-20 120.2 15.0 135 46-185 3-149 (150)
14 cd07824 SRPBCC_6 Ligand-bindin 99.7 8.7E-16 1.9E-20 121.0 14.7 129 47-182 3-140 (146)
15 cd08876 START_1 Uncharacterize 99.7 3.5E-15 7.5E-20 122.8 17.2 148 35-185 31-195 (195)
16 cd07821 PYR_PYL_RCAR_like Pyra 99.6 1.3E-14 2.9E-19 110.8 15.2 133 46-184 2-139 (140)
17 PF10604 Polyketide_cyc2: Poly 99.6 4.1E-13 8.9E-18 102.6 19.7 134 44-185 1-139 (139)
18 cd07820 SRPBCC_3 Ligand-bindin 99.6 1.5E-13 3.4E-18 107.1 15.5 116 47-167 1-122 (137)
19 cd07823 SRPBCC_5 Ligand-bindin 99.5 3.5E-13 7.5E-18 106.2 14.8 133 48-186 2-142 (146)
20 cd08862 SRPBCC_Smu440-like Lig 99.5 3.8E-12 8.3E-17 97.6 16.1 133 46-185 2-137 (138)
21 cd07812 SRPBCC START/RHO_alpha 99.5 3.8E-12 8.2E-17 94.3 15.3 132 48-182 2-139 (141)
22 cd07822 SRPBCC_4 Ligand-bindin 99.4 2.6E-11 5.7E-16 92.5 16.0 136 46-185 1-141 (141)
23 cd07814 SRPBCC_CalC_Aha1-like 99.3 6.5E-11 1.4E-15 90.6 14.8 134 47-185 2-138 (139)
24 COG5637 Predicted integral mem 99.2 4.3E-10 9.2E-15 92.2 12.6 137 42-186 67-210 (217)
25 PF06240 COXG: Carbon monoxide 99.1 6E-09 1.3E-13 82.1 17.2 132 50-187 2-138 (140)
26 cd07825 SRPBCC_7 Ligand-bindin 99.1 4.7E-09 1E-13 81.4 14.8 108 46-158 1-115 (144)
27 cd07816 Bet_v1-like Ligand-bin 99.0 1.4E-07 3E-12 75.1 18.0 112 46-160 2-122 (148)
28 cd08877 START_2 Uncharacterize 98.9 5.2E-08 1.1E-12 81.9 14.8 143 41-186 42-214 (215)
29 cd08906 START_STARD3-like Chol 98.9 1.6E-07 3.4E-12 79.2 15.9 141 41-186 46-208 (209)
30 COG3427 Carbon monoxide dehydr 98.8 2.7E-07 5.8E-12 73.7 15.5 134 46-186 2-141 (146)
31 cd08905 START_STARD1-like Chol 98.8 1.1E-07 2.3E-12 80.1 13.8 140 45-185 49-207 (209)
32 cd08868 START_STARD1_3_like Ch 98.7 3E-06 6.5E-11 70.9 17.9 142 45-187 48-208 (208)
33 cd08874 START_STARD9-like C-te 98.6 2.5E-06 5.5E-11 71.9 16.1 132 43-174 43-194 (205)
34 cd08873 START_STARD14_15-like 98.6 1.6E-06 3.4E-11 74.6 14.8 117 41-160 73-207 (235)
35 cd08870 START_STARD2_7-like Li 98.6 3.8E-06 8.2E-11 70.5 16.8 144 41-185 46-207 (209)
36 cd08871 START_STARD10-like Lip 98.6 8.8E-06 1.9E-10 68.7 17.7 150 35-187 37-203 (222)
37 cd08911 START_STARD7-like Lipi 98.6 8.1E-06 1.8E-10 68.5 17.0 145 41-185 41-205 (207)
38 cd00177 START Lipid-binding ST 98.5 2.3E-05 5.1E-10 62.9 18.7 139 41-186 35-190 (193)
39 cd08893 SRPBCC_CalC_Aha1-like_ 98.5 4.8E-06 1E-10 63.4 12.9 127 47-185 2-135 (136)
40 cd08914 START_STARD15-like Lip 98.5 5.2E-06 1.1E-10 71.4 13.5 116 41-160 74-208 (236)
41 cd08913 START_STARD14-like Lip 98.4 7.6E-06 1.6E-10 70.6 13.7 114 42-158 78-210 (240)
42 cd08899 SRPBCC_CalC_Aha1-like_ 98.4 9.2E-06 2E-10 64.9 12.5 127 44-186 10-137 (157)
43 cd08903 START_STARD5-like Lipi 98.4 2.5E-05 5.5E-10 65.6 15.5 139 45-186 46-207 (208)
44 smart00234 START in StAR and p 98.3 9.3E-05 2E-09 61.0 17.8 143 41-186 41-202 (206)
45 cd08869 START_RhoGAP C-termina 98.2 0.00016 3.5E-09 60.2 16.9 135 41-181 40-191 (197)
46 cd08867 START_STARD4_5_6-like 98.2 0.00025 5.4E-09 59.1 17.3 138 45-183 46-204 (206)
47 cd08908 START_STARD12-like C-t 98.2 9.6E-05 2.1E-09 62.3 14.7 117 39-160 46-177 (204)
48 cd08898 SRPBCC_CalC_Aha1-like_ 98.2 5.1E-05 1.1E-09 58.4 11.9 100 46-154 2-111 (145)
49 cd08910 START_STARD2-like Lipi 98.1 0.00012 2.5E-09 61.6 14.5 142 39-185 43-205 (207)
50 cd08872 START_STARD11-like Cer 98.1 0.00015 3.2E-09 62.3 14.5 142 44-189 51-229 (235)
51 cd08894 SRPBCC_CalC_Aha1-like_ 98.1 0.00032 6.9E-09 54.5 14.7 102 47-155 2-108 (139)
52 cd08900 SRPBCC_CalC_Aha1-like_ 98.0 0.001 2.2E-08 51.9 16.2 105 47-156 2-115 (143)
53 PF01852 START: START domain; 98.0 0.0055 1.2E-07 50.2 21.1 149 33-186 33-202 (206)
54 cd08897 SRPBCC_CalC_Aha1-like_ 97.9 0.00092 2E-08 51.5 14.2 97 47-152 2-104 (133)
55 cd08896 SRPBCC_CalC_Aha1-like_ 97.8 0.00095 2.1E-08 52.3 13.9 103 47-154 2-114 (146)
56 PF00407 Bet_v_1: Pathogenesis 97.8 0.0023 5E-08 51.4 16.4 136 45-184 4-148 (151)
57 cd08895 SRPBCC_CalC_Aha1-like_ 97.8 0.0018 3.8E-08 50.7 14.3 104 47-154 2-118 (146)
58 cd07826 SRPBCC_CalC_Aha1-like_ 97.6 0.0031 6.7E-08 49.3 13.8 104 47-155 2-111 (142)
59 PF08327 AHSA1: Activator of H 97.6 0.0028 6.2E-08 47.3 12.4 119 54-184 1-123 (124)
60 cd08909 START_STARD13-like C-t 97.4 0.019 4.2E-07 48.4 16.4 117 39-160 46-178 (205)
61 cd08901 SRPBCC_CalC_Aha1-like_ 97.3 0.0083 1.8E-07 46.4 12.0 98 47-154 2-99 (136)
62 cd08891 SRPBCC_CalC Ligand-bin 97.2 0.015 3.2E-07 45.6 13.3 101 47-155 2-115 (149)
63 cd08904 START_STARD6-like Lipi 97.2 0.042 9.2E-07 46.3 16.0 138 43-185 44-200 (204)
64 PF10698 DUF2505: Protein of u 96.8 0.12 2.6E-06 41.4 15.0 131 47-185 1-153 (159)
65 cd08892 SRPBCC_Aha1 Putative h 96.6 0.083 1.8E-06 40.3 12.4 95 47-154 2-98 (126)
66 PF08982 DUF1857: Domain of un 96.5 0.11 2.5E-06 41.7 13.0 68 54-125 17-85 (149)
67 COG3832 Uncharacterized conser 96.4 0.082 1.8E-06 42.0 11.6 96 44-141 7-106 (149)
68 COG4276 Uncharacterized conser 95.9 0.47 1E-05 37.8 13.2 115 44-168 1-130 (153)
69 cd08863 SRPBCC_DUF1857 DUF1857 95.9 0.59 1.3E-05 37.3 13.9 65 55-123 17-82 (141)
70 PTZ00220 Activator of HSP-90 A 95.5 0.14 3E-06 39.7 8.9 91 53-154 1-93 (132)
71 cd08902 START_STARD4-like Lipi 95.3 0.46 9.9E-06 40.1 12.0 138 42-184 44-197 (202)
72 PLN00188 enhanced disease resi 87.3 9.8 0.00021 37.9 11.8 117 44-160 226-363 (719)
73 PF11687 DUF3284: Domain of un 73.9 37 0.00081 25.9 13.5 95 49-160 3-105 (120)
74 KOG2761|consensus 72.9 60 0.0013 27.8 14.1 117 44-160 52-187 (219)
75 cd08875 START_ArGLABRA2_like C 65.6 89 0.0019 26.9 12.5 116 42-160 57-199 (229)
76 cd08864 SRPBCC_DUF3074 DUF3074 43.0 2E+02 0.0043 24.1 10.9 98 69-168 64-190 (208)
77 PF02713 DUF220: Domain of unk 34.6 24 0.00053 25.0 1.4 15 126-140 29-43 (74)
78 PHA00742 hypothetical protein 33.6 10 0.00022 31.4 -0.8 28 181-208 103-130 (211)
79 PF02974 Inh: Protease inhibit 29.6 65 0.0014 23.7 3.1 26 127-156 9-34 (99)
80 cd07828 nitrobindin nitrobindi 22.8 3E+02 0.0065 21.7 5.9 39 102-140 24-69 (148)
81 PF12139 APS-reductase_C: Aden 20.3 3E+02 0.0065 20.0 4.8 48 67-117 1-49 (83)
No 1
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=100.00 E-value=3.2e-40 Score=260.30 Aligned_cols=143 Identities=31% Similarity=0.536 Sum_probs=131.7
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCC-eEEEEee
Q psy15938 44 KKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPK-LIKANCF 122 (209)
Q Consensus 44 ~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~-~I~~~~~ 122 (209)
|+++..+++++|+|++||++|+||++||+|+|||.+++|+++++..+.|+++|+++++.++|+++|++.++. .|.+.+.
T Consensus 1 m~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~l~ 80 (146)
T COG2867 1 MPQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIRETFTTRVTLKPTARSIDMKLI 80 (146)
T ss_pred CCeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhheeeeeeeeeeecCchhhhhhhhh
Confidence 678999999999999999999999999999999999999999999999999999999999999999999976 8999999
Q ss_pred cCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHHHHhCC
Q psy15938 123 DGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAEMRYGK 190 (209)
Q Consensus 123 ~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~~ly~~ 190 (209)
+| ||+.|.|.|+|.|+++ ++|+|+|.|+|||+|+ .++++..+.+.++++|++||++||+++||.
T Consensus 81 ~G-PFk~L~~~W~F~pl~~---~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 81 DG-PFKYLKGGWQFTPLSE---DACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred cC-ChhhhcCceEEEECCC---CceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99 7999999999999875 7999999999999999 444444444444999999999999999985
No 2
>PRK10724 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=251.75 Aligned_cols=150 Identities=25% Similarity=0.408 Sum_probs=138.9
Q ss_pred ecCCCCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCe
Q psy15938 37 IADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKL 116 (209)
Q Consensus 37 ~~~~~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~ 116 (209)
+.-.+..|.+++.++.|+|++++||++|+||++||+|+|||++++|++++++...|++.++++|+.++|+++++++++++
T Consensus 7 ~~~~~~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~~~~f~srv~~~~~~~ 86 (158)
T PRK10724 7 FLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQS 86 (158)
T ss_pred cccccCcCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCccEEEEEEEEecCCCE
Confidence 33445669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHHHHhCC
Q psy15938 117 IKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAEMRYGK 190 (209)
Q Consensus 117 I~~~~~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~~ly~~ 190 (209)
|.+.+.+| ||++|+|+|+|+|.++ ++|+|+|+++|+|++| .+.+++.+.++.+++|++||++||+++||.
T Consensus 87 I~~~~~~G-pF~~l~g~W~f~p~~~---~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 87 ILMQLVDG-PFKKLIGGWKFTPLSQ---EACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred EEEEecCC-ChhhccceEEEEECCC---CCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999 6999999999999874 5799999999999999 666666676777999999999999999994
No 3
>KOG3177|consensus
Probab=100.00 E-value=1.6e-35 Score=244.64 Aligned_cols=158 Identities=41% Similarity=0.754 Sum_probs=150.7
Q ss_pred Ccceeeeec-CCCCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEec-CCeEEEEEEEeeCCceeEEEE
Q psy15938 30 QQKSFFNIA-DTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKS-EKKIIGSLTIGFPPIVESYTS 107 (209)
Q Consensus 30 ~~r~~~~~~-~~~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~-~~~~~a~l~v~~~~~~~~~ts 107 (209)
+.|+||++. +.+++.+.|+++++++|++++||++|+||+.|.+|+|||++|.|++++ ++++.|+|+|||+++.|+|+|
T Consensus 52 ~~R~f~~~~~~~~~r~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~E~y~S 131 (227)
T KOG3177|consen 52 LRRSFFGFSAPFTNREKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLDERYTS 131 (227)
T ss_pred hhhheeeecCCcchHHHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccchhhee
Confidence 579999999 778899999999999999999999999999999999999999999999 779999999999999999999
Q ss_pred EEEecCCCeEEEEeecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-----hhhhhcchhhhhHHHHHHHHHH
Q psy15938 108 NVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-----AEMRYGNRVLLTSMQMEKAFFA 182 (209)
Q Consensus 108 rv~~~~~~~I~~~~~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-----~~~~~~~~~~~~~~~ml~af~~ 182 (209)
+|+++++..+.....||.+|.+|.+.|+|.|.. +-++.|.|+|+++|||+++ +.+|++.+ ++.|+.||++
T Consensus 132 ~Vt~~~p~l~kt~~~d~rLF~~L~t~Wsf~pg~-~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V----~~~~v~AF~~ 206 (227)
T KOG3177|consen 132 NVTCVKPHLTKTVCADGRLFNHLITIWSFKPGP-NIPRTCTLDFSVSFEFKSLLHSQVATIFFDEV----VKQMVNAFEQ 206 (227)
T ss_pred eeEEecccceEEeeccccHHHhhhheeeeccCC-CCCCeEEEEEEEEEEehhHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 999999999999999999999999999999987 4678999999999999999 77888888 9999999999
Q ss_pred HHHHHhCCCC
Q psy15938 183 EAEMRYGKPT 192 (209)
Q Consensus 183 RA~~ly~~~~ 192 (209)
||+.+||++.
T Consensus 207 ra~~~~gp~~ 216 (227)
T KOG3177|consen 207 RARKLYGPES 216 (227)
T ss_pred HHHHhhCccc
Confidence 9999999886
No 4
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.96 E-value=7.3e-29 Score=193.20 Aligned_cols=137 Identities=39% Similarity=0.582 Sum_probs=128.2
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEeecCcc
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKL 126 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~~G~~ 126 (209)
++.++.|++|+++||++++|+++||+|+|+|.++++++++++...+++.++++++..+|+++++++++++|.+.+.+| +
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-~ 79 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRESFTSRVTLVPPESIEAELVDG-P 79 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEEEEEEEEecCCCEEEEEecCC-C
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHHHH
Q psy15938 127 FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAEMR 187 (209)
Q Consensus 127 F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~~l 187 (209)
|+.++|+|+|+|.++ ++|+|+|.++|++++| ++.+.+.+.++..++|+++|++||+++
T Consensus 80 ~~~~~g~w~~~p~~~---~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~~ 138 (138)
T cd07813 80 FKHLEGEWRFKPLGE---NACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQL 138 (138)
T ss_pred hhhceeEEEEEECCC---CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999974 6899999999999999 777778888888999999999999864
No 5
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.93 E-value=1e-24 Score=173.91 Aligned_cols=136 Identities=12% Similarity=0.141 Sum_probs=120.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEee--CCceeEEEEEEEecCCC-eEEE-Ee
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGF--PPIVESYTSNVTLDRPK-LIKA-NC 121 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~--~~~~~~~tsrv~~~~~~-~I~~-~~ 121 (209)
++++++.|++||++||++|+||++||+|+|+|+++++++++++...+++.+.+ +|+..+|+|+++++++. +|.+ ..
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~~~~ 81 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRARRV 81 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEEEEe
Confidence 46789999999999999999999999999999999999998888888887666 89999999999998854 5887 44
Q ss_pred ecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCc--c-hhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 122 FDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFA--E-AEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 122 ~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~--p-~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
.+| ||..|+|+|+|+|.+ ++|+|+|.++|++++ | .+.+..++++......+++++++||+
T Consensus 82 ~~~-p~~~m~~~W~f~~~~----~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 82 ETG-PFAYMNIRWEYTEVP----EGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred cCC-CcceeeeeEEEEECC----CCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 556 699999999999986 469999999999997 5 67777888788889999999999986
No 6
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.91 E-value=2.8e-23 Score=159.51 Aligned_cols=128 Identities=24% Similarity=0.277 Sum_probs=113.3
Q ss_pred EcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEeecCcccceeee
Q psy15938 53 VGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKLFDHLVT 132 (209)
Q Consensus 53 I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~~G~~F~~l~g 132 (209)
|+||+++||++++|+++||+|+|+|.+++|++++++.+.+++.+..+++...|+++++++++..|.+.+.+| +|+.++|
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~g 79 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQISG-PFKSFEG 79 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSET-TEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecCC-CchhcEE
Confidence 689999999999999999999999999999999999999999999999999999999999988899999999 5999999
Q ss_pred EEEEEeCCC-CCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHH
Q psy15938 133 MWRFHRGLE-DVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFF 181 (209)
Q Consensus 133 ~W~f~p~~~-~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~ 181 (209)
+|+|.+.++ ++..+|+|.+++++++++| ++.+.+.+.+.....|+++|+
T Consensus 80 ~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 80 SWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999873 0013568888888888888 777777777777999998885
No 7
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.88 E-value=1.8e-21 Score=151.71 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=109.8
Q ss_pred EEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEE----ecC--CCeEEEEe
Q psy15938 48 LGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVT----LDR--PKLIKANC 121 (209)
Q Consensus 48 ~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~----~~~--~~~I~~~~ 121 (209)
+.+..|++|+++||++|.|+++||+|+|+|.+++++++.++....++....+.+...+.++++ ..+ ++.|.+.+
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~ 81 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFEM 81 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEEE
Confidence 568899999999999999999999999999999999987776665554333332222333333 222 67899999
Q ss_pred ecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 122 FDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 122 ~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
.+| +|++++|.|+|+|.+++ ++|+|++++++++..+ ++.+.+.+.+.....++++|+++|++
T Consensus 82 ~~g-~~~~~~g~w~~~~~~~~--~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 82 VEG-DFKRFEGSWRLEPLADG--GGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred cCC-chhceEEEEEEEECCCC--CeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999 59999999999998731 4799999999999988 67777777777799999999999974
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.87 E-value=1.1e-20 Score=146.95 Aligned_cols=135 Identities=17% Similarity=0.093 Sum_probs=115.1
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEE-EEEeeCCceeEEEEEEEecC-CCeEEEEeec-
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGS-LTIGFPPIVESYTSNVTLDR-PKLIKANCFD- 123 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~-l~v~~~~~~~~~tsrv~~~~-~~~I~~~~~~- 123 (209)
++.+..|++|+++||++++|+++||+|+|+ .++++++.+++....+ +.++..|...+|++..++++ +++|.|.+.+
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEP 79 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeC
Confidence 357899999999999999999999999999 8888888765543334 56666788888988888998 7889999886
Q ss_pred -CcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc---hhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 124 -GKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE---AEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 124 -G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p---~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
| +|+.++|+|+|+|.++ ++|+|+|.++|+++++ .+.+..++.+.....+|++|+++||+
T Consensus 80 ~~-~~~~~~g~w~~~~~~~---~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 80 PP-PVASMSGEWRFEPLGG---GGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CC-ChhhheeEEEEEECCC---CcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 6 5999999999999874 5799999999999986 66777777777799999999999974
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.86 E-value=2.6e-20 Score=143.33 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=117.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC--eEEEEEEEeeCCceeEEEEEEEecCCCeEEEEee
Q psy15938 45 KEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK--KIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCF 122 (209)
Q Consensus 45 ~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~--~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~ 122 (209)
..++.+..|++|+++||++|+|+++||+|+|+|.++++++.+++ ...+++.++..++...|.++++++++.+|.|...
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTLV 81 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEEe
Confidence 46889999999999999999999999999999999999876543 4567888888889999999999988788999999
Q ss_pred cCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHH
Q psy15938 123 DGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEA 184 (209)
Q Consensus 123 ~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA 184 (209)
+|.++..++|.|+|+|.+ ++|+|++.+++++++| .+.+.+.+.+.....+++++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~----~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 82 EGEGNRSQEGSYTLTPKG----DGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred cccceeEEEEEEEEEECC----CCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 886689999999999987 4799999999999999 666666676666778888877654
No 10
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.76 E-value=2.7e-17 Score=126.48 Aligned_cols=130 Identities=13% Similarity=0.062 Sum_probs=102.9
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeC-CceeEEEEEEE-ecCCCeEEEEeecC
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFP-PIVESYTSNVT-LDRPKLIKANCFDG 124 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~-~~~~~~tsrv~-~~~~~~I~~~~~~G 124 (209)
++.++.|++|+++||++++|+++||+|.|+|.+++++...+ .++.+... |....|+++++ ++++++|.+.+..|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~~ 77 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTR----SHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVEG 77 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCc----eEEEEecCCCCcEEEEEEEeccCCCCEEEEEECCC
Confidence 57889999999999999999999999999999999986522 23444444 77789999875 45677899998888
Q ss_pred cccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-----hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 125 KLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-----AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 125 ~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-----~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
. + ...|.|+|++.++ ++|+|+++++|++.++ ++.+++.+.+......++.|++.||
T Consensus 78 ~-~-~~~~~~~f~~~~~---~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 78 A-D-PNAGSVRFRPAPG---RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred C-C-CcceEEEEEECCC---CCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 4 7 8899999999863 5899999999999987 3566777755555555666666554
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.75 E-value=9e-17 Score=124.09 Aligned_cols=136 Identities=10% Similarity=0.118 Sum_probs=108.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEec---CCCeEEEEee
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLD---RPKLIKANCF 122 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~---~~~~I~~~~~ 122 (209)
+++.++.+++|+++||++++|+++|++|+|+|.++++++ ++...+.+.+++++...+++.+.++. +++++.+...
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIG--PNEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGE 79 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccC--CCeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEE
Confidence 578899999999999999999999999999999998886 35677777877777777887666653 4577777754
Q ss_pred c--CcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHHHHH
Q psy15938 123 D--GKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAEMR 187 (209)
Q Consensus 123 ~--G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA~~l 187 (209)
. +..+..+.+.|.|+|.+ ++|+|++.++++++++++.+...+++..+++++.+|.++.++.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 80 GKGGAGFVKGTARVTLEPDG----GGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EcCCCceEEEEEEEEEEecC----CcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 22378999999999974 5899999999999988555555555555888888888777653
No 12
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.70 E-value=1.2e-15 Score=116.35 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=106.3
Q ss_pred EEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC--eEEEEEEEeeCCceeEEEEEEEe-cCCCeEEEEeecC
Q psy15938 48 LGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK--KIIGSLTIGFPPIVESYTSNVTL-DRPKLIKANCFDG 124 (209)
Q Consensus 48 ~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~--~~~a~l~v~~~~~~~~~tsrv~~-~~~~~I~~~~~~G 124 (209)
+.++.|++|+++||++++|+++|++|.|+|.+++++...+. ....++.+..++...+++.+++. ++++++.+....|
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~~ 81 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSSG 81 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecCC
Confidence 56889999999999999999999999999999999865432 34555566677777788887664 5678889888777
Q ss_pred cccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc---hhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 125 KLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE---AEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 125 ~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p---~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
++. ..+.|+|++.+ ++|+|+++++++++.+ .+.++..+.+.....++++|+++|++
T Consensus 82 -~~~-~~~~~~~~~~~----~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 82 -PFP-YEDTYTFEPVG----GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred -Ccc-eEEEEEEEEcC----CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 464 69999999976 4799999999999665 45666777666688888888888764
No 13
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.69 E-value=9.8e-16 Score=120.17 Aligned_cols=135 Identities=10% Similarity=-0.039 Sum_probs=98.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEec---CC-eEEEEEEEeeCC--ceeEEEEEEEecCCCeEEE
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKS---EK-KIIGSLTIGFPP--IVESYTSNVTLDRPKLIKA 119 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~---~~-~~~a~l~v~~~~--~~~~~tsrv~~~~~~~I~~ 119 (209)
.++.++.|++|+++||++++|+++||+|.|||..+..++.+ .+ ..-+++.....+ ....| ....+++++++.+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~v~~~~p~~~i~~ 81 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM-EITESVPNERIEY 81 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE-EEEecCCCcEEEE
Confidence 67889999999999999999999999999999987665431 11 122222222222 11223 2345677889999
Q ss_pred EeecCcccc-eeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-----hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 120 NCFDGKLFD-HLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-----AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 120 ~~~~G~~F~-~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-----~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
....+.++. ...+.|+|++.+ ++|+|++++++++.++ .+.+++...+...+.++++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 82 ELRFIKPFEATNDVEFTLEPVG----GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEecCCccccceEEEEEEEcC----CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 887544686 899999999986 5899999999999876 4556666666667777788887776
No 14
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.69 E-value=8.7e-16 Score=121.03 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=94.2
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEe-cCCeEEEEEE---EeeCCceeEEEEEEEe-cCCCeEEEEe
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYK-SEKKIIGSLT---IGFPPIVESYTSNVTL-DRPKLIKANC 121 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~-~~~~~~a~l~---v~~~~~~~~~tsrv~~-~~~~~I~~~~ 121 (209)
|+-+..|++|+++||++++|+++||+|+|+|.++++++. .+....+++. .+..+...+++.+++- ++++++.+..
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~ 82 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVRA 82 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEEE
Confidence 567788999999999999999999999999999999985 3333334432 2444666778887654 5678888874
Q ss_pred ecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc----hhhhhcchhhhhHHHHHHHHHH
Q psy15938 122 FDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE----AEMRYGNRVLLTSMQMEKAFFA 182 (209)
Q Consensus 122 ~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p----~~~~~~~~~~~~~~~ml~af~~ 182 (209)
+| +|+. .++|+|++.+ ++|+|++++++++++| +.++++.+++...++|+....+
T Consensus 83 -~g-~~~~-~~~~~~~~~~----~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 140 (146)
T cd07824 83 -SG-DLEG-VGRWTLAPDG----SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEK 140 (146)
T ss_pred -EE-eeeE-EEEEEEEEcC----CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHH
Confidence 67 4775 7999999975 5799999999999985 3444444433334444444433
No 15
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.68 E-value=3.5e-15 Score=122.77 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=113.9
Q ss_pred eeecCCCCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeCC-c-eeEEEEEEEe
Q psy15938 35 FNIADTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFPP-I-VESYTSNVTL 111 (209)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~~-~-~~~~tsrv~~ 111 (209)
+.-..-++....+..+..|++++++||+++.|++.||+|.|+|.+++|+++.++ ...+.+.+.... + ...|+.....
T Consensus 31 ~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~ 110 (195)
T cd08876 31 YTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTT 110 (195)
T ss_pred EEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEE
Confidence 333333456789999999999999999999999999999999999999998876 566666666554 2 3445554433
Q ss_pred cC---CCeEEEEeecCc---c-------cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHH
Q psy15938 112 DR---PKLIKANCFDGK---L-------FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQME 177 (209)
Q Consensus 112 ~~---~~~I~~~~~~G~---~-------F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml 177 (209)
.. ++.+.+...+++ | ++.+.|.|.|++.++ ++|+|+|.+.++++++ ++.+.+.+.+.....++
T Consensus 111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~---~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l 187 (195)
T cd08876 111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN---GKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTL 187 (195)
T ss_pred EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCC---CeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 22 344444433321 2 678899999999874 6899999999999999 77777777777799999
Q ss_pred HHHHHHHH
Q psy15938 178 KAFFAEAE 185 (209)
Q Consensus 178 ~af~~RA~ 185 (209)
++|++||+
T Consensus 188 ~~l~~~~~ 195 (195)
T cd08876 188 ENLRKQLK 195 (195)
T ss_pred HHHHHhhC
Confidence 99999984
No 16
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.64 E-value=1.3e-14 Score=110.81 Aligned_cols=133 Identities=9% Similarity=0.013 Sum_probs=100.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecC-CeEEEEEEEeeCCceeEEEEEEE-ecCC-CeEEEEee
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSE-KKIIGSLTIGFPPIVESYTSNVT-LDRP-KLIKANCF 122 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~-~~~~a~l~v~~~~~~~~~tsrv~-~~~~-~~I~~~~~ 122 (209)
.++.++.|++|+++||+++.|.++|++|+|++.++++++..+ ......+....+ ..+..+++ ++++ ++|.+...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~~ 78 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYRIV 78 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEEec
Confidence 477889999999999999999999999999999999987653 122223333322 33344433 5566 89999988
Q ss_pred cC-cccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHH
Q psy15938 123 DG-KLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEA 184 (209)
Q Consensus 123 ~G-~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA 184 (209)
+| .++..+.+.|+|+|.++ ++|+|+++++|+..++ .+.+.+.+++......++.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~---~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 79 EGPLPVKNYVATIRVTPEGD---GGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CCCCCcccceEEEEEEECCC---CccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 76 56888999999999874 5899999999999986 555566665555777777777765
No 17
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.60 E-value=4.1e-13 Score=102.59 Aligned_cols=134 Identities=15% Similarity=0.070 Sum_probs=97.7
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEE-EecC-CCeEEEEe
Q psy15938 44 KKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNV-TLDR-PKLIKANC 121 (209)
Q Consensus 44 ~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv-~~~~-~~~I~~~~ 121 (209)
|.+++.+..|++|+++||++++|+++|++|.|.+.++++++.++......+. ..|. ..++.++ .+++ ++.+.+..
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~g~-~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVR--VAGR-GTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEE--ECSC-SEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEE--eccc-cceeEEEEEecCCCcEEEEEE
Confidence 6789999999999999999999999999999999999999854443333333 4442 3333333 3456 78899988
Q ss_pred ecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc---hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 122 FDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE---AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 122 ~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p---~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
..+ ++..+.+.|+|+|.+ ++|+|+..+++++..+ ...++...++...+..++.+++.||
T Consensus 78 ~~~-~~~~~~~~~~~~~~~----~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 78 VPS-GFTNGTGRWRFEPVG----DGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp ESS-SSCEEEEEEEEEEET----TTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eec-ceeEEEEEEEEEEcC----CCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 633 578889999999987 4699999999998222 4555556655556666777777664
No 18
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=1.5e-13 Score=107.06 Aligned_cols=116 Identities=12% Similarity=0.092 Sum_probs=96.3
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCe----EEEEEEEeeCCceeEEEEEEE-ecCCCeEEEEe
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKK----IIGSLTIGFPPIVESYTSNVT-LDRPKLIKANC 121 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~----~~a~l~v~~~~~~~~~tsrv~-~~~~~~I~~~~ 121 (209)
++.+..|++|+++||+.++|.+++|+|+|.|.++++++.+++. ....+.+...++..+|+++++ +++++++.+++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f~~~~ 80 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPPRRFVDEQ 80 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCCCeEEEEe
Confidence 4678889999999999999999999999999999999765442 456777777787789999875 45578899999
Q ss_pred ecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcc
Q psy15938 122 FDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGN 167 (209)
Q Consensus 122 ~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~ 167 (209)
.+| +|...+++|.|++.+ ++|+|+..++|++... ++.++..
T Consensus 81 ~~G-~~~~w~h~~~f~~~~----~gT~vt~~v~~~~p~g~lg~~~~~ 122 (137)
T cd07820 81 VSG-PFRSWRHTHRFEAIG----GGTLMTDRVEYRLPLGPLGRLAAP 122 (137)
T ss_pred ccC-CchhCEEEEEEEECC----CceEEEEEEEEeCCchhHHHHHHH
Confidence 999 699999999999976 4799999999999654 4444443
No 19
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=3.5e-13 Score=106.16 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=97.9
Q ss_pred EEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEec----CCCeEEEEeec
Q psy15938 48 LGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLD----RPKLIKANCFD 123 (209)
Q Consensus 48 ~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~----~~~~I~~~~~~ 123 (209)
+.+..|++||++||+++.|+++|+.|+|.|+..++++ ++...++++++.+++...|+.++++. +++++.+....
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 79 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATG 79 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEE
Confidence 4678899999999999999999999999999998854 56889999999999988887665553 45677765332
Q ss_pred --Cc--ccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 124 --GK--LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 124 --G~--~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
+. -.-....+|++.|.+ ++|+|++++++++.+|+..+...+++..++++++.|.+..++
T Consensus 80 ~~~~~~g~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~ 142 (146)
T cd07823 80 KDARGQGTAEATVTLRLSPAG----GGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEA 142 (146)
T ss_pred ecCCCcceEEEEEEEEEEecC----CcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 10 011456689999844 689999999999999944444444444466665555444433
No 20
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.48 E-value=3.8e-12 Score=97.59 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=93.9
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEec-CCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEeecC
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKS-EKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDG 124 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~-~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~~G 124 (209)
.++.++.|++|++.||++++|+++|++|.|.|.++++++.. +.....++.... +....++ -.++++++++.|....+
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-i~~~~p~~~~~~~~~~~ 79 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPG-LVRSTFT-VTELRPGHSFTWTGPAP 79 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCC-CCceEEE-EEEecCCCEEEEEecCC
Confidence 46789999999999999999999999999999999998765 223334444332 2322322 24566788898876543
Q ss_pred cccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc--hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 125 KLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE--AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 125 ~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p--~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
+....+.|.|++.++ ++|++.++.+|.-... .+..+....+...+.++++|++.++
T Consensus 80 --~~~~~~~~~~~~~~~---~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 80 --GISAVHRHEFEAKPD---GGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred --CEEEEEEEEEEEcCC---CcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 345567999999763 5799887765553222 3455666666667888888888876
No 21
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=3.8e-12 Score=94.34 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=96.3
Q ss_pred EEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeC-CceeEEEEEEEe-cCCCeEEEEeecCc
Q psy15938 48 LGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFP-PIVESYTSNVTL-DRPKLIKANCFDGK 125 (209)
Q Consensus 48 ~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~-~~~~~~tsrv~~-~~~~~I~~~~~~G~ 125 (209)
+.+..|++|+++||++++|.++|++|+|+|.+++++................ +....+..+++. +++..+.+....++
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 81 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGGG 81 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEEEecCCCceEEEEecCC
Confidence 5678999999999999999999999999999999998655544555554443 444556666554 34567888877775
Q ss_pred ccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc----hhhhhcchhhhhHHHHHHHHHH
Q psy15938 126 LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE----AEMRYGNRVLLTSMQMEKAFFA 182 (209)
Q Consensus 126 ~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p----~~~~~~~~~~~~~~~ml~af~~ 182 (209)
......+.|.|.+.++ ++|+|++.+++++..+ .+..+.+..+.....++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~---~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 82 GGVDGTGEWRLEPEGD---GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred CCcceeEEEEEEECCC---CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 3448899999999872 4899999999999987 3445555533334444444443
No 22
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=2.6e-11 Score=92.55 Aligned_cols=136 Identities=11% Similarity=0.051 Sum_probs=95.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEE-EecCCeEEEEEEEeeCCceeEEEEE-EEecCCCeEEEEeec
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVT-YKSEKKIIGSLTIGFPPIVESYTSN-VTLDRPKLIKANCFD 123 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vl-e~~~~~~~a~l~v~~~~~~~~~tsr-v~~~~~~~I~~~~~~ 123 (209)
+++.++.|++|+++||+++.|.++|++|.|++.+++.. -..+..+....... ++....++.. .++++++++.+....
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~v~~~~p~~~~~~~~~~ 79 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLP-GGPPRSFKPRVTEVEPPRRLAWRGGL 79 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCC-CCCcEEEEEEEEEEcCCCEeEEEecC
Confidence 36789999999999999999999999999999888776 23444555544332 1233344444 456778999999877
Q ss_pred Ccc-cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc--hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 124 GKL-FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE--AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 124 G~~-F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p--~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
|++ +-...+.|+|++.++ ++|+|++...+.-... .+.+......+..+++++++++.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~---~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 80 PFPGLLDGEHSFELEPLGD---GGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CCCcEeeEEEEEEEEEcCC---CcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 743 235778999999853 6899988766542211 4555666655557777888777764
No 23
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.34 E-value=6.5e-11 Score=90.64 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=93.4
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEE-EEecCCCeEEEEeecCc
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSN-VTLDRPKLIKANCFDGK 125 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsr-v~~~~~~~I~~~~~~G~ 125 (209)
+..++.|++|+++||++++|.++||+|+|.|....+....++....... +..+.......+ ..++++++|.+....++
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~-~~~g~~~~~~~~i~~~~~~~~i~~~~~~~~ 80 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMT-GPDGEEGWVSGEVLEVEPPRRLVFTWAFSD 80 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEE-CCCCCEEeccEEEEEEcCCCeEEEEecccC
Confidence 5778899999999999999999999999986555555454444443332 222233333443 44667889999877763
Q ss_pred --ccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 126 --LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 126 --~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
.+......|+|.+.+ ++|+|++.+++....+.+..+....+.-...++..+++.||
T Consensus 81 ~~~~~~~~~~~~~~~~~----~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 81 ETPGPETTVTVTLEETG----GGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred CCCCCceEEEEEEEECC----CCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHhh
Confidence 267889999999987 47999999988887542333333333346667777777776
No 24
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.19 E-value=4.3e-10 Score=92.21 Aligned_cols=137 Identities=15% Similarity=0.069 Sum_probs=110.3
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEee-CCceeEEEEEEEecCC-CeEEE
Q psy15938 42 SKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGF-PPIVESYTSNVTLDRP-KLIKA 119 (209)
Q Consensus 42 ~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~-~~~~~~~tsrv~~~~~-~~I~~ 119 (209)
.+..+++++++|+.|+++||++=.|.|+.|.|+.|+.+++|++... .+|.+.. ++....|.++++-+.+ .+|.|
T Consensus 67 ~~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----SrW~~~ap~g~~v~Wea~it~d~~~e~I~W 142 (217)
T COG5637 67 AKPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----SRWKANAPLGLEVEWEAEITKDIPGERIQW 142 (217)
T ss_pred cCceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----cceeEcCCCCceEEEeehhhccCCCcEEee
Confidence 5677999999999999999999999999999999999999997633 7788877 7889999999998874 69999
Q ss_pred EeecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-----hhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 120 NCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-----AEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 120 ~~~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-----~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
++.+|. =-.-.|.=+|.+.++ +.|.|.+.+.|.+..- ...+|++........=++.|++-.+.
T Consensus 143 ~Sl~Ga-~v~NsG~VrF~~~pg---~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~ 210 (217)
T COG5637 143 ESLPGA-RVENSGAVRFYDAPG---DSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQEN 210 (217)
T ss_pred ecCCCC-cCCCCccEEeeeCCC---CceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHc
Confidence 999994 335678899999874 5799999999998876 45666666333333334556555544
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=99.15 E-value=6e-09 Score=82.09 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=100.6
Q ss_pred EEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecC---CCe--EEEEeecC
Q psy15938 50 RKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDR---PKL--IKANCFDG 124 (209)
Q Consensus 50 ~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~---~~~--I~~~~~~G 124 (209)
+..|++|+++||+.+.|.+++-.=+|+|++.+.+. +.+.+.+++++++++.+|..++++.. +.. +.++-.+.
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~~~g~g~ 78 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYTLEFEGRGR 78 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceEeeeeccCC
Confidence 56799999999999999999999999999998875 78999999999999999999988764 444 55654333
Q ss_pred cccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHHHHH
Q psy15938 125 KLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAEMR 187 (209)
Q Consensus 125 ~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA~~l 187 (209)
.--....+.=++...++ ++|+|+++.++++.+++..+-+.+++..++.|++.|.+..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~---~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 79 GGGSSASANITLSLEDD---GGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp TCCEEEEEEEEEEECCC---TCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEEcCCC---CCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 22334444544555432 3499999999999999555556666666999999998887764
No 26
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=4.7e-09 Score=81.43 Aligned_cols=108 Identities=9% Similarity=-0.038 Sum_probs=73.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEE-----ecCCeEEEEEEEeeCCceeEEEEEE-EecCCCeEEE
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTY-----KSEKKIIGSLTIGFPPIVESYTSNV-TLDRPKLIKA 119 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle-----~~~~~~~a~l~v~~~~~~~~~tsrv-~~~~~~~I~~ 119 (209)
+++.++.|++|++.||++++|.++||+|.|.+....+.+ +-++.+...+.. .+....+..++ .+++++++.+
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~g~~~~~~~~v~~~~p~~~l~~ 78 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRL--DGGPYRITNHVVAFEENRLIAW 78 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEc--CCCceEEEEEEEEECCCCEEEE
Confidence 467899999999999999999999999998644322221 112344444433 24445666655 4677889999
Q ss_pred Eee-cCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeC
Q psy15938 120 NCF-DGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFF 158 (209)
Q Consensus 120 ~~~-~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~ 158 (209)
... .+.+......+|.|++.++ ++|+|++..+|...
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~---g~T~vt~~~~~~g~ 115 (144)
T cd07825 79 RPGPAGQEPGGHRWRWELEPIGP---GRTRVTETYDWSAV 115 (144)
T ss_pred EccCCCCCCCceeEEEEEEECCC---CcEEEEEEEeccCC
Confidence 854 2322345667889999763 57999888766644
No 27
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.96 E-value=1.4e-07 Score=75.06 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=88.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhc-c-cccCCCcceEEEEEecCC-eEEEEEEEeeCCceeEEEEEEE-ecC-CCeEEEE
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVEN-Y-KNFVPFCKKSVVTYKSEK-KIIGSLTIGFPPIVESYTSNVT-LDR-PKLIKAN 120 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~-Y-peFlP~c~~s~Vle~~~~-~~~a~l~v~~~~~~~~~tsrv~-~~~-~~~I~~~ 120 (209)
.++.+..|++|++++|+++.|.++ . +.|.|.++++++++-+++ ...-.++..-++-...+..+++ +|+ ++++.++
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~ 81 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYT 81 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEE
Confidence 467899999999999999999994 5 568899999999876533 3344455554542344666665 455 5789999
Q ss_pred eecCcc----cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 121 CFDGKL----FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 121 ~~~G~~----F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
.++|++ |+.+.++.+|.|.++ ++|.|...++|+...+
T Consensus 82 vveg~~~~~~~~~y~~t~~v~~~~~---~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 82 VIEGDVLKDGYKSYKVEIKFVPKGD---GGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEecccccCceEEEEEEEEEEECCC---CCEEEEEEEEEEECCC
Confidence 999975 789999999999854 6899999999998876
No 28
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.91 E-value=5.2e-08 Score=81.87 Aligned_cols=143 Identities=12% Similarity=0.042 Sum_probs=101.2
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeCC-c-eeEEEEE-E---EecC
Q psy15938 41 FSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFPP-I-VESYTSN-V---TLDR 113 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~~-~-~~~~tsr-v---~~~~ 113 (209)
++..+.+..+..++++++.+.+++.|++.|++|+|.|.++++++..+. ...+-+.+.+.- + ...+..+ . .++.
T Consensus 42 ~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 42 DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeecc
Confidence 455899999999999999999999999999999999999999987654 344445544332 2 2222222 1 1223
Q ss_pred CCeE--EEEeecCc-----------c--------cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc--hhhhhcchhh
Q psy15938 114 PKLI--KANCFDGK-----------L--------FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE--AEMRYGNRVL 170 (209)
Q Consensus 114 ~~~I--~~~~~~G~-----------~--------F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p--~~~~~~~~~~ 170 (209)
++.| ...+++.+ | .....|.|.|+|.++ ++|.|++....++++. +.-+.+.+.+
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~---~~t~v~~~~~~DP~g~~IP~~liN~~~k 198 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP---TKCYLRFVANVDPKMSLVPKSLLNFVAR 198 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC---CCeEEEEEEEcCCCcccCCHHHHHHHHH
Confidence 3433 33333311 0 246789999999974 6899999999998754 4555566656
Q ss_pred hhHHHHHHHHHHHHHH
Q psy15938 171 LTSMQMEKAFFAEAEM 186 (209)
Q Consensus 171 ~~~~~ml~af~~RA~~ 186 (209)
+.+..++.++++.|+.
T Consensus 199 ~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 199 KFAGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6699999999998875
No 29
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.86 E-value=1.6e-07 Score=79.21 Aligned_cols=141 Identities=9% Similarity=0.136 Sum_probs=99.3
Q ss_pred CCCceEEEEEEEEcCCHHHHH-HHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeC----C-ceeEEEEEEEecC
Q psy15938 41 FSKKKEYLGRKLVGYSREQMY-EVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFP----P-IVESYTSNVTLDR 113 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~vf-~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~----~-~~~~~tsrv~~~~ 113 (209)
++. +.|..+..+++|++++| +++.|++.+++|.+.|.+++++++.++ ..... .+... + -...|.....+.+
T Consensus 46 ~~~-~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~ 123 (209)
T cd08906 46 FHG-KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSY-DVAAGAAGGVVSPRDFVNVRRIER 123 (209)
T ss_pred CCC-cEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEE-EEccccccCCCCCCceEEEEEEEe
Confidence 345 78999999999999998 699999999999999999999998764 33332 33221 2 2555666555544
Q ss_pred --CCeEEEE-e--------ecCc--ccceeeeEEEEEe-CCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHH
Q psy15938 114 --PKLIKAN-C--------FDGK--LFDHLVTMWRFHR-GLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEK 178 (209)
Q Consensus 114 --~~~I~~~-~--------~~G~--~F~~l~g~W~f~p-~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~ 178 (209)
+..|.+. + .+|- ...+..|.|.+.+ .+ ++.|+|+|.+..++++- ++.+.|++..++.-..++
T Consensus 124 ~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~---~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~ 200 (209)
T cd08906 124 RRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASN---PSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFAS 200 (209)
T ss_pred cCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCC---CCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2233321 1 1110 0125677888775 33 36899999999999998 777778887666878888
Q ss_pred HHHHHHHH
Q psy15938 179 AFFAEAEM 186 (209)
Q Consensus 179 af~~RA~~ 186 (209)
+++++++.
T Consensus 201 ~LR~~~~~ 208 (209)
T cd08906 201 HLRQRIRD 208 (209)
T ss_pred HHHHHHhh
Confidence 88888865
No 30
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.84 E-value=2.7e-07 Score=73.75 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=109.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecC----CCeEEEEe
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDR----PKLIKANC 121 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~----~~~I~~~~ 121 (209)
.|+.+..|++|+++||+.+.|-|....=+|.|.+.+.. ++.+.+.+.+..+.++.++..++.+.. +++|.+.-
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~---g~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g 78 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETN---GDEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITING 78 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeec---CCeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEe
Confidence 46788899999999999999999999999999998754 458999999999999999999988764 46777765
Q ss_pred ecCc--ccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 122 FDGK--LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 122 ~~G~--~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
..|- -|-.....-.+.+.++ +|+|.+..+.+....+..+-.++++..+++|++.|.+.-.+
T Consensus 79 ~G~~~~g~~~~~~~v~l~~~g~----gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 79 SGGGAAGFADGTVDVQLEPSGE----GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred ecccccceeeeeeEEEEEEcCC----CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5411 1667778888888773 59999999999999977777777777788888887766554
No 31
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.83 E-value=1.1e-07 Score=80.10 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=97.0
Q ss_pred eEEEEEEEEcCCHHHHH-HHHhchhcccccCCCcceEEEEEecCC-eEEEEE-EEeeC--Cc-eeEEEEEEEecC--CCe
Q psy15938 45 KEYLGRKLVGYSREQMY-EVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSL-TIGFP--PI-VESYTSNVTLDR--PKL 116 (209)
Q Consensus 45 ~~~~~~~~I~~~~~~vf-~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l-~v~~~--~~-~~~~tsrv~~~~--~~~ 116 (209)
+.++.+..+++++++++ .++.|++.+++|.+.|.+++++++.++ ...... ..... .+ ...|.....+.. +..
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 88999999999999999 888899999999999999999988765 222222 22221 12 344444444433 222
Q ss_pred EEE-EeecCc-------c--cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 117 IKA-NCFDGK-------L--FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 117 I~~-~~~~G~-------~--F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
|.+ .+.+-+ . .....|.|.|+|+++ +++.|+|++.+..++++. +..+.+.+..++.-..+.++++++.
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~-~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG-DPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC-CCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 322 111111 0 135678999999863 346899999999999998 7777777766667677777777765
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.68 E-value=3e-06 Score=70.85 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=96.7
Q ss_pred eEEEEEEEEcCCHHHHHH-HHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeC----Cc-eeEEEEEEEecC-CCe-
Q psy15938 45 KEYLGRKLVGYSREQMYE-VVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFP----PI-VESYTSNVTLDR-PKL- 116 (209)
Q Consensus 45 ~~~~~~~~I~~~~~~vf~-vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~----~~-~~~~tsrv~~~~-~~~- 116 (209)
+.+..+..++++++++|+ ++.|++.+++|.+.|.+++++++-++....-..+... .+ ...|.....+.. ++.
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 678999999999999986 6679999999999999999999876533322222211 11 233333333222 222
Q ss_pred -EEEEeecCc-------c--cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 117 -IKANCFDGK-------L--FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 117 -I~~~~~~G~-------~--F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
|...+++-+ . ...+.|.|.|+|.++ ++++|.|++.+..++++- +..+.+.+.....-..++++++.++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~-~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN-NPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC-CCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHh
Confidence 222322211 0 124568999999863 346899999999999987 6777777766667788888888887
Q ss_pred HH
Q psy15938 186 MR 187 (209)
Q Consensus 186 ~l 187 (209)
++
T Consensus 207 ~~ 208 (208)
T cd08868 207 TL 208 (208)
T ss_pred hC
Confidence 53
No 33
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.63 E-value=2.5e-06 Score=71.87 Aligned_cols=132 Identities=9% Similarity=0.065 Sum_probs=90.4
Q ss_pred CceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeC--C--ceeEEEEEEEecC--CC
Q psy15938 43 KKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFP--P--IVESYTSNVTLDR--PK 115 (209)
Q Consensus 43 ~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~--~--~~~~~tsrv~~~~--~~ 115 (209)
..+.+.....++++++++|+++.|++++++|.+.|.+++|+++-++ .....+..... . -...|.....+.. +.
T Consensus 43 ~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 43 TYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred CcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 5677888889999999999999999999999999999999998654 44455555422 2 3455555544433 22
Q ss_pred -eEEEEeecC--------cc--cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc--hhhhhcchhhhhHH
Q psy15938 116 -LIKANCFDG--------KL--FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE--AEMRYGNRVLLTSM 174 (209)
Q Consensus 116 -~I~~~~~~G--------~~--F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p--~~~~~~~~~~~~~~ 174 (209)
.|...+++. .. ...+.|.|.++|...+.++.|+|+|.+..+++++ +..+.|.+.++...
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~ 194 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPL 194 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHHHHhccH
Confidence 233333222 01 2367899999998211126899999999999954 56666666333333
No 34
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.62 E-value=1.6e-06 Score=74.60 Aligned_cols=117 Identities=8% Similarity=-0.014 Sum_probs=86.0
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeC--CceeEEEEEEEec---CC
Q psy15938 41 FSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFP--PIVESYTSNVTLD---RP 114 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~--~~~~~~tsrv~~~---~~ 114 (209)
+++...++.+..++++++++|+++.|++.+++|.+.|.+++++++-++ .....+..... .-...++....+. +.
T Consensus 73 ~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 73 QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCC
Confidence 467788999999999999999999999999999999999999997654 34445544432 2345566655442 21
Q ss_pred -C--eEEEEeecCc-------c--cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 115 -K--LIKANCFDGK-------L--FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 115 -~--~I~~~~~~G~-------~--F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
. .|.+.++.-+ - ...+.|-|.++|.++ ++|+|+|.+..+.+.-
T Consensus 153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~---~~t~VtY~~~~dPg~~ 207 (235)
T cd08873 153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCG---TCTEVSYYNETNPKLL 207 (235)
T ss_pred CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCC---CcEEEEEEEEcCCCcc
Confidence 1 3444444411 0 246789999999874 6899999999988865
No 35
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.62 E-value=3.8e-06 Score=70.47 Aligned_cols=144 Identities=14% Similarity=-0.012 Sum_probs=100.0
Q ss_pred CCCceEEEEEEEE-cCCHHHHHHHHhchhcccccCCCcceEEEEEecCC--eEEEEEEEeeCC--ceeEEEEEEEe-cC-
Q psy15938 41 FSKKKEYLGRKLV-GYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK--KIIGSLTIGFPP--IVESYTSNVTL-DR- 113 (209)
Q Consensus 41 ~~~~~~~~~~~~I-~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~--~~~a~l~v~~~~--~~~~~tsrv~~-~~- 113 (209)
++....+.....+ +++++++++++.|.+.+++|.+.|.+.++++.+++ .....+.+.+.- -...|+....+ ..
T Consensus 46 ~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~ 125 (209)
T cd08870 46 GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESD 125 (209)
T ss_pred CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcC
Confidence 4667889999999 67999999999999999999999999999998765 555666666553 24555554433 22
Q ss_pred CCe--EEEEeec-------Ccc-cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHH
Q psy15938 114 PKL--IKANCFD-------GKL-FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFA 182 (209)
Q Consensus 114 ~~~--I~~~~~~-------G~~-F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~ 182 (209)
++. |...+++ |-. .+.+.|.|.++|.+ +++++|.+++.+..+.++. ++-+.+.+.+..+...++.+.+
T Consensus 126 ~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~-~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 126 DRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVK-GDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred CCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEec-CCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 222 2222222 211 35688999999983 1136899988887776655 5666666655557777777777
Q ss_pred HHH
Q psy15938 183 EAE 185 (209)
Q Consensus 183 RA~ 185 (209)
.++
T Consensus 205 a~~ 207 (209)
T cd08870 205 ALR 207 (209)
T ss_pred HHh
Confidence 664
No 36
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.57 E-value=8.8e-06 Score=68.68 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=101.7
Q ss_pred eeecCCCCCceEEEEEEEE-cCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeC--CceeEEEEEEE
Q psy15938 35 FNIADTFSKKKEYLGRKLV-GYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFP--PIVESYTSNVT 110 (209)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~I-~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~--~~~~~~tsrv~ 110 (209)
+.-..-++.+..+.....+ +++++++++++.|.+.+++|.+.|.+++++++.++ .........+. .-...|.....
T Consensus 37 y~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~ 116 (222)
T cd08871 37 WTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRS 116 (222)
T ss_pred EEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEE
Confidence 3334445777889888887 79999999999999999999999999999988654 23333333322 22333443333
Q ss_pred ecC-CCe-EE-EEeecCc-------cc--ceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHH
Q psy15938 111 LDR-PKL-IK-ANCFDGK-------LF--DHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQME 177 (209)
Q Consensus 111 ~~~-~~~-I~-~~~~~G~-------~F--~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml 177 (209)
+.. ++. +. ..+++-+ .. ..+.|.|.|+|.++ ++|+|++....++++. +..+.+.+.......++
T Consensus 117 ~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~---~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l 193 (222)
T cd08871 117 WLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP---KGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVM 193 (222)
T ss_pred EEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC---CCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHH
Confidence 222 222 22 2222110 11 13578899999864 6899999999999988 66666777666688888
Q ss_pred HHHHHHHHHH
Q psy15938 178 KAFFAEAEMR 187 (209)
Q Consensus 178 ~af~~RA~~l 187 (209)
+.+++-|++.
T Consensus 194 ~~l~k~~~~y 203 (222)
T cd08871 194 KKLHKAALKY 203 (222)
T ss_pred HHHHHHHHHH
Confidence 8888888763
No 37
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.55 E-value=8.1e-06 Score=68.52 Aligned_cols=145 Identities=11% Similarity=-0.018 Sum_probs=96.7
Q ss_pred CCCceEEEEEEEE-cCCHHHHHHHHhchhcccccCCCcceEEEEEecC--CeEEEEEEEeeCC-c-eeEEEEEEE--ecC
Q psy15938 41 FSKKKEYLGRKLV-GYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSE--KKIIGSLTIGFPP-I-VESYTSNVT--LDR 113 (209)
Q Consensus 41 ~~~~~~~~~~~~I-~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~--~~~~a~l~v~~~~-~-~~~~tsrv~--~~~ 113 (209)
++....+.....+ +++++++++++.|.+.+++|.+.|.+.+++++.+ +....-+.+.+.- + ...|..... .++
T Consensus 41 ~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~ 120 (207)
T cd08911 41 GTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDE 120 (207)
T ss_pred CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcC
Confidence 4677789987766 9999999999999999999999999999999853 4455556666552 2 334444433 333
Q ss_pred C-Ce--EEEEeec--------Ccc-cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHH
Q psy15938 114 P-KL--IKANCFD--------GKL-FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAF 180 (209)
Q Consensus 114 ~-~~--I~~~~~~--------G~~-F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af 180 (209)
+ .. |...+++ |-. ...+.|.|.++|.++.+.++|++.+....+.++. ++-+.+.+.....-++++.+
T Consensus 121 ~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l 200 (207)
T cd08911 121 ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERL 200 (207)
T ss_pred CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHH
Confidence 2 23 2323332 200 2367899999998421236799998887777765 56666666444466666666
Q ss_pred HHHHH
Q psy15938 181 FAEAE 185 (209)
Q Consensus 181 ~~RA~ 185 (209)
++-|+
T Consensus 201 ~~a~~ 205 (207)
T cd08911 201 RNAAL 205 (207)
T ss_pred HHHHh
Confidence 66554
No 38
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.53 E-value=2.3e-05 Score=62.89 Aligned_cols=139 Identities=11% Similarity=0.036 Sum_probs=95.0
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeCC-c-eeEEEEEEEe--cCCC
Q psy15938 41 FSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFPP-I-VESYTSNVTL--DRPK 115 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~~-~-~~~~tsrv~~--~~~~ 115 (209)
++.+..+.....++++++++++++.|++.+++|.+.|.+++++++.++ .....+...... + ...|...... +.++
T Consensus 35 ~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~ 114 (193)
T cd00177 35 DSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDG 114 (193)
T ss_pred CCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCC
Confidence 346788999999999999999999999999999999999999998765 333343333332 2 1122222111 2223
Q ss_pred e--EEEEeecCc-------ccc--eeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHH
Q psy15938 116 L--IKANCFDGK-------LFD--HLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAE 183 (209)
Q Consensus 116 ~--I~~~~~~G~-------~F~--~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~R 183 (209)
. +...+++.+ ..+ ...|.|.|++.++ ++|+|++....++++. +..+.+.+ +......+.+.
T Consensus 115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~---~~~~vt~~~~~D~~g~iP~~~~~~~----~~~~~~~~~~~ 187 (193)
T cd00177 115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP---GKTKVTYVLQVDPKGSIPKSLVNSA----AKKQLASFLKD 187 (193)
T ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC---CCEEEEEEEeeCCCCCccHHHHHhh----hhhccHHHHHH
Confidence 3 223333331 111 3368899999963 7899999999999998 78888888 55666666665
Q ss_pred HHH
Q psy15938 184 AEM 186 (209)
Q Consensus 184 A~~ 186 (209)
.+.
T Consensus 188 ~~~ 190 (193)
T cd00177 188 LRK 190 (193)
T ss_pred HHH
Confidence 544
No 39
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.49 E-value=4.8e-06 Score=63.42 Aligned_cols=127 Identities=7% Similarity=-0.073 Sum_probs=78.6
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEE-EecCCCeEEEEeecCc
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNV-TLDRPKLIKANCFDGK 125 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv-~~~~~~~I~~~~~~G~ 125 (209)
+..++.|++|+++||+++.|.++|++|++.+.- ..--+.++.+... .+.. ........+ .++++++|.+....+.
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~-~~~~~~G~~~~~~--~~~~-~~~~~~~~v~~~~~~~~l~~~~~~~~ 77 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTV-ESDWKVGSAFEYR--RGDD-GTVDVEGEVLESDPPRRLVHTWRAVW 77 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheeccccc-ccCCcCCCeEEEE--eCCC-cccccceEEEEecCCCeEEEEEecCC
Confidence 567899999999999999999999999987431 1111223333322 2211 111223333 4677888877654321
Q ss_pred -----ccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHHH
Q psy15938 126 -----LFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEAE 185 (209)
Q Consensus 126 -----~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA~ 185 (209)
.-.....+|.|++.+ ++|+|++..+.....+ ...-..+. -..+++.+++.++
T Consensus 78 ~~~~~~~~~~~v~~~l~~~~----~~t~l~~~~~~~~~~~~~~~~~~~g----w~~~l~~Lk~~~e 135 (136)
T cd08893 78 DPEMAAEPPSRVTFEIEPVG----DVVKLTVTHDGFPPGSPTLEGVSGG----WPAILSSLKTLLE 135 (136)
T ss_pred CcccCCCCCEEEEEEEEecC----CcEEEEEEecCCCCchhHHHhhhcC----HHHHHHHHHHHhc
Confidence 123567789999976 5799888876644443 33333344 5667888887775
No 40
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=98.45 E-value=5.2e-06 Score=71.43 Aligned_cols=116 Identities=9% Similarity=-0.046 Sum_probs=82.3
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeC---CceeEEEEEEEec---CC
Q psy15938 41 FSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFP---PIVESYTSNVTLD---RP 114 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~---~~~~~~tsrv~~~---~~ 114 (209)
+++.+.+..+..++++++++|+++.|++++++|.+.|.+++++++.++....-...... .-...++.+..+. +.
T Consensus 74 ~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 74 EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCC
Confidence 57788999999999999999999999999999999999999999865422234444433 2345666655542 12
Q ss_pred C---eEEEEeecCc-------c--cce-eeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 115 K---LIKANCFDGK-------L--FDH-LVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 115 ~---~I~~~~~~G~-------~--F~~-l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
+ .|...++..+ . ... +.|. .++|+++ ++|+|+|.+..+.+.-
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~---~~~~VtY~~~~dPg~l 208 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDS---NSCTVSYFNQISASIL 208 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCC---CcEEEEEEEEcCCccc
Confidence 2 2333433320 0 124 6777 9999875 6899999999998543
No 41
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=98.42 E-value=7.6e-06 Score=70.62 Aligned_cols=114 Identities=8% Similarity=0.013 Sum_probs=78.4
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeC---Cc-eeEEEEEEEecC---C
Q psy15938 42 SKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFP---PI-VESYTSNVTLDR---P 114 (209)
Q Consensus 42 ~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~---~~-~~~~tsrv~~~~---~ 114 (209)
+....|+.+..++++++++|+++.|++++++|.+.|.+++++++.++....-...... ++ ...|+....+.+ .
T Consensus 78 s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 78 DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 5567888999999999999999999999999999999999999876533333333222 22 455555544422 1
Q ss_pred C---eEEEEeecCc--c-------cceeeeEEEEEeCCCCCCCceEEEEEEEEEeC
Q psy15938 115 K---LIKANCFDGK--L-------FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFF 158 (209)
Q Consensus 115 ~---~I~~~~~~G~--~-------F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~ 158 (209)
. .|...++.-+ | ...+.|.|.|.|.++ +.|+|+|....+.+
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~---~~t~vtY~~~~dPG 210 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESD---QLTKVSYYNQATPG 210 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCC---CcEEEEEEEEeCCc
Confidence 1 1333322110 1 236788999999874 68999998766654
No 42
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=9.2e-06 Score=64.87 Aligned_cols=127 Identities=9% Similarity=-0.024 Sum_probs=79.7
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEE-EecCCCeEEEEee
Q psy15938 44 KKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNV-TLDRPKLIKANCF 122 (209)
Q Consensus 44 ~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv-~~~~~~~I~~~~~ 122 (209)
...+..++.|++|+++||+++.|.++|++|+|.+ . .--..|+.+...+.-. ....+...+ .+++++++.+...
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-~--~~~~~G~~~~~~~~~~---~~~~~~~~v~e~~p~~~l~~~~~ 83 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPERLARWFAPG-T--GDLRVGGRVEFVMDDE---EGPNATGTILACEPPRLLAFTWG 83 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-C--CCcccCceEEEEecCC---CCCccceEEEEEcCCcEEEEEec
Confidence 3679999999999999999999999999999932 1 1111223333322111 112333333 4667888888876
Q ss_pred cCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHHHH
Q psy15938 123 DGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEAEM 186 (209)
Q Consensus 123 ~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA~~ 186 (209)
.++ ......|.|++.+ ++|+|++..++............. -..++..+++.+++
T Consensus 84 ~~~--~~~~~~~~l~~~~----~gT~v~~~~~~~~~~~~~~~~~~G----W~~~L~~Lk~~~e~ 137 (157)
T cd08899 84 EGG--GESEVRFELAPEG----DGTRLTLTHRLLDERFGAGAVGAG----WHLCLDVLEAALEG 137 (157)
T ss_pred CCC--CCceEEEEEEEcC----CCEEEEEEEeccCchhhhhhhccc----HHHHHHHHHHHHcC
Confidence 653 3456688888865 579999998775443211122223 44556666666653
No 43
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.37 E-value=2.5e-05 Score=65.61 Aligned_cols=139 Identities=10% Similarity=0.072 Sum_probs=89.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHhchhcc--cccCCCcceEEEEEecCCe-EEEEEEEeeC--C-c-eeEEEEEEEecC--CC
Q psy15938 45 KEYLGRKLVGYSREQMYEVVSDVENY--KNFVPFCKKSVVTYKSEKK-IIGSLTIGFP--P-I-VESYTSNVTLDR--PK 115 (209)
Q Consensus 45 ~~~~~~~~I~~~~~~vf~vV~DVe~Y--peFlP~c~~s~Vle~~~~~-~~a~l~v~~~--~-~-~~~~tsrv~~~~--~~ 115 (209)
..+..+..++++++++|+++-|.+++ ++|.+.|.+++++++-++. ....+..... + + ...+.....+.+ ++
T Consensus 46 ~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 46 NLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred cEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCc
Confidence 34889999999999999999999887 9999999999999987653 3344322211 1 2 334444333322 33
Q ss_pred eEEE--EeecCc-------ccc---e-eeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHH
Q psy15938 116 LIKA--NCFDGK-------LFD---H-LVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFF 181 (209)
Q Consensus 116 ~I~~--~~~~G~-------~F~---~-l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~ 181 (209)
.|.+ .+.+.+ ..+ + ..|.|...|.+ +++|+|++.+..++++- +.-+.+.+..++....++.++
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~---~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE---PDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC---CCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHH
Confidence 3333 222221 122 2 34556555433 36899999999999988 677777775444556666666
Q ss_pred HHHHH
Q psy15938 182 AEAEM 186 (209)
Q Consensus 182 ~RA~~ 186 (209)
+..+.
T Consensus 203 ~~~~~ 207 (208)
T cd08903 203 KAVKA 207 (208)
T ss_pred HHHhh
Confidence 66543
No 44
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=98.33 E-value=9.3e-05 Score=60.98 Aligned_cols=143 Identities=8% Similarity=-0.033 Sum_probs=95.3
Q ss_pred CCCceEEEEEEEEcCCHHH-HHHHHhchhcccccCCCcceEEEEEecCCe-EEEEEEEeeC--Cc-eeEEEEEEEe--cC
Q psy15938 41 FSKKKEYLGRKLVGYSREQ-MYEVVSDVENYKNFVPFCKKSVVTYKSEKK-IIGSLTIGFP--PI-VESYTSNVTL--DR 113 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~-vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~-~~a~l~v~~~--~~-~~~~tsrv~~--~~ 113 (209)
++....+.....+++++++ +.+++.|.+..++|.+.|.++++++..++. .......... ++ ...|.....+ +.
T Consensus 41 ~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~ 120 (206)
T smart00234 41 RSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELV 120 (206)
T ss_pred CCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcC
Confidence 3678899999999999997 678999999999999999999999886542 2222222222 22 2333332222 12
Q ss_pred CC-e-EEEEeecCccc---------ceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHH
Q psy15938 114 PK-L-IKANCFDGKLF---------DHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFF 181 (209)
Q Consensus 114 ~~-~-I~~~~~~G~~F---------~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~ 181 (209)
++ . |...+.+.+-+ ..+.|.|.|+|.++ +.|+|++....++++. +..+.+.+.+.....+++.++
T Consensus 121 ~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~---~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~ 197 (206)
T smart00234 121 DGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN---GPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWV 197 (206)
T ss_pred CCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC---CCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHH
Confidence 22 2 33334433211 35689999999874 5699999999999987 566666665555666666665
Q ss_pred HHHHH
Q psy15938 182 AEAEM 186 (209)
Q Consensus 182 ~RA~~ 186 (209)
+.++.
T Consensus 198 ~~~~~ 202 (206)
T smart00234 198 ATLQK 202 (206)
T ss_pred HHHHH
Confidence 55543
No 45
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.21 E-value=0.00016 Score=60.20 Aligned_cols=135 Identities=6% Similarity=-0.103 Sum_probs=89.8
Q ss_pred CCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEee--CCceeEEEEEEEec---CC
Q psy15938 41 FSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGF--PPIVESYTSNVTLD---RP 114 (209)
Q Consensus 41 ~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~--~~~~~~~tsrv~~~---~~ 114 (209)
++..+.++.+..++++++++++++.|.. ++|.+.|.+++++++-++ .......+.. ..-...|.....+. +.
T Consensus 40 ~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~ 117 (197)
T cd08869 40 GHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPK 117 (197)
T ss_pred CCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCC
Confidence 3578899999999999999999998863 999999999999998764 3333333322 22355555553322 12
Q ss_pred C--eEEEEeecC--c----c--cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHH
Q psy15938 115 K--LIKANCFDG--K----L--FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFF 181 (209)
Q Consensus 115 ~--~I~~~~~~G--~----~--F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~ 181 (209)
. .|...+++- . . ...+.|.|.++|.++ ++|+|++.+..++++- ++-+ .++...++..+|+.++
T Consensus 118 g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~---~~t~vty~~~~Dp~G~iP~wl-~N~~~~~~~~~~~~l~ 191 (197)
T cd08869 118 GACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGS---GKSRVTHICRVDLRGRSPEWY-NKVYGHLCARELLRIR 191 (197)
T ss_pred CcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCC---CCeEEEEEEEECCCCCCCcee-ecchHhHHHHHHHHHH
Confidence 2 345555531 0 1 245689999999874 6899999999999987 4333 3332233445555443
No 46
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.18 E-value=0.00025 Score=59.13 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=88.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHhc--hhcccccCCCcceEEEEEecCCeEE-EEEEEee--CC-c-eeEEEEE---EEecCC
Q psy15938 45 KEYLGRKLVGYSREQMYEVVSD--VENYKNFVPFCKKSVVTYKSEKKII-GSLTIGF--PP-I-VESYTSN---VTLDRP 114 (209)
Q Consensus 45 ~~~~~~~~I~~~~~~vf~vV~D--Ve~YpeFlP~c~~s~Vle~~~~~~~-a~l~v~~--~~-~-~~~~tsr---v~~~~~ 114 (209)
+.+..+..++++++++++++.| .+..++|-+.|.+++++++-++... ....... .+ + ...|... ..++.+
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 6699999999999999999999 8999999999999999998765332 3332211 11 2 2223222 112221
Q ss_pred C-eEEEEeecCc-------cc--ceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHH
Q psy15938 115 K-LIKANCFDGK-------LF--DHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAE 183 (209)
Q Consensus 115 ~-~I~~~~~~G~-------~F--~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~R 183 (209)
. .+...+++-+ .. ....|.|.++|.++ ++++|++++.+..++++. +..+.+.+........+++++++
T Consensus 126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~-~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~ 204 (206)
T cd08867 126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG-SPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKG 204 (206)
T ss_pred eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC-CCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHh
Confidence 1 1222333111 11 24568999999763 346799999999999988 77777777433344445555544
No 47
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.17 E-value=9.6e-05 Score=62.33 Aligned_cols=117 Identities=10% Similarity=-0.028 Sum_probs=82.3
Q ss_pred CCCCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEee--CCceeEEEEEEEec---
Q psy15938 39 DTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGF--PPIVESYTSNVTLD--- 112 (209)
Q Consensus 39 ~~~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~--~~~~~~~tsrv~~~--- 112 (209)
+-|+..+.++.+..++++++++.+++.|. +++|.+.|.+++++++.++ .......+.. ..-...|.....+.
T Consensus 46 ~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~ 123 (204)
T cd08908 46 SEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNL 123 (204)
T ss_pred CCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeC
Confidence 44688999999999999999999999988 8999999999999998664 3334433332 22244454442221
Q ss_pred CCCeE--EEEeec-------CcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 113 RPKLI--KANCFD-------GKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 113 ~~~~I--~~~~~~-------G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
+.+.+ ...+++ +--...+.|.|.|+|.++ ++|+|+|....++++-
T Consensus 124 ~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~---g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 124 PKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGS---GKSKLTYMCRIDLRGH 177 (204)
T ss_pred CCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCC---CcEEEEEEEEeCCCCC
Confidence 22222 222111 111346789999999874 6899999999999987
No 48
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.16 E-value=5.1e-05 Score=58.44 Aligned_cols=100 Identities=11% Similarity=0.166 Sum_probs=63.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCce-eEEEEE-EEecCCCeEEEEeec
Q psy15938 46 EYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIV-ESYTSN-VTLDRPKLIKANCFD 123 (209)
Q Consensus 46 ~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~-~~~tsr-v~~~~~~~I~~~~~~ 123 (209)
.++.++.|++|+++||++++|.++|++|.+... ... ..+......+. +.+.. ..+... ..+++++++.+....
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~--~~~~~~~g~~~--~~~~~~~~~~~~i~~~~p~~~l~~~~~~ 76 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPF--VVGEGATGEIT--YPGYEHGVFPVTVVEVDPPRRFSFRWHP 76 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCc--ccCCcceeEEe--cCCCCccceEEEEEEeCCCcEEEEEecC
Confidence 478899999999999999999999999999753 110 00111112222 22221 233344 345677888877543
Q ss_pred Cc--------ccceeeeEEEEEeCCCCCCCceEEEEEEE
Q psy15938 124 GK--------LFDHLVTMWRFHRGLEDVPQSCVIDFYME 154 (209)
Q Consensus 124 G~--------~F~~l~g~W~f~p~~~~~~~~T~V~f~l~ 154 (209)
+. .-.....+|.|++.+ ++|+|++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~----~gT~vt~~~~ 111 (145)
T cd08898 77 PAIDPGEDYSAEPSTLVEFTLEPIA----GGTLLTVTES 111 (145)
T ss_pred CCcccccccCCCCceEEEEEEEecC----CcEEEEEEEc
Confidence 31 011345789999976 5799999885
No 49
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.14 E-value=0.00012 Score=61.62 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=93.5
Q ss_pred CCCCCceEEEEEEEEc-CCHHHHHHHHhchhcccccCCCcceEEEEEecC-CeEEEEEEEeeCC--ceeEEEEE---EEe
Q psy15938 39 DTFSKKKEYLGRKLVG-YSREQMYEVVSDVENYKNFVPFCKKSVVTYKSE-KKIIGSLTIGFPP--IVESYTSN---VTL 111 (209)
Q Consensus 39 ~~~~~~~~~~~~~~I~-~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~-~~~~a~l~v~~~~--~~~~~tsr---v~~ 111 (209)
.-++....++....++ ++++++++++.|++.+++|.+.|.+ +++..+ +.....+.+.+.- -...|... ...
T Consensus 43 ~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~ 120 (207)
T cd08910 43 DEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYPFPLSNRDYVYIRQRRDL 120 (207)
T ss_pred cCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcCCCCCCceEEEEEEeccc
Confidence 3467778999899998 7999999999999999999999997 444433 3344455554332 23334322 112
Q ss_pred cCCC-eEEE---Eee--------cCcc-cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHH
Q psy15938 112 DRPK-LIKA---NCF--------DGKL-FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQME 177 (209)
Q Consensus 112 ~~~~-~I~~---~~~--------~G~~-F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml 177 (209)
+.+. .+.+ .+. +|-. .....|.|.|+|.++ ++|+++|....++++. +.-+.+.+.+......+
T Consensus 121 ~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~---~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l 197 (207)
T cd08910 121 DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK---KGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFL 197 (207)
T ss_pred cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC---CceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHH
Confidence 2222 2211 221 1200 236788999999864 6899999999999877 66677777555577777
Q ss_pred HHHHHHHH
Q psy15938 178 KAFFAEAE 185 (209)
Q Consensus 178 ~af~~RA~ 185 (209)
+.+++-|+
T Consensus 198 ~~l~ka~~ 205 (207)
T cd08910 198 KDMQKACQ 205 (207)
T ss_pred HHHHHHHh
Confidence 77766654
No 50
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=98.09 E-value=0.00015 Score=62.33 Aligned_cols=142 Identities=9% Similarity=-0.070 Sum_probs=94.2
Q ss_pred ceEEEEEEEEc-CCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeC--CceeEEEEEEEe--------
Q psy15938 44 KKEYLGRKLVG-YSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFP--PIVESYTSNVTL-------- 111 (209)
Q Consensus 44 ~~~~~~~~~I~-~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~--~~~~~~tsrv~~-------- 111 (209)
+..+.....++ ++++++++++.|.+.+++|...|.+.+++++.++ .......+... .-...+.....+
T Consensus 51 ~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~ 130 (235)
T cd08872 51 LDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEE 130 (235)
T ss_pred eeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccc
Confidence 33688888888 9999999999999999999999999999988653 22222222211 111112111111
Q ss_pred --------------c----C--CCeEEEEeec----CcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhc
Q psy15938 112 --------------D----R--PKLIKANCFD----GKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYG 166 (209)
Q Consensus 112 --------------~----~--~~~I~~~~~~----G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~ 166 (209)
. | ++.|++.... +.....-.|.|.|+|.+ ++|+|+|....++++- ++-+.+
T Consensus 131 ~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~----~~~~ity~~~~dPgG~iP~wvvn 206 (235)
T cd08872 131 PNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDN----ILCKITYVANVNPGGWAPASVLR 206 (235)
T ss_pred ccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCC----CeEEEEEEEEeCCCCCccHHHHH
Confidence 1 1 1344444321 21223334779999832 6899999999999887 677777
Q ss_pred chhhhhHHHHHHHHHHHHHHHhC
Q psy15938 167 NRVLLTSMQMEKAFFAEAEMRYG 189 (209)
Q Consensus 167 ~~~~~~~~~ml~af~~RA~~ly~ 189 (209)
.+.+..+.+.|+.|..-+...+.
T Consensus 207 ~~~k~~~P~~l~~~~~~~~~~~~ 229 (235)
T cd08872 207 AVYKREYPKFLKRFTSYVQEKTK 229 (235)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC
Confidence 77666688888888888776554
No 51
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.06 E-value=0.00032 Score=54.52 Aligned_cols=102 Identities=7% Similarity=-0.004 Sum_probs=65.2
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCC----cceEEEEEecCCeEEEEEEEeeCCceeE-EEEEEEecCCCeEEEEe
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPF----CKKSVVTYKSEKKIIGSLTIGFPPIVES-YTSNVTLDRPKLIKANC 121 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~----c~~s~Vle~~~~~~~a~l~v~~~~~~~~-~tsrv~~~~~~~I~~~~ 121 (209)
+..++.|++|+++||+.+.|=+...+|++. +....+--+.++.+...+.. -.|.... .-.-..++|+++|.+..
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~-~~g~~~~~~g~v~e~~p~~~l~~t~ 80 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHG-PDGTDYPNRIVFLEIEPPERIVYDH 80 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEEC-CCCCEecceEEEEEEcCCCEEEEEe
Confidence 567899999999999999999999999752 11222222334554444422 1222111 12335677888998886
Q ss_pred ecCcccceeeeEEEEEeCCCCCCCceEEEEEEEE
Q psy15938 122 FDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEK 155 (209)
Q Consensus 122 ~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~f 155 (209)
..++ ....-+|.|++.+ ++|+|++...+
T Consensus 81 ~~~~--~~~~v~~~~~~~~----~gT~ltl~~~~ 108 (139)
T cd08894 81 GSGP--PRFRLTVTFEEQG----GKTRLTWRQVF 108 (139)
T ss_pred ccCC--CcEEEEEEEEECC----CCEEEEEEEEc
Confidence 4442 1234678999875 58999988753
No 52
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.98 E-value=0.001 Score=51.87 Aligned_cols=105 Identities=8% Similarity=-0.015 Sum_probs=67.2
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCC-----cceEEEEEecCCeEEEEEEEeeCCceeEEEEE-EEecCCCeEEEE
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPF-----CKKSVVTYKSEKKIIGSLTIGFPPIVESYTSN-VTLDRPKLIKAN 120 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~-----c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsr-v~~~~~~~I~~~ 120 (209)
+..++.+++|+++||+.+.|=+...+|+.. |....+--+.++.....+.-. ++........ ..+++|++|.++
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~-~g~~~~~~g~~~~~~p~~~l~~t 80 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPK-GGPEITVEARYHDIVPDERIVYT 80 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECC-CCCEEeeeEEEEEecCCceEEEE
Confidence 566788999999999999999999999864 233333334455555544322 2332233333 456788888766
Q ss_pred ee--c-CcccceeeeEEEEEeCCCCCCCceEEEEEEEEE
Q psy15938 121 CF--D-GKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKA 156 (209)
Q Consensus 121 ~~--~-G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fe 156 (209)
.. . +.+-....-+|.|++.+ ++|+|++.+..-
T Consensus 81 ~~~~~~~~~~~~s~v~~~l~~~~----~gT~l~~~~~~~ 115 (143)
T cd08900 81 YTMHIGGTLLSASLATVEFAPEG----GGTRLTLTEQGA 115 (143)
T ss_pred EeeccCCccccceEEEEEEEECC----CCEEEEEEEEEe
Confidence 32 2 21122234578888875 589999988753
No 53
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=97.96 E-value=0.0055 Score=50.21 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=100.5
Q ss_pred eeeeecCCCC-CceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEe-cCCeEEEEEEEeeCC---c-eeEEE
Q psy15938 33 SFFNIADTFS-KKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYK-SEKKIIGSLTIGFPP---I-VESYT 106 (209)
Q Consensus 33 ~~~~~~~~~~-~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~-~~~~~~a~l~v~~~~---~-~~~~t 106 (209)
.+....+.+. ....+.....+++++++++..+.|... +|-+.|.++++++. +++............ + ...|.
T Consensus 33 ~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv 110 (206)
T PF01852_consen 33 YYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFV 110 (206)
T ss_dssp EEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEE
T ss_pred EEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEE
Confidence 3344444333 788999999999999988888888877 99999999999998 444444444433322 2 33333
Q ss_pred E-EEEec-CCCe--EEEEeecCcc--------c--ceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhh
Q psy15938 107 S-NVTLD-RPKL--IKANCFDGKL--------F--DHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLL 171 (209)
Q Consensus 107 s-rv~~~-~~~~--I~~~~~~G~~--------F--~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~ 171 (209)
. +.... .++. |...+++.+. . ..+.+.|.|+|.++ +.|+|++....++++. +..+.+.+.+.
T Consensus 111 ~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~---~~~~vt~~~~~D~~G~iP~~~~n~~~~~ 187 (206)
T PF01852_consen 111 FLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD---GRTRVTYVSQVDPKGWIPSWLVNMVVKS 187 (206)
T ss_dssp EEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT---CEEEEEEEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC---CCceEEEEEEECCCCCChHHHHHHHHHH
Confidence 2 22222 3332 3333332211 2 25679999999985 5699999999999998 77777777666
Q ss_pred hHHHHHHHHHHHHHH
Q psy15938 172 TSMQMEKAFFAEAEM 186 (209)
Q Consensus 172 ~~~~ml~af~~RA~~ 186 (209)
....+++.+.+++++
T Consensus 188 ~~~~~~~~~~~~~~~ 202 (206)
T PF01852_consen 188 QPPNFLKNLRKALKK 202 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 677777777777765
No 54
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.88 E-value=0.00092 Score=51.52 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=64.5
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCc-----ceEEEEEecCCeEEEEEEEeeCCceeEEEEE-EEecCCCeEEEE
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFC-----KKSVVTYKSEKKIIGSLTIGFPPIVESYTSN-VTLDRPKLIKAN 120 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c-----~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsr-v~~~~~~~I~~~ 120 (209)
+..++.+++|+++||+.+.|=+.+.+|++.. ...+.--+.|+.+...+...-++....+... ..++++++|.++
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~l~~~ 81 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKLIEYT 81 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCEEEEE
Confidence 4678899999999999999999999997652 2223322445555555432111111112222 367788999998
Q ss_pred eecCcccceeeeEEEEEeCCCCCCCceEEEEE
Q psy15938 121 CFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFY 152 (209)
Q Consensus 121 ~~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~ 152 (209)
..+| ...+|.|++.+ ++|+|++.
T Consensus 82 ~~~~-----~~v~~~l~~~~----~gT~l~l~ 104 (133)
T cd08897 82 MEDG-----REVEVEFTEEG----DGTKVVET 104 (133)
T ss_pred cCCC-----CEEEEEEEECC----CCEEEEEE
Confidence 7554 24689999975 57998876
No 55
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.84 E-value=0.00095 Score=52.27 Aligned_cols=103 Identities=7% Similarity=-0.016 Sum_probs=65.3
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCC----cceEEEEEecCCeEEEEEEEeeCCceeE-EEEEEEecCCCeEEEEe
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPF----CKKSVVTYKSEKKIIGSLTIGFPPIVES-YTSNVTLDRPKLIKANC 121 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~----c~~s~Vle~~~~~~~a~l~v~~~~~~~~-~tsrv~~~~~~~I~~~~ 121 (209)
+..++.|++|+++||+.+.|=+.+.+|++. |....+--+.++.....+. +..|.... +-.-.+++|+++|.+..
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~-~~~g~~~~~~g~v~~i~p~~~l~~t~ 80 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMR-GPDGEEFPNPGCFLEVVPGERLVFTD 80 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEE-CCCCCEecceEEEEEEeCCCEEEEEE
Confidence 567889999999999999999999999873 2223333344555544433 22232222 23345677888887763
Q ss_pred e--cC-cccc--eeeeEEEEEeCCCCCCCceEEEEEEE
Q psy15938 122 F--DG-KLFD--HLVTMWRFHRGLEDVPQSCVIDFYME 154 (209)
Q Consensus 122 ~--~G-~~F~--~l~g~W~f~p~~~~~~~~T~V~f~l~ 154 (209)
. ++ .+-. ....+|.|++.+ ++|+|++...
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~~----~gT~Ltl~~~ 114 (146)
T cd08896 81 ALTPGWRPAEKPFMTAIITFEDEG----GGTRYTARAR 114 (146)
T ss_pred eecCCcCCCCCCcEEEEEEEEecC----CcEEEEEEEE
Confidence 2 21 1111 145689999976 5899988653
No 56
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.84 E-value=0.0023 Score=51.35 Aligned_cols=136 Identities=15% Similarity=0.075 Sum_probs=95.3
Q ss_pred eEEEEEEEEcCCHHHHHHHHh-chhcccccCCCc-ceEEEEEecCC-e-EEEEEEEeeCCceeEEEEEEEecC--CCeEE
Q psy15938 45 KEYLGRKLVGYSREQMYEVVS-DVENYKNFVPFC-KKSVVTYKSEK-K-IIGSLTIGFPPIVESYTSNVTLDR--PKLIK 118 (209)
Q Consensus 45 ~~~~~~~~I~~~~~~vf~vV~-DVe~YpeFlP~c-~~s~Vle~~~~-~-~~a~l~v~~~~~~~~~tsrv~~~~--~~~I~ 118 (209)
..+..+..+.+||+++|++.. .-.-.|+-+|.+ +++++++-+++ . .+-.+..+.++-...+..+++..+ ++.+.
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~ 83 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTIT 83 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEE
Confidence 467788899999999999999 555678888765 55667777665 3 677778877777788888888655 36899
Q ss_pred EEeecCccc---ceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcchhhhhcchhhhhHHHHHHHHHHHH
Q psy15938 119 ANCFDGKLF---DHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQMEKAFFAEA 184 (209)
Q Consensus 119 ~~~~~G~~F---~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p~~~~~~~~~~~~~~~ml~af~~RA 184 (209)
+..++|++. +.+...=++.|.++ ++|.+..+++|+..+...+.-... .+.+..|.++.++-.
T Consensus 84 y~viEGd~l~~~~~~~~~~~~~~~~~---g~~v~k~t~~Ye~~~~~~~~p~~~-~~~~~~~~K~ieayL 148 (151)
T PF00407_consen 84 YTVIEGDVLGDYKSFKSTIQKIPKGD---GGCVVKWTIEYEKKGEDVPPPEKY-LDFAVGMFKAIEAYL 148 (151)
T ss_dssp EEEEEETTGTTTEEEEEEEEEEEETT---SCEEEEEEEEEEESSTSCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEeccccccEEEEEEEEEecCCCC---CceEEEEEEEEEecCCCCCCcHHH-HHHHHHHHHHHHHHH
Confidence 999999854 46666666666553 579999999999988722111111 122566677666543
No 57
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.77 E-value=0.0018 Score=50.74 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=65.2
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcc-eEEEEE---ecCCeEEEEEEEee------CCceeEE-EEEEEecCCC
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCK-KSVVTY---KSEKKIIGSLTIGF------PPIVESY-TSNVTLDRPK 115 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~-~s~Vle---~~~~~~~a~l~v~~------~~~~~~~-tsrv~~~~~~ 115 (209)
+..++.|++|+++||+.++|-+...+|+++-. .+.+.+ +.++.+...+...- .+..... ..-..+++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~ 81 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE 81 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence 56788999999999999999999999987532 222222 22344444443221 1111122 2334567888
Q ss_pred eEEEEee--cCcccceeeeEEEEEeCCCCCCCceEEEEEEE
Q psy15938 116 LIKANCF--DGKLFDHLVTMWRFHRGLEDVPQSCVIDFYME 154 (209)
Q Consensus 116 ~I~~~~~--~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~ 154 (209)
+|.+... ++..-....-+|.|++.+ ++|+|++.+.
T Consensus 82 ~i~~~~~~~~~~~~~~~~v~~~~~~~~----~~T~lt~~~~ 118 (146)
T cd08895 82 RIVYTDVFDDPSLSGEMTMTWTLSPVS----GGTDVTIVQS 118 (146)
T ss_pred EEEEEEEecCCCCCceEEEEEEEEecC----CCEEEEEEEe
Confidence 8888742 221112346789999876 5799988885
No 58
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.63 E-value=0.0031 Score=49.31 Aligned_cols=104 Identities=9% Similarity=-0.093 Sum_probs=65.7
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcc----eEEEEEecCCeEEEEEEEeeCCceeEEE-EEEEecCCCeEEEEe
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCK----KSVVTYKSEKKIIGSLTIGFPPIVESYT-SNVTLDRPKLIKANC 121 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~----~s~Vle~~~~~~~a~l~v~~~~~~~~~t-srv~~~~~~~I~~~~ 121 (209)
+..++.+++|+++||+.+.|=+.+.+|+..-- .+++--+.++.+...+... +|...... .-.+++|+++|.+.-
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~-~g~~~~~~g~~~ei~p~~~l~~t~ 80 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAP-DGEEMGFHGVYHEVTPPERIVQTE 80 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECC-CCCEecceEEEEEEcCCCEEEEEe
Confidence 56789999999999999999999999987531 2222223455555554321 12211222 334577788887753
Q ss_pred e-cCcccceeeeEEEEEeCCCCCCCceEEEEEEEE
Q psy15938 122 F-DGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEK 155 (209)
Q Consensus 122 ~-~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~f 155 (209)
. ++.+-....-+|.|++.+ ++|++++...|
T Consensus 81 ~~~~~~~~~s~v~~~l~~~~----~gT~l~l~~~~ 111 (142)
T cd07826 81 EFEGLPDGVALETVTFTELG----GRTRLTATSRY 111 (142)
T ss_pred EecCCCCCceEEEEEEEECC----CCEEEEEEEEe
Confidence 2 221123456689999976 58999887543
No 59
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.57 E-value=0.0028 Score=47.27 Aligned_cols=119 Identities=10% Similarity=0.012 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEE-EEecCCCeEEEEee--cCccccee
Q psy15938 54 GYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSN-VTLDRPKLIKANCF--DGKLFDHL 130 (209)
Q Consensus 54 ~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsr-v~~~~~~~I~~~~~--~G~~F~~l 130 (209)
+||+++||++++|-+.+.+| -.+....+--+.|+.+.. .+..+....+..+ ..+.++++|.+... +.+.....
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W-~~~~~~~~~~~~Gg~~~~---~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~~ 76 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW-FTTSEAEMDFRPGGSFRF---MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPES 76 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH-SEEEEEEEECSTTEEEEE---EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEEE
T ss_pred CcCHHHHHHHHCCHhHHhhc-cCCCcceeeeecCCEEEE---EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCce
Confidence 58999999999999999999 112222222233444444 2244444445543 45677888887743 32224578
Q ss_pred eeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHH
Q psy15938 131 VTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEA 184 (209)
Q Consensus 131 ~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA 184 (209)
..+|.|++.+ ++|+|.+.++--.... ........ -..++..+++-+
T Consensus 77 ~v~~~~~~~~----~~T~l~~~~~~~~~~~~~~~~~~~g----w~~~l~~L~~~l 123 (124)
T PF08327_consen 77 RVTFEFEEEG----GGTRLTLTHSGFPDDDEEEEGMEQG----WEQMLDRLKAYL 123 (124)
T ss_dssp EEEEEEEEET----TEEEEEEEEEEEHSHHHHHHCHHHH----HHHHHHHHHHHH
T ss_pred EEEEEEEEcC----CcEEEEEEEEcCCccHHHHHHHHHH----HHHHHHHHHHHh
Confidence 8899999954 6899999983222221 22213334 555566555543
No 60
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.39 E-value=0.019 Score=48.45 Aligned_cols=117 Identities=6% Similarity=-0.088 Sum_probs=80.4
Q ss_pred CCCCCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEEEEEEeeC-Cc-eeEEEEEEEec---
Q psy15938 39 DTFSKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIGSLTIGFP-PI-VESYTSNVTLD--- 112 (209)
Q Consensus 39 ~~~~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a~l~v~~~-~~-~~~~tsrv~~~--- 112 (209)
.-++..+..+.+..|++++++|...|.+ ..++|-..|.+++++++-+. ..+....+... ++ ...|.....+.
T Consensus 46 ~d~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~ 123 (205)
T cd08909 46 GDGNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDL 123 (205)
T ss_pred CCCCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEEEEEEEEEEeC
Confidence 3467889999999999999999888866 79999999999999998664 22222222211 11 45555555442
Q ss_pred CCC--eEEEEeecCc---c-----cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 113 RPK--LIKANCFDGK---L-----FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 113 ~~~--~I~~~~~~G~---~-----F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
+.. .|...+++.+ + ...+.|.|.++|.++ ++|+|++....++++-
T Consensus 124 ~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~---g~trvt~i~~vDpkG~ 178 (205)
T cd08909 124 PKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS---GKSRLTHICRVDLKGH 178 (205)
T ss_pred CCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC---CCEEEEEEEEecCCCC
Confidence 222 2233333331 1 234678999999974 6899999999999987
No 61
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.27 E-value=0.0083 Score=46.43 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=63.1
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEeecCcc
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGKL 126 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~~G~~ 126 (209)
+..++.|++|+++||+.+.|-+...+|++.....++ +.|+.+...... +++ . -...-..++++++|.++-..+++
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~-~~~-~-~~g~~~~~~p~~~l~~~w~~~~~ 76 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEM-YGA-S-VPVNVLEIEPNKRIVIEWGDPGE 76 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEc-cCC-c-eEEEEEEEcCCCEEEEEecCCCC
Confidence 467888999999999999999999998655332221 233443332222 122 1 11223456788899887654321
Q ss_pred cceeeeEEEEEeCCCCCCCceEEEEEEE
Q psy15938 127 FDHLVTMWRFHRGLEDVPQSCVIDFYME 154 (209)
Q Consensus 127 F~~l~g~W~f~p~~~~~~~~T~V~f~l~ 154 (209)
...-+|.|++.++ ++|+|++...
T Consensus 77 --~s~v~~~l~~~~~---ggT~ltl~~~ 99 (136)
T cd08901 77 --PTTVEWTFEELDD---GRTFVTITES 99 (136)
T ss_pred --CEEEEEEEEECCC---CcEEEEEEEC
Confidence 2446899999762 5799998874
No 62
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.23 E-value=0.015 Score=45.58 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=62.7
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCc--------ceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEE
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFC--------KKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIK 118 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c--------~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~ 118 (209)
++.++.|+||+++||+.+.| ...+|++.- ..+++--+.++.+... +.+|-...+-.-..++++++|.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~~---~~~g~~~~~g~v~~v~p~~~l~ 76 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYEI---GEDGTECEWGTVLAWEPPSRLV 76 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEEe---cCCCcEeceEEEEEEcCCCEEE
Confidence 67899999999999999999 577777532 2233333444444321 1123222244445677888887
Q ss_pred EEee-c--Cccc--ceeeeEEEEEeCCCCCCCceEEEEEEEE
Q psy15938 119 ANCF-D--GKLF--DHLVTMWRFHRGLEDVPQSCVIDFYMEK 155 (209)
Q Consensus 119 ~~~~-~--G~~F--~~l~g~W~f~p~~~~~~~~T~V~f~l~f 155 (209)
++-. . +++- ....-+|.|++.++ ++|+|++.+..
T Consensus 77 ~tw~~~~~~~~~~~~~t~vt~~l~~~~~---~gT~ltl~~~~ 115 (149)
T cd08891 77 FTWQINADWRPDPDKASEVEVRFEAVGA---EGTRVELEHRG 115 (149)
T ss_pred EEeccCCCcCcCCCCceEEEEEEEECCC---CCeEEEEEEec
Confidence 7643 1 1111 13457899999762 47999998865
No 63
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=97.15 E-value=0.042 Score=46.28 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=89.7
Q ss_pred CceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEe--e-CC-c-eeEEEEEEEe---cCC
Q psy15938 43 KKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIG--F-PP-I-VESYTSNVTL---DRP 114 (209)
Q Consensus 43 ~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~--~-~~-~-~~~~tsrv~~---~~~ 114 (209)
..+.+..+..++++++++|+++.|.+.=.+|=+-|.+.+++++-++....-.... + ++ + ...|.....+ +.+
T Consensus 44 ~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~ 123 (204)
T cd08904 44 HGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGN 123 (204)
T ss_pred CceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCC
Confidence 3478999999999999999999999999999999999999998654332222222 1 12 1 2333333222 221
Q ss_pred CeEE-EEeecCc-------cc--ceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHH
Q psy15938 115 KLIK-ANCFDGK-------LF--DHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAE 183 (209)
Q Consensus 115 ~~I~-~~~~~G~-------~F--~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~R 183 (209)
..|. ..+++-+ .. ...-|-|-+.|+++ ++++|+++..+..++++. +..+.+++ ....+-.|..-
T Consensus 124 ~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~-~p~~t~l~~~~~~DlkG~lP~~vv~~~----~~~~~~~f~~~ 198 (204)
T cd08904 124 MNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE-NPAYSKLVMFVQPELRGNLSRSVIEKT----MPTNLVNLILD 198 (204)
T ss_pred EEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC-CCCceEEEEEEEeCCCCCCCHHHHHHH----hHHHHHHHHHH
Confidence 1121 1222111 01 12247899999973 456899999999999988 77777877 55555556544
Q ss_pred HH
Q psy15938 184 AE 185 (209)
Q Consensus 184 A~ 185 (209)
++
T Consensus 199 ~~ 200 (204)
T cd08904 199 AK 200 (204)
T ss_pred HH
Confidence 43
No 64
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.78 E-value=0.12 Score=41.42 Aligned_cols=131 Identities=9% Similarity=-0.060 Sum_probs=79.7
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCc----ceEEEEEecCCeEEEEEEE--ee----------CCceeEEEEEEE
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFC----KKSVVTYKSEKKIIGSLTI--GF----------PPIVESYTSNVT 110 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c----~~s~Vle~~~~~~~a~l~v--~~----------~~~~~~~tsrv~ 110 (209)
+..+..+++|+++||.++.|=+-|.+-+-.+ ..+.-++.+++.+.+.+.- .. .+-..+++-..+
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~ 80 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTET 80 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEE
Confidence 3567889999999999999976555433332 3344455555544443332 21 111334444455
Q ss_pred ecC--CCe--EEEE-eecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHH
Q psy15938 111 LDR--PKL--IKAN-CFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEA 184 (209)
Q Consensus 111 ~~~--~~~--I~~~-~~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA 184 (209)
|.+ +.. ..+. .+.|.|. .+.|+=++.+.+ ++|+++++.+++.+.| +|.-+.+++ ++.+.+++...+
T Consensus 81 w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~----~gt~~~~~g~v~v~VPlvGgkiE~~v---~~~~~~~~~~e~ 152 (159)
T PF10698_consen 81 WTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPDG----GGTRLTVEGEVKVKVPLVGGKIEKAV---AENLRKLLEAEQ 152 (159)
T ss_pred EecCCCCeEEEEEEEEecCceE-EEEEEEEEecCC----CCEEEEEEEEEEEEEccccHHHHHHH---HHHHHHHHHHHH
Confidence 533 222 2222 3445445 789999999965 6899999999999999 554444442 555555665554
Q ss_pred H
Q psy15938 185 E 185 (209)
Q Consensus 185 ~ 185 (209)
+
T Consensus 153 ~ 153 (159)
T PF10698_consen 153 E 153 (159)
T ss_pred H
Confidence 4
No 65
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=96.61 E-value=0.083 Score=40.34 Aligned_cols=95 Identities=16% Similarity=-0.019 Sum_probs=60.4
Q ss_pred EEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEee--cC
Q psy15938 47 YLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCF--DG 124 (209)
Q Consensus 47 ~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~--~G 124 (209)
+..++.+++|+++||+.+.|=+...+|+... ..+--+.++.+... -+.+ ...-..++++++|.+.-. +.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~--~~~d~~~GG~~~~~----~g~~---~g~~~~i~p~~~l~~~w~~~~~ 72 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSP--AKVDAKVGGKFSLF----GGNI---TGEFVELVPGKKIVQKWRFKSW 72 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCC--ceecCCCCCEEEEe----CCce---EEEEEEEcCCCEEEEEEEcCCC
Confidence 5678999999999999999999999987532 22222233343221 1111 223355678888876532 22
Q ss_pred cccceeeeEEEEEeCCCCCCCceEEEEEEE
Q psy15938 125 KLFDHLVTMWRFHRGLEDVPQSCVIDFYME 154 (209)
Q Consensus 125 ~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~ 154 (209)
+.-....-+|.|++.+ ++|+|++...
T Consensus 73 ~~~~~s~v~~~l~~~~----~gT~ltl~~~ 98 (126)
T cd08892 73 PEGHYSTVTLTFTEKD----DETELKLTQT 98 (126)
T ss_pred CCCCcEEEEEEEEECC----CCEEEEEEEE
Confidence 1012356799999975 5899988875
No 66
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.51 E-value=0.11 Score=41.65 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=48.3
Q ss_pred cCCHHHHHH-HHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEeecCc
Q psy15938 54 GYSREQMYE-VVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFDGK 125 (209)
Q Consensus 54 ~~~~~~vf~-vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~~G~ 125 (209)
..+.+|||. ++.-+++=-.|+|++.+++|++++++.+.=++.+ ++ .....++++.++.+|.|...+|.
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~f--g~--~~v~E~v~~~~~~~V~f~~~~Gs 85 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTF--GG--ATVRERVTLYPPERVDFAQHDGS 85 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEE--TT--EEEEEEEEEETTTEEEESSSBEE
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEE--CC--cEEEEEEEEeCCcEEEEEcCCCC
Confidence 456789997 5556677778999999999999998877666666 33 47788999999999999777774
No 67
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.082 Score=41.96 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=62.2
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEE-EecCCCeEEEEe-
Q psy15938 44 KKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNV-TLDRPKLIKANC- 121 (209)
Q Consensus 44 ~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv-~~~~~~~I~~~~- 121 (209)
...+..+++|++|+++||+.+.|=+..++|+. -...+.--+.++....++....+.. ..+...+ ..+++++|.+.-
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~~~~v~p~~rIv~tw~ 84 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGEYLEVVPPERIVFTWD 84 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceEEEEEcCCcEEEEEec
Confidence 35789999999999999999999999999998 2222222223334444444333322 3444443 456788887762
Q ss_pred -e-cCcccceeeeEEEEEeCCC
Q psy15938 122 -F-DGKLFDHLVTMWRFHRGLE 141 (209)
Q Consensus 122 -~-~G~~F~~l~g~W~f~p~~~ 141 (209)
. ++.++..-..+|.|.+...
T Consensus 85 ~~~~~~~~~~~~v~~~l~~~~~ 106 (149)
T COG3832 85 FDEDGEPFLKSLVTITLTPEDD 106 (149)
T ss_pred cCCCCCcccCceEEEEEEEecC
Confidence 2 2223446778999999764
No 68
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.47 Score=37.75 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=81.3
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC----eEEEEEEEeeCCc--eeEEEEEEEe---cCC
Q psy15938 44 KKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK----KIIGSLTIGFPPI--VESYTSNVTL---DRP 114 (209)
Q Consensus 44 ~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~----~~~a~l~v~~~~~--~~~~tsrv~~---~~~ 114 (209)
|.++.....|.+|.|.||+-=+-.++....-|... |+-+.++ ..+..+.+..-|+ ..+|+++.+. +++
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 56788889999999999999999999887777766 3333332 2333333333333 4699999887 333
Q ss_pred CeEEEEeecCcccceeeeEEE----EEeCCCCCCCceEEEEEEEEEeCcc--hhhhhcch
Q psy15938 115 KLIKANCFDGKLFDHLVTMWR----FHRGLEDVPQSCVIDFYMEKAFFAE--AEMRYGNR 168 (209)
Q Consensus 115 ~~I~~~~~~G~~F~~l~g~W~----f~p~~~~~~~~T~V~f~l~fef~~p--~~~~~~~~ 168 (209)
.+-.=.+++| ||..+ .|+ |.+.+ ++|.+.=++.|+++.. .+++-.+.
T Consensus 78 ~~FtDv~i~g-Pfp~~--~WrHtH~F~~eg----g~TvliD~Vsye~p~g~~~~~~g~~l 130 (153)
T COG4276 78 SRFTDVCITG-PFPAL--NWRHTHNFVDEG----GGTVLIDSVSYELPAGTLTGMFGYRL 130 (153)
T ss_pred ceeeeeeecC-Cccce--eeEEEeeeecCC----CcEEEEeeEEeeccCcceechhhhhh
Confidence 4555568999 69997 565 56654 6898888999999887 66666666
No 69
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.87 E-value=0.59 Score=37.31 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=52.4
Q ss_pred CCHHHHHH-HHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEeec
Q psy15938 55 YSREQMYE-VVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCFD 123 (209)
Q Consensus 55 ~~~~~vf~-vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~~ 123 (209)
...+|+|. ++.-+++=..|+|++.+++|++++++.+.=+++++ + .....++++.++.+|.|.+..
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~--~--~~v~e~vt~~~~~~v~f~~~~ 82 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFG--P--AKIRETVTLEPPSRVHFLQAD 82 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEEC--C--ceEEEEEEecCCcEEEEEecC
Confidence 67889996 66778888889999999999999887555445544 4 355788899999999999888
No 70
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=95.50 E-value=0.14 Score=39.73 Aligned_cols=91 Identities=13% Similarity=-0.016 Sum_probs=55.0
Q ss_pred EcCCHHHHHHHHhchhcccccCCCcceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEEee--cCccccee
Q psy15938 53 VGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKANCF--DGKLFDHL 130 (209)
Q Consensus 53 I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~~~--~G~~F~~l 130 (209)
+++|+++||+.+.|=+...+|.-. ...++--+.++.+.... +.+. -.-+++++|++|.++-. +.++-...
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~~~~---G~~~ev~pp~rlv~tw~~~~~~~~~~s 72 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----GSVE---GEFTELEKPKKIVQKWRFRDWEEDVYS 72 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----CceE---EEEEEEcCCCEEEEEEecCCCCCCCce
Confidence 479999999999999999988421 12222223334433211 1221 13356778888876632 21111124
Q ss_pred eeEEEEEeCCCCCCCceEEEEEEE
Q psy15938 131 VTMWRFHRGLEDVPQSCVIDFYME 154 (209)
Q Consensus 131 ~g~W~f~p~~~~~~~~T~V~f~l~ 154 (209)
.-+|.|++.++ ++|+|++.+.
T Consensus 73 ~vt~~~~~~~~---g~T~lt~~~~ 93 (132)
T PTZ00220 73 KVTIEFRAVEE---DHTELKLTQT 93 (132)
T ss_pred EEEEEEEeCCC---CcEEEEEEEe
Confidence 57899999652 5799998886
No 71
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=95.32 E-value=0.46 Score=40.15 Aligned_cols=138 Identities=7% Similarity=0.023 Sum_probs=85.4
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHhchhcccccCCCcceEEEEEecCC-eEEE-EEEEeeCCc---eeEEEEEEEe-cC-C
Q psy15938 42 SKKKEYLGRKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEK-KIIG-SLTIGFPPI---VESYTSNVTL-DR-P 114 (209)
Q Consensus 42 ~~~~~~~~~~~I~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~~-~~~a-~l~v~~~~~---~~~~tsrv~~-~~-~ 114 (209)
...+.|+.+..|+..++++++.|.+...=.+|=+.+++.+|+++-++ .+.. ..+.+..+. ...|..-... .. +
T Consensus 44 f~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d 123 (202)
T cd08902 44 FGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYED 123 (202)
T ss_pred CCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCC
Confidence 34568999999999999999999998888999999999999987654 3332 344443322 2222221111 11 1
Q ss_pred CeEEE-EeecC---c--ccc--eeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc-hhhhhcchhhhhHHHHHHHHHHHH
Q psy15938 115 KLIKA-NCFDG---K--LFD--HLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE-AEMRYGNRVLLTSMQMEKAFFAEA 184 (209)
Q Consensus 115 ~~I~~-~~~~G---~--~F~--~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p-~~~~~~~~~~~~~~~ml~af~~RA 184 (209)
..+.. .+.+. + ..+ ..=+.|-+.|+++ ++..|.++..+..++++- +..+.+++ ..+.+-.|..-.
T Consensus 124 ~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~-~p~k~~~t~~lq~DLkG~LPqsiIdq~----~~~~~~~F~~~L 197 (202)
T cd08902 124 GLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKD-NPSHSLLTGYIQTDLRGMLPQSAVDTA----MASTLVNFYSDL 197 (202)
T ss_pred CeEEEEeeecCCCCCCCeEeecccccEEEEEECCC-CCCceEEEEEEEecCCCCccHHHHHHH----hhHHHHHHHHHH
Confidence 22211 11111 0 011 1235799999874 456677777888888877 67777777 444444444433
No 72
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=87.26 E-value=9.8 Score=37.88 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=70.3
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhchh-cccccCCCcceEEEEEecCCeE-EE--EEEEee-CCc--eeEEEEEEEecC--C
Q psy15938 44 KKEYLGRKLVGYSREQMYEVVSDVE-NYKNFVPFCKKSVVTYKSEKKI-IG--SLTIGF-PPI--VESYTSNVTLDR--P 114 (209)
Q Consensus 44 ~~~~~~~~~I~~~~~~vf~vV~DVe-~YpeFlP~c~~s~Vle~~~~~~-~a--~l~v~~-~~~--~~~~tsrv~~~~--~ 114 (209)
.+.+...-+|++++++||++|.+++ .=.+|=.-+.+.+|+++-++.. .. .++-++ .++ ...|.-...+.+ +
T Consensus 226 ~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eD 305 (719)
T PLN00188 226 SRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD 305 (719)
T ss_pred CceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCC
Confidence 4678888999999999999999888 5567899999999998865432 22 222122 111 111222111211 1
Q ss_pred C--eEEEEeecCc---c----cc--eeeeEEEEEeCCCC-CCCceEEEEEEEEEeCcc
Q psy15938 115 K--LIKANCFDGK---L----FD--HLVTMWRFHRGLED-VPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 115 ~--~I~~~~~~G~---~----F~--~l~g~W~f~p~~~~-~~~~T~V~f~l~fef~~p 160 (209)
. .|...+++-+ | .+ -.-|-|.+.|+... .+..|.|..-+..++++=
T Consensus 306 GsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW 363 (719)
T PLN00188 306 GSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGW 363 (719)
T ss_pred CcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcc
Confidence 2 1222221110 0 11 12478999997531 235799999999999984
No 73
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=73.87 E-value=37 Score=25.87 Aligned_cols=95 Identities=13% Similarity=0.013 Sum_probs=53.4
Q ss_pred EEEEEcCCHHHHHHHHh-----chhcccccCCCc---ceEEEEEecCCeEEEEEEEeeCCceeEEEEEEEecCCCeEEEE
Q psy15938 49 GRKLVGYSREQMYEVVS-----DVENYKNFVPFC---KKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPKLIKAN 120 (209)
Q Consensus 49 ~~~~I~~~~~~vf~vV~-----DVe~YpeFlP~c---~~s~Vle~~~~~~~a~l~v~~~~~~~~~tsrv~~~~~~~I~~~ 120 (209)
.++.+++|++++|+.+. |+.....=-+.. ...+-...-++...+.+.| ..+.+|..-.+.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L~G~~Y~K~~~~~~~~~v~I------------t~~~~~~~Y~~~ 70 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQLKGFSYQKKFKNKREAKVKI------------TEYEPNKRYAAT 70 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhcCCcEEEEEcCCCCEEEEEE------------EEEcCCCEEEEE
Confidence 46779999999998765 444432211110 1111111111111222222 145566644443
Q ss_pred eecCcccceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 121 CFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 121 ~~~G~~F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
.... .....-.|.+++.++ +.|+|+|+=+++-.+.
T Consensus 71 ~~s~--~~~~~i~Y~i~~~~~---~~~~v~y~E~~~~~~~ 105 (120)
T PF11687_consen 71 FSSS--RGTFTISYEIEPLDD---GSIEVTYEEEYESKGF 105 (120)
T ss_pred EEec--CCCEEEEEEEEECCC---CcEEEEEEEEEccCCH
Confidence 3322 345788999999985 5699999988887665
No 74
>KOG2761|consensus
Probab=72.91 E-value=60 Score=27.82 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=76.6
Q ss_pred ceEEEEEEEE-cCCHHHHHHHHhchhcccccCCCcceEEEEEecC--CeEEEEEEEeeCCc---eeEEEEEEEecCC-C-
Q psy15938 44 KKEYLGRKLV-GYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSE--KKIIGSLTIGFPPI---VESYTSNVTLDRP-K- 115 (209)
Q Consensus 44 ~~~~~~~~~I-~~~~~~vf~vV~DVe~YpeFlP~c~~s~Vle~~~--~~~~a~l~v~~~~~---~~~~tsrv~~~~~-~- 115 (209)
+.+|....++ +++|+.++|+..|.|==++|=-.+.+.+.++++. +...+.+...|.-+ .+--..|..++.. +
T Consensus 52 ~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~ 131 (219)
T KOG2761|consen 52 LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKD 131 (219)
T ss_pred CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCce
Confidence 6677766665 9999999999999999999999999999999986 67888888777733 2333343444332 2
Q ss_pred eEEEE-eecC---c------ccceeeeEEEEE-eCCCCCCCceEEEEEEEEEeCcc
Q psy15938 116 LIKAN-CFDG---K------LFDHLVTMWRFH-RGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 116 ~I~~~-~~~G---~------~F~~l~g~W~f~-p~~~~~~~~T~V~f~l~fef~~p 160 (209)
.+.+. .++. + ....+...|.+. +...+.+.+|.+++.+--..+++
T Consensus 132 ~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~ 187 (219)
T KOG2761|consen 132 YYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGG 187 (219)
T ss_pred EEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCCCC
Confidence 22221 1111 0 023556789888 32222346788877775555555
No 75
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=65.58 E-value=89 Score=26.91 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=74.1
Q ss_pred CCceEEEEEEEEcCCHHHHHHHHhchhcccc-cCCCcceEEEEEec--C------C---eEEEEEEEe--eCCceeEEEE
Q psy15938 42 SKKKEYLGRKLVGYSREQMYEVVSDVENYKN-FVPFCKKSVVTYKS--E------K---KIIGSLTIG--FPPIVESYTS 107 (209)
Q Consensus 42 ~~~~~~~~~~~I~~~~~~vf~vV~DVe~Ype-FlP~c~~s~Vle~~--~------~---~~~a~l~v~--~~~~~~~~ts 107 (209)
...---+.+.+|...+..+-+++.|..+|.+ |=.-|.++.+++.- + + -+-+++.+- .-+..+-|..
T Consensus 57 ~~~eASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fL 136 (229)
T cd08875 57 FTTEASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFL 136 (229)
T ss_pred CeEEEEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEE
Confidence 3444556778899999999999999999999 55577888776542 1 1 245555543 2233677777
Q ss_pred EEEecC--CCeEEEE-eecCc---c-------cceeeeEEEEEeCCCCCCCceEEEEEEEEEeCcc
Q psy15938 108 NVTLDR--PKLIKAN-CFDGK---L-------FDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAE 160 (209)
Q Consensus 108 rv~~~~--~~~I~~~-~~~G~---~-------F~~l~g~W~f~p~~~~~~~~T~V~f~l~fef~~p 160 (209)
|+...- ...+.+. +.++. + .+.+-+-|-+++.++ |.|+|+.-=++++..-
T Consensus 137 Ryc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~n---G~SkVtwVeH~e~d~~ 199 (229)
T cd08875 137 RYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPN---GYSKVTWVEHVEVDEK 199 (229)
T ss_pred EEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCC---CceEEEEEEEEeccCC
Confidence 766443 2232222 34431 1 134556688888864 6799988766776653
No 76
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=42.97 E-value=2e+02 Score=24.09 Aligned_cols=98 Identities=9% Similarity=-0.008 Sum_probs=58.4
Q ss_pred cccccCCCcc--eEEEEEecCC-e----EEEEEEEeeCC--ceeEEEEEEE-ecC-C---CeEEEE--eec--------C
Q psy15938 69 NYKNFVPFCK--KSVVTYKSEK-K----IIGSLTIGFPP--IVESYTSNVT-LDR-P---KLIKAN--CFD--------G 124 (209)
Q Consensus 69 ~YpeFlP~c~--~s~Vle~~~~-~----~~a~l~v~~~~--~~~~~tsrv~-~~~-~---~~I~~~--~~~--------G 124 (209)
+=++|+|.|. ++++++..++ . ....+...+.. -...|.+... ... + ..|.+. ... |
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~ 143 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYEN 143 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCC
Confidence 3348999999 8999988753 2 44556666553 2566666655 321 2 223333 111 1
Q ss_pred cc-cceeee-EEEEEeCCCCCCCceEEEEEE--EEEeCcc-hhhhhcch
Q psy15938 125 KL-FDHLVT-MWRFHRGLEDVPQSCVIDFYM--EKAFFAE-AEMRYGNR 168 (209)
Q Consensus 125 ~~-F~~l~g-~W~f~p~~~~~~~~T~V~f~l--~fef~~p-~~~~~~~~ 168 (209)
-. ..+.+| .|++.|.+. ++.+.|++.+ .-+.++- +..+.+..
T Consensus 144 ~Vr~~y~SgE~~~~~p~~~--~~~~~vew~maT~sDpGG~IP~wl~n~~ 190 (208)
T cd08864 144 AVLGRYASVEKISYLPDAD--GKSNKVEWIMATRSDAGGNIPRWLTKLT 190 (208)
T ss_pred cEEEEEEEEEEEEEcCccC--CCcCCEEEEEEEeeCCCCcCcHHHHhcc
Confidence 00 246788 999999752 1467888888 7777765 44444444
No 77
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=34.64 E-value=24 Score=24.96 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=12.5
Q ss_pred ccceeeeEEEEEeCC
Q psy15938 126 LFDHLVTMWRFHRGL 140 (209)
Q Consensus 126 ~F~~l~g~W~f~p~~ 140 (209)
-.+.|+|.|+++|+-
T Consensus 29 fMK~FEGswKVeply 43 (74)
T PF02713_consen 29 FMKVFEGSWKVEPLY 43 (74)
T ss_pred eeeeecceeEEEeeE
Confidence 357899999999974
No 78
>PHA00742 hypothetical protein
Probab=33.62 E-value=10 Score=31.41 Aligned_cols=28 Identities=36% Similarity=0.535 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCCCcccCCccccccccC
Q psy15938 181 FAEAEMRYGKPTIPIHRLPVNVAQKYKV 208 (209)
Q Consensus 181 ~~RA~~ly~~~~~~~~~~~~~~~~~~~~ 208 (209)
+++.+++||.+..++++.-|.||+||.|
T Consensus 103 eeqSkeRYGe~vyAiLstKvevA~kydV 130 (211)
T PHA00742 103 EEQSKERYGESVYAILSTKVEVAKKYDV 130 (211)
T ss_pred hhhhHHhcCcchHHHHHHHHHHHHhhcc
Confidence 6778899999999999999999999987
No 79
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=29.63 E-value=65 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=18.7
Q ss_pred cceeeeEEEEEeCCCCCCCceEEEEEEEEE
Q psy15938 127 FDHLVTMWRFHRGLEDVPQSCVIDFYMEKA 156 (209)
Q Consensus 127 F~~l~g~W~f~p~~~~~~~~T~V~f~l~fe 156 (209)
...|-|.|++...+ ..|.|++..+--
T Consensus 9 ~~~l~G~W~l~~~~----~~C~v~L~~~~~ 34 (99)
T PF02974_consen 9 PASLAGQWQLSDGG----KSCRVTLTTTPF 34 (99)
T ss_dssp HHCC-EEEEEETSS-----EEEEEEEEEEE
T ss_pred hHHceEeeEEecCC----CceEEEeCCCcC
Confidence 46789999999322 689999988763
No 80
>cd07828 nitrobindin nitrobindin heme-binding domain. Nitrobindin is a heme-containing lipocalin that may reversibly bind nitric oxide. This heme-binding domain forms a beta barrel structure, and in a small family of proteins from tetrapods, it is found C-terminal to a THAP zinc finger domain (a sequence-specific DNA binding domain). Members of this group are putatively related to fatty acid-binding proteins (FABPs).
Probab=22.82 E-value=3e+02 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=27.0
Q ss_pred eeEEEEEEEecCCC-------eEEEEeecCcccceeeeEEEEEeCC
Q psy15938 102 VESYTSNVTLDRPK-------LIKANCFDGKLFDHLVTMWRFHRGL 140 (209)
Q Consensus 102 ~~~~tsrv~~~~~~-------~I~~~~~~G~~F~~l~g~W~f~p~~ 140 (209)
...|..++++.+.. ...|...++.||..-.|.|++.+.+
T Consensus 24 ~~~y~E~i~f~~~g~p~L~Y~s~~w~~~~~~p~h~E~Gfwr~~~~~ 69 (148)
T cd07828 24 EFTYGEEITFSHDGQPFLNYTSRTWRLDDGRPLHRETGFWRIDPDT 69 (148)
T ss_pred ceEeEEEEEEEcCCCCeEEEEEEEEeCCCCCcceEeeEEEEEcCCC
Confidence 45677777776521 2344455777999999999998753
No 81
>PF12139 APS-reductase_C: Adenosine-5'-phosphosulfate reductase beta subunit; InterPro: IPR022738 This domain is found in bacteria and archaea and is typically between 112 to 142 amino acids in length. It is found in association with PF00037 from PFAM, and has a conserved FPIRTT sequence motif. The whole beta subunit has the enzymic properties of 1.8.99.2 from EC. ; PDB: 1JNZ_B 2FJE_D 2FJD_B 1JNR_D 2FJB_B 2FJA_B 3GYX_J.
Probab=20.33 E-value=3e+02 Score=20.01 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=25.6
Q ss_pred hhcccccCCCcceEEEEEecCCeEEEEEEEeeCCc-eeEEEEEEEecCCCeE
Q psy15938 67 VENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPI-VESYTSNVTLDRPKLI 117 (209)
Q Consensus 67 Ve~YpeFlP~c~~s~Vle~~~~~~~a~l~v~~~~~-~~~~tsrv~~~~~~~I 117 (209)
|-.|.+|+|--.++.++..+++ .-|+|.|..- ..+|..-++-.+...|
T Consensus 1 vRgYADFvPlG~sv~plR~~~~---ImWtikFRnG~~KrFkfPIRTTpeGs~ 49 (83)
T PF12139_consen 1 VRGYADFVPLGGSVRPLRGTES---IMWTIKFRNGTVKRFKFPIRTTPEGSI 49 (83)
T ss_dssp E---TTTS-TT-EEEEEE-SSE---EEEEEE-TTS-EEEEEEE--SS-TT--
T ss_pred CccccceecCCCeeEeecCCCe---EEEEEEecCCceeeeecceEcCCCccc
Confidence 4579999999999999966544 5677776544 5667766666654433
Done!