BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15942
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 71 LCMRKAEWEGRGVAHLQLDTIEFEA-PSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRS 129
LC EW+ GV L+L T++ P+L + KG++F K G Y+HCKAGRSRS
Sbjct: 44 LCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRS 103
Query: 130 ATLTACYLIKNYNMNPDDAVKYITYKRKQIRI 161
AT+ A YLI+ +N +P++A++ I R I I
Sbjct: 104 ATMVAAYLIQVHNWSPEEAIEAIAKIRSHISI 135
>pdb|3RGQ|A Chain A, Crystal Structure Of Ptpmt1 In Complex With Pi(5)p
Length = 156
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 71 LCMRKAEWEGRGVAHLQLDTIEFEA-PSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRS 129
LC EW+ GV L+L T++ P+L + KG++F K G Y+H KAGRSRS
Sbjct: 45 LCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHSKAGRSRS 104
Query: 130 ATLTACYLIKNYNMNPDDAVKYITYKRKQIRI 161
AT+ A YLI+ +N +P++A++ I R I I
Sbjct: 105 ATMVAAYLIQVHNWSPEEAIEAIAKIRSHISI 136
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 52 FLSPAMTAAEFNLCIARDILCMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEF---- 107
FL A+ +L AR I C+ A E Q + ++ + GL F
Sbjct: 34 FLGRGSVASNRHLLQARGITCIVNATIEIPNFNWPQFEYVKVPLADMPHAPIGLYFDTVA 93
Query: 108 --IQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIR 160
I V++ G T +HC AG SRSATL YL+K +N+ +A ++ +R IR
Sbjct: 94 DKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRPVIR 148
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 106 EFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYI 152
EF+ + G +HCKAG R+ TL ACY++K+Y M + + ++
Sbjct: 260 EFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWV 306
>pdb|1M3G|A Chain A, Solution Structure Of The Catalytic Domain Of Mapk
Phosphatase Pac-1: Insights Into Substrate-Induced
Enzymatic Activation
Length = 145
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 102 EKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRI 161
++ + FI V SGG +H +AG SRSAT+ YL+++ + D+A ++ +R I
Sbjct: 68 QEAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYLMQSRRVRLDEAFDFVKQRRGVISP 127
Query: 162 TKTEKAQIDQ 171
+ Q+ Q
Sbjct: 128 NFSFMGQLLQ 137
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQI 159
Q G IHC+AG SRSAT+ YL+K+ M DA K++ KR I
Sbjct: 85 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPII 131
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 78 WEGRGVAHLQL---DTIEFEAPSLYAIEKGLEFI-QKVAQSGGVTYIHCKAGRSRSATLT 133
++ G+ +L + DT EF + + E+ +FI Q +AQ G +HC+ G SRS TL
Sbjct: 77 YKDSGITYLGIKANDTQEFNLSAYF--ERAADFIDQALAQKNGRVLVHCREGYSRSPTLV 134
Query: 134 ACYLIKNYNMNPDDAVKYITYKRK 157
YL+ M+ A+ + R+
Sbjct: 135 IAYLMMRQKMDVKSALSIVRQNRE 158
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 78 WEGRGVAHLQL---DTIEFEAPSLYAIEKGLEFI-QKVAQSGGVTYIHCKAGRSRSATLT 133
++ G+ +L + DT EF + + E+ +FI Q +AQ G +HC+ G SRS TL
Sbjct: 76 YKDSGITYLGIKANDTQEFNLSAYF--ERAADFIDQALAQKNGRVLVHCREGYSRSPTLV 133
Query: 134 ACYLIKNYNMNPDDAVKYITYKRK 157
YL+ M+ A+ + R+
Sbjct: 134 IAYLMMRQKMDVKSALSIVRQNRE 157
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 113 QSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQI 159
Q G IHC+AG SRSAT+ YL+K+ M DA K++ KR I
Sbjct: 81 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPII 127
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 82 GVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY 141
G+ +L +F P+ I++ ++ + + G +HC G R+ T+ ACYL+K
Sbjct: 55 GLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKER 114
Query: 142 NMNPDDAVKYITYKRK-QIRITKTEKA 167
+ DA+ I R I + EKA
Sbjct: 115 GLAAGDAIAEIRRLRPGSIETYEQEKA 141
>pdb|2R0B|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase-like
Serine/threonine/tyrosine-interacting Protein
Length = 154
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 106 EFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKR 156
EFI Q GG +H AG SRSA Y+++ + M DA Y+ +R
Sbjct: 81 EFIDGSLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERR 131
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 78 WEGRGVAHLQLDTIEFEAPSL-YAIEKGLEFIQK-VAQSGGVTYIHCKAGRSRSATLTAC 135
+EG G+ +L ++ + A + + +FI + ++Q GG +HC G SRSATL
Sbjct: 46 YEGLGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLA 105
Query: 136 YLIKNYNMNPDDAVKYITYKRKQI 159
YL+ +++ +A+K + R I
Sbjct: 106 YLMLYHHLTLVEAIKKVKDHRGII 129
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 101 IEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQI 159
++ ++FI V + GG +H +AG SRS T+ YL+K +A YI +R +
Sbjct: 69 FQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMV 127
>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4
Length = 146
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 103 KGLEFIQK-VAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQI 159
+ +EFI + ++Q+ GV +HC AG SRS T+T YL++ +++ +DA + K+ I
Sbjct: 70 EAIEFIDEALSQNCGVL-VHCLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNI 126
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 82 GVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNY 141
G+ +L +F P+ I++ ++ + + G +HC G R+ T ACYL+K
Sbjct: 56 GLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTXLACYLVKER 115
Query: 142 NMNPDDAVKYITYKRK-QIRITKTEKA 167
+ DA+ I R I + EKA
Sbjct: 116 GLAAGDAIAEIRRLRPGSIETYEQEKA 142
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 106 EFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYI 152
EF+ + G +H KAG R+ TL ACY++K+Y M + + ++
Sbjct: 260 EFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWV 306
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 78 WEGRGVAHLQL---DTIEFEAPSLYAIEKGLEFI-QKVAQSGGVTYIHCKAGRSRSATLT 133
++ G+ +L + DT EF + + E+ +FI Q +AQ G +H + G SRS TL
Sbjct: 77 YKDSGITYLGIKANDTQEFNLSAYF--ERAADFIDQALAQKNGRVLVHSREGYSRSPTLV 134
Query: 134 ACYLIKNYNMNPDDAVKYITYKRK 157
YL+ M+ A+ + R+
Sbjct: 135 IAYLMMRQKMDVKSALSIVRQNRE 158
>pdb|2HCM|A Chain A, Crystal Structure Of Mouse Putative Dual Specificity
Phosphatase Complexed With Zinc Tungstate, New York
Structural Genomics Consortium
Length = 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 82 GVAHLQLDTIEFEAPSLYA-IEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKN 140
GVA L++ + A L +E ++ + GG ++CK GRSRSA + YL+++
Sbjct: 55 GVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRH 114
Query: 141 YNMNPDDAVKYITYKRK 157
+ D A + + R
Sbjct: 115 RGHSLDRAFQMVKSARP 131
>pdb|2NT2|A Chain A, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|B Chain B, Crystal Structure Of Slingshot Phosphatase 2
pdb|2NT2|C Chain C, Crystal Structure Of Slingshot Phosphatase 2
Length = 145
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 106 EFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKR 156
+FI K + G +H K G SRSA+ Y +K Y N D A Y+ +R
Sbjct: 72 KFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERR 122
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 106 EFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIR 160
+ I V G T +HC AG SRSA L YL+K + M+ DA + R IR
Sbjct: 88 DHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIR 142
>pdb|4HRF|A Chain A, Atomic Structure Of Dusp26
pdb|4HRF|B Chain B, Atomic Structure Of Dusp26
pdb|4HRF|C Chain C, Atomic Structure Of Dusp26
pdb|4HRF|D Chain D, Atomic Structure Of Dusp26
Length = 160
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 78 WEGRGVAHLQLDTIEFEAPSL-YAIEKGLEFIQK-VAQSGGVTYIHCKAGRSRSATLTAC 135
+EG G+ +L ++ + A + + +FI + ++Q GG +H G SRSATL
Sbjct: 47 YEGLGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHSAVGVSRSATLVLA 106
Query: 136 YLIKNYNMNPDDAVKYITYKRKQI 159
YL+ +++ +A+K + R I
Sbjct: 107 YLMLYHHLTLVEAIKKVKDHRGII 130
>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9)
Length = 155
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 103 KGLEFIQK-VAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRI 161
+ +EFI + ++Q+ GV +H AG SRS T+T YL++ +++ +DA Y KRK+ I
Sbjct: 73 EAIEFIDEALSQNCGVL-VHSLAGVSRSVTVTVAYLMQKLHLSLNDA--YDLVKRKKSNI 129
Query: 162 T 162
+
Sbjct: 130 S 130
>pdb|3EZZ|A Chain A, Crystal Structure Of Human Mkp-2
pdb|3EZZ|B Chain B, Crystal Structure Of Human Mkp-2
pdb|3EZZ|C Chain C, Crystal Structure Of Human Mkp-2
pdb|3EZZ|D Chain D, Crystal Structure Of Human Mkp-2
pdb|3EZZ|E Chain E, Crystal Structure Of Human Mkp-2
pdb|3EZZ|F Chain F, Crystal Structure Of Human Mkp-2
Length = 144
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 103 KGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQIRIT 162
+ +E+I V G +H +AG SRSAT+ YL+ + ++A +++ +R I
Sbjct: 69 EAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPN 128
Query: 163 KTEKAQIDQ 171
+ Q+ Q
Sbjct: 129 FSFMGQLLQ 137
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 120 IHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKR 156
+HC GRSRSATL YL+ + +M DA++ + R
Sbjct: 144 VHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNR 180
>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3)
Length = 144
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 103 KGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRKQI 159
+ + FI + +H AG SRS T+T YL++ N++ +DA + K+ I
Sbjct: 71 EAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSNI 127
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 67 ARDILCMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQ----SGGVTYIHC 122
+D++ W GV P+ A E L+F+Q V Q S G IHC
Sbjct: 185 VQDVMHFNYTAWPDHGV------------PTANAAESILQFVQMVRQKSVKSKGPMIIHC 232
Query: 123 KAGRSRSATLTA 134
AG R+ T A
Sbjct: 233 SAGVGRTGTFIA 244
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 91 IEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
I + PSL +I I IHC+ G SRSATL Y++K +N++
Sbjct: 99 IALDLPSLTSI------IHAATTKREKILIHCQCGLSRSATLIIAYIMKYHNLS 146
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 101 IEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRK--- 157
++ ++FI + G +HC AG SRS TL Y++ + +DA+ + R
Sbjct: 69 FKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCAN 128
Query: 158 -----QIRITKTEKAQIDQ 171
Q ++ + EK ++ Q
Sbjct: 129 PNVGFQRQLQEFEKHEVHQ 147
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 117 VTYIHCKAGRSRSATLTACYLIKNYNMNP-DDAVKYITYKRKQIRI 161
V IHCKAG+ R+ TL + +L+++ + +A++Y +R +
Sbjct: 116 VIAIHCKAGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEV 161
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 68 RDILCMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQ----SGGVTYIHCK 123
+D++ W GV P+ A E L+F+ V Q S G IHC
Sbjct: 177 QDVMHFNYTAWPDHGV------------PTANAAESILQFVHMVRQQATKSKGPMIIHCS 224
Query: 124 AGRSRSATLTA 134
AG R+ T A
Sbjct: 225 AGVGRTGTFIA 235
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 68 RDILCMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQ----SGGVTYIHCK 123
+D++ W GV P+ A E L+F+ V Q S G IHC
Sbjct: 179 QDVMHFNYTAWPDHGV------------PTANAAESILQFVHMVRQQATKSKGPMIIHCS 226
Query: 124 AGRSRSATLTA 134
AG R+ T A
Sbjct: 227 AGVGRTGTFIA 237
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 116 GVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKR 156
G +HC G SRSATL +L+ NM +A++ + R
Sbjct: 132 GRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHR 172
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 117 VTYIHCKAGRSRSATLTACYLIKNYNMNP-DDAVKYITYKRKQIRI 161
V IHCK G+ R+ TL + +L+++ + +A++Y +R +
Sbjct: 106 VIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEV 151
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 117 VTYIHCKAGRSRSATLTACYLIKNYNMNP-DDAVKYITYKRKQIRI 161
V IHCK G+ R+ TL + +L+++ + +A++Y +R +
Sbjct: 116 VIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEV 161
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 117 VTYIHCKAGRSRSATLTACYLIKNYNMNP-DDAVKYITYKRKQIRI 161
V IHCK G+ R+ TL + +L+++ + +A++Y +R +
Sbjct: 128 VIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEV 173
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 116 GVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKR 156
G +HC G SRSATL +L+ NM +A++ + R
Sbjct: 132 GRVLVHCAMGVSRSATLVLAFLMICENMTLVEAIQTVQAHR 172
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 120 IHCKAGRSRSATLTACYLIKNYNMNPDDAVKYITYKRK 157
+HC AG R+ L A L++ N++ DA+ I KRK
Sbjct: 114 VHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRK 151
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 111 VAQSGGVTYIHCKAGRSR--SATLTACYLIKNYNMNPDDAVKYITYKR 156
V ++GGVTY+H AG R + LT + ++ Y + +A K + KR
Sbjct: 102 VKRNGGVTYVHSTAGXGRAPAVALTYXFWVQGYKLX--EAHKLLXSKR 147
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 79 EGRGVAHLQLDTI-EFEAPSLYAIEKGLEFIQKVAQSG------GVTYIHCKAGRSRSAT 131
E R ++H T +F P A L F+ KV +SG G IHC AG RS T
Sbjct: 168 ETRTISHFHYTTWPDFGVPESPA--SFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGT 225
Query: 132 LT 133
+
Sbjct: 226 FS 227
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 217 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 269
>pdb|2J17|A Chain A, Ptyr Bound Form Of Sdp-1
pdb|2J17|B Chain B, Ptyr Bound Form Of Sdp-1
Length = 182
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 91 IEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
I + PSL +I I IH + G SRSATL Y++K +N++
Sbjct: 99 IALDLPSLTSI------IHAATTKREKILIHSQCGLSRSATLIIAYIMKYHNLS 146
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 291
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 238 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 290
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 291
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 291
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 238 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 290
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 120 IHCKAGRSRSATLTACYLI---KNYNMNPDDAVKYITYKRKQIRITKTEKAQI 169
IHC+AG R+A L + +N ++ +D V + +R I + K E+ +
Sbjct: 239 IHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDV 291
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 34 EFNLCIARDILCMRKAVAFLSPAMTAAEFNLCIARDILCMRKAEWEGRGVAHLQLDTIEF 93
E+ + + + + AV +L+ A + LC A +C +K E E H Q
Sbjct: 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ-----N 308
Query: 94 EAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSR 128
E P + FI+ + Q G + H S+
Sbjct: 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343
>pdb|2J16|A Chain A, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 91 IEFEAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
I + PSL +I I IH + G SRSATL Y++K +N++
Sbjct: 99 IALDLPSLTSI------IHAATTKREKILIHXQCGLSRSATLIIAYIMKYHNLS 146
>pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|A Chain A, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|C Chain C, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 151
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNM 143
+L A+EKG+ ++ V Y + R TL AC + +NYN+
Sbjct: 31 ALDAVEKGVRLVEDDPTERSVGY-GGRPDRDGRVTLDACIMDENYNI 76
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 54 SPAMTAAEFNLCIARDILCMRKAEWEGRGVAHLQLDTIEFEAPSLYAIEKGLEFIQKVAQ 113
P AA FN +A D R+ W+ R A + A L AI KGL+ I++ +
Sbjct: 13 GPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIE 72
Query: 114 SG 115
+G
Sbjct: 73 AG 74
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYI 152
+L A+EKG+ ++ V Y + R TL AC + +NYN+ +++I
Sbjct: 35 ALDAVEKGVRLVEDDPTERSVGY-GGRPDRDGRVTLDACIMDENYNIGSVACMEHI 89
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 94 EAPSLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYIT 153
E P ++ + FI +GG +H AG SRS T+ Y++ + D ++ I
Sbjct: 63 EVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIK 122
Query: 154 YKR 156
R
Sbjct: 123 ATR 125
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
+L A+EKG+ ++ V Y + R TL AC + +NYN+
Sbjct: 31 ALDAVEKGVRLVEDDPTERSVGY-GGRPDRDGRVTLDACIMDENYNIG 77
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 117 VTYIHCKAGRSRSATLTACYLI 138
V IHCKAG+ R+ + YL+
Sbjct: 113 VAAIHCKAGKGRTGVMICAYLL 134
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMN 144
+L A+EKG+ ++ V Y + R TL AC + +NYN+
Sbjct: 31 ALDAVEKGVRLVEDDPTERSVGY-GGRPDRDGRVTLDACIMDENYNIG 77
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYI 152
+L A+EKG+ ++ V Y + R TL AC + +NYN+ +++I
Sbjct: 31 ALDAVEKGVRLVEDDPTERSVGY-GGRPDRDGRVTLDACIMDENYNIGSVACMEHI 85
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 97 SLYAIEKGLEFIQKVAQSGGVTYIHCKAGRSRSATLTACYLIKNYNMNPDDAVKYI 152
+L A+EKG+ ++ V Y + R TL AC + +NYN+ +++I
Sbjct: 31 ALDAVEKGVRLVEDDPTERSVGY-GGRPDRDGRVTLDACIMDENYNIGSVACMEHI 85
>pdb|3SN6|N Chain N, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 138
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 100 AIEKGLEFIQKVAQSGG-VTYIHCKAGR---SRSATLTACYLIKNYNMNPDDAVKY 151
A KGLE++ ++QSG ++Y GR SR YL N ++ P+D Y
Sbjct: 40 APGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMN-SLKPEDTAVY 94
>pdb|1KXV|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|D Chain D, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 121
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 100 AIEKGLEFIQKVAQSGGVTYIHCKAGR---SRSATLTACYLIKNYNMNPDDAVKYITYKR 156
A KG +F+ + G TY+ AGR S+ YL + ++ PDD Y Y +
Sbjct: 40 APGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMD-SLKPDDTAMY--YCK 96
Query: 157 KQIR 160
+R
Sbjct: 97 PSLR 100
>pdb|3KR3|H Chain H, Crystal Structure Of Igf-Ii Antibody Complex
Length = 251
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 100 AIEKGLEFIQKVAQSGGVT-YIHCKAGR---SRSATLTACYLIKNYNMNPDDAVKY 151
A KGLE++ ++ SGG+T Y GR SR + YL N D AV Y
Sbjct: 40 APGKGLEWVSVISSSGGMTRYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY 95
>pdb|3SKJ|H Chain H, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
pdb|3SKJ|I Chain I, Structural And Functional Characterization Of An Agonistic
Anti-Human Epha2 Monoclonal Antibody
Length = 231
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 100 AIEKGLEFIQKVAQSGGVT-YIHCKAGR---SRSATLTACYLIKNYNMNPDDAVKY 151
A KGLE++ ++ SGG T Y GR SR + YL N D AV Y
Sbjct: 40 APGKGLEWVSRIGPSGGPTHYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY 95
>pdb|3QYC|A Chain A, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
pdb|3QYC|B Chain B, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
Length = 146
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 100 AIEKGLEFIQKVAQSGGVT-YIHCKAGR---SRSATLTACYLIKNYNMNPDDAVKY 151
A KGLE++ ++ SGG T Y GR SR + YL N D AV Y
Sbjct: 42 APGKGLEWVSAISSSGGSTYYADSVKGRFTISRDNSKNTVYLQMNSLRAEDTAVYY 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,702,515
Number of Sequences: 62578
Number of extensions: 206720
Number of successful extensions: 538
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 68
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)