RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15938
         (209 letters)



>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter
           crescentus [TaxId: 155892]}
          Length = 148

 Score = 69.8 bits (170), Expect = 6e-16
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 15/148 (10%)

Query: 50  RKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKK----IIGSLTIGFPPIVESY 105
            K++ Y+ +Q++E+V DV+ Y  FVP+                 +     +GF  + E +
Sbjct: 7   TKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKF 66

Query: 106 TSNVTLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYME---KAFFAEAE 162
            + V  D+             F  L   WRF         +  ++F +E   K+   +A 
Sbjct: 67  ATRVRRDKDARSIDVSLLYGPFKRLNNGWRF----MPEGDATRVEFVIEFAFKSALLDAM 122

Query: 163 M-RYGNRVLLTSMQMEKAFFAEAEMRYG 189
           +    +R      ++   F A A+  +G
Sbjct: 123 LAANVDRAA---GKLIACFEARAQQLHG 147


>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 66.1 bits (160), Expect = 1e-14
 Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 4/105 (3%)

Query: 50  RKLVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNV 109
            + +    E++Y +  D+E  K ++   +   V  +   +               +    
Sbjct: 6   ERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRWVAVAMGKKVRWLEEE 65

Query: 110 TLDRPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYME 154
             D   L          FD     W F        +   +   + 
Sbjct: 66  EWDDENLRNRFFSPEGDFDRYEGTWVF----LPEGEGTRVVLTLT 106


>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN,
           cyclase/aromatase domain {Streptomyces glaucescens
           [TaxId: 1907]}
          Length = 155

 Score = 56.1 bits (134), Expect = 9e-11
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 6/141 (4%)

Query: 52  LVGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTI--GFPPIVESYTSNV 109
           +V    E +++V +D+E +        ++ +  +        L         V  + S+ 
Sbjct: 10  VVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSHR 69

Query: 110 TLDRPKL-IKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYME-KAFFAEAEMRYGN 167
             D+    ++A+  +   F ++   W +           V +F M+  A F  A M    
Sbjct: 70  VPDKGSRTVRAHRVETGPFAYMNLHWTYRAVAGGTEMRWVQEFDMKPGAPFDNAHMT--A 127

Query: 168 RVLLTSMQMEKAFFAEAEMRY 188
            +  T+    +      E R+
Sbjct: 128 HLNTTTRANMERIKKIIEDRH 148


>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20
           {Geobacillus kaustophilus [TaxId: 1462]}
          Length = 147

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 2/139 (1%)

Query: 53  VGYSREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLD 112
           +  + E+++  + D       +  CK   +  + + K    + I            VT  
Sbjct: 9   LKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDI 68

Query: 113 RPKLIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLL- 171
           +P        +G+     V             +   + +    A         G R+L  
Sbjct: 69  KPPYHYKLLVNGEGGPGFVNAEGVIDLTPINDECTQLTYTY-SAEVGGKVAAIGQRMLGG 127

Query: 172 TSMQMEKAFFAEAEMRYGK 190
            +  +   FF + +    K
Sbjct: 128 VAKLLISDFFKKIQKEIAK 146


>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440
           {Streptococcus mutans [TaxId: 1309]}
          Length = 137

 Score = 27.0 bits (58), Expect = 0.98
 Identities = 11/130 (8%), Positives = 31/130 (23%), Gaps = 5/130 (3%)

Query: 56  SREQMYEVVSDVENYKNFVPFCKKSVVTYKSEKKIIGSLTIGFPPIVESYTSNVTLDRPK 115
            +E  +   S V  +  +    ++  +  +      G + +   P +      V  ++  
Sbjct: 12  KKEDAWTYYSQVNQWFVWEGDLEQISLEGEFTTGQKGKMKMEDMPELAFTLVEVRENQCF 71

Query: 116 LIKANCFDGKLFDHLVTMWRFHRGLEDVPQSCVIDFYMEKAFFAEAEMRYGNRVLLTSMQ 175
                          V          D   S      +  +   E  + +  ++     +
Sbjct: 72  -----SDLTATPFGNVLFEHEILENPDGTISLRHSVSLTDSDTTEEALAFLKQIFADVPE 126

Query: 176 MEKAFFAEAE 185
                    E
Sbjct: 127 SVGKLKQILE 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 792,067
Number of extensions: 36847
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 7
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)